https://genomewiki.ucsc.edu/api.php?action=feedcontributions&user=Acs&feedformat=atomgenomewiki - User contributions [en]2024-03-28T12:40:00ZUser contributionsMediaWiki 1.38.4https://genomewiki.ucsc.edu/index.php?title=File:Gbdb_exclude.txt&diff=2357File:Gbdb exclude.txt2006-08-10T21:30:26Z<p>Acs: File listing directories to be excluded when rsyncing /gbdb.</p>
<hr />
<div>File listing directories to be excluded when rsyncing /gbdb.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=File:Databases.txt&diff=2356File:Databases.txt2006-08-10T21:29:32Z<p>Acs: File listing databases (assemblies) to be mirrored.</p>
<hr />
<div>File listing databases (assemblies) to be mirrored.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=File:DoUpdateDb_sh.txt&diff=2355File:DoUpdateDb sh.txt2006-08-10T21:28:45Z<p>Acs: Shell script for updating local mysql database with data from hgdownload</p>
<hr />
<div>Shell script for updating local mysql database with data from hgdownload</div>Acshttps://genomewiki.ucsc.edu/index.php?title=File:DoDownloads_sh.txt&diff=2354File:DoDownloads sh.txt2006-08-10T21:27:40Z<p>Acs: Shell script for downloading data for selected assemblies from hgdownload</p>
<hr />
<div>Shell script for downloading data for selected assemblies from hgdownload</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2353Browser Mirrors2006-08-10T21:26:04Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads_sh.txt|doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb_sh.txt|doUpdateDb.sh]] - Script for updating local mysql databases with downloaded files.<br />
* [[Media:databases.txt|databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb_exclude.txt|gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, with the following crontab entry:<br />
<br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh:<br />
<br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
<br />
To mirror a new database, simply add the name (e.g., galGal3) to the databases file and, if necessary, delete it from gbdb.exclude. Similary, delete an entry from databases and add it to gbdb.exclude to discontinue mirroring it. (You will manually need to delete the current files and database, if desired.) Note that doDownloads.sh and doUpdateDb.sh can be run manually, either on all databases or just on selected databases (see -d option). The "dry-run" (-n) option is handy for seeing what they will do without actually making any changes.<br />
<br />
These programs are a work in progress. One minor problem is that they contain hardcoded paths to /usr/data/mirror-downloads, which is the working directory on our system. This can easily be corrected. Another issue is that we want to allow for local tracks in addition to mirrored tracks. As a result, we cannot use the --delete option when we rsync files to /gbdb and we cannot simply overwrite the hgcentral tables with the 'hgcentral.sql' table provided on hgdownload (see comments in scripts). A related issue is that updates on hgdownload to trackDb tables currently cause our own local versions of these tables to be overwritten, and we have to redefine them from our local trackDb.ra files each time this happens. To address these problems, we will need to do some programming that will allow updated data from hgdownload to be merged with our own local data. Users who do not need to maintain their own local files need not worry about these issues -- but you may want to edit the scripts to use the --delete option with rsync and to download and load hgcentral.sql.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2344Browser Mirrors2006-08-10T15:40:09Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql databases with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, with the following crontab entry:<br />
<br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh:<br />
<br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
<br />
To mirror a new database, simply add the name (e.g., galGal3) to the databases file and, if necessary, delete it from gbdb.exclude. Similary, delete an entry from databases and add it to gbdb.exclude to discontinue mirroring it. (You will manually need to delete the current files and database, if desired.) Note that doDownloads.sh and doUpdateDb.sh can be run manually, either on all databases or just on selected databases (see -d option). The "dry-run" (-n) option is handy for seeing what they will do without actually making any changes.<br />
<br />
These programs are a work in progress. One minor problem is that they contain hardcoded paths to /usr/data/mirror-downloads, which is the working directory on our system. This can easily be corrected. Another issue is that we want to allow for local tracks in addition to mirrored tracks. As a result, we cannot use the --delete option when we rsync files to /gbdb and we cannot simply overwrite the hgcentral tables with the 'hgcentral.sql' table provided on hgdownload (see comments in scripts). A related issue is that updates on hgdownload to trackDb tables currently cause our own local versions of these tables to be overwritten, and we have to redefine them from our local trackDb.ra files each time this happens. To address these problems, we will need to do some programming that will allow updated data from hgdownload to be merged with our own local data. Users who do not need to maintain their own local files need not worry about these issues -- but you may want to edit the scripts to use the --delete option with rsync and to download and load hgcentral.sql.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2343Browser Mirrors2006-08-10T15:37:00Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql databases with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, with the following crontab entry:<br />
<br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh:<br />
<br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
<br />
To mirror a new database, simply add the name (e.g., galGal3) to the databases file and, if necessary, delete it from gbdb.exclude. Note that doDownloads.sh and doUpdateDb.sh can be run manually, either on all databases or just on selected databases (see -d option). The "dry-run" (-n) option is handy for seeing what they will do without actually making any changes.<br />
<br />
