Conservation Track QA: Revision history

9 January 2019

• curprev 00:4200:42, 9 January 2019‎ Daniel talk contribs‎ 16,575 bytes +84‎ →‎Examine and possibly push records for the extFile and seq tables: Making commands consistent and copyable, using $db instead of hg38

29 August 2018

• curprev 16:5516:55, 29 August 2018‎ Daniel talk contribs‎ 16,491 bytes +5‎ Undo revision 4739 by Daniel (talk)
• curprev 00:3600:36, 29 August 2018‎ Daniel talk contribs‎ 16,486 bytes −5‎ Links changed from .soe or .cse to .gi

10 January 2018

• curprev 20:0720:07, 10 January 2018‎ Cath talk contribs‎ m 16,491 bytes −9‎ →‎Example push requests
• curprev 20:0620:06, 10 January 2018‎ Cath talk contribs‎ 16,500 bytes +609‎ No edit summary
• curprev 16:5816:58, 10 January 2018‎ Cath talk contribs‎ m 15,891 bytes +425‎ No edit summary

5 January 2018

• curprev 23:0623:06, 5 January 2018‎ Cath talk contribs‎ m 15,466 bytes +87‎ →‎Find out how phastCons was run
• curprev 23:0323:03, 5 January 2018‎ Cath talk contribs‎ m 15,379 bytes +133‎ →‎Check trackDb.ra file
• curprev 22:3922:39, 5 January 2018‎ Cath talk contribs‎ m 15,246 bytes −79‎ →‎Check trackDb.ra file

15 December 2017

• curprev 01:0701:07, 15 December 2017‎ Cath talk contribs‎ 15,325 bytes +88‎ →‎Check multizway#wayFrames table

12 December 2017

• curprev 22:2722:27, 12 December 2017‎ Cath talk contribs‎ m 15,237 bytes +201‎ →‎Examine and possibly push records for the extFile and seq tables
• curprev 22:1422:14, 12 December 2017‎ Cath talk contribs‎ m 15,036 bytes 0‎ →‎Examine and possible push records for the extFile and seq tables
• curprev 22:1422:14, 12 December 2017‎ Cath talk contribs‎ m 15,036 bytes +1,285‎ →‎Examine and possible push records for the extFile and seq tables
• curprev 22:1222:12, 12 December 2017‎ Cath talk contribs‎ m 13,751 bytes +205‎ →‎Figure out extFile and seq tables
• curprev 22:0922:09, 12 December 2017‎ Cath talk contribs‎ 13,546 bytes +768‎ →‎Figure out extFile and seq tables: Adding example for extFile script dev> beta push

4 December 2017

• curprev 21:2321:23, 4 December 2017‎ Cath talk contribs‎ m 12,778 bytes +594‎ No edit summary

30 January 2017

• curprev 21:2621:26, 30 January 2017‎ Chmalee talk contribs‎ m 12,184 bytes +153‎ →‎Check one maf file: Adding command to search gzipped files for multiple species

26 October 2016

• curprev 14:5714:57, 26 October 2016‎ Chmalee talk contribs‎ m 12,031 bytes 0‎ →‎Pushing to the RR: minor grammar

28 August 2015

• curprev 20:3020:30, 28 August 2015‎ Jonathan talk contribs‎ 12,031 bytes +2‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order
• curprev 20:2920:29, 28 August 2015‎ Jonathan talk contribs‎ 12,029 bytes +814‎ No edit summary

24 August 2015

• curprev 21:4821:48, 24 August 2015‎ Jonathan talk contribs‎ 11,215 bytes +154‎ →‎Things we used to do to QA the conservation track but no longer do
• curprev 21:4721:47, 24 August 2015‎ Jonathan talk contribs‎ 11,061 bytes −79‎ →‎Read through both description pages

26 April 2014

• curprev 00:3700:37, 26 April 2014‎ Pauline talk contribs‎ 11,140 bytes +659‎ Adding new trick for reducing time between gbdb file push and matching extFile table push.

