Assembly QA Part 4 RR Steps: Revision history

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curprev 22:2222:22, 5 August 2021‎ Lrnassar talk contribs‎ 29,584 bytes −142‎ →‎RR: Turn on GenBank updates add:commit:push

curprev 20:4020:40, 27 April 2021‎ Gerardo talk contribs‎ m 29,726 bytes +104‎ →‎RR: Add or update symlink htdocs:hgdownload currentGenomes: Adding a helpful note

curprev 20:2620:26, 19 November 2020‎ Gerardo talk contribs‎ 29,622 bytes +178‎ →‎RR: Double check tables on mysqlrr, euro, asia from rsync push: Added a helpful alternative command

curprev 23:3523:35, 28 August 2020‎ Daniel talk contribs‎ 29,444 bytes −4‎ →‎RR: Write release log text in Redmine and close
curprev 23:3523:35, 28 August 2020‎ Daniel talk contribs‎ 29,448 bytes −4‎ →‎RR: Write release log text in Redmine and close
curprev 23:3523:35, 28 August 2020‎ Daniel talk contribs‎ 29,452 bytes −7‎ →‎RR: Write release log text in Redmine and close

curprev 23:4423:44, 24 August 2020‎ Daniel talk contribs‎ 29,400 bytes −79‎ →‎RR: Push /gbdb files to the RR

curprev 17:5117:51, 30 July 2019‎ Lrnassar talk contribs‎ m 29,479 bytes −1‎ →‎RR: Add or update symlink htdocs:hgdownload currentGenomes

curprev 00:1700:17, 11 June 2019‎ Jairo talk contribs‎ 29,480 bytes +324‎ →‎RR: Push complete for downloads

curprev 18:0018:00, 7 June 2019‎ Lrnassar talk contribs‎ 29,156 bytes +1‎ →‎RR: make your new assembly the default

curprev 00:0600:06, 6 June 2019‎ Daniel talk contribs‎ 29,155 bytes +7‎ →‎RR: Edit credits:html and add:commit:push: Fixing path

curprev 16:3516:35, 5 June 2019‎ Daniel talk contribs‎ 29,148 bytes +206‎ →‎RR: Check that autodump is working: Adding copy paste link

curprev 23:5323:53, 4 June 2019‎ Daniel talk contribs‎ 28,942 bytes −2‎ hgwbeta
curprev 23:1223:12, 4 June 2019‎ Daniel talk contribs‎ 28,944 bytes −2‎ →‎RR: copyHgcentral: liftOverChain: manual move: Changing mysqlbeta to hgwbeta
curprev 19:0119:01, 4 June 2019‎ Daniel talk contribs‎ 28,946 bytes +46‎ →‎RR: Request push: hgdownload files: Adding caution statement.

curprev 16:5516:55, 3 June 2019‎ Daniel talk contribs‎ 28,900 bytes +33‎ →‎RR: Check that tables do not need to be pushed again: Adding what Table differences are okay.

curprev 00:0300:03, 1 June 2019‎ Daniel talk contribs‎ 28,867 bytes +334‎ →‎RR: Check that tables do not need to be pushed again: Correcting tables not to push list

curprev 15:5815:58, 10 May 2019‎ Ccpowell talk contribs‎ m 28,533 bytes +89‎ Adding one line mysql query
curprev 15:5415:54, 10 May 2019‎ Ccpowell talk contribs‎ 28,444 bytes +86‎ Noting that this step should be completed after copying hgcentralbeta to hgcentral

curprev 17:1417:14, 26 November 2018‎ Daniel talk contribs‎ 28,358 bytes +23‎ →‎RR: Post Google Groups announcement: Changing name

curprev 18:3818:38, 16 November 2018‎ Daniel talk contribs‎ 27,589 bytes +7‎ →‎RR: Turn on GenBank updates add:commit:push: Making IGNORE STEP message larger

curprev 22:0422:04, 14 November 2018‎ Daniel talk contribs‎ 27,582 bytes +87‎ →‎RR: make your new assembly the default: Reducing two line command to one line, adding check work code.
curprev 21:5921:59, 14 November 2018‎ Daniel talk contribs‎ 27,495 bytes +1‎ →‎RR: hgCentral:dbDb set active equal to 1: Format edits
curprev 21:5821:58, 14 November 2018‎ Daniel talk contribs‎ 27,494 bytes +236‎ →‎RR: hgCentral:dbDb set active equal to 1: Adding code to do it in command line and check changes.

curprev 00:2300:23, 10 November 2018‎ Daniel talk contribs‎ 27,258 bytes +183‎ →‎RR: Add or update symlink htdocs:hgdownload currentGenomes: Adding warning to avoid unlink error

curprev 18:0018:00, 1 November 2018‎ Ccpowell talk contribs‎ 27,075 bytes +76‎ →‎RR: Request push: chain nets for other assemblies

curprev 20:0420:04, 26 October 2018‎ Jairo talk contribs‎ 26,999 bytes +259‎ No edit summary

curprev 20:3220:32, 5 October 2018‎ Jairo talk contribs‎ 26,740 bytes +420‎ →‎RR: Check chain nets tracks for other assemblies