These programs are a work in progress. One minor problem is that they contain hardcoded paths to /usr/data/mirror-downloads, which is the working directory on our system. This can easily be corrected. Another issue is that we want to allow for local tracks in addition to mirrored tracks. As a result, we cannot use the --delete option when we rsync files to /gbdb and we cannot simply overwrite the hgcentral tables with the 'hgcentral.sql' table provided on hgdownload (see comments in scripts). A related issue is that updates on hgdownload to trackDb tables currently cause our own local versions of these tables to be overwritten, and we have to redefine them from our local trackDb.ra files each time this happens. To address these problems, we will need to do some programming that will allow updated data from hgdownload to be merged with our own local data. Users who do not need to maintain their own local files need not worry about these issues -- but you may want to edit the scripts to use the --delete option with rsync and to download and load hgcentral.sql.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2342Browser Mirrors2006-08-10T15:35:48Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql databases with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, with the following crontab entry:<br />
<br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh:<br />
<br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
<br />
To mirror a new database, simply add the name (e.g., galGal3) to the databases file and, if necessary, delete it from gbdb.exclude. Note that doDownloads.sh and doUpdateDb.sh can be run manually, either on all databases or just on selected databases (see -d option). The "dry-run" (-n) option is handy for seeing what they will do without actually making any changes.<br />
<br />
These programs are a work in progress. One minor problem is that they contain hardcoded paths to /usr/data/mirror-downloads, which is the working directory on our system. This can easily be corrected. Another issue is that we want to allow for local tracks in addition to mirrored tracks. As a result, we cannot use the --delete option when we rsync files to /gbdb and we cannot simply overwrite the hgcentral tables with the 'hgcentral.sql' table provided on hgdownload (see comments in scripts). A related issue is that updates on hgdownload to trackDb tables currently cause our own local versions of these tables to be overwritten, and we have to redefine them from our local trackDb.ra files each time this happens. To address these problems, we will need to do some programming that will allow updated data from hgdownload to be merged with our own local data. Users who do not need to maintain their own local files need not worry about these issues -- but you may want to edit the scripts to use the --delete option when rsyncing /gbdb and to download and load hgcentral.sql.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2341Browser Mirrors2006-08-10T15:34:03Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql databases with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, via the following crontab entry:<br />
<br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh:<br />
<br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
<br />
To mirror a new database, simply add the name (e.g., galGal3) to the databases file and, if necessary, delete it from gbdb.exclude. Note that doDownloads.sh and doUpdateDb.sh can be run manually, either on all databases or just on selected databases (see -d option). The "dry-run" (-n) option is handy for seeing what they will do without actually making any changes.<br />
<br />
These programs are a work in progress. One minor problem is that they contain hardcoded paths to /usr/data/mirror-downloads, which is the working directory on our system. This can easily be corrected. Another issue is that we want to allow for local tracks in addition to mirrored tracks. As a result, we cannot use the --delete option when we rsync files to /gbdb and we cannot simply overwrite the hgcentral tables with the 'hgcentral.sql' table provided on hgdownload (see comments in scripts). A related issue is that updates on hgdownload to trackDb tables currently cause our own local versions of these tables to be overwritten, and we have to redefine them from our local trackDb.ra files each time this happens. To address these problems, we will need to do some programming that will allow updated data from hgdownload to be merged with our own local data. Users who do not need to maintain their own local files need not worry about these issues -- but you may want to edit the scripts to use the --delete option when rsyncing /gbdb and to download and load hgcentral.sql.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2340Browser Mirrors2006-08-10T15:32:43Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql database with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, via the following crontab entry:<br />
<br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh:<br />
<br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
<br />
To mirror a new database, simply add the name (e.g., galGal3) to the databases file and, if necessary, delete it from gbdb.exclude. Note that doDownloads.sh and doUpdateDb.sh can be run manually, either on all databases or just on selected databases (see -d option). The "dry-run" (-n) option is handy for seeing what they will do without actually making any changes.<br />
<br />
These programs are a work in progress. One minor problem is that they contain hardcoded paths to /usr/data/mirror-downloads, which is the working directory on our system. This can easily be corrected. Another issue is that we want to allow for local tracks in addition to mirrored tracks. As a result, we cannot use the --delete option when we rsync files to /gbdb and we cannot simply overwrite the hgcentral tables with the 'hgcentral.sql' table provided on hgdownload (see comments in scripts). A related issue is that updates on hgdownload to trackDb tables currently cause our own local versions of these tables to be overwritten, and we have to redefine them from our local trackDb.ra files each time this happens. To address these problems, we will need to do some programming that will allow updated data from hgdownload to be merged with our own local data. Users who do not need to maintain their own local files need not worry about these issues -- but you may want to edit the scripts to use the --delete option when rsyncing /gbdb and to download and load hgcentral.sql.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2339Browser Mirrors2006-08-10T15:10:23Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql database with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, using the following crontab entry:<br />
<br />
<blockquote><br />
<code><br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
</code><br />
</blockquote><br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh, viz.<br />
<br />
<blockquote><br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
