User contributions for Vanessa
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10 March 2011
- 20:1220:12, 10 March 2011 diff hist +24 Ensembl QA added new category Category:Browser QA
- 20:1120:11, 10 March 2011 diff hist +24 Conservation Track QA added new category Category:Browser QA
- 20:1020:10, 10 March 2011 diff hist +24 Chains and Nets QA added new category Category:Browser QA
- 20:0920:09, 10 March 2011 diff hist +24 All.joiner problem added new category Category:Browser QA
- 20:0620:06, 10 March 2011 diff hist +25 Category:Browser QA tracks No edit summary current
- 20:0520:05, 10 March 2011 diff hist +32 Category:Browser QA No edit summary
- 20:0420:04, 10 March 2011 diff hist −32 Category:Browser QA tracks No edit summary
- 20:0320:03, 10 March 2011 diff hist +32 Category:Browser QA tracks No edit summary
- 00:3400:34, 10 March 2011 diff hist +86 N Category:Browser QA Archived New page: This section started with outdated pages that were moved from the original genomewiki.
- 00:3200:32, 10 March 2011 diff hist +1,844 N V154 Release New page: == Errors on hgwbeta that have not yet been fixed == # Bug in Gene Sorter for dm2 -- Archana. # Error 500 on S.cerevisiae Gene Sorter -- Archana. # hgSession sharing/saving -- Kayla. == ... current
- 00:3000:30, 10 March 2011 diff hist +2,351 N URLs for Details Pages New page: ==Adding URL links to Track Details Pages== One or more URL links can be added to details pages using trackDb settings. In ~/kent/src/hg/hgc/hgc.c, functions are created that print the de... current
- 00:2900:29, 10 March 2011 diff hist +8,035 N New Release Checklist New page: Go to New Assembly Release Process Details page. {| border="1" cellpadding="2" width=800px |-valign="top" |width="10%"|'''Start''' |width="10%"|...
- 00:2800:28, 10 March 2011 diff hist +9 New Assembly Release Process Details changed category
- 00:2400:24, 10 March 2011 diff hist +2,585 N Moving a Branch Tag New page: Obsolete CVS page refer to Patching_a_Branch '''How? ("Who" in parenthesis)''' * ('''Build-Meister'''): Check the CVS log to make sure that you are only picking up only one change (... current
- 00:0500:05, 10 March 2011 diff hist +65 File:Hg19uc002ypa.2.pdf No edit summary current
- 00:0400:04, 10 March 2011 diff hist 0 N File:Hg19uc002ypa.2.pdf No edit summary
9 March 2011
- 23:5923:59, 9 March 2011 diff hist −33 Chains and Nets QA →Update and push downloads.html: removed hard link
- 23:5723:57, 9 March 2011 diff hist −33 Chains and Nets QA →Push to the RR: removed hard link so it will now point to page in this wiki
- 23:4223:42, 9 March 2011 diff hist +80 ENCODE QA →Other things to check by hand: added mean + whiskers info
- 21:3621:36, 9 March 2011 diff hist +37 Chains and Nets QA →Push to the RR: hard linked to genomewiki
- 21:3321:33, 9 March 2011 diff hist +87 N Category:Browser QA tracks New page: This category contains pages that give directions on how to QA a specific type of track
- 21:3221:32, 9 March 2011 diff hist +1,497 N 2008-08-archive was a file on genomewiki (converted it to a page) current
- 21:3121:31, 9 March 2011 diff hist −24 Archived assemblies →Archive dated Aug 25, 2008: converting file to a new page
- 21:2621:26, 9 March 2011 diff hist +52 Training new Browser Staff →Data: hard linked to genome wiki
- 21:2521:25, 9 March 2011 diff hist +116 Training new Browser Staff →Tools: hard linked to genome wiki
- 21:1721:17, 9 March 2011 diff hist +55 Pushing trackDb hard linked to genome wiki
- 21:0621:06, 9 March 2011 diff hist +37 New track checklist →Make Public: hard linked to genomewiki
- 21:0121:01, 9 March 2011 diff hist +45 New track checklist fixed link to point to genomewiki
- 20:2620:26, 9 March 2011 diff hist +55 N Category:FAQs New page: Various FAQs on the GenomeWiki Category:Categories
- 20:2420:24, 9 March 2011 diff hist +60 N Category:Browser Development New page: Browser Features research and development Category:FAQs
- 20:2020:20, 9 March 2011 diff hist +2,952 N SNP Track QA New page: If you have any general questions about snps this is a good resource: http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=helpsnpfaq. In addition to the SNP-specific checks on this page, b...
- 20:1920:19, 9 March 2011 diff hist +26,213 N QAing UCSC Genes New page: == hgGene Page Source Information == Click on the following link to view a sample hgGene page annotated with the sources of the different components: [[Image:hg19uc002ypa.2.pdf|thumb=Imag...
