GenbankServiceLog: Difference between revisions
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(Created page with "This page is a record of service on the genbank process. == allowLargeDeletes problem --- May 25, 2012 ==") |
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== allowLargeDeletes problem --- May 25, 2012 == | == allowLargeDeletes problem --- May 25, 2012 == | ||
Symptom: dbload fails with "Stoping due to maxShrinkage limit being exceeded in one or more | |||
partitions. Investigate and rerun with -allowLargeDeletes." | |||
Solution: discovered four assemblies that were missing their full directory in either refSeq.53/<db>/ or genbank.189.0/<db>. No explanation was found for the missing directories. To restore these four assemblies (sacCer1,sacCer2,sacCer3,ce2) I built the alignments from scratch using bin/gbDbAlignStep -initial <db> | |||
Revision as of 23:39, 30 May 2012
This page is a record of service on the genbank process.
allowLargeDeletes problem --- May 25, 2012
Symptom: dbload fails with "Stoping due to maxShrinkage limit being exceeded in one or more partitions. Investigate and rerun with -allowLargeDeletes."
Solution: discovered four assemblies that were missing their full directory in either refSeq.53/<db>/ or genbank.189.0/<db>. No explanation was found for the missing directories. To restore these four assemblies (sacCer1,sacCer2,sacCer3,ce2) I built the alignments from scratch using bin/gbDbAlignStep -initial <db>
