Outdated instructions for releasing an assembly: Revision history

1 August 2013

• curprev 23:3623:36, 1 August 2013‎ Brianlee talk contribs‎ 35,863 bytes +19‎ →‎Verify makedoc for all the tracks listed in the pushQ
• curprev 23:3523:35, 1 August 2013‎ Brianlee talk contribs‎ 35,844 bytes −1‎ →‎Check that all tables in this database are mentioned in all.joiner
• curprev 23:3423:34, 1 August 2013‎ Brianlee talk contribs‎ 35,845 bytes −1‎ →‎Check that table update times are copacetic
• curprev 23:3323:33, 1 August 2013‎ Brianlee talk contribs‎ 35,846 bytes −2‎ →‎Check that common keys between tables are in sync
• curprev 23:2823:28, 1 August 2013‎ Brianlee talk contribs‎ 35,848 bytes +70‎ →‎Check that it is not symlink on hgnfs1, that there is only one file, and is not in a subdirectory
• curprev 23:2223:22, 1 August 2013‎ Brianlee talk contribs‎ 35,778 bytes +10‎ →‎Review the phylogenetic location in pull-down menus on hgGateway
• curprev 23:2023:20, 1 August 2013‎ Brianlee talk contribs‎ 35,768 bytes −11‎ →‎Turn on GenBank updates
• curprev 23:1623:16, 1 August 2013‎ Brianlee talk contribs‎ 35,779 bytes −2‎ →‎Make trackDb on hgwbeta
• curprev 22:4622:46, 1 August 2013‎ Brianlee talk contribs‎ 35,781 bytes −2‎ →‎blatServers
• curprev 22:4422:44, 1 August 2013‎ Brianlee talk contribs‎ 35,783 bytes +11‎ →‎dbDb
• curprev 22:3922:39, 1 August 2013‎ Brianlee talk contribs‎ 35,772 bytes +10‎ →‎Push the database and tables from hgwdev to hgwbeta
• curprev 22:3522:35, 1 August 2013‎ Brianlee talk contribs‎ 35,762 bytes +13‎ →‎Push the database and tables from hgwdev to hgwbeta

30 July 2013

• curprev 19:1419:14, 30 July 2013‎ Brianlee talk contribs‎ 35,749 bytes +3‎ →‎Push /gbdb/$db and html/description.html
• curprev 18:4518:45, 30 July 2013‎ Brianlee talk contribs‎ 35,746 bytes +350‎ →‎Push the database and tables from hgwdev to hgwbeta

18 July 2013

• curprev 23:4423:44, 18 July 2013‎ Brianlee talk contribs‎ 35,396 bytes +274‎ →‎Push chain/net tables in other organisms

17 June 2013

• curprev 18:2818:28, 17 June 2013‎ Brianlee talk contribs‎ 35,122 bytes +96‎ →‎Turn on GenBank updates
• curprev 18:2518:25, 17 June 2013‎ Brianlee talk contribs‎ 35,026 bytes +160‎ →‎Turn on genbank updates on the RR

13 June 2013

• curprev 20:0320:03, 13 June 2013‎ Brianlee talk contribs‎ 34,866 bytes +264‎ →‎Update hgcentral.sql for mirrors

10 June 2013

• curprev 23:3323:33, 10 June 2013‎ Brianlee talk contribs‎ 34,602 bytes +77‎ →‎Update hgcentral
• curprev 23:1423:14, 10 June 2013‎ Brianlee talk contribs‎ 34,525 bytes −11‎ →‎Update hgcentral
• curprev 23:1023:10, 10 June 2013‎ Brianlee talk contribs‎ 34,536 bytes +106‎ →‎Update hgcentral

7 June 2013

• curprev 23:0323:03, 7 June 2013‎ Brianlee talk contribs‎ 34,430 bytes +72‎ →‎Double-check /gbdb files

3 June 2013

• curprev 20:4720:47, 3 June 2013‎ Brianlee talk contribs‎ 34,358 bytes +12‎ →‎Double-check /gbdb files
• curprev 20:4620:46, 3 June 2013‎ Brianlee talk contribs‎ 34,346 bytes +221‎ →‎Double-check /gbdb files

30 May 2013

• curprev 23:5623:56, 30 May 2013‎ Rhead talk contribs‎ 34,125 bytes +1,019‎ added new section about genome-euro and the pullHgcentral script

9 May 2013

• curprev 23:5523:55, 9 May 2013‎ Ann talk contribs‎ 33,106 bytes +165‎ →‎blatServers

