Monitoring Tasks: Difference between revisions
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(Updating Proposed New assignments, removing info on final column, but leaving it there to make my life easier next time to update.) |
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<th>PROPOSED NEW</th> | <th>PROPOSED NEW</th> | ||
<th>who April '16 -Feb '17</th> | <th>who April '16 -Feb '17</th> | ||
<th> | <th>previous</th> | ||
<th> | <th>previous</th> | ||
<th> | <th></th> | ||
</tr> | </tr> | ||
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<td>ask Galt/Jim about blat updates</td> | <td>ask Galt/Jim about blat updates</td> | ||
<td>3x per year</td> | <td>3x per year</td> | ||
<td></td> | <td>ChrisV,Cath</td> | ||
<td>Cath, Brian </td> | <td>Cath, Brian </td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Pauline, Steve, Jonathan</td> | <td>Pauline, Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
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<td>Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be.</td> | <td>Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be.</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>ChrisV</td> | ||
<td>Cath, Matt</td> | <td>Cath, Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
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<td>Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report.</td> | <td>Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report.</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>Jairo</td> | ||
<td>Cath</td> | <td>Cath</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 49: | Line 49: | ||
<td>as needed</td> | <td>as needed</td> | ||
<td></td> | <td></td> | ||
<td>many: cath, | <td>many: cath, chmalee, kuhn, brianlee, braney, luvina, gary, ann,, jcasper, matt, jairo, chrisv</td> | ||
<td>many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | <td>many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | ||
<td>many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | <td>many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 58: | Line 58: | ||
<td>receive output from gbLoaded cron job and alert braney if anything seems very outdated</td> | <td>receive output from gbLoaded cron job and alert braney if anything seems very outdated</td> | ||
<td>daily, problems every 3-6 months</td> | <td>daily, problems every 3-6 months</td> | ||
<td></td> | <td>Jairo</td> | ||
<td>Cath, Luvina</td> | <td>Cath, Luvina</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 68: | Line 68: | ||
<td>receive output from showProcesslist.csh</td> | <td>receive output from showProcesslist.csh</td> | ||
<td>daily, no action</td> | <td>daily, no action</td> | ||
<td></td> | <td>Cath, Luvina</td> | ||
<td>Jairo, Matt </td> | <td>Jairo, Matt </td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 78: | Line 78: | ||
<td>get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job)</td> | <td>get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job)</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>Cath</td> | ||
<td>Brian, Jonathan</td> | <td>Brian, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 88: | Line 88: | ||
<td>get an email from backupCentral.csh each month that keeps a dump of hgcentral tables (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834)</td> | <td>get an email from backupCentral.csh each month that keeps a dump of hgcentral tables (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834)</td> | ||
<td>monthly</td> | <td>monthly</td> | ||
<td></td> | <td>Luvina</td> | ||
<td>Matt, Brian </td> | <td>Matt, Brian </td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 98: | Line 98: | ||
<td>receive an email on additions and subtractions to files in /gbdb on hgnfs1</td> | <td>receive an email on additions and subtractions to files in /gbdb on hgnfs1</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Matt</td> | ||
<td> | <td>ChrisL, Luvina </td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 108: | Line 108: | ||
