#!/bin/sh
#
#	set environment to run GIT update

umask 002

export MYSQLLIBS="/usr/lib64/mysql/libmysqlclient.a -lz"
export MYSQLINC=/usr/include/mysql
export MACHTYPE=x86_64
export HGCGI=/usr/local/apache/cgi-bin
export USE_BAM=1
export USE_PNG=1
export USE_SSL=1
export KNETFILE_HOOKS=1
# export SAMDIR=/hive/data/outside/samtools/samtools-0.1.8/x86_64
# export SAMINC=${SAMDIR}
# export SAMLIB=${SAMDIR}/libbam.a
export PATH=/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/cluster/bin/${MACHTYPE}:/cluster/home/${LOGNAME}/bin/${MACHTPE}:/cluster/home/${LOGNAME}/bin:/usr/bin/X11:/cluster/home/${LOGNAME}/bin:/cluster/home/${LOGNAME}/bin/${MACHTYPE}

export MACHINE_NAME=`uname -n`

if [ "hgwdev" != "${MACHINE_NAME}" ]; then
    echo "ERROR: must be run on hgwdev, this machine is: ${MACHINE_NAME}"
    exit 255;
fi

if [ -z "${USER}" ]; then
	USER=${LOGNAME}
	export USER
fi

#	better to clean source tree before updating it, this will lead
#	to a cleaner report
cd ~/kent/src
make clean > /dev/null 2> /dev/null
rm -f tags

# not necessary, but this is where it is happening
cd ~/kent

/usr/bin/git pull 2>&1 | \
	mail -s 'GIT update report kent' ${LOGNAME}
#	And then, let's build it all
cd ~/kent/src
MAKE="make -j 4" make -j 4 cgi > daily.out 2>&1
#	If there are any errors, they will come via separate email from cron
egrep -y "erro|warn" daily.out | grep -v "\-Werror" | \
	egrep -v "disabling jobserver mode|gbExtFile.o gbWarn.o gbMiscDiff.o|-o hgTracks"
make tags-all > /dev/null 2> /dev/null