Monitoring Tasks: Difference between revisions

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<td>check that the [http://genome.ucsc.edu/cgi-bin/hgBeacon beacon server] is running</td>
<td>check that the [https://genomicsandhealth.org/work-products-demonstration-projects/beacon-project-0 ga4gh] [http://genome.ucsc.edu/cgi-bin/hgBeacon beacon server] is running</td>
<td>daily</td>
<td>daily</td>
<td>Cath</td>
<td>Cath</td>

Revision as of 17:55, 25 July 2016

task frequency who NOW who Aug '14 - Aug '15-Apr'16 who Aug '13 - Jul '14 before
from hgwdev qateam cron
ask Galt/Jim about blat updates 3x per year Cath, Brian Steve, Jonathan Pauline, Steve, Jonathan Pauline, Steve, Jonathan
Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be. daily Cath, Matt Matt Matt Steve
Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report. weekly Cath Matt Luvina Steve
receive output from hgTracksRandom cron; alert admins to problems as needed many: cath, christopher, kuhn, brianlee, braney, luvina, gary, ann,, jcasper, matt many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt many: kuhn, rhead, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper
receive output from gbLoaded cron job and alert braney if anything seems very outdated daily, problems every 3-6 months Cath, Luvina Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
receive output from showProcesslist.csh daily, no action Brian, Matt Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job) weekly Brian, Jonathan Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
get an email from backupCentral.csh each month that keeps a dump of hgcentral tables (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834) monthly Matt, Brian Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
receive an email on additions and subtractions to files in /gbdb on hgnfs1 daily Christopher, Luvina Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
receive an email from cron if qateam DailySandboxUpdate fails daily Matt, Brian Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
receive output from checkMetaAday.csh; alert; if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day) Instructions & Example daily Cath, Matt Matt Matt Luvina
receive output from syncAday.csh; alert; if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) daily Brian Brian Brian Luvina
increment databaseAday, /cluster/bin/scripts/databaseAday.csh problems only Brian, Jonathan Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
checkHgFindSpec -checkTermRegex, /cluster/bin/scripts/runCheckHgFindSpec go problems only Brian, Jonathan Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
check to see if there are new files to go with the CGI push /cluster/home/qateam/bin/scripts/findCgiFiles.csh go problems only Brian, Jonathan Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
get output from checkGenomeMysql daily Christopher, Matt Steve, Jonathan Steve, Jonathan Brooke, Steve, Jonathan
Check for unigene update for human SAGE track daily Luvina, Braney Steve, Braney
look for broken symlinks in /gbdb: daily Browser Staff Browser Staff
look for broken symlinks in in (very large) visiGene directory twice yearly Cath, Galt Steve, Galt
look for broken symlinks in htdocs-hgdownload/goldenpath daily Browser Staff Browser Staff
Check the source tree for duplicate case-independent filenames. These wreck havoc with git. daily Browser Staff Browser Staff
Check to see what kind of browsers and o/s people are using to access the public website weekly Ann, Christopher, Brian Ann, Steve
run /cluster/bin/scripts/sessionStats.csh monthly Angie, Brian, Bob Angie, Brian, Bob, Steve
check that the ga4gh beacon server is running daily Cath Ann Ann
check that blat servers are running ok ongoing Ann, Brian, Donna, Galt, Luvina, Matt, Gary, Ann, Brian, Donna, Galt, Luvina, Steve, Gary
check that beta builds alright 3x week Brian, Christopher,Braney Steve, Jonathan, Braney
hubPublicCheck complains when the hubPublic table doesn't have the same strings as the actual hub.txt file. (NOTE: To run only on Beta hubs requires these declarations: export HGDB_CONF=$HOME/.hg.conf.beta and SHELL=/bin/sh). runs daily, complains rarely Matt Brian Brian braney
email request to build doPublicCrawl public.ix and public.ixx hub search files and push them. runs quarterly Christopher
Cronjob reports checkUrlsInTable hg38 wgEncodeCell and cv.ra (likely infrequent results) weekly Christopher Brian Brian Brian
sends a reminder to check the list of folks who have mirror sites. This list is created by a script of Hiram's and located here: http://genome-test.cse.ucsc.edu/admin/tools/useCount.html. The information comes from the phoneHome program in the CGIs. Sometimes companies set up mirrors, which is not OK. monthly Brian, Luvina Matt Pauline Ann
checkGbibMd5.sh compares the md5sum of gbibBeta.zip on dev with the sum for gbib.zip on genome-store, complaining if they don't match (and it's not during final build) runs weekly on Thursday Brian, Cath, Jonathan Brian, Steve, Jonathan - -
Curl of http://genomewiki.ucsc.edu/index.php/Assembly_Hubs to test Public Wiki is accessible, output only if no response. hourly Brian Brian - -
from build cron
receive cron output for tableDescriptions build errors rare Luvina Steve, Luvina Pauline, Matt Brooke, Pauline
from galt's cron
run ReleaseLog script (this requires a copy of the kent repository) daily Galt Galt Galt Galt
back up the qapushq every 30 minutes M-F Galt Galt Galt Galt
non-cron jobs
Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible. weekly Luvina Luvina Luvina Steve
update sla.html whenever we have RR downtime. See wiki procedures hopefully, not much! Cath, Luvina Steve, Jonathan Steve, Jonathan Brooke, Pauline
update crontab in genecats/qa/crontabs/*.crontab (and log in as qateam and restart the qateam crontab with updates) as needed Brian Jonathan Pauline, Jonathan Brooke, Pauline
update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address rarely Matt Matt Bob Ann
Check genome-preview machine is still running biweekly Brian Brian Brian Brian
Updated Facebook with Announcements As needed Brian Brian
Update Twitter with Announcements As needed Brian Ann
otto cron jobs (/hive/data/outside/otto)
omimWrapper.sh checks for new OMIM data and downloads and loads it into hgwdev if so runs weekly, complains bi-weekly braney braney braney
omimUploadWrapper.sh uploads the OMIM tables to OMIM runs weekly, complains rarely braney braney braney
decipherWrapper.sh checks for new DECIPHER data and downloads and loads it into hgwdev if so runs weekly, complains monthly braney braney braney
iscaWrapper.sh checks for new ISCA data and downloads and loads it into hgwdev if so runs weekly, complains monthly jcasper braney braney braney
gwasWrapper.sh checks for new GWAS data and downloads and loads it into hgwdev if so runs weekly, complains quarterly braney braney braney
geneReviewsWrapper.sh checks for new GeneReviews data and downloads and loads it into hgwdev if so runs weekly, complains quarterly braney braney braney