Outdated instructions for releasing an assembly: Revision history

4 June 2019

• curprev 23:5723:57, 4 June 2019‎ Daniel talk contribs‎ 40,744 bytes −28‎ hgwbeta

1 September 2018

• curprev 06:3906:39, 1 September 2018‎ Galt talk contribs‎ 40,772 bytes 0‎ changed cse to soe

23 March 2018

• curprev 16:3616:36, 23 March 2018‎ Brianlee talk contribs‎ 40,772 bytes +74‎ No edit summary
• curprev 16:3516:35, 23 March 2018‎ Brianlee talk contribs‎ 40,698 bytes +45‎ Adding some h1 level boldness to help emphasize this historical page isn't the current page to look at.

11 January 2018

• curprev 17:4417:44, 11 January 2018‎ Cath talk contribs‎ m 40,653 bytes +29‎ No edit summary
• curprev 17:4417:44, 11 January 2018‎ Cath talk contribs‎ m 40,624 bytes +31‎ No edit summary
• curprev 17:2217:22, 11 January 2018‎ Cath talk contribs‎ m 40,593 bytes 0‎ Cath moved page Releasing an assembly to Outdated instructions for releasing an assembly: renaming page to indicate that these instructions are old and outdated
• curprev 17:1817:18, 11 January 2018‎ Cath talk contribs‎ m 40,593 bytes +33‎ No edit summary
• curprev 17:1717:17, 11 January 2018‎ Cath talk contribs‎ m 40,560 bytes +2‎ No edit summary
• curprev 17:1717:17, 11 January 2018‎ Cath talk contribs‎ m 40,558 bytes +43‎ No edit summary
• curprev 17:1617:16, 11 January 2018‎ Cath talk contribs‎ m 40,515 bytes +5‎ No edit summary
• curprev 17:1617:16, 11 January 2018‎ Cath talk contribs‎ m 40,510 bytes +2‎ No edit summary
• curprev 17:1517:15, 11 January 2018‎ Cath talk contribs‎ m 40,508 bytes +39‎ No edit summary
• curprev 17:1417:14, 11 January 2018‎ Cath talk contribs‎ m 40,469 bytes +176‎ Adding a note to point to the new wiki since this one is outdated.
• curprev 00:2700:27, 11 January 2018‎ Brianlee talk contribs‎ 40,293 bytes +111‎ →‎Update defaultDb in hgcentral
• curprev 00:2500:25, 11 January 2018‎ Brianlee talk contribs‎ 40,182 bytes +241‎ →‎defaultDb: Adding note about better data on previous release being a reason not to update an assembly.

5 December 2017

• curprev 17:0017:00, 5 December 2017‎ Chmalee talk contribs‎ m 39,941 bytes +133‎ →‎Make sure no tables need to be repushed from hgwdev to hgwbeta: Adding awk for extracting tables needing to be repushed

15 November 2017

• curprev 20:0920:09, 15 November 2017‎ Chmalee talk contribs‎ m 39,808 bytes −89‎ →‎Review all tracks in the sub-pushQ: Removing gbSanity check after Braney said not to do it anymore.

2 November 2017

• curprev 17:1817:18, 2 November 2017‎ Chmalee talk contribs‎ m 39,897 bytes +5‎ →‎Turn on GenBank updates
• curprev 17:1617:16, 2 November 2017‎ Chmalee talk contribs‎ m 39,892 bytes +3‎ →‎Turn on genbank updates on the RR
• curprev 17:1517:15, 2 November 2017‎ Chmalee talk contribs‎ m 39,889 bytes +74‎ →‎Check that Genbank is running on the RR: Genbank updates run once a week now on the rr

1 November 2017

• curprev 20:5820:58, 1 November 2017‎ Chmalee talk contribs‎ m 39,815 bytes −281‎ →‎Turn on genbank updates on the RR: Braney says we don't need to tell him to reinstall binaries anymore.