- 20:1820:18, 9 March 2011 diff hist +1,124 N Ensembl QA New page: There are periodic updates to all Ensembl Genes tracks in all dbs. Here is a list of things to do in addition to the regular QA you would do normally for a track: *Run qaEnsGenes.csh **Ru...
- 20:1720:17, 9 March 2011 diff hist +8,047 N Conservation Track QA New page: ==Preparing to QA== The Conservation track will consist of one or more of the following subtracks: multiz#way, phyloP, phastCons and Most Conserved/Conserved Elements. Sometimes if there ...
- 20:1120:11, 9 March 2011 diff hist +8,804 N Chains and Nets QA New page: Category:Browser QA tracks There are two components of chains/nets Chains_Nets: the actual chains/nets themselves and the liftOver directories/files. The liftOver [http://genome.u...
- 20:0820:08, 9 March 2011 diff hist +2,399 N All.joiner problem New page: There is a problem with all.joiner rules and the -database parameter. This is taken from an email from Ann in 2007: Bob and I just ran into something sneaky with running joinerCheck or r...
- 19:3019:30, 9 March 2011 diff hist +15,972 N New track checklist New page: This is the checklist for QA to follow when releasing Genome Browser tracks. General rule: stop testing when you come to the first non-trivial error, and bounce the track to the B queue ...
- 19:2319:23, 9 March 2011 diff hist +72 N Category:Browser QA New page: Genome Browser QA procedures and tools Category:Browser Development
- 19:1519:15, 9 March 2011 diff hist +1,136 N Search robot New page: One of the robots that runs automatically during the CGI Build Process, is the testSearch robot. The code is kent/src/hg/qa/testSearch.c. testSearch - test search functionality. usag...
8 March 2011
- 00:2000:20, 8 March 2011 diff hist +3,384 N Windows testing machine New page: We now have remote access to a Windows machine! We can use this machine from the comfort of our own desks for testing CGIs, bug fixes, new features, etc on the win7 operating system. It ...
- 00:1700:17, 8 March 2011 diff hist +7,702 N VI quick start New page: ==See also:== Graphical [http://www.viemu.com/a_vi_vim_graphical_cheat_sheet_tutorial.html vi/vim Cheat Sheet] ==Insert/Command States== vi is usually either in an 'insert' state, or in...
- 00:1300:13, 8 March 2011 diff hist +2,755 N Updating blat servers New page: There are 3 places where blat servers are located. Assemblies that are important (eg. human or mouse) and are expected to get a lot of hits are hosted here at UCSC and will have a blat hos...
7 March 2011
- 23:5023:50, 7 March 2011 diff hist +9,178 N UCSC Genes Staging Process New page: The UCSC Gene set is created at UCSC for three vertebrate organisms: human, mouse, and rat. It is built once during the initial release of a new assembly, then updated sporadically after ...
- 22:2122:21, 7 March 2011 diff hist +1,408 N Training new Browser Staff New page: (see also: [http://genecats.cse.ucsc.edu/qa/newQaHire.html Getting Started for Browser QA Engineers] and [http://genecats.cse.ucsc.edu/eng/index.html Getting Started for Browser Dev Engin...
- 22:1022:10, 7 March 2011 diff hist +4,003 N Static content for new assemblies New page: Category:Browser QA ==Static Doc changes for New and Updated Assemblies== After editing the docs for your assembly, test them in your sandbox ('''make user''' at the top of the browse...
- 21:5621:56, 7 March 2011 diff hist +3,262 N Static Page Protocol New page: Category:Browser QACategory:Browser Development == Files Destined for the Round Robin and Mirrors (Public Documents) == *The made files are located in /usr/local/apache/htdocs (th...
- 21:5321:53, 7 March 2011 diff hist +4,117 N Static Page JS Protocol New page: Category:Browser QACategory:Browser Development To solve some testing issues, there is a new procedure for hard coded links that go from hgwdev --> hgwbeta --> RR and for those t...
- 21:2221:22, 7 March 2011 diff hist +3,999 N Running joinerCheck for all databases New page: == Overview == The joinerCheck program is run bi-monthly on all active databases on the hgwbeta machine. Errors that are found may be newly introduced or pre-existing. Corrections to data ...
- 21:2021:20, 7 March 2011 diff hist +2,336 N Replacing old tables with new ones New page: When you are updating a track that already exists on the public site with new data or a new assembly, follow the steps below sequentially to make sure that the old data and new data are no...
- 21:1621:16, 7 March 2011 diff hist +29,567 N Outdated instructions for releasing an assembly New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update to an assembly, check to see if chromosome sizes have ch...