User contributions for Rhead
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8 October 2012
- 21:3121:31, 8 October 2012 diff hist −69 Checking RR status through hgTracksRandom removed the "training" categories from this page, since most people don't need to worry about hgTracksRandom
5 October 2012
- 23:3623:36, 5 October 2012 diff hist +54 GenBank QA →Other checks: linked to minimal browser page
- 01:2001:20, 5 October 2012 diff hist −72 New track checklist took out pre-QA labels
12 September 2012
- 18:1718:17, 12 September 2012 diff hist +99 Checking RR status through hgTracksRandom added link to cacti graphs, fixed a typo, added greg to the crontab snippet
29 August 2012
- 23:5123:51, 29 August 2012 diff hist −10 CGI testing responsibilities removed "tests and" from "tests and tracks issues for hgTracks" -- the testing is part of the hgTracks tester's job
- 23:5023:50, 29 August 2012 diff hist +95 CGI testing responsibilities made it more clear that hgTracks needs to be tested every time
- 00:1000:10, 29 August 2012 diff hist +109 Ensembl QA clarified the moving of lines in the trackVersion table based on steve, hiram, and pauline's input
28 August 2012
- 23:5723:57, 28 August 2012 diff hist +241 Outdated instructions for releasing an assembly added note to push hgFixed tables
24 August 2012
- 03:1203:12, 24 August 2012 diff hist 0 Outdated instructions for releasing an assembly →Update hgcentralbeta: moved liftOverChain bit after defaultDb bit
18 August 2012
- 00:4100:41, 18 August 2012 diff hist +89 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added a link to Wellcome's interactive tree of life
17 August 2012
- 23:1423:14, 17 August 2012 diff hist +159 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: more wikipedia links
- 23:0423:04, 17 August 2012 diff hist +108 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added taxonomy browser back. It's not useless. :)
- 22:5722:57, 17 August 2012 diff hist +169 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added links to relevant wikipedia pages
- 19:4719:47, 17 August 2012 diff hist +111 Details pages -- conventions added note that SOE links should use ".soe." instead of ".cse." (per Jorge)
- 00:1800:18, 17 August 2012 diff hist +6 Conservation Track QA took out reference to NCBI taxonomy browser after having trouble with it (e.g., human, chimp, and gorilla all appear to be at same level but shouldn't be)
16 August 2012
- 22:4722:47, 16 August 2012 diff hist +132 GenBank QA →Tracks: added location of genbank counts file
- 19:1119:11, 16 August 2012 diff hist +37 Conservation Track QA moved instruction to check the maf file annotation types agains the display to "things we used to do"
- 02:4002:40, 16 August 2012 diff hist +220 GenBank QA added note to compare current tracks to those on a previous assembly, if available
15 August 2012
- 21:4721:47, 15 August 2012 diff hist −3 Genbank updates changed make command, per braney current
26 July 2012
- 18:3318:33, 26 July 2012 diff hist +80 Static Page Protocol →Files Destined for the Round Robin and Mirrors (Public Documents): added note about gitu
- 03:0203:02, 26 July 2012 diff hist +335 Static Page Protocol →Files Destined for the Round Robin and Mirrors (Public Documents): added note about using FIND=find, noted in redmine #8410
2 July 2012
- 22:3322:33, 2 July 2012 diff hist −155 Genbank updates Removed instructions to delete from /cluster/data/genbank/data/ftp (per Braney). Made the instructions generic for enabling and disabling.
13 June 2012
- 19:3119:31, 13 June 2012 diff hist −20 Outdated instructions for releasing an assembly →Push the database and tables from hgwdev to hgwbeta: removed another instruction to leave out tableDescriptions table when pushing from dev to beta
- 19:2819:28, 13 June 2012 diff hist −18 Outdated instructions for releasing an assembly →Push the database and tables from hgwdev to hgwbeta: took out instruction to remove tableDescriptions
7 June 2012
- 02:3602:36, 7 June 2012 diff hist +147 CGI Testing added Cricket's suggestion for using the CSHL Long RNA Seq track as a stress test track
25 May 2012
- 21:2521:25, 25 May 2012 diff hist +18 Post-Release-Checklist →UniProtKB: changed the bit about running makeUniProtFile.csh in a specific directory. RM#7308.
14 May 2012
- 23:1223:12, 14 May 2012 diff hist +3 Outdated instructions for releasing an assembly →Push image file to hgwbeta and rr: changed to specify push from beta to rr, not dev
10 May 2012
- 21:2621:26, 10 May 2012 diff hist +305 Updating blat servers added note to notify mirrors
23 April 2012
- 20:4320:43, 23 April 2012 diff hist −10 Outdated instructions for releasing an assembly moved pressing the done button in the push queue to the end
- 20:1920:19, 23 April 2012 diff hist 0 Outdated instructions for releasing an assembly moved check for phylogenetic order to staging section
13 March 2012
- 18:0618:06, 13 March 2012 diff hist +361 Post-Release-Checklist →UniProtKB: updated with info from Benoit Bely at UniProt
24 February 2012
- 04:1604:16, 24 February 2012 diff hist +348 QAing UCSC Genes →QAing the many related tables: example loop for getting table row counts
- 04:0604:06, 24 February 2012 diff hist +165 QAing UCSC Genes →QAing the Gene Set: one more note from Jim about checking kgXref
- 04:0204:02, 24 February 2012 diff hist +244 UCSC Genes Staging Process added section for unused tables
- 03:5903:59, 24 February 2012 diff hist +458 QAing UCSC Genes Added FASTA Alignments section
- 03:3503:35, 24 February 2012 diff hist +44 UCSC Genes Staging Process →Download page: push the cds fasta files
- 03:3303:33, 24 February 2012 diff hist −34 UCSC Genes Staging Process →Databases: removed redundant link to ucsc genes tables
- 03:1503:15, 24 February 2012 diff hist +225 QAing UCSC Genes →QAing the Gene Set: Added featureBits note.
- 03:1403:14, 24 February 2012 diff hist −2 m QAing UCSC Genes →QAing the uniProt and proteome databases
- 03:1303:13, 24 February 2012 diff hist +186 QAing UCSC Genes →QAing the uniProt and proteome databases: formatting; adding note about symlinks
- 02:2202:22, 24 February 2012 diff hist +57 UCSC Genes Staging Process →uniProt and Proteome databases: added note to push the READMEs
- 02:2002:20, 24 February 2012 diff hist +7 m UCSC Genes Staging Process →Update the hgcentral database
- 02:1602:16, 24 February 2012 diff hist +225 QAing UCSC Genes →QAing the many related tables: list of tables that should have same counts
- 02:0902:09, 24 February 2012 diff hist −2 UCSC Genes Staging Process →update isPcr: changed header name
- 01:5801:58, 24 February 2012 diff hist +711 UCSC Genes Staging Process split pcr target into hgwbeta and RR sections
- 01:2001:20, 24 February 2012 diff hist +786 QAing UCSC Genes added PCR Target section
- 00:5000:50, 24 February 2012 diff hist −412 UCSC Genes Staging Process Moved intro information from here to the QAing page
- 00:4600:46, 24 February 2012 diff hist −64 QAing UCSC Genes →Tables Related to UCSC Genes That are Separate tracks: noted that exoniphy will no longer be built
- 00:4200:42, 24 February 2012 diff hist −133 QAing UCSC Genes removed links to other ucsc genes pages from bottom of page
- 00:4100:41, 24 February 2012 diff hist +274 QAing UCSC Genes Moved intro information here from the Staging page