<td>receive an email from cron if qateam DailySandboxUpdate fails</td> | <td>receive an email from cron if qateam DailySandboxUpdate fails</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Luvina</td> | ||
<td>Matt, Brian</td> | <td>Matt, Brian</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 118: | Line 118: | ||
<td>receive output from checkMetaAday.csh; alert; if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day) [[CheckMetaADay.csh_monitoring_task | Instructions & Example]]</td> | <td>receive output from checkMetaAday.csh; alert; if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day) [[CheckMetaADay.csh_monitoring_task | Instructions & Example]]</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>ChrisV</td> | ||
<td>Cath, Matt</td> | <td>Cath, Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 128: | Line 128: | ||
<td>receive output from syncAday.csh; alert; if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) </td> | <td>receive output from syncAday.csh; alert; if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) </td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Cath</td> | ||
<td>ChrisV</td> | <td>ChrisV</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 139: | Line 139: | ||
<td> increment databaseAday, /cluster/bin/scripts/databaseAday.csh </td> | <td> increment databaseAday, /cluster/bin/scripts/databaseAday.csh </td> | ||
<td>problems only</td> | <td>problems only</td> | ||
<td></td> | <td>ChrisL, Matt</td> | ||
<td>Brian, Jonathan</td> | <td>Brian, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 149: | Line 149: | ||
<td>checkHgFindSpec -checkTermRegex, /cluster/bin/scripts/runCheckHgFindSpec go</td> | <td>checkHgFindSpec -checkTermRegex, /cluster/bin/scripts/runCheckHgFindSpec go</td> | ||
<td>problems only</td> | <td>problems only</td> | ||
<td></td> | <td>Luvina</td> | ||
<td>Brian, Jonathan</td> | <td>Brian, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 159: | Line 159: | ||
<td>check to see if there are new files to go with the CGI push /cluster/home/qateam/bin/scripts/findCgiFiles.csh go</td> | <td>check to see if there are new files to go with the CGI push /cluster/home/qateam/bin/scripts/findCgiFiles.csh go</td> | ||
<td>problems only</td> | <td>problems only</td> | ||
<td></td> | <td>Matt, ChrisL</td> | ||
<td>Brian, Jonathan</td> | <td>Brian, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 170: | Line 170: | ||
<td>get output from checkGenomeMysql</td> | <td>get output from checkGenomeMysql</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Luvina</td> | ||
<td> | <td>ChrisL, Matt</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 180: | Line 180: | ||
<td>Check for unigene update for human SAGE track</td> | <td>Check for unigene update for human SAGE track</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Cath, Braney</td> | ||
<td>Luvina, Braney</td> | <td>Luvina, Braney</td> | ||
<td>Steve, Braney</td> | <td>Steve, Braney</td> | ||
| Line 190: | Line 190: | ||
<td>look for broken symlinks in /gbdb:</td> | <td>look for broken symlinks in /gbdb:</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Browser Staff</td> | ||
<td>Browser Staff</td> | <td>Browser Staff</td> | ||
<td>Browser Staff</td> | <td>Browser Staff</td> | ||
| Line 200: | Line 200: | ||
<td>look for broken symlinks in in (very large) visiGene directory</td> | <td>look for broken symlinks in in (very large) visiGene directory</td> | ||
<td>twice yearly</td> | <td>twice yearly</td> | ||
<td></td> | <td>ChrisL</td> | ||
<td>Cath, Galt</td> | <td>Cath, Galt</td> | ||
<td>Steve, Galt</td> | <td>Steve, Galt</td> | ||
| Line 210: | Line 210: | ||
<td>look for broken symlinks in htdocs-hgdownload/goldenpath</td> | <td>look for broken symlinks in htdocs-hgdownload/goldenpath</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Browser Staff</td> | ||
<td>Browser Staff</td> | <td>Browser Staff</td> | ||
<td>Browser Staff</td> | <td>Browser Staff</td> | ||
| Line 220: | Line 220: | ||
