Sample .bashrc

This is a sample .bashrc file that can be copied and used by new employees. Two things are specific to QAers: one of the directories in the PATH environment variable, and setting the HGDB_CONF variable on hgwbeta.

This is meant to be a starting point; you should edit your own settings to customize settings for yourself. Please feel free to edit this version, too! (Note you should have a .tcshrc along with a .bashrc so that you have umask 002 set)

# Source global definitions
if [ -f /etc/bashrc ]; then
	. /etc/bashrc
fi

# get colors on ls in emacs!
alias ls='ls --color=auto'

# various command shortcuts
alias og='ls -ogrt'
alias l='ls -l'
alias lc='ls -C'
alias dir='ls -lrt'
alias h='history'
alias p='pwd -P'  # shows the "real" path in bash, not the path via symlinks
alias et='emacs-tty'
alias genome-mysql='mysql --user=genome --host=genome-mysql.soe.ucsc.edu -A'
alias python=python2.7

# directories I like
alias tdb='cd ~/kent/src/hg/makeDb/trackDb'
alias mdb='cd ~/kent/src/hg/makeDb'
alias doc='cd ~/kent/src/hg/makeDb/doc'
alias schema='cd ~/kent/src/hg/makeDb/schema'
alias tracks='cd ~/tracks'
alias htdocs='cd /usr/local/apache/htdocs'
alias err='cd /usr/local/apache/logs'

# environment
export PS1='[\u@\h \W]$ ' # Set the command prompt to host and working dir
export HOST=`uname -n`
export EDITOR=vim
export MACHTYPE=x86_64
export WEEKLYBLD=/cluster/bin/build/scripts
export JAVA_HOME=/usr/java/default
export _JAVA_OPTIONS=-Xmx2048m
export MYSQLLIBS="/usr/lib64/mysql/libmysqlclient.a -lz"
export MYSQLINC=/usr/include/mysql
export HGCGI=/usr/local/apache/cgi-bin
export CLASSPATH=.:/usr/share/java:/usr/java/default/jre/lib/rt.jar:/usr/java/default/jre/lib:/usr/share/java/httpunit.jar:/cluster/bin/java/jtidy.jar:/usr/share/java/rhino.jar:/cluster/bin/java/mysql-connector-java-3.0.16-ga-bin.jar
export PATH=/cluster/software/bin:/hive/groups/qa/bin/x86_64:/bin:/usr/bin:/cluster/bin/$MACHTYPE:/usr/local/bin:/usr/X11R6/bin:/cluster/bin/scripts:$HOME/bin/$MACHTYPE:$HOME/bin/
# Notes on PATH:
# /cluster/software/bin/ is where the official installation of python2.7 lives.  Everyone on browser-staff should use it.
# /hive/groups/qa/bin/x86_64/ is a special directory for all QAers:  if QA needs to temporarily use an older
# version of a utility (sometimes this is needed for utilities used for make beta/public in trackDb), it can go here.

# environment settings for building my own sandbox
export USE_SSL=1
export USE_BAM=1

# use the correct .hg.conf file, based on host (the HGDB_CONF variable tells programs like hgsql what file to use)
# after hgwdev moves to San Diego, this may become moot
if [ $HOST = "hgwbeta" ]
then
  export HGDB_CONF=~/.hg.conf.beta
fi

# make files and dirs you create writeable by others in the group
umask 002

# for python development: see kent/python/virtual.txt to set up a virtual environment
# source ~/ENV/bin/activate


# The rest are from Brooke's .basrhc; not everyone will need/want them

# Do not do stty when it is not a tty
tty > /dev/null 2> /dev/null
if [ "$?" -eq 0 ]; then
	stty erase ^?
	stty intr ^C
fi

# prevent sighup from killing background jobs
trap "" SIGHUP

# for emacs shell mode:
[ -n "$PS1" -a -n "$TERM" ] && {
    # Under emacs, keep tty sane. also disable more/less.
    [ -n "${EMACS:-}" ] && {
        stty  -icrnl -onlcr -echo susp ^Z
        export PAGER=cat
        export TERM=emacs
    }
}