Assembly QA Part 1 DEV Steps: Revision history

29 September 2020

• curprev 17:1817:18, 29 September 2020‎ Gerardo talk contribs‎ 34,546 bytes −1‎ →‎Dev: for :queryDb:vsYourDb: check README: spell fix reciprocalBest
• curprev 17:1617:16, 29 September 2020‎ Gerardo talk contribs‎ 34,547 bytes +14‎ →‎Dev: for :queryDb:vsYourDb: check corruption: spell fix, adding path to axtRBestNet
• curprev 17:1517:15, 29 September 2020‎ Gerardo talk contribs‎ 34,533 bytes +14‎ →‎Dev: for :queryDb:vsYourDb: check md5sum: spell fix, adding path to axtRBestNet
• curprev 17:1317:13, 29 September 2020‎ Gerardo talk contribs‎ 34,519 bytes +14‎ →‎Dev: vsXXX: corruption: spell fix, adding path to axtRBestNet
• curprev 16:5516:55, 29 September 2020‎ Gerardo talk contribs‎ 34,505 bytes +216‎ →‎Dev: md5sum check with 2bitCompare: Added a helpful note for future readers.

28 September 2020

• curprev 21:0321:03, 28 September 2020‎ Daniel talk contribs‎ 34,289 bytes −297‎ →‎Dev: Review blastTabs wiki: Delete non-applicable old QA step

18 September 2020

• curprev 19:1219:12, 18 September 2020‎ Kuhn talk contribs‎ m 34,586 bytes +14‎ spell fix, adding path to axtRBestNet

29 July 2020

• curprev 21:5821:58, 29 July 2020‎ Daniel talk contribs‎ 34,572 bytes −27‎ →‎Dev: Compare chrom sizes
• curprev 21:5421:54, 29 July 2020‎ Daniel talk contribs‎ 34,599 bytes −50‎ →‎Dev: Compare chrom sizes

15 April 2020

• curprev 21:3921:39, 15 April 2020‎ Daniel talk contribs‎ 34,649 bytes +336‎ →‎Dev: Gateway: Check default position: Adding note about hgPbOk

21 May 2019

• curprev 23:3723:37, 21 May 2019‎ Daniel talk contribs‎ 34,313 bytes +6‎ →‎Dev: vsXXX: corruption: Improving command's pasteability
• curprev 23:3023:30, 21 May 2019‎ Daniel talk contribs‎ 34,307 bytes +91‎ →‎Dev: vsXXX: corruption: Adding common commands
• curprev 23:2923:29, 21 May 2019‎ Daniel talk contribs‎ 34,216 bytes +67‎ →‎Dev: vsXXX: check README: Making commands pasteable
• curprev 23:2323:23, 21 May 2019‎ Daniel talk contribs‎ 34,149 bytes −6‎ →‎Dev: vsXXX: check md5sum: Working commands
• curprev 23:1523:15, 21 May 2019‎ Daniel talk contribs‎ 34,155 bytes −6‎ →‎Dev: liftOver: check md5sum: Pasteable
• curprev 23:1523:15, 21 May 2019‎ Daniel talk contribs‎ 34,161 bytes +14‎ →‎Dev: database: check README: Making command paste-able
• curprev 23:1323:13, 21 May 2019‎ Daniel talk contribs‎ 34,147 bytes −7‎ →‎Dev: bigZips: check for corruption: Paste-able
• curprev 23:1023:10, 21 May 2019‎ Daniel talk contribs‎ 34,154 bytes +2‎ →‎Dev: bigZips: check md5sum
• curprev 23:0823:08, 21 May 2019‎ Daniel talk contribs‎ 34,152 bytes −7‎ →‎Dev: bigZips: check md5sum: Copy paste-able
• curprev 23:0323:03, 21 May 2019‎ Daniel talk contribs‎ 34,159 bytes −9‎ →‎Dev: Run dbCheck: Making command copy paste-able
• curprev 23:0223:02, 21 May 2019‎ Daniel talk contribs‎ 34,168 bytes −3‎ →‎Dev: Review downloads dir: changing silly command format
• curprev 22:5222:52, 21 May 2019‎ Daniel talk contribs‎ 34,171 bytes +85‎ →‎Dev: Gateway: Organism image check: Noting where to change reference in html

20 May 2019

• curprev 23:2023:20, 20 May 2019‎ Daniel talk contribs‎ 34,086 bytes +22‎ →‎Dev: Check that BLAT Server is running: Adding missing pre tags
• curprev 23:1923:19, 20 May 2019‎ Daniel talk contribs‎ 34,064 bytes −25‎ Changing assembly name and dev> tag to make the command more copyable.

