User contributions for Rhead
From Genecats
Jump to navigationJump to search
29 August 2013
- 09:0909:09, 29 August 2013 diff hist +4,463 Scripting standards fleshed out everything current
31 July 2013
- 01:5701:57, 31 July 2013 diff hist +1,862 N Scripting standards this is a start . . . basically pasting in notes
24 July 2013
- 02:2902:29, 24 July 2013 diff hist +1,541 CGI Testing →hgVai: added instructions for testing hgVai
11 July 2013
- 02:1602:16, 11 July 2013 diff hist +52 Checking RR status through hgTracksRandom updated to reflect switch of job to qateam's crontab on hgwdev. (http://redmine.soe.ucsc.edu/issues/9708#note-33)
2 July 2013
- 22:5622:56, 2 July 2013 diff hist +176 Static content for new assemblies →Browser tree:: changed instructions for newsarch.html and indexNews.html to reflect current practice
1 July 2013
- 17:5217:52, 1 July 2013 diff hist 0 Sample .bashrc No edit summary
- 07:5207:52, 1 July 2013 diff hist +121 Sample .bashrc added categories
- 07:5007:50, 1 July 2013 diff hist +21 Training new Browser Staff →Logistics: added link to new sample .bashrc page
- 07:4807:48, 1 July 2013 diff hist +434 Sample .bashrc No edit summary
- 07:4007:40, 1 July 2013 diff hist +2,891 N Sample .bashrc Created page with " <pre> # Source global definitions if [ -f /etc/bashrc ]; then . /etc/bashrc fi # get colors on ls in emacs! alias ls='ls --color=auto' # various command shortcuts alias og='l..."
29 June 2013
- 02:2902:29, 29 June 2013 diff hist 0 m Training new Browser Staff →Logistics: typo
14 June 2013
- 08:0208:02, 14 June 2013 diff hist +14 Monitoring Tasks filled in missing information for checkGenomeMysql
31 May 2013
- 00:2700:27, 31 May 2013 diff hist +274 Updating blat servers added notes about genome-euro
30 May 2013
- 23:5623:56, 30 May 2013 diff hist +1,019 Outdated instructions for releasing an assembly added new section about genome-euro and the pullHgcentral script
28 May 2013
- 22:1022:10, 28 May 2013 diff hist −13 Public Hub QA →Stage the hub on Beta: took out the direction to run hubPublicCheck on beta . . . confirmed w/ braney that it doesn't matter where it is run
13 May 2013
- 21:2521:25, 13 May 2013 diff hist +77 CGI Testing →hgTables: added MAF as a "weird" hgTables type
5 April 2013
- 23:3223:32, 5 April 2013 diff hist +162 Outdated instructions for releasing an assembly →Review all tracks in the sub-pushQ: pointed out that several checks are done for all tracks at once in these instructions
- 23:2323:23, 5 April 2013 diff hist +222 Outdated instructions for releasing an assembly →Review all tracks in the sub-pushQ: added link to new track checklist and a note that Restr Enzyme and Short Match tracks don't need to be QAed
- 23:0723:07, 5 April 2013 diff hist +34 Outdated instructions for releasing an assembly →Review all tracks in the sub-pushQ: added links to genbank and ensembl pages
- 22:3422:34, 5 April 2013 diff hist −86 Outdated instructions for releasing an assembly →joinerCheck: removed redundant change directory commands
- 22:3422:34, 5 April 2013 diff hist +151 Outdated instructions for releasing an assembly →Check that common keys between tables are in sync: added a check for times
- 22:2622:26, 5 April 2013 diff hist +132 Outdated instructions for releasing an assembly →Check that it is not symlink on hgnfs1, that there is only one file, and is not in a subdirectory: pointed out that you can check whether a file is a symlink on hgnfs1 by looking at it on hgwbeta
- 00:2200:22, 5 April 2013 diff hist −1 CBSE citation format removed confusing period after PMID and PMCID
- 00:2100:21, 5 April 2013 diff hist −1 CBSE citation format →Basic format: whoops, no period needed
4 April 2013
- 22:3722:37, 4 April 2013 diff hist +17 CBSE citation format →Basic format: added PMID to basic format example
22 March 2013
- 23:1223:12, 22 March 2013 diff hist −177 Outdated instructions for releasing an assembly →genomeClade and gdbPdb: got rid of gdbPdb reference and reworded
- 23:0823:08, 22 March 2013 diff hist −67 Outdated instructions for releasing an assembly →blatServers: reword
- 22:2522:25, 22 March 2013 diff hist −65 Outdated instructions for releasing an assembly →Push the database and tables from hgwdev to hgwbeta: removed instruction to drop user-specific trackDb and hgFindSpec tables when the list comes from the pushQ
20 March 2013
- 23:4223:42, 20 March 2013 diff hist +212 QAing UCSC Genes →joinerCheck: added note to make sure kg{N}ToKg{N+1} is in all.joiner
13 March 2013
- 17:5417:54, 13 March 2013 diff hist +211 Pushing trackDb →Files: Added push of cv.ra to hgdownload, as requested in http://redmine.soe.ucsc.edu/issues/10346.