<td>Check the source tree for duplicate case-independent filenames. These wreck havoc with git.</td> | <td>Check the source tree for duplicate case-independent filenames. These wreck havoc with git.</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Browser Staff</td> | ||
<td>Browser Staff</td> | <td>Browser Staff</td> | ||
<td>Browser Staff</td> | <td>Browser Staff</td> | ||
| Line 230: | Line 230: | ||
<td>Check to see what kind of browsers and o/s people are using to access the public website</td> | <td>Check to see what kind of browsers and o/s people are using to access the public website</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>Ann, Jairo, ChrisL</td> | ||
<td>Ann, | <td>Ann, ChrisL, Brian</td> | ||
<td>Ann, Steve</td> | <td>Ann, Steve</td> | ||
<td></td> | <td></td> | ||
| Line 240: | Line 240: | ||
<td>run /cluster/bin/scripts/sessionStats.csh</td> | <td>run /cluster/bin/scripts/sessionStats.csh</td> | ||
<td>monthly</td> | <td>monthly</td> | ||
<td></td> | <td>Angie, Brian, Bob</td> | ||
<td>Angie, Brian, Bob</td> | <td>Angie, Brian, Bob</td> | ||
<td>Angie, Brian, Bob, Steve</td> | <td>Angie, Brian, Bob, Steve</td> | ||
| Line 250: | Line 250: | ||
<td>check that the [https://genomicsandhealth.org/work-products-demonstration-projects/beacon-project-0 ga4gh] [http://genome.ucsc.edu/cgi-bin/hgBeacon beacon server] is running. Email Max if there is an issue. </td> | <td>check that the [https://genomicsandhealth.org/work-products-demonstration-projects/beacon-project-0 ga4gh] [http://genome.ucsc.edu/cgi-bin/hgBeacon beacon server] is running. Email Max if there is an issue. </td> | ||
<td>daily</td> | <td>daily</td> | ||
<td></td> | <td>Jairo</td> | ||
<td>Cath</td> | <td>Cath</td> | ||
<td>Ann</td> | <td>Ann</td> | ||
| Line 260: | Line 260: | ||
<td>check that blat servers are running ok</td> | <td>check that blat servers are running ok</td> | ||
<td>ongoing</td> | <td>ongoing</td> | ||
<td></td> | <td>Ann, Brian, Donna, Galt, Luvina, Matt, Erich, ChrisL</td> | ||
<td>Ann, Brian, Donna, Galt, Luvina, Matt, Gary,</td> | <td>Ann, Brian, Donna, Galt, Luvina, Matt, Gary,</td> | ||
<td>Ann, Brian, Donna, Galt, Luvina, Steve, Gary</td> | <td>Ann, Brian, Donna, Galt, Luvina, Steve, Gary</td> | ||
| Line 270: | Line 270: | ||
<td>check that beta builds alright</td> | <td>check that beta builds alright</td> | ||
<td>3x week</td> | <td>3x week</td> | ||
<td></td> | <td>Luvina, Matt</td> | ||
<td>Brian, | <td>Brian, ChrisL,Braney</td> | ||
<td>Steve, Jonathan, Braney</td> | <td>Steve, Jonathan, Braney</td> | ||
<td></td> | <td></td> | ||
| Line 280: | Line 280: | ||
<td>hubPublicCheck complains when the hubPublic table doesn't have the same strings as the actual hub.txt file. '' (NOTE: To run only on Beta hubs requires these declarations: '''export HGDB_CONF=$HOME/.hg.conf.beta''' and '''SHELL=/bin/sh''')''.</td> | <td>hubPublicCheck complains when the hubPublic table doesn't have the same strings as the actual hub.txt file. '' (NOTE: To run only on Beta hubs requires these declarations: '''export HGDB_CONF=$HOME/.hg.conf.beta''' and '''SHELL=/bin/sh''')''.</td> | ||
<td>runs daily, complains rarely</td> | <td>runs daily, complains rarely</td> | ||
<td></td> | <td>ChrisL</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 290: | Line 290: | ||
<td>email request to build [http://genomewiki.ucsc.edu/genecats/index.php/Public_Hub_QA#Push_to_the_RR doPublicCrawl] public.ix and public.ixx hub search files and push them.</td> | <td>email request to build [http://genomewiki.ucsc.edu/genecats/index.php/Public_Hub_QA#Push_to_the_RR doPublicCrawl] public.ix and public.ixx hub search files and push them.</td> | ||
<td>runs quarterly</td> | <td>runs quarterly</td> | ||
<td></td> | <td>Jairo</td> | ||
<td> | <td>ChrisL</td> | ||
<td></td> | <td></td> | ||
<td></td> | <td></td> | ||
| Line 301: | Line 301: | ||
<td>Cronjob reports checkUrlsInTable hg38 wgEncodeCell and cv.ra (likely infrequent results) </td> | <td>Cronjob reports checkUrlsInTable hg38 wgEncodeCell and cv.ra (likely infrequent results) </td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>ChrisV</td> | ||