19 July 2017

• curprev 15:3815:38, 19 July 2017‎ Cath talk contribs‎ 40,096 bytes +31‎ →‎Note: There is a newer version of these assembly QA & Release steps

23 May 2017

• curprev 23:2223:22, 23 May 2017‎ Cath talk contribs‎ m 40,065 bytes −5‎ No edit summary
• curprev 23:2123:21, 23 May 2017‎ Cath talk contribs‎ m 40,070 bytes −1‎ No edit summary
• curprev 23:2023:20, 23 May 2017‎ Cath talk contribs‎ m 40,071 bytes +3‎ No edit summary
• curprev 23:1723:17, 23 May 2017‎ Cath talk contribs‎ m 40,068 bytes +272‎ Adding link to new assembly release wiki

10 April 2017

• curprev 20:4520:45, 10 April 2017‎ Cath talk contribs‎ m 39,796 bytes +99‎ →‎Verify that everything is working on genome-euro

14 October 2016

• curprev 20:3720:37, 14 October 2016‎ Chmalee talk contribs‎ m 39,697 bytes +164‎ →‎Stage assembly on Round Robin

23 September 2016

• curprev 17:0517:05, 23 September 2016‎ Chmalee talk contribs‎ 39,533 bytes +347‎ →‎Read and verify READMEs

22 September 2016

• curprev 19:5919:59, 22 September 2016‎ Chmalee talk contribs‎ 39,186 bytes +285‎ →‎joinerCheck

21 March 2016

• curprev 21:5821:58, 21 March 2016‎ Cath talk contribs‎ 38,901 bytes −365‎ →‎blatServers

1 March 2016

• curprev 16:4516:45, 1 March 2016‎ Mspeir talk contribs‎ 39,266 bytes +11‎ →‎Make sure no tables need to be repushed from hgwdev to hgwbeta

10 February 2016

• curprev 21:3321:33, 10 February 2016‎ Cath talk contribs‎ 39,255 bytes −9‎ →‎Ask push-request to make this assembly available on genome-mysql
• curprev 21:2821:28, 10 February 2016‎ Cath talk contribs‎ 39,264 bytes +412‎ →‎Ask push-request to make this assembly available on genome-mysql
• curprev 21:2221:22, 10 February 2016‎ Cath talk contribs‎ 38,852 bytes +552‎ →‎Request dump and autodump of database

29 June 2015

• curprev 18:4418:44, 29 June 2015‎ Jonathan talk contribs‎ 38,300 bytes +396‎ →‎Turn on genbank updates on the RR

28 April 2015

• curprev 23:2723:27, 28 April 2015‎ Brianlee talk contribs‎ 37,904 bytes +22‎ →‎Request rsync of entire database from push-request
• curprev 23:2623:26, 28 April 2015‎ Brianlee talk contribs‎ 37,882 bytes +22‎ →‎Request rsync of entire database from push-request

1 April 2015

• curprev 19:5119:51, 1 April 2015‎ Mspeir talk contribs‎ 37,860 bytes +496‎ →‎Push the database and tables from hgwdev to hgwbeta

3 January 2015

• curprev 00:0700:07, 3 January 2015‎ Mspeir talk contribs‎ 37,364 bytes +711‎ →‎Review the phylogenetic location in pull-down menus on hgGateway

28 July 2014

• curprev 23:1223:12, 28 July 2014‎ Mspeir talk contribs‎ 36,653 bytes −7‎ →‎Check link to NCBIs Assembly database on hgGateway page

24 January 2014

• curprev 18:0618:06, 24 January 2014‎ Kuhn talk contribs‎ 36,660 bytes +145‎ →‎Check the .2bit files

10 January 2014

• curprev 23:1423:14, 10 January 2014‎ Steve talk contribs‎ 36,515 bytes −644‎ Editing the "Update hgcentral" section to include copyHgcentral info
• curprev 22:5322:53, 10 January 2014‎ Steve talk contribs‎ 37,159 bytes +477‎ Revising the "Update hgcentralbeta section" with information about the new copyHgcentral script

8 November 2013

• curprev 23:1923:19, 8 November 2013‎ Brianlee talk contribs‎ 36,682 bytes +241‎ →‎Update hgcentral

25 September 2013

• curprev 21:4621:46, 25 September 2013‎ Brianlee talk contribs‎ 36,441 bytes +1‎ →‎Turn on genbank updates on the RR
• curprev 17:2717:27, 25 September 2013‎ Brianlee talk contribs‎ 36,440 bytes +8‎ →‎Verify makedoc for all the tracks listed in the pushQ

24 September 2013

• curprev 19:1819:18, 24 September 2013‎ Brianlee talk contribs‎ 36,432 bytes 0‎ →‎Turn on GenBank updates

18 September 2013

• curprev 19:1619:16, 18 September 2013‎ Steve talk contribs‎ 36,432 bytes +569‎ Updated .2bit section to reflect the addition of the 2bitCompare script

