Monitoring Tasks: Difference between revisions
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m (oops, changed one of the crons of braney's that isn't an otto track. It will still run daily) |
(updated tasks responsibilities starting Aug 2014) |
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| Line 16: | Line 16: | ||
<td>ask Galt/Jim about blat updates</td> | <td>ask Galt/Jim about blat updates</td> | ||
<td>3x per year</td> | <td>3x per year</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Pauline, Steve, Jonathan</td> | <td>Pauline, Steve, Jonathan</td> | ||
<td>Pauline, Steve, Jonathan</td> | <td>Pauline, Steve, Jonathan</td> | ||
| Line 24: | Line 24: | ||
<td>Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be.</td> | <td>Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be.</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Steve</td> | <td>Steve</td> | ||
| Line 32: | Line 32: | ||
<td>Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report.</td> | <td>Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report.</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>Matt</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
<td>Steve</td> | <td>Steve</td> | ||
| Line 40: | Line 40: | ||
<td>receive output from hgTracksRandom cron; alert admins to problems</td> | <td>receive output from hgTracksRandom cron; alert admins to problems</td> | ||
<td>as needed</td> | <td>as needed</td> | ||
<td></td> | <td>many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | ||
<td>many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | <td>many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | ||
<td>many: kuhn, rhead, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper</td> | <td>many: kuhn, rhead, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper</td> | ||
| Line 48: | Line 48: | ||
<td>receive output from gbLoaded cron job and alert braney if anything seems very outdated</td> | <td>receive output from gbLoaded cron job and alert braney if anything seems very outdated</td> | ||
<td>daily, problems every 3-6 months</td> | <td>daily, problems every 3-6 months</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Steve, Jonathan</td> | <td>Brooke, Steve, Jonathan</td> | ||
| Line 56: | Line 56: | ||
<td>receive output from showProcesslist.csh</td> | <td>receive output from showProcesslist.csh</td> | ||
<td>daily, no action</td> | <td>daily, no action</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Steve, Jonathan</td> | <td>Brooke, Steve, Jonathan</td> | ||
| Line 64: | Line 64: | ||
<td>get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job)</td> | <td>get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job)</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Steve, Jonathan</td> | <td>Brooke, Steve, Jonathan</td> | ||
| Line 72: | Line 72: | ||
<td>get an email from backupCentral.csh each month (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834)</td> | <td>get an email from backupCentral.csh each month (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834)</td> | ||
<td>monthly</td> | <td>monthly</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Steve, Jonathan</td> | <td>Brooke, Steve, Jonathan</td> | ||
| Line 80: | Line 80: | ||
<td>receive an email on additions and subtractions to files in /gbdb on hgnfs1</td> | <td>receive an email on additions and subtractions to files in /gbdb on hgnfs1</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Steve, Jonathan</td> | <td>Brooke, Steve, Jonathan</td> | ||
| Line 88: | Line 88: | ||
<td>receive an email from cron if qateam DailySandboxUpdate fails</td> | <td>receive an email from cron if qateam DailySandboxUpdate fails</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Steve, Jonathan</td> | <td>Brooke, Steve, Jonathan</td> | ||
| Line 96: | Line 96: | ||
<td>receive output from checkMetaAday.csh; alert (steve, jcasper) if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day)</td> | <td>receive output from checkMetaAday.csh; alert (steve, jcasper) if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day)</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
| Line 104: | Line 104: | ||
<td>receive output from syncAday.csh; alert (steve, jcasper) if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) </td> | <td>receive output from syncAday.csh; alert (steve, jcasper) if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) </td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
| Line 112: | Line 112: | ||
<td>get output from checkGenomeMysql</td> | <td>get output from checkGenomeMysql</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Steve, Jonathan</td> | <td>Brooke, Steve, Jonathan</td> | ||
| Line 118: | Line 118: | ||
<tr> | <tr> | ||
<td | <td>hubPublicCheck complains when the hubPublic table doesn't have the same strings as the actual hub.txt file.</td> | ||
