QAing UCSC Genes: Revision history

9 September 2019

• curprev 23:0423:04, 9 September 2019‎ Brianlee talk contribs‎ 40,227 bytes +28‎ →‎PCR Target
• curprev 23:0323:03, 9 September 2019‎ Brianlee talk contribs‎ 40,199 bytes +358‎ →‎PCR Target
• curprev 22:2322:23, 9 September 2019‎ Brianlee talk contribs‎ 39,841 bytes +6‎ →‎PCR Target
• curprev 22:1822:18, 9 September 2019‎ Brianlee talk contribs‎ 39,835 bytes +295‎ →‎PCR Target: Adding a pending note so that we think about if old gfServers need to be turned off.

4 June 2019

• curprev 23:4923:49, 4 June 2019‎ Daniel talk contribs‎ 39,540 bytes −2‎ hgwbeta

1 September 2018

• curprev 08:0808:08, 1 September 2018‎ Galt talk contribs‎ 39,542 bytes 0‎ changed cse to soe

20 June 2016

• curprev 22:1822:18, 20 June 2016‎ Chmalee talk contribs‎ m 39,542 bytes +65‎ →‎Updating instructions for checking blatServer is using the correct two bit file

12 May 2014

• curprev 14:3914:39, 12 May 2014‎ Luvina talk contribs‎ 39,477 bytes −1‎ →‎UCSC Gene & GS Table Descriptions: fixed a typo

9 April 2014

• curprev 17:5317:53, 9 April 2014‎ Luvina talk contribs‎ 39,478 bytes +21‎ →‎QAing the Gene Set
• curprev 17:4517:45, 9 April 2014‎ Luvina talk contribs‎ 39,457 bytes +2‎ →‎QAing the Gene Set

17 March 2014

• curprev 22:2922:29, 17 March 2014‎ Steve talk contribs‎ 39,455 bytes −1‎ Typo... oops!
• curprev 22:2822:28, 17 March 2014‎ Steve talk contribs‎ 39,456 bytes +55‎ Added a small note to make it clear that some new IDs from the diffs file should be checked
• curprev 22:1422:14, 17 March 2014‎ Steve talk contribs‎ 39,401 bytes +1,255‎ Added additional information about identifying new IDs that are conglomerates of old IDs
• curprev 21:3621:36, 17 March 2014‎ Steve talk contribs‎ 38,146 bytes +1,979‎ Added additional instructions and clarification to the QAing the Gene Set section

8 July 2013

• curprev 16:1116:11, 8 July 2013‎ Luvina talk contribs‎ 36,167 bytes +1‎ →‎UCSC Gene & GS Table Descriptions
• curprev 16:1016:10, 8 July 2013‎ Luvina talk contribs‎ 36,166 bytes +34‎ →‎QAing the many related tables
• curprev 16:0716:07, 8 July 2013‎ Luvina talk contribs‎ 36,132 bytes +26‎ →‎PCR Target
• curprev 16:0416:04, 8 July 2013‎ Luvina talk contribs‎ 36,106 bytes +627‎ →‎QAing the Gene Set
• curprev 15:5515:55, 8 July 2013‎ Luvina talk contribs‎ 35,479 bytes −11‎ →‎joinerCheck

20 March 2013

• curprev 23:4223:42, 20 March 2013‎ Rhead talk contribs‎ 35,490 bytes +212‎ →‎joinerCheck: added note to make sure kg{N}ToKg{N+1} is in all.joiner