<td> | <td>ChrisL</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td></td> | |||
</tr> | </tr> | ||
| Line 311: | Line 311: | ||
<td>sends a reminder to check the list of folks who have mirror sites. This list is created by a script of Hiram's and located here: http://genome-test.cse.ucsc.edu/admin/tools/useCount.html. The information comes from the phoneHome program in the CGIs. Sometimes companies set up mirrors, which is not OK.</td> | <td>sends a reminder to check the list of folks who have mirror sites. This list is created by a script of Hiram's and located here: http://genome-test.cse.ucsc.edu/admin/tools/useCount.html. The information comes from the phoneHome program in the CGIs. Sometimes companies set up mirrors, which is not OK.</td> | ||
<td>monthly</td> | <td>monthly</td> | ||
<td></td> | <td>Matt, Luvina</td> | ||
<td>Brian, Luvina</td> | <td>Brian, Luvina</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Pauline</td> | <td>Pauline</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 321: | Line 321: | ||
<td>checkGbibMd5.sh compares the md5sum of gbibBeta.zip on dev with the sum for gbib.zip on genome-store, complaining if they don't match (and it's not during final build)</td> | <td>checkGbibMd5.sh compares the md5sum of gbibBeta.zip on dev with the sum for gbib.zip on genome-store, complaining if they don't match (and it's not during final build)</td> | ||
<td>runs weekly</td> | <td>runs weekly</td> | ||
<td></td> | <td>Jairo, Cath, Jonathan</td> | ||
<td>Brian, Cath, Jonathan</td> | <td>Brian, Cath, Jonathan</td> | ||
<td>Brian, Steve, Jonathan</td> | <td>Brian, Steve, Jonathan</td> | ||
<td> | <td></td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 331: | Line 331: | ||
<td>Curl of http://genomewiki.ucsc.edu/index.php/Assembly_Hubs to test Public Wiki is accessible, output only if no response.</td> | <td>Curl of http://genomewiki.ucsc.edu/index.php/Assembly_Hubs to test Public Wiki is accessible, output only if no response.</td> | ||
<td>hourly</td> | <td>hourly</td> | ||
<td></td> | <td>ChrisV</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td> | <td></td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 346: | Line 346: | ||
<td>receive cron output for tableDescriptions build errors</td> | <td>receive cron output for tableDescriptions build errors</td> | ||
<td>rare</td> | <td>rare</td> | ||
<td></td> | <td>Matt</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
<td>Steve, Luvina</td> | <td>Steve, Luvina</td> | ||
<td>Pauline, Matt</td> | <td>Pauline, Matt</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 360: | Line 360: | ||
<td>run ReleaseLog script (this requires a copy of the kent repository)</td> | <td>run ReleaseLog script (this requires a copy of the kent repository)</td> | ||
<td>daily</td> | <td>daily</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td></td> | |||
</tr> | </tr> | ||
| Line 370: | Line 370: | ||
<td>back up the qapushq</td> | <td>back up the qapushq</td> | ||
<td>every 30 minutes M-F</td> | <td>every 30 minutes M-F</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td>Galt</td> | <td>Galt</td> | ||
<td></td> | |||
</tr> | </tr> | ||
| Line 384: | Line 384: | ||
<td>Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible.</td> | <td>Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible.</td> | ||
<td>weekly</td> | <td>weekly</td> | ||
<td></td> | <td>Cath</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
<td>Luvina</td> | <td>Luvina</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 394: | Line 394: | ||
<td>update sla.html whenever we have RR downtime. [http://genomewiki.ucsc.edu/genecats/index.php/Static_Page_Protocol#Editing_SLA.html See wiki procedures]</td> | <td>update sla.html whenever we have RR downtime. [http://genomewiki.ucsc.edu/genecats/index.php/Static_Page_Protocol#Editing_SLA.html See wiki procedures]</td> | ||
<td>hopefully, not much!</td> | <td>hopefully, not much!</td> | ||
