Outdated instructions for releasing an assembly: Revision history

13 June 2012

• curprev 17:3517:35, 13 June 2012‎ Ann talk contribs‎ 31,573 bytes −698‎ →‎Check to ensure that there are enough tracks to be considered at least a "minimal" browser (batches)

14 May 2012

• curprev 23:3723:37, 14 May 2012‎ Greg talk contribs‎ m 32,271 bytes +12‎ →‎Update hgcentral: added "(if needed)" next to genomeClade
• curprev 23:1223:12, 14 May 2012‎ Rhead talk contribs‎ 32,259 bytes +3‎ →‎Push image file to hgwbeta and rr: changed to specify push from beta to rr, not dev

27 April 2012

• curprev 19:1919:19, 27 April 2012‎ Katrina talk contribs‎ 32,256 bytes −380‎ →‎Review the phylogenetic location in pull-down menus on hgGateway (batches*): removing (batches) because it is encompassed in a higher level
• curprev 19:1819:18, 27 April 2012‎ Katrina talk contribs‎ 32,636 bytes +10‎ →‎Stage assembly on hgwbeta
• curprev 19:1719:17, 27 April 2012‎ Katrina talk contribs‎ 32,626 bytes +10‎ →‎Check to ensure that there are enough tracks to be considered at least a "minimal" browser
• curprev 19:1719:17, 27 April 2012‎ Katrina talk contribs‎ 32,616 bytes +10‎ →‎Check that any chain/net/liftOvers listed in the pushQ are to valid assemblies on the RR
• curprev 19:1719:17, 27 April 2012‎ Katrina talk contribs‎ 32,606 bytes +359‎ →‎Check if chromosome sizes have changed significantly: adding info about doing this in batches
• curprev 19:1319:13, 27 April 2012‎ Katrina talk contribs‎ 32,247 bytes +380‎ →‎Review the phylogenetic location in pull-down menus on hgGateway
• curprev 19:0419:04, 27 April 2012‎ Katrina talk contribs‎ 31,867 bytes +156‎ →‎Review the phylogenetic location in pull-down menus on hgGateway

24 April 2012

• curprev 22:4522:45, 24 April 2012‎ Kuhn talk contribs‎ 31,711 bytes +146‎ →‎Push image file to hgwbeta and rr
• curprev 22:2722:27, 24 April 2012‎ Katrina talk contribs‎ 31,565 bytes −697‎ →‎Stage assembly on Round Robin: no longer warning mirrors of new assembly releases
• curprev 19:5819:58, 24 April 2012‎ Katrina talk contribs‎ 32,262 bytes −334‎ →‎Test on hgwbeta: removing checking sample queries, gateway page will point to NCBI & sample queries will be on a single common page (http://redmine.soe.ucsc.edu/issues/7751)
• curprev 19:5019:50, 24 April 2012‎ Katrina talk contribs‎ 32,596 bytes −625‎ →‎Pre-staging of assembly on hgwbeta: removing step to create a ticket for the N-scan prediction track, engineers will be handling this

23 April 2012

• curprev 20:4320:43, 23 April 2012‎ Rhead talk contribs‎ 33,221 bytes −10‎ moved pressing the done button in the push queue to the end
• curprev 20:3120:31, 23 April 2012‎ Ann talk contribs‎ 33,231 bytes −195‎ →‎Add assembly to mirror exclude list
• curprev 20:3120:31, 23 April 2012‎ Ann talk contribs‎ 33,426 bytes −235‎ →‎Ask the pushers to remove assembly from mirror "exclude" list
• curprev 20:3020:30, 23 April 2012‎ Ann talk contribs‎ 33,661 bytes −227‎ →‎Verify that liftOvers are in liftOvers directories and not in vs* Directories
• curprev 20:1920:19, 23 April 2012‎ Rhead talk contribs‎ 33,888 bytes 0‎ moved check for phylogenetic order to staging section
• curprev 20:1920:19, 23 April 2012‎ Ann talk contribs‎ 33,888 bytes −251‎ →‎Check indices: removed (per Jim)

16 March 2012

• curprev 21:1621:16, 16 March 2012‎ Ann talk contribs‎ 34,139 bytes +76‎ →‎Check to ensure that there are enough tracks to be considered at least a "minimal" browser

9 March 2012

• curprev 22:0722:07, 9 March 2012‎ Greg talk contribs‎ 34,063 bytes +39‎ →‎Verify makedoc for all the tracks listed in the pushQ: Added example for updating all makedoc entries at once.
• curprev 19:2619:26, 9 March 2012‎ Greg talk contribs‎ m 34,024 bytes +5‎ →‎Check that all 3 copies of the .2bit file (gbdb, downloads, blat servers) are identical: put locations in a bullet list for easier reading
• curprev 19:1319:13, 9 March 2012‎ Greg talk contribs‎ m 34,019 bytes +1‎ →‎Turn on GenBank updates: added tilda before /kent/src/
• curprev 18:5118:51, 9 March 2012‎ Greg talk contribs‎ m 34,018 bytes −12‎ →‎dbDb: fixed incorrect wording