</blockquote></div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2338Browser Mirrors2006-08-10T15:08:44Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts and auxiliary files are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql database with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.<br />
<br />
These programs are run nightly via cron, using the following crontab entry:<br />
<br />
<blockquote><br />
<code><br />
0 0 * * * /usr/data/mirror-download/doAll.sh <br />
</code><br />
</blockquote><br />
<br />
where doAll.sh is a simple wrapper for doDownloads.sh and doUpdateDb.sh, viz.<br />
<br />
<blockquote><br />
<code><br />
#!/bin/bash -e<br />
<br />
# do downloads and updates<br />
# for use with cron<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doDownloads.sh<br />
<br />
echo "#####################################"<br />
/usr/data/mirror-download/doUpdateDb.sh<br />
<br />
echo "#####################################"<br />
echo "Successfully updated mirror."<br />
</code><br />
</blockquote></div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2337Browser Mirrors2006-08-10T14:44:51Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts are used for this purpose at Cornell (http://genome-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql database with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2336Browser Mirrors2006-08-10T14:42:54Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts are used for this purpose at Cornell (http://browser-mirror.bscb.cornell.edu).<br />
<br />
* [[Media:doDownloads.sh]] - Script for downloading selected files from hgdownload.cse.ucsc.edu<br />
* [[Media:doUpdateDb.sh]] - Script for updating local mysql database with downloaded files.<br />
* [[Media:databases]] - File identifying which databases to mirror.<br />
* [[Media:gbdb.exclude]] - File identifying directories to be excluded when rsyncing /gbdb.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2330Browser Mirrors2006-08-10T13:15:10Z<p>Acs: </p>
<hr />
<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts are used for this purpose at http://browser-mirror.bscb.cornell.edu.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Mirror&diff=2329Mirror2006-08-10T13:07:43Z<p>Acs: Redirecting to Browser Mirrors</p>
<hr />
<div>#REDIRECT [[Browser Mirrors]]</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Mirror&diff=2328Mirror2006-08-10T13:06:48Z<p>Acs: </p>
<hr />
<div>#REDIRECT [[Browser Mirrors]</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Main_Page&diff=2327Main Page2006-08-10T13:02:49Z<p>Acs: /* Current Hot Topics */</p>
<hr />
<div><h2>Welcome to the UCSC Genome Browser Wiki Site</h2><br />
<br />
This wiki site provides a forum for sharing information about the [http://genome.ucsc.edu/ UCSC Genome Browser], a Web-based tool that provides a fast, easy way to display a specific region of a genome assembly, along with dozens of aligned annotation tracks. The browser features data from a large collection of vertebrates, model organisms, and selected invertebrate genomes. <br />
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In addition to offering general information about the browser on this site, we'd also like to share tips and tricks for more advanced users, information for mirror sites and developers, and discussions of the underlying data sets and experimental protocols. Please feel free to use this wiki to organize your collaborations and exchange ideas about Genome Browser usage. Our intent is to develop a collection of interesting projects and a store of information useful to a variety of audiences.<br />
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Before editing this wiki, please create an account by clicking on the "Log in/create account" link at the top of the page. For information about editing wiki pages, see the Wikipedia guidelines on [http://en.wikipedia.org/wiki/Wikipedia:How_to_edit_a_page How to edit a page], also the [[Help:Contents]] link for specific information about this wiki.<br />
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== Current Hot Topics ==<br />
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* [[High Throughput Genome Builds]] - High Throughput genome builds<br />
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* [[Medical Sequencing Data]] - discussion for design of next generation medical sequence data organization<br />
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* [[custom track database]] implementation<br />
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* How to create a custom track - [http://genome.cse.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks]<br />
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* Genome Analysis - Phylogenetic origin of human SGSH introns [[Ancestral_introns:_SGSH]]<br />
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* [[Implementation_Notes]] describe some of the down-and-dirty details that QAers often ask developers about... or that they get an earful about when they ask simple questions!<br />
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* [[The source tree]]<br />
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* [[Browser Mirrors]]<br />
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<h2> Administrative Information </h2><br />
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You must log in '''and''' confirm your email address to edit pages. To create an account, click the "Log in/create account" link at the top of the page, then confirm your email address via the "Preferences" link. <br />
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<google></google><br />
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(note: google has not indexed the genomewiki site yet)</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Browser_Mirrors&diff=2326Browser Mirrors2006-08-10T13:02:32Z<p>Acs: </p>
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<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
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==Partial Mirrors==<br />
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A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts are used for this purpose at the Siepel lab at Cornell.</div>Acshttps://genomewiki.ucsc.edu/index.php?title=Mirror&diff=2325Mirror2006-08-10T12:56:16Z<p>Acs: </p>
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<div>This page contains information for users interested in mirroring the UCSC Genome Browser on their own servers.<br />
See also http://genome.ucsc.edu/mirror.html<br />
<br />
==Partial Mirrors==<br />
<br />
A complete mirror of all assemblies requires a large amount of disk space (currently on the order of a terabyte). However, it is not too difficult to set things up so that only a portion of assemblies are mirrored. The following scripts are used for this purpose at the Siepel lab at Cornell.</div>Acs