15 March 2019

• curprev 18:4818:48, 15 March 2019‎ Lrnassar talk contribs‎ 34,089 bytes 0‎ →‎Dev: Verify make doc for all tracks

14 March 2019

• curprev 21:2721:27, 14 March 2019‎ Lrnassar talk contribs‎ 34,089 bytes +1‎ →‎Dev: Verify make doc for all tracks
• curprev 21:2721:27, 14 March 2019‎ Lrnassar talk contribs‎ 34,088 bytes +20‎ →‎Dev: Verify make doc for all tracks

11 January 2019

• curprev 18:5818:58, 11 January 2019‎ Jairo talk contribs‎ 34,068 bytes +9‎ →‎Dev: Gateway: Check trackDb priority
• curprev 18:4618:46, 11 January 2019‎ Jairo talk contribs‎ 34,059 bytes +1,200‎ →‎Dev: Gateway: Check default tracks

3 November 2018

• curprev 00:2800:28, 3 November 2018‎ Daniel talk contribs‎ m 32,859 bytes +1‎ →‎Dev: Review blastTabs wiki
• curprev 00:2700:27, 3 November 2018‎ Daniel talk contribs‎ 32,858 bytes +75‎ →‎Dev: Review blastTabs wiki: Syncing info.
• curprev 00:2200:22, 3 November 2018‎ Daniel talk contribs‎ m 32,783 bytes +31‎ →‎Dev: Permissions check: downloads dir
• curprev 00:1500:15, 3 November 2018‎ Daniel talk contribs‎ 32,752 bytes +341‎ →‎Dev: Permissions check: downloads dir: Making this check easier by grepping out the junk

29 October 2018

• curprev 17:3517:35, 29 October 2018‎ Daniel talk contribs‎ 32,411 bytes +101‎ →‎Dev: bigZips: check README: Minor edit to clarify test options

26 October 2018

• curprev 23:5823:58, 26 October 2018‎ Daniel talk contribs‎ 32,310 bytes +366‎ →‎Dev: bigZips: check README: Automated readme output
• curprev 23:4823:48, 26 October 2018‎ Daniel talk contribs‎ 31,944 bytes +726‎ →‎Dev: Review notes and make temp dir for md5sum checks: Automated several md5sum check steps with one command.

2 October 2018

• curprev 20:0720:07, 2 October 2018‎ Ccpowell talk contribs‎ 31,218 bytes +25‎ →‎Dev: Verify make doc for all tracks

21 September 2018

• curprev 22:4722:47, 21 September 2018‎ Daniel talk contribs‎ 31,193 bytes −40‎ →‎Dev: Run dbCheck: Removed 'broken' sign now that it works

18 September 2018

• curprev 19:0219:02, 18 September 2018‎ Daniel talk contribs‎ 31,233 bytes +58‎ →‎Dev: Gateway: Check the NCBI assembly version link: Grammar and shortcut testing
• curprev 18:5818:58, 18 September 2018‎ Daniel talk contribs‎ 31,175 bytes +78‎ →‎Dev: Gateway: Accession ID check: More clear steps
• curprev 17:3617:36, 18 September 2018‎ Daniel talk contribs‎ 31,097 bytes +7‎ →‎Dev: Run dbCheck: Formatting
• curprev 17:3417:34, 18 September 2018‎ Daniel talk contribs‎ 31,090 bytes +33‎ →‎Dev: Run dbCheck: Updated to mark command as broken
• curprev 00:1900:19, 18 September 2018‎ Daniel talk contribs‎ 31,057 bytes +37‎ →‎Dev: Gateway: Check default position

17 September 2018

• curprev 21:0921:09, 17 September 2018‎ Ccpowell talk contribs‎ 31,020 bytes +37‎ →‎Dev: Do a BLAT search: protein
• curprev 20:4520:45, 17 September 2018‎ Lrnassar talk contribs‎ m 30,983 bytes 0‎ Adding the sort command in order to compare chrom sizes
• curprev 17:0517:05, 17 September 2018‎ Daniel talk contribs‎ 30,983 bytes +6‎ →‎Setup: Create a Google spreadsheet checklist from a template

29 August 2018

• curprev 18:1318:13, 29 August 2018‎ Daniel talk contribs‎ 30,977 bytes −5‎ Updated hgwdev links to .gi, all links validated
• curprev 16:5216:52, 29 August 2018‎ Daniel talk contribs‎ 30,982 bytes +6‎ Undo revision 4724 by Daniel (talk)
• curprev 00:2100:21, 29 August 2018‎ Daniel talk contribs‎ 30,976 bytes −6‎ Link changed from .soe or .cse to .gi

4 January 2018

• curprev 22:0222:02, 4 January 2018‎ Cath talk contribs‎ 30,982 bytes +151‎ Adding checklist item for ensuring that the new assembly is defined in trackDb makefile