31 January 2012

• curprev 19:3119:31, 31 January 2012‎ Ann talk contribs‎ 34,030 bytes +12‎ →‎Check to ensure that there are enough tracks to be considered at least a "minimal" browser

30 January 2012

• curprev 20:2720:27, 30 January 2012‎ Ann talk contribs‎ 34,018 bytes +81‎ →‎Check to ensure that there are enough tracks to be considered at least a "minimal" browser
• curprev 20:1920:19, 30 January 2012‎ Ann talk contribs‎ 33,937 bytes +647‎ minimal browser

23 January 2012

• curprev 23:4823:48, 23 January 2012‎ Luvina talk contribs‎ 33,290 bytes +134‎ →‎Ask the pushers to remove assembly from mirror "exclude" list
• curprev 23:4823:48, 23 January 2012‎ Luvina talk contribs‎ 33,156 bytes −134‎ →‎Verify again that everything is working as expected on the RR

18 January 2012

• curprev 17:1017:10, 18 January 2012‎ Ann talk contribs‎ 33,290 bytes +407‎ NCBI Assembly database link

10 January 2012

• curprev 18:5718:57, 10 January 2012‎ Mary talk contribs‎ m 32,883 bytes +205‎ →‎Create a ticket in redmine for an N-Scan prediction track for this assembly: adding data requirements for making an N-Scan track, per Jeltje's request

22 November 2011

• curprev 00:0800:08, 22 November 2011‎ Steve talk contribs‎ 32,678 bytes +110‎ Changed /cluster/home/[yourname] to ~/. Added another note about the md5sum.txt file being sorted.

21 November 2011

• curprev 23:5823:58, 21 November 2011‎ Steve talk contribs‎ 32,568 bytes +737‎ Added line about automating the comparison of md5sum with md5sum.txt

15 November 2011

• curprev 21:5021:50, 15 November 2011‎ Steve talk contribs‎ 31,831 bytes +10‎ Added "tableList" to the list of tables to be dropped once the tables are pushed to beta

2 November 2011

• curprev 02:4502:45, 2 November 2011‎ Rhead talk contribs‎ 31,821 bytes −530‎ →‎Verify that the number of records in the upstream*.zip files is consistent: removed! These are made by an automated process now, and are less prone to error.

1 November 2011

• curprev 19:5719:57, 1 November 2011‎ Rhead talk contribs‎ 32,351 bytes +356‎ →‎Read and verify READMEs: added an instruction to check the genbank.conf file against the upstream* readme
• curprev 19:5519:55, 1 November 2011‎ Rhead talk contribs‎ 31,995 bytes +280‎ →‎Next day follow-up: added note to check for genbank-generated downloads

31 October 2011

• curprev 19:0319:03, 31 October 2011‎ Rhead talk contribs‎ 31,715 bytes +145‎ →‎Turn on GenBank updates: changed mark -> brian; added etc-update-server to the make per brian
• curprev 19:0019:00, 31 October 2011‎ Rhead talk contribs‎ 31,570 bytes +92‎ →‎Verify downloads: clarified how automatic downloads show up

27 October 2011

• curprev 19:0119:01, 27 October 2011‎ Rhead talk contribs‎ 31,478 bytes −99‎ →‎Verify downloads: clarification on automatic downloads from mark
• curprev 03:5703:57, 27 October 2011‎ Rhead talk contribs‎ 31,577 bytes +31‎ →‎Pre-staging of assembly on hgwbeta: added instruction to claim the redmine ticket in addition to claiming the assembly in the push queue
• curprev 03:5503:55, 27 October 2011‎ Rhead talk contribs‎ 31,546 bytes +135‎ changed instructions for n-scan request from emailing markd and jeltje to making a redmine ticket and assigning it to mark
• curprev 03:4603:46, 27 October 2011‎ Rhead talk contribs‎ 31,411 bytes +406‎ →‎Verify downloads: added note about the genbank downloads that get automatically generated.
• curprev 03:3803:38, 27 October 2011‎ Rhead talk contribs‎ 31,005 bytes +247‎ →‎Verify that the number of records in the upstream*.zip files is consistent: added instructions to count the records in each file without unzipping

19 April 2011

• curprev 22:4822:48, 19 April 2011‎ Greg talk contribs‎ 30,758 bytes +325‎ →‎defaultDb: Added text with instructions for organisms which are not currently on our browser. (i.e. there's nothing to UPDATE, you need to INSERT.
• curprev 21:5821:58, 19 April 2011‎ Greg talk contribs‎ 30,433 bytes +4‎ →‎genomeClade and gdbPdb: Organized section (again). ;-)
• curprev 21:5521:55, 19 April 2011‎ Greg talk contribs‎ 30,429 bytes +169‎ →‎genomeClade and gdbPdb: Further rearranging text and adding additional information for QA'er.
• curprev 21:2221:22, 19 April 2011‎ Greg talk contribs‎ 30,260 bytes +36‎ →‎genomeClade and gdbPdb: Reorganized adn Added text for clarification.

• curprev 21:1121:11, 19 April 2011‎ Greg talk contribs‎ m 30,224 bytes +2‎ →‎dbDb: Corrected terminal prompt to say hgwbeta for last two steps.