24 January 2013
- 18:4218:42, 24 January 2013 diff hist +52 Creating a pushQ Entry No edit summary
4 December 2012
- 01:2001:20, 4 December 2012 diff hist −42 CGI testing responsibilities →Brooke: moved hgLogin to the "test only if it has changed" category, per Chin.
21 November 2012
- 19:1419:14, 21 November 2012 diff hist +188 Outdated instructions for releasing an assembly →Double-check /gbdb files: added note about using "ls -lL" to see timestamps
20 November 2012
- 19:1019:10, 20 November 2012 diff hist +51 Outdated instructions for releasing an assembly →Update hgcentral: clarified note about updating defaultDb
6 November 2012
- 19:3219:32, 6 November 2012 diff hist +128 Outdated instructions for releasing an assembly →Adjust the release log in main pushQ: added note about consensus on not listing downloads
15 October 2012
- 19:0919:09, 15 October 2012 diff hist +278 Ensembl QA No edit summary
11 October 2012
- 19:3519:35, 11 October 2012 diff hist +8 m Minimal browser fixed path to organism.lst
- 19:3019:30, 11 October 2012 diff hist +7 m Minimal browser No edit summary
- 19:3019:30, 11 October 2012 diff hist +58 Minimal browser changed genbank tracks required per discussion w/ braney and jim (also http://redmine.soe.ucsc.edu/issues/7668)
8 October 2012
- 21:3221:32, 8 October 2012 diff hist +58 Minimal browser added categories
- 21:3121:31, 8 October 2012 diff hist −69 Checking RR status through hgTracksRandom removed the "training" categories from this page, since most people don't need to worry about hgTracksRandom
5 October 2012
- 23:3623:36, 5 October 2012 diff hist +54 GenBank QA →Other checks: linked to minimal browser page
- 01:2001:20, 5 October 2012 diff hist −72 New track checklist took out pre-QA labels
12 September 2012
- 18:1718:17, 12 September 2012 diff hist +99 Checking RR status through hgTracksRandom added link to cacti graphs, fixed a typo, added greg to the crontab snippet
29 August 2012
- 23:5123:51, 29 August 2012 diff hist −10 CGI testing responsibilities removed "tests and" from "tests and tracks issues for hgTracks" -- the testing is part of the hgTracks tester's job
- 23:5023:50, 29 August 2012 diff hist +95 CGI testing responsibilities made it more clear that hgTracks needs to be tested every time
- 00:1000:10, 29 August 2012 diff hist +109 Ensembl QA clarified the moving of lines in the trackVersion table based on steve, hiram, and pauline's input
28 August 2012
- 23:5723:57, 28 August 2012 diff hist +241 Outdated instructions for releasing an assembly added note to push hgFixed tables
24 August 2012
- 03:1203:12, 24 August 2012 diff hist 0 Outdated instructions for releasing an assembly →Update hgcentralbeta: moved liftOverChain bit after defaultDb bit
18 August 2012
- 00:4100:41, 18 August 2012 diff hist +89 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added a link to Wellcome's interactive tree of life