<td></td> | <td>Alexa/Cath</td> | ||
<td>Cath, Luvina</td> | <td>Cath, Luvina</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td>Steve, Jonathan</td> | <td>Steve, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 404: | Line 404: | ||
<td>update crontab in genecats/qa/crontabs/*.crontab (and [http://genomewiki.cse.ucsc.edu/genecats/index.php/Updating_QA_crontabs log in as qateam and restart the qateam crontab] with updates)</td> | <td>update crontab in genecats/qa/crontabs/*.crontab (and [http://genomewiki.cse.ucsc.edu/genecats/index.php/Updating_QA_crontabs log in as qateam and restart the qateam crontab] with updates)</td> | ||
<td>as needed</td> | <td>as needed</td> | ||
<td></td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Jonathan</td> | <td>Jonathan</td> | ||
<td>Pauline, Jonathan</td> | <td>Pauline, Jonathan</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 414: | Line 414: | ||
<td>update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address</td> | <td>update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address</td> | ||
<td>rarely</td> | <td>rarely</td> | ||
<td></td> | <td>ChrisL</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Matt</td> | <td>Matt</td> | ||
<td>Bob</td> | <td>Bob</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 424: | Line 424: | ||
<td>Check genome-preview machine is still running</td> | <td>Check genome-preview machine is still running</td> | ||
<td>biweekly</td> | <td>biweekly</td> | ||
<td> | <td>Jairo</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
<td></td> | |||
</tr> | </tr> | ||
| Line 434: | Line 434: | ||
<td>Updated Facebook with Announcements</td> | <td>Updated Facebook with Announcements</td> | ||
<td>As needed</td> | <td>As needed</td> | ||
<td></td> | <td>Alexa/Team</td> | ||
<td>Brian/Alexa/Team</td> | <td>Brian/Alexa/Team</td> | ||
<td>Brian</td> | <td>Brian</td> | ||
| Line 444: | Line 444: | ||
<td>Update Twitter with Announcements</td> | <td>Update Twitter with Announcements</td> | ||
<td>As needed</td> | <td>As needed</td> | ||
<td></td> | <td>Alexa/Team</td> | ||
<td>Brian/Alexa/Team</td> | <td>Brian/Alexa/Team</td> | ||
<td>Ann</td> | <td>Ann</td> | ||
| Line 461: | Line 461: | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 471: | Line 471: | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 481: | Line 481: | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 491: | Line 491: | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 501: | Line 501: | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 511: | Line 511: | ||
<td>braney</td> | <td>braney</td> | ||
<td>braney</td> | <td>braney</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 523: | Line 523: | ||
<td>nobody</td> | <td>nobody</td> | ||
<td>nobody</td> | <td>nobody</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
| Line 533: | Line 533: | ||
<td>nobody</td> | <td>nobody</td> | ||
<td>nobody</td> | <td>nobody</td> | ||
<td> | <td></td> | ||
</tr> | </tr> | ||
Revision as of 23:10, 10 February 2017
| task | frequency | PROPOSED NEW | who April '16 -Feb '17 | previous | previous | |
|---|---|---|---|---|---|---|
| from hgwdev qateam cron | ||||||
| ask Galt/Jim about blat updates | 3x per year | ChrisV,Cath | Cath, Brian | Steve, Jonathan | Pauline, Steve, Jonathan | |
| Respond to items on the broken links report: Check to make sure that broken links reported are actually broken. If so, fix the link if it is clear what the new link should be and push to the RR. If not, contact the appropriate person at the web site in question to find out what the new link should be. | daily | ChrisV | Cath, Matt | Matt | Matt | |
| Respond to the trackDbGlobal report: Make public and request a push of trackDb and friends for any assemblies that show up as changed in the trackDbGlobal report. | weekly | Jairo | Cath | Matt | Luvina | |
| receive output from hgTracksRandom cron; alert admins to problems | as needed | many: cath, chmalee, kuhn, brianlee, braney, luvina, gary, ann,, jcasper, matt, jairo, chrisv | many: kuhn, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt | many: kuhn, pauline, katrina, brianlee, braney, luvina, gary, ann, steve, jcasper, matt | ||