<td>runs daily, complains rarely?</td> | <td>runs daily, complains rarely?</td> | ||
<td></td> | <td>Brian Lee</td> | ||
<td>Brian Lee</td> | <td>Brian Lee</td> | ||
<td>braney</td> | <td>braney</td> | ||
| Line 162: | Line 126: | ||
<tr> | <tr> | ||
<td> | <td>omimWrapper.sh checks for new OMIM data and downloads and loads it into hgwdev if so</td> | ||
<td>runs weekly, complains bi-weekly</td> | <td>runs weekly, complains bi-weekly</td> | ||
<td></td> | <td>Brian Lee</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
| Line 170: | Line 134: | ||
<tr> | <tr> | ||
<td>omimUploadWrapper.sh uploads the OMIM tables to OMIM</td> | |||
<td> | |||
<td>runs weekly, complains rarely</td> | <td>runs weekly, complains rarely</td> | ||
<td></td> | <td>Brian Lee</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
| Line 179: | Line 142: | ||
<tr> | <tr> | ||
<td> | <td>decipherWrapper.sh checks for new DECIPHER data and downloads and loads it into hgwdev if so</td> | ||
<td>runs weekly, complains monthly</td> | <td>runs weekly, complains monthly</td> | ||
<td></td> | <td>Luvina</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
| Line 187: | Line 150: | ||
<tr> | <tr> | ||
<td> | <td>iscoWrapper.sh checks for new ISCA data and downloads and loads it into hgwdev if so</td> | ||
<td>runs weekly, complains monthly</td> | <td>runs weekly, complains monthly</td> | ||
<td></td> | <td>Steve</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
| Line 195: | Line 158: | ||
<tr> | <tr> | ||
<td> | <td>gwasWrapper.sh checks for new GWAS data and downloads and loads it into hgwdev if so</td> | ||
<td>runs weekly, complains quarterly</td> | <td>runs weekly, complains quarterly</td> | ||
<td></td> | <td>Jonathan</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
| Line 203: | Line 166: | ||
<tr> | <tr> | ||
<td> | <td>geneReviewsWrapper.sh checks for new GeneReviews data and downloads and loads it into hgwdev if so</td> | ||
<td>runs weekly, complains quarterly</td> | <td>runs weekly, complains quarterly</td> | ||
<td></td> | <td>Matt</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td> | <td>sends a reminder to check the list of folks who have mirror sites. This list is created by a script of Hiram's and located here: http://genome-test.cse.ucsc.edu/admin/tools/useCount.html. The information comes from the phoneHome program in the CGIs. Sometimes companies set up mirrors, which is not OK.</td> | ||
<td>monthly</td> | <td>monthly</td> | ||
<td></td> | <td>Matt</td> | ||
<td>Pauline</td> | <td>Pauline</td> | ||
<td>Ann</td> | <td>Ann</td> | ||
</tr> | |||
<tr> | |||
<td colspan="5" style="background-color:gray"><b>from build cron</b></td> | |||
</tr> | |||
<tr> | |||
<td>receive cron output for tableDescriptions build errors</td> | |||
<td>rare</td> | |||
<td>Steve, Luvina</td> | |||
<td>Pauline, Matt</td> | |||
<td>Brooke, Pauline</td> | |||
</tr> | |||
<tr> | |||
<td colspan="5" style="background-color:gray"><b>from galt's cron</b></td> | |||
</tr> | |||
<tr> | |||
<td>run ReleaseLog script (this requires a copy of the kent repository)</td> | |||
<td>daily</td> | |||
<td>Galt</td> | |||
<td>Galt (if QA takes this over, Pauline will do it)</td> | |||
<td>Galt</td> | |||
</tr> | |||
<tr> | |||
<td>back up the qapushq</td> | |||
<td>every 30 minutes during the work day/week</td> | |||
<td>Galt</td> | |||
<td>Galt</td> | |||
<td>Galt</td> | |||
</tr> | </tr> | ||
| Line 228: | Line 220: | ||
<td>Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible.</td> | <td>Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible.</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>Luvina</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
<td>Steve</td> | <td>Steve</td> | ||
| Line 236: | Line 228: | ||
<td>update sla.html whenever we have RR downtime</td> | <td>update sla.html whenever we have RR downtime</td> | ||
<td>hopefully, not much!</td> | <td>hopefully, not much!</td> | ||
<td></td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Brooke, Pauline</td> | <td>Brooke, Pauline</td> | ||
| Line 244: | Line 236: | ||
<td>update crontab in genecats/qa/crontabs/*.crontab (and [http://genomewiki.cse.ucsc.edu/genecats/index.php/Updating_QA_crontabs log in as qateam and restart the qateam crontab] with updates)</td> | <td>update crontab in genecats/qa/crontabs/*.crontab (and [http://genomewiki.cse.ucsc.edu/genecats/index.php/Updating_QA_crontabs log in as qateam and restart the qateam crontab] with updates)</td> | ||
<td>as needed</td> | <td>as needed</td> | ||
<td></td> | <td>Jonathan</td> | ||
<td>Pauline, Jonathan</td> | <td>Pauline, Jonathan</td> | ||
<td>Brooke, Pauline</td> | <td>Brooke, Pauline</td> | ||
| Line 252: | Line 244: | ||
<td>update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address</td> | <td>update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address</td> | ||