curprev 18:5218:52, 4 October 2018‎ Jairo talk contribs‎ 26,320 bytes −3‎ →‎RR: check symlink on ftp site
curprev 18:5218:52, 4 October 2018‎ Jairo talk contribs‎ 26,323 bytes +61‎ →‎RR: check symlink on ftp site
curprev 17:1817:18, 4 October 2018‎ Lrnassar talk contribs‎ 26,262 bytes +327‎ →‎RR: make your new assembly the default

curprev 19:0419:04, 3 October 2018‎ Daniel talk contribs‎ 25,935 bytes −18‎ →‎RR: Check Tools: BLAT: protein: Replacing incorrect instructions
curprev 19:0319:03, 3 October 2018‎ Daniel talk contribs‎ 25,953 bytes −18‎ →‎RR: Check Tools: BLAT: dna: Replacing incorrect instructions.
curprev 19:0219:02, 3 October 2018‎ Daniel talk contribs‎ 25,971 bytes −40‎ →‎RR: Check Tools: LiftOver: Replacing incorrect instructions.

curprev 22:2622:26, 1 October 2018‎ Lrnassar talk contribs‎ m 25,614 bytes −11‎ →‎RR: GenBank updates: make libs and run make
curprev 22:0322:03, 1 October 2018‎ Ccpowell talk contribs‎ 25,625 bytes +135‎ →‎RR: Turn on GenBank updates add:commit:push
curprev 21:2221:22, 1 October 2018‎ Ccpowell talk contribs‎ 25,490 bytes +22‎ →‎RR: Check Tools: LiftOver
curprev 17:4517:45, 1 October 2018‎ Ccpowell talk contribs‎ 25,468 bytes +13‎ →‎RR: copyHgcentral: liftOverChain: manual move

curprev 16:2616:26, 13 September 2018‎ Brianlee talk contribs‎ 25,455 bytes +3‎ →‎RR: Double check tables on mysqlrr, euro, asia from rsync push: updating reference to hgwdev.sdsc.edu to hgwdev.gi.ucsc.edu

curprev 16:5316:53, 29 August 2018‎ Daniel talk contribs‎ 25,452 bytes +16‎ Undo revision 4727 by Daniel (talk)
curprev 00:2500:25, 29 August 2018‎ Daniel talk contribs‎ 25,436 bytes −16‎ Link changed from .soe or .cse to .gi

curprev 23:1923:19, 3 May 2018‎ Ann talk contribs‎ m 25,452 bytes +244‎ →‎RR: Request push for static docs

curprev 17:4117:41, 11 January 2018‎ Cath talk contribs‎ m 25,208 bytes +109‎ →‎RR: make your new assembly the default
curprev 17:3217:32, 11 January 2018‎ Cath talk contribs‎ m 25,099 bytes +258‎ →‎RR: make your new assembly the default

curprev 18:3918:39, 15 November 2017‎ Cath talk contribs‎ m 24,841 bytes +39‎ →‎RR: Double check tables on mysqlrr, euro, asia from rsync push

curprev 17:1417:14, 14 November 2017‎ Cath talk contribs‎ m 24,802 bytes +21‎ No edit summary

curprev 22:0322:03, 13 November 2017‎ Cath talk contribs‎ m 24,781 bytes +76‎ →‎RR: Write release log text in Redmine and close
curprev 22:0222:02, 13 November 2017‎ Cath talk contribs‎ m 24,705 bytes +140‎ →‎RR: Write release log text in Redmine and close

curprev 00:5300:53, 10 November 2017‎ Cath talk contribs‎ m 24,565 bytes +115‎ →‎RR: Check public genome-mysql
curprev 00:5000:50, 10 November 2017‎ Cath talk contribs‎ m 24,450 bytes +16‎ →‎RR: Double check tables on mysqlrr, euro, asia from rsync push
curprev 00:4900:49, 10 November 2017‎ Cath talk contribs‎ m 24,434 bytes −29‎ →‎RR: Double check tables on mysqlrr, euro, asia from rsync push
curprev 00:0000:00, 10 November 2017‎ Cath talk contribs‎ m 24,463 bytes +12‎ →‎RR: Double check tables on mysqlrr from rsync push

curprev 23:5623:56, 9 November 2017‎ Cath talk contribs‎ m 24,451 bytes +413‎ →‎RR: copyHgcentral test db defaultDb beta rr
curprev 23:2423:24, 9 November 2017‎ Cath talk contribs‎ m 24,038 bytes +109‎ →‎RR: Push complete for currentGenomes symlink
curprev 23:2023:20, 9 November 2017‎ Cath talk contribs‎ m 23,929 bytes +13‎ →‎RR: copyHgcentral: liftOverChain: manual move
curprev 23:1723:17, 9 November 2017‎ Cath talk contribs‎ m 23,916 bytes +426‎ →‎RR: copyHgcentral: liftOverChain: manual move

curprev 23:2923:29, 8 November 2017‎ Cath talk contribs‎ m 23,490 bytes +39‎ →‎RR: GenBank updates: check Genbank update times
curprev 23:2823:28, 8 November 2017‎ Cath talk contribs‎ m 23,451 bytes +107‎ →‎RR: Turn on GenBank updates add:commit:push

curprev 00:5800:58, 7 November 2017‎ Cath talk contribs‎ m 23,344 bytes +163‎ →‎RR: Turn on GenBank updates add:commit:push

curprev 23:4523:45, 20 October 2017‎ Cath talk contribs‎ m 20,277 bytes +607‎ →‎RR: Check blat

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