| receive output from gbLoaded cron job and alert braney if anything seems very outdated | daily, problems every 3-6 months | Jairo | Cath, Luvina | Steve, Jonathan | Steve, Jonathan | |
| receive output from showProcesslist.csh | daily, no action | Cath, Luvina | Jairo, Matt | Steve, Jonathan | Steve, Jonathan | |
| get output from checkTableStatus.csh on Mondays (this is a report on whether the genbank table dumps are up-to-date...if we could get rid of our dependence on those, we could get rid of this cron job) | weekly | Cath | Brian, Jonathan | Steve, Jonathan | Steve, Jonathan | |
| get an email from backupCentral.csh each month that keeps a dump of hgcentral tables (there's a redmine ticket on whether we should change this one: http://redmine.soe.ucsc.edu/issues/7834) | monthly | Luvina | Matt, Brian | Steve, Jonathan | Steve, Jonathan | |
| receive an email on additions and subtractions to files in /gbdb on hgnfs1 | daily | Matt | ChrisL, Luvina | Steve, Jonathan | Steve, Jonathan | |
| receive an email from cron if qateam DailySandboxUpdate fails | daily | Luvina | Matt, Brian | Steve, Jonathan | Steve, Jonathan | |
| receive output from checkMetaAday.csh; alert; if anything is out of sync (compares hgcentralbeta to hgcentral for db of the day) Instructions & Example | daily | ChrisV | Cath, Matt | Matt | Matt | |
| receive output from syncAday.csh; alert; if anything is out of sync (checks that tables are in sync between beta and RR for database of the day) | daily | Cath | ChrisV | Brian | Brian | |
| increment databaseAday, /cluster/bin/scripts/databaseAday.csh | problems only | ChrisL, Matt | Brian, Jonathan | Steve, Jonathan | Steve, Jonathan | |
| checkHgFindSpec -checkTermRegex, /cluster/bin/scripts/runCheckHgFindSpec go | problems only | Luvina | Brian, Jonathan | Steve, Jonathan | Steve, Jonathan | |
| check to see if there are new files to go with the CGI push /cluster/home/qateam/bin/scripts/findCgiFiles.csh go | problems only | Matt, ChrisL | Brian, Jonathan | Steve, Jonathan | Steve, Jonathan | |
| get output from checkGenomeMysql | daily | Luvina | ChrisL, Matt | Steve, Jonathan | Steve, Jonathan | |
| Check for unigene update for human SAGE track | daily | Cath, Braney | Luvina, Braney | Steve, Braney | ||
| look for broken symlinks in /gbdb: | daily | Browser Staff | Browser Staff | Browser Staff | ||
| look for broken symlinks in in (very large) visiGene directory | twice yearly | ChrisL | Cath, Galt | Steve, Galt | ||
| look for broken symlinks in htdocs-hgdownload/goldenpath | daily | Browser Staff | Browser Staff | Browser Staff | ||
| Check the source tree for duplicate case-independent filenames. These wreck havoc with git. | daily | Browser Staff | Browser Staff | Browser Staff | ||
| Check to see what kind of browsers and o/s people are using to access the public website | weekly | Ann, Jairo, ChrisL | Ann, ChrisL, Brian | Ann, Steve | ||
| run /cluster/bin/scripts/sessionStats.csh | monthly | Angie, Brian, Bob | Angie, Brian, Bob | Angie, Brian, Bob, Steve | ||
| check that the ga4gh beacon server is running. Email Max if there is an issue. | daily | Jairo | Cath | Ann | Ann | |
| check that blat servers are running ok | ongoing | Ann, Brian, Donna, Galt, Luvina, Matt, Erich, ChrisL | Ann, Brian, Donna, Galt, Luvina, Matt, Gary, | Ann, Brian, Donna, Galt, Luvina, Steve, Gary | ||
| check that beta builds alright | 3x week | Luvina, Matt | Brian, ChrisL,Braney | Steve, Jonathan, Braney | ||
| hubPublicCheck complains when the hubPublic table doesn't have the same strings as the actual hub.txt file. (NOTE: To run only on Beta hubs requires these declarations: export HGDB_CONF=$HOME/.hg.conf.beta and SHELL=/bin/sh). | runs daily, complains rarely | ChrisL | Matt | Brian | Brian | |
| email request to build doPublicCrawl public.ix and public.ixx hub search files and push them. | runs quarterly | Jairo | ChrisL | |||