18 August 2012

• curprev 00:4100:41, 18 August 2012‎ Rhead talk contribs‎ 10,481 bytes +89‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added a link to Wellcome's interactive tree of life

17 August 2012

• curprev 23:1423:14, 17 August 2012‎ Rhead talk contribs‎ 10,392 bytes +159‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: more wikipedia links
• curprev 23:0423:04, 17 August 2012‎ Rhead talk contribs‎ 10,233 bytes +108‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added taxonomy browser back. It's not useless. :)
• curprev 22:5722:57, 17 August 2012‎ Rhead talk contribs‎ 10,125 bytes +169‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added links to relevant wikipedia pages
• curprev 00:1800:18, 17 August 2012‎ Rhead talk contribs‎ 9,956 bytes +6‎ took out reference to NCBI taxonomy browser after having trouble with it (e.g., human, chimp, and gorilla all appear to be at same level but shouldn't be)

16 August 2012

• curprev 19:1119:11, 16 August 2012‎ Rhead talk contribs‎ 9,950 bytes +37‎ moved instruction to check the maf file annotation types agains the display to "things we used to do"

10 August 2012

• curprev 17:4917:49, 10 August 2012‎ Pauline talk contribs‎ m 9,913 bytes −16‎ →‎Find out how phastCons was run (from make doc)
• curprev 17:4917:49, 10 August 2012‎ Pauline talk contribs‎ 9,929 bytes +657‎ clarifying mysterious non-inf instructions

17 January 2012

• curprev 21:3721:37, 17 January 2012‎ Steve talk contribs‎ 9,272 bytes −233‎ Per Ann Z, removed section specifying to contact Galaxy

9 December 2011

• curprev 19:3619:36, 9 December 2011‎ Steve talk contribs‎ 9,505 bytes +267‎ Added a section for modifying downloads.html
• curprev 19:0619:06, 9 December 2011‎ Steve talk contribs‎ 9,238 bytes +241‎ Added a note about pushing extFile from dev to beta if extFile doesn't exist on beta and there is only one entry in extFile on dev

8 December 2011

• curprev 20:0220:02, 8 December 2011‎ Steve talk contribs‎ 8,997 bytes +7‎ Added a mailto: tag to Anton Nekrutenko's email address
• curprev 19:4919:49, 8 December 2011‎ Steve talk contribs‎ 8,990 bytes +30‎ No edit summary
• curprev 19:3719:37, 8 December 2011‎ Steve talk contribs‎ 8,960 bytes +134‎ Added a note about setting Multiz Alignments to "pack" to visualize colors

3 October 2011

• curprev 05:5405:54, 3 October 2011‎ Pauline talk contribs‎ 8,826 bytes +95‎ Adding table browser route to hgPal.

2 September 2011

• curprev 19:0519:05, 2 September 2011‎ Greg talk contribs‎ 8,731 bytes +203‎ →‎Read through both description pages: added info on how to change phylo order in track controls

18 August 2011

• curprev 21:3721:37, 18 August 2011‎ Luvina talk contribs‎ 8,528 bytes +116‎ →‎Preparing to QA
• curprev 21:2721:27, 18 August 2011‎ Luvina talk contribs‎ 8,412 bytes +79‎ →‎Figure out extFile and seq tables

28 June 2011

• curprev 21:3021:30, 28 June 2011‎ Greg talk contribs‎ 8,333 bytes +6‎ →‎Figure out extFile and seq tables
• curprev 21:0421:04, 28 June 2011‎ Greg talk contribs‎ m 8,327 bytes +67‎ →‎To see the list of assemblies actually used to build the tracks: added note about .list
• curprev 20:2220:22, 28 June 2011‎ Greg talk contribs‎ m 8,260 bytes +37‎ →‎To see the list of assemblies actually used to build the tracks: Added question (temp)

21 June 2011

• curprev 23:5823:58, 21 June 2011‎ Pauline talk contribs‎ m 8,223 bytes +94‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order
• curprev 18:3918:39, 21 June 2011‎ Greg talk contribs‎ 8,129 bytes +15‎ →‎find out how phastCons was run (from make doc)
• curprev 18:3618:36, 21 June 2011‎ Greg talk contribs‎ m 8,114 bytes +36‎ →‎Figure out extFile and seq tables
• curprev 18:3318:33, 21 June 2011‎ Greg talk contribs‎ m 8,078 bytes +7‎ →‎Figure out extFile and seq tables: switched can to must in bold.

10 March 2011

• curprev 20:1120:11, 10 March 2011‎ Vanessa talk contribs‎ 8,071 bytes +24‎ added new category Category:Browser QA

9 March 2011

• curprev 20:1720:17, 9 March 2011‎ Vanessa talk contribs‎ 8,047 bytes +8,047‎ New page: ==Preparing to QA== The Conservation track will consist of one or more of the following subtracks: multiz#way, phyloP, phastCons and Most Conserved/Conserved Elements. Sometimes if there ...