1 August 2013

• curprev 23:3623:36, 1 August 2013‎ Brianlee talk contribs‎ 35,863 bytes +19‎ →‎Verify makedoc for all the tracks listed in the pushQ
• curprev 23:3523:35, 1 August 2013‎ Brianlee talk contribs‎ 35,844 bytes −1‎ →‎Check that all tables in this database are mentioned in all.joiner
• curprev 23:3423:34, 1 August 2013‎ Brianlee talk contribs‎ 35,845 bytes −1‎ →‎Check that table update times are copacetic
• curprev 23:3323:33, 1 August 2013‎ Brianlee talk contribs‎ 35,846 bytes −2‎ →‎Check that common keys between tables are in sync
• curprev 23:2823:28, 1 August 2013‎ Brianlee talk contribs‎ 35,848 bytes +70‎ →‎Check that it is not symlink on hgnfs1, that there is only one file, and is not in a subdirectory
• curprev 23:2223:22, 1 August 2013‎ Brianlee talk contribs‎ 35,778 bytes +10‎ →‎Review the phylogenetic location in pull-down menus on hgGateway
• curprev 23:2023:20, 1 August 2013‎ Brianlee talk contribs‎ 35,768 bytes −11‎ →‎Turn on GenBank updates
• curprev 23:1623:16, 1 August 2013‎ Brianlee talk contribs‎ 35,779 bytes −2‎ →‎Make trackDb on hgwbeta
• curprev 22:4622:46, 1 August 2013‎ Brianlee talk contribs‎ 35,781 bytes −2‎ →‎blatServers
• curprev 22:4422:44, 1 August 2013‎ Brianlee talk contribs‎ 35,783 bytes +11‎ →‎dbDb
• curprev 22:3922:39, 1 August 2013‎ Brianlee talk contribs‎ 35,772 bytes +10‎ →‎Push the database and tables from hgwdev to hgwbeta
• curprev 22:3522:35, 1 August 2013‎ Brianlee talk contribs‎ 35,762 bytes +13‎ →‎Push the database and tables from hgwdev to hgwbeta

30 July 2013

• curprev 19:1419:14, 30 July 2013‎ Brianlee talk contribs‎ 35,749 bytes +3‎ →‎Push /gbdb/$db and html/description.html
• curprev 18:4518:45, 30 July 2013‎ Brianlee talk contribs‎ 35,746 bytes +350‎ →‎Push the database and tables from hgwdev to hgwbeta

18 July 2013

• curprev 23:4423:44, 18 July 2013‎ Brianlee talk contribs‎ 35,396 bytes +274‎ →‎Push chain/net tables in other organisms

17 June 2013

• curprev 18:2818:28, 17 June 2013‎ Brianlee talk contribs‎ 35,122 bytes +96‎ →‎Turn on GenBank updates
• curprev 18:2518:25, 17 June 2013‎ Brianlee talk contribs‎ 35,026 bytes +160‎ →‎Turn on genbank updates on the RR

13 June 2013

• curprev 20:0320:03, 13 June 2013‎ Brianlee talk contribs‎ 34,866 bytes +264‎ →‎Update hgcentral.sql for mirrors

10 June 2013

• curprev 23:3323:33, 10 June 2013‎ Brianlee talk contribs‎ 34,602 bytes +77‎ →‎Update hgcentral
• curprev 23:1423:14, 10 June 2013‎ Brianlee talk contribs‎ 34,525 bytes −11‎ →‎Update hgcentral
• curprev 23:1023:10, 10 June 2013‎ Brianlee talk contribs‎ 34,536 bytes +106‎ →‎Update hgcentral

7 June 2013

• curprev 23:0323:03, 7 June 2013‎ Brianlee talk contribs‎ 34,430 bytes +72‎ →‎Double-check /gbdb files

3 June 2013

• curprev 20:4720:47, 3 June 2013‎ Brianlee talk contribs‎ 34,358 bytes +12‎ →‎Double-check /gbdb files
• curprev 20:4620:46, 3 June 2013‎ Brianlee talk contribs‎ 34,346 bytes +221‎ →‎Double-check /gbdb files

30 May 2013

• curprev 23:5623:56, 30 May 2013‎ Rhead talk contribs‎ 34,125 bytes +1,019‎ added new section about genome-euro and the pullHgcentral script

9 May 2013

• curprev 23:5523:55, 9 May 2013‎ Ann talk contribs‎ 33,106 bytes +165‎ →‎blatServers