| Cronjob reports checkUrlsInTable hg38 wgEncodeCell and cv.ra (likely infrequent results) | weekly | ChrisV | ChrisL | Brian | Brian | |
| sends a reminder to check the list of folks who have mirror sites. This list is created by a script of Hiram's and located here: http://genome-test.cse.ucsc.edu/admin/tools/useCount.html. The information comes from the phoneHome program in the CGIs. Sometimes companies set up mirrors, which is not OK. | monthly | Matt, Luvina | Brian, Luvina | Matt | Pauline | |
| checkGbibMd5.sh compares the md5sum of gbibBeta.zip on dev with the sum for gbib.zip on genome-store, complaining if they don't match (and it's not during final build) | runs weekly | Jairo, Cath, Jonathan | Brian, Cath, Jonathan | Brian, Steve, Jonathan | ||
| Curl of http://genomewiki.ucsc.edu/index.php/Assembly_Hubs to test Public Wiki is accessible, output only if no response. | hourly | ChrisV | Brian | Brian | ||
| from build cron | ||||||
| receive cron output for tableDescriptions build errors | rare | Matt | Luvina | Steve, Luvina | Pauline, Matt | |
| from galt's cron | ||||||
| run ReleaseLog script (this requires a copy of the kent repository) | daily | Galt | Galt | Galt | Galt | |
| back up the qapushq | every 30 minutes M-F | Galt | Galt | Galt | Galt | |
| non-cron jobs | ||||||
| Check old forum (http://redmine.soe.ucsc.edu/forum/index.php) for MLQs that may have slipped through the cracks: Check to make sure that the last response for every ticket came from one of us. If not, look it up in redmine to ensure that A) there is indeed a redmine ticket for it, and B) it has been responded to. If not, notify the appropriate MLM with as much information about the MLQ as possible. | weekly | Cath | Luvina | Luvina | Luvina | |
| update sla.html whenever we have RR downtime. See wiki procedures | hopefully, not much! | Alexa/Cath | Cath, Luvina | Steve, Jonathan | Steve, Jonathan | |
| update crontab in genecats/qa/crontabs/*.crontab (and log in as qateam and restart the qateam crontab with updates) | as needed | Brian | Brian | Jonathan | Pauline, Jonathan | |
| update UCSC Entrez LinkOut when necessary. Entrez LinkOut sends requests for changes (and statistics) to the browser-qa email address | rarely | ChrisL | Matt | Matt | Bob | |
| Check genome-preview machine is still running | biweekly | Jairo | Brian | Brian | Brian | |
| Updated Facebook with Announcements | As needed | Alexa/Team | Brian/Alexa/Team | Brian | Brian | |
| Update Twitter with Announcements | As needed | Alexa/Team | Brian/Alexa/Team | Ann | ||
| otto cron jobs (/hive/data/outside/otto) | ||||||
| omimWrapper.sh checks for new OMIM data and downloads and loads it into hgwdev if so | runs daily, complains bi-weekly | jcasper | jcasper | braney | braney | |
| omimUploadWrapper.sh uploads the OMIM tables to OMIM | runs daily, complains rarely | jcasper | jcasper | braney | braney | |
| decipherWrapper.sh checks for new DECIPHER data and downloads and loads it into hgwdev if so | runs daily, complains monthly | jcasper | jcasper | braney | braney | |
| iscaWrapper.sh checks for new ISCA data and downloads and loads it into hgwdev if so | runs daily, complains monthly | jcasper | jcasper | braney | braney | |
| gwasWrapper.sh checks for new GWAS data and downloads and loads it into hgwdev if so | runs weekly, complains quarterly | jcasper | jcasper | braney | braney | |
| geneReviewsWrapper.sh checks for new GeneReviews data and downloads and loads it into hgwdev if so | runs weekly, complains quarterly | jcasper | jcasper | braney | braney | |
| otto cron jobs (/hive/data/outside/otto) | ||||||
| ~jcasper/bin/scripts/updateHgConf.sh - checks for changes to hg.conf files and checks them in to the kent tree | runs weekly | jcasper | jcasper | nobody | nobody | |
| ~jcasper/bin/backup_hgconfprivate.sh - checks most recent versions of hg.conf.private files into a private repository (~jcasper/hgconf_private/) | runs twice a week | jcasper | jcasper | nobody | nobody | |