<td>rarely</td> | <td>rarely</td> | ||
<td></td> | <td>Matt</td> | ||
<td>Bob</td> | <td>Bob</td> | ||
<td>Ann</td> | <td>Ann</td> | ||
Revision as of 20:39, 7 August 2014
| task | frequency | who NOW (starting Aug '14) | who Aug '13 - Jul '14 | who before |
|---|---|---|---|---|
| from qateam cron | ||||
| ask Galt/Jim about blat updates | 3x per year | Steve, Jonathan | Pauline, Steve, Jonathan | Pauline, Steve, Jonathan |
| Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be. | daily | Matt | Matt | Steve |
| Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report. | weekly | Matt | Luvina | Steve |
| receive output from hgTracksRandom cron; alert admins to problems | as needed | many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt | many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt | many: kuhn, rhead, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper |
| receive output from gbLoaded cron job and alert braney if anything seems very outdated | daily, problems every 3-6 months | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive output from showProcesslist.csh | daily, no action | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job) | weekly | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| get an email from backupCentral.csh each month (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834) | monthly | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive an email on additions and subtractions to files in /gbdb on hgnfs1 | daily | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive an email from cron if qateam DailySandboxUpdate fails | daily | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| receive output from checkMetaAday.csh; alert (steve, jcasper) if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day) | daily | Matt | Matt | Luvina |
| receive output from syncAday.csh; alert (steve, jcasper) if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) | daily | Brian | Brian | Luvina |
| get output from checkGenomeMysql | daily | Steve, Jonathan | Steve, Jonathan | Brooke, Steve, Jonathan |
| hubPublicCheck complains when the hubPublic table doesn't have the same strings as the actual hub.txt file. | runs daily, complains rarely? | Brian Lee | Brian Lee | braney |
| omimWrapper.sh checks for new OMIM data and downloads and loads it into hgwdev if so | runs weekly, complains bi-weekly | Brian Lee | braney | braney |
| omimUploadWrapper.sh uploads the OMIM tables to OMIM | runs weekly, complains rarely | Brian Lee | braney | braney |
| decipherWrapper.sh checks for new DECIPHER data and downloads and loads it into hgwdev if so | runs weekly, complains monthly | Luvina | braney | braney |
| iscoWrapper.sh checks for new ISCA data and downloads and loads it into hgwdev if so | runs weekly, complains monthly | Steve | braney | braney |
| gwasWrapper.sh checks for new GWAS data and downloads and loads it into hgwdev if so | runs weekly, complains quarterly | Jonathan | braney | braney |
| geneReviewsWrapper.sh checks for new GeneReviews data and downloads and loads it into hgwdev if so | runs weekly, complains quarterly | Matt | braney | braney |
| sends a reminder to check the list of folks who have mirror sites. This list is created by a script of Hiram's and located here: http://genome-test.cse.ucsc.edu/admin/tools/useCount.html. The information comes from the phoneHome program in the CGIs. Sometimes companies set up mirrors, which is not OK. | monthly | Matt | Pauline | Ann |
| from build cron | ||||
| receive cron output for tableDescriptions build errors | rare | Steve, Luvina | Pauline, Matt | Brooke, Pauline |
| from galt's cron | ||||
| run ReleaseLog script (this requires a copy of the kent repository) | daily | Galt | Galt (if QA takes this over, Pauline will do it) | Galt |
| back up the qapushq | every 30 minutes during the work day/week | Galt | Galt | Galt |
| non-cron jobs | ||||
| Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible. | weekly | Luvina | Luvina | Steve |
| update sla.html whenever we have RR downtime | hopefully, not much! | Steve, Jonathan | Steve, Jonathan | Brooke, Pauline |
| update crontab in genecats/qa/crontabs/*.crontab (and log in as qateam and restart the qateam crontab with updates) | as needed | Jonathan | Pauline, Jonathan | Brooke, Pauline |
| update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address | rarely | Matt | Bob | Ann |
| ENCODE | ||||
| Check genome-preview with Selenium test, ensures various big ENCODE tracks are accessible, and that machine is still running | weekly | Brian | Brian | Brian |
| Receive validation checks on ENCODE cv.ra metadata, but won't change unless cv.ra changes | rare/never | Brian | Brian | Brian |
| Update broken links from cron on hgEncodeVocab/cv.ra checkLinks | rare, fixes needed about once a month | Brian | Brian | Brian |