5 April 2013

• curprev 23:3223:32, 5 April 2013‎ Rhead talk contribs‎ 32,941 bytes +162‎ →‎Review all tracks in the sub-pushQ: pointed out that several checks are done for all tracks at once in these instructions
• curprev 23:2323:23, 5 April 2013‎ Rhead talk contribs‎ 32,779 bytes +222‎ →‎Review all tracks in the sub-pushQ: added link to new track checklist and a note that Restr Enzyme and Short Match tracks don't need to be QAed
• curprev 23:0723:07, 5 April 2013‎ Rhead talk contribs‎ 32,557 bytes +34‎ →‎Review all tracks in the sub-pushQ: added links to genbank and ensembl pages
• curprev 22:3422:34, 5 April 2013‎ Rhead talk contribs‎ 32,523 bytes −86‎ →‎joinerCheck: removed redundant change directory commands
• curprev 22:3422:34, 5 April 2013‎ Rhead talk contribs‎ 32,609 bytes +151‎ →‎Check that common keys between tables are in sync: added a check for times
• curprev 22:2622:26, 5 April 2013‎ Rhead talk contribs‎ 32,458 bytes +132‎ →‎Check that it is not symlink on hgnfs1, that there is only one file, and is not in a subdirectory: pointed out that you can check whether a file is a symlink on hgnfs1 by looking at it on hgwbeta

26 March 2013

• curprev 23:1923:19, 26 March 2013‎ Brianlee talk contribs‎ 32,326 bytes +313‎ →‎blatServers

22 March 2013

• curprev 23:2223:22, 22 March 2013‎ Brianlee talk contribs‎ 32,013 bytes −24‎ →‎genomeClade
• curprev 23:2023:20, 22 March 2013‎ Brianlee talk contribs‎ 32,037 bytes +230‎ →‎genomeClade
• curprev 23:1223:12, 22 March 2013‎ Rhead talk contribs‎ 31,807 bytes −177‎ →‎genomeClade and gdbPdb: got rid of gdbPdb reference and reworded
• curprev 23:0823:08, 22 March 2013‎ Rhead talk contribs‎ 31,984 bytes −67‎ →‎blatServers: reword
• curprev 22:2522:25, 22 March 2013‎ Rhead talk contribs‎ 32,051 bytes −65‎ →‎Push the database and tables from hgwdev to hgwbeta: removed instruction to drop user-specific trackDb and hgFindSpec tables when the list comes from the pushQ
• curprev 15:5915:59, 22 March 2013‎ Hiram talk contribs‎ 32,116 bytes +78‎ note: do not edit rr.dbs yet here

28 January 2013

• curprev 18:4518:45, 28 January 2013‎ Steve talk contribs‎ 32,038 bytes +15‎ Edited Genbank update section to add "install-server" portion to make - without it, Genbank update files don't make it to hgdownload

16 January 2013

• curprev 21:4521:45, 16 January 2013‎ Luvina talk contribs‎ 32,023 bytes −1‎ →‎Check that all of the MySQL tables are in good repair: script only works on dev

21 November 2012

• curprev 19:1419:14, 21 November 2012‎ Rhead talk contribs‎ 32,024 bytes +188‎ →‎Double-check /gbdb files: added note about using "ls -lL" to see timestamps

20 November 2012

• curprev 19:1019:10, 20 November 2012‎ Rhead talk contribs‎ 31,836 bytes +51‎ →‎Update hgcentral: clarified note about updating defaultDb

6 November 2012

• curprev 19:3219:32, 6 November 2012‎ Rhead talk contribs‎ 31,785 bytes +128‎ →‎Adjust the release log in main pushQ: added note about consensus on not listing downloads

28 August 2012

• curprev 23:5723:57, 28 August 2012‎ Rhead talk contribs‎ 31,657 bytes +241‎ added note to push hgFixed tables

24 August 2012

• curprev 03:1203:12, 24 August 2012‎ Rhead talk contribs‎ 31,416 bytes 0‎ →‎Update hgcentralbeta: moved liftOverChain bit after defaultDb bit

17 August 2012

• curprev 18:4618:46, 17 August 2012‎ Greg talk contribs‎ 31,416 bytes 0‎ replaced .cse. in urls to .soe. - Jorge said we should not use .cse. anymore.

15 August 2012

• curprev 21:2921:29, 15 August 2012‎ Braney talk contribs‎ 31,416 bytes −119‎ No edit summary

13 June 2012

• curprev 19:3119:31, 13 June 2012‎ Rhead talk contribs‎ 31,535 bytes −20‎ →‎Push the database and tables from hgwdev to hgwbeta: removed another instruction to leave out tableDescriptions table when pushing from dev to beta

• curprev 19:2819:28, 13 June 2012‎ Rhead talk contribs‎ 31,555 bytes −18‎ →‎Push the database and tables from hgwdev to hgwbeta: took out instruction to remove tableDescriptions