KnownGene: Difference between revisions
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== | == Initialize work directory == | ||
Create and cd into work directory of the form /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build | *Create and cd into work directory of the form /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build | ||
Start a screen. | *Start a screen. | ||
*Copy buildEnv.sh from previous build on this db | |||
== Setting environment variables == | == Setting environment variables == | ||
Revision as of 17:26, 26 July 2021
Initialize work directory
- Create and cd into work directory of the form /hive/data/genomes/$db/bed/gencode$GENCODE_VERSION/build
- Start a screen.
- Copy buildEnv.sh from previous build on this db
Setting environment variables
The environment variables used in the build are set in the script buildEnv.sh. All the other scripts assume that this script has been sourced in the current shell.