5 April 2013

• curprev 23:3223:32, 5 April 2013‎ Rhead talk contribs‎ 32,941 bytes +162‎ →‎Review all tracks in the sub-pushQ: pointed out that several checks are done for all tracks at once in these instructions
• curprev 23:2323:23, 5 April 2013‎ Rhead talk contribs‎ 32,779 bytes +222‎ →‎Review all tracks in the sub-pushQ: added link to new track checklist and a note that Restr Enzyme and Short Match tracks don't need to be QAed
• curprev 23:0723:07, 5 April 2013‎ Rhead talk contribs‎ 32,557 bytes +34‎ →‎Review all tracks in the sub-pushQ: added links to genbank and ensembl pages
• curprev 22:3422:34, 5 April 2013‎ Rhead talk contribs‎ 32,523 bytes −86‎ →‎joinerCheck: removed redundant change directory commands
• curprev 22:3422:34, 5 April 2013‎ Rhead talk contribs‎ 32,609 bytes +151‎ →‎Check that common keys between tables are in sync: added a check for times
• curprev 22:2622:26, 5 April 2013‎ Rhead talk contribs‎ 32,458 bytes +132‎ →‎Check that it is not symlink on hgnfs1, that there is only one file, and is not in a subdirectory: pointed out that you can check whether a file is a symlink on hgnfs1 by looking at it on hgwbeta

26 March 2013

• curprev 23:1923:19, 26 March 2013‎ Brianlee talk contribs‎ 32,326 bytes +313‎ →‎blatServers

22 March 2013

• curprev 23:2223:22, 22 March 2013‎ Brianlee talk contribs‎ 32,013 bytes −24‎ →‎genomeClade
• curprev 23:2023:20, 22 March 2013‎ Brianlee talk contribs‎ 32,037 bytes +230‎ →‎genomeClade
• curprev 23:1223:12, 22 March 2013‎ Rhead talk contribs‎ 31,807 bytes −177‎ →‎genomeClade and gdbPdb: got rid of gdbPdb reference and reworded
• curprev 23:0823:08, 22 March 2013‎ Rhead talk contribs‎ 31,984 bytes −67‎ →‎blatServers: reword
• curprev 22:2522:25, 22 March 2013‎ Rhead talk contribs‎ 32,051 bytes −65‎ →‎Push the database and tables from hgwdev to hgwbeta: removed instruction to drop user-specific trackDb and hgFindSpec tables when the list comes from the pushQ
• curprev 15:5915:59, 22 March 2013‎ Hiram talk contribs‎ 32,116 bytes +78‎ note: do not edit rr.dbs yet here

28 January 2013

• curprev 18:4518:45, 28 January 2013‎ Steve talk contribs‎ 32,038 bytes +15‎ Edited Genbank update section to add "install-server" portion to make - without it, Genbank update files don't make it to hgdownload

16 January 2013

• curprev 21:4521:45, 16 January 2013‎ Luvina talk contribs‎ 32,023 bytes −1‎ →‎Check that all of the MySQL tables are in good repair: script only works on dev

21 November 2012

• curprev 19:1419:14, 21 November 2012‎ Rhead talk contribs‎ 32,024 bytes +188‎ →‎Double-check /gbdb files: added note about using "ls -lL" to see timestamps

20 November 2012

• curprev 19:1019:10, 20 November 2012‎ Rhead talk contribs‎ 31,836 bytes +51‎ →‎Update hgcentral: clarified note about updating defaultDb

6 November 2012

• curprev 19:3219:32, 6 November 2012‎ Rhead talk contribs‎ 31,785 bytes +128‎ →‎Adjust the release log in main pushQ: added note about consensus on not listing downloads

28 August 2012

• curprev 23:5723:57, 28 August 2012‎ Rhead talk contribs‎ 31,657 bytes +241‎ added note to push hgFixed tables

24 August 2012

• curprev 03:1203:12, 24 August 2012‎ Rhead talk contribs‎ 31,416 bytes 0‎ →‎Update hgcentralbeta: moved liftOverChain bit after defaultDb bit

17 August 2012

• curprev 18:4618:46, 17 August 2012‎ Greg talk contribs‎ 31,416 bytes 0‎ replaced .cse. in urls to .soe. - Jorge said we should not use .cse. anymore.

15 August 2012

• curprev 21:2921:29, 15 August 2012‎ Braney talk contribs‎ 31,416 bytes −119‎ No edit summary

13 June 2012

• curprev 19:3119:31, 13 June 2012‎ Rhead talk contribs‎ 31,535 bytes −20‎ →‎Push the database and tables from hgwdev to hgwbeta: removed another instruction to leave out tableDescriptions table when pushing from dev to beta

• curprev 19:2819:28, 13 June 2012‎ Rhead talk contribs‎ 31,555 bytes −18‎ →‎Push the database and tables from hgwdev to hgwbeta: took out instruction to remove tableDescriptions