24 February 2012

• curprev 04:1604:16, 24 February 2012‎ Rhead talk contribs‎ 35,278 bytes +348‎ →‎QAing the many related tables: example loop for getting table row counts
• curprev 04:0604:06, 24 February 2012‎ Rhead talk contribs‎ 34,930 bytes +165‎ →‎QAing the Gene Set: one more note from Jim about checking kgXref
• curprev 03:5903:59, 24 February 2012‎ Rhead talk contribs‎ 34,765 bytes +458‎ Added FASTA Alignments section
• curprev 03:1503:15, 24 February 2012‎ Rhead talk contribs‎ 34,307 bytes +225‎ →‎QAing the Gene Set: Added featureBits note.
• curprev 03:1403:14, 24 February 2012‎ Rhead talk contribs‎ m 34,082 bytes −2‎ →‎QAing the uniProt and proteome databases
• curprev 03:1303:13, 24 February 2012‎ Rhead talk contribs‎ 34,084 bytes +186‎ →‎QAing the uniProt and proteome databases: formatting; adding note about symlinks
• curprev 02:1602:16, 24 February 2012‎ Rhead talk contribs‎ 33,898 bytes +225‎ →‎QAing the many related tables: list of tables that should have same counts
• curprev 01:2001:20, 24 February 2012‎ Rhead talk contribs‎ 33,673 bytes +786‎ added PCR Target section
• curprev 00:4600:46, 24 February 2012‎ Rhead talk contribs‎ 32,887 bytes −64‎ →‎Tables Related to UCSC Genes That are Separate tracks: noted that exoniphy will no longer be built
• curprev 00:4200:42, 24 February 2012‎ Rhead talk contribs‎ 32,951 bytes −133‎ removed links to other ucsc genes pages from bottom of page
• curprev 00:4100:41, 24 February 2012‎ Rhead talk contribs‎ 33,084 bytes +274‎ Moved intro information here from the Staging page
• curprev 00:2600:26, 24 February 2012‎ Rhead talk contribs‎ 32,810 bytes +66‎ →‎wiki pages about known genes: reordered links, added note about staging link

23 February 2012

• curprev 21:0421:04, 23 February 2012‎ Rhead talk contribs‎ 32,744 bytes +1,106‎ Added a section for QAing uniProt and proteome databases
• curprev 20:1120:11, 23 February 2012‎ Rhead talk contribs‎ 31,638 bytes +232‎ →‎QAing the many related tables: Added note to check Old UCSC Genes, Alt Events and blastTab tables.
• curprev 19:2919:29, 23 February 2012‎ Rhead talk contribs‎ 31,406 bytes −172‎ →‎wiki pages about known genes: turned links into wiki links
• curprev 06:3906:39, 23 February 2012‎ Rhead talk contribs‎ m 31,578 bytes 0‎ No edit summary
• curprev 06:3806:38, 23 February 2012‎ Rhead talk contribs‎ 31,578 bytes +23‎ →‎Links to Other UCSC Genes Genomewiki Pages: added ucsc genes tables link
• curprev 06:3706:37, 23 February 2012‎ Rhead talk contribs‎ 31,555 bytes −17‎ collapsted the re-build problem section into the QAing the related tables section
• curprev 06:3306:33, 23 February 2012‎ Rhead talk contribs‎ 31,572 bytes +337‎ added suggestions for dealing with redmine tickets
• curprev 06:2806:28, 23 February 2012‎ Rhead talk contribs‎ 31,235 bytes +781‎ Added sections for a common rebuild pitfall and for QAing the many related tables
• curprev 06:1306:13, 23 February 2012‎ Rhead talk contribs‎ 30,454 bytes +252‎ Made "Comparison to previous build" section specifically about human and mouse; added instruction to get help from developer/jim
• curprev 06:0406:04, 23 February 2012‎ Rhead talk contribs‎ 30,202 bytes −41‎ →‎Determining the tables involved: fixed link
• curprev 06:0206:02, 23 February 2012‎ Rhead talk contribs‎ 30,243 bytes −1,224‎ Removed HGGeneCheck instructions. This takes a week and failed to find errors in many runs, including several real errors for rn4.

14 February 2012

• curprev 00:2400:24, 14 February 2012‎ Rhead talk contribs‎ 31,467 bytes +64‎ →‎wiki pages about known genes: added new ucsc genes tables page

24 January 2012

• curprev 05:4905:49, 24 January 2012‎ Rhead talk contribs‎ 31,403 bytes 0‎ →‎Comparison to previous build: updated second table with stats after rebuild of ucsc genes
• curprev 05:4905:49, 24 January 2012‎ Rhead talk contribs‎ 31,403 bytes 0‎ →‎Comparison to previous build: updated table with stats after rebuild of ucsc genes

4 November 2011

• curprev 23:1823:18, 4 November 2011‎ Rhead talk contribs‎ 31,403 bytes +78‎ →‎Comparison to previous build: added note to check counts in knownCanonical, too
• curprev 22:0122:01, 4 November 2011‎ Rhead talk contribs‎ 31,325 bytes +113‎ →‎HGGeneCheck: lots of small clarifications
• curprev 21:2321:23, 4 November 2011‎ Rhead talk contribs‎ 31,212 bytes +1,987‎ added "comparison to previous build" section based on notes from Jim

• curprev 20:4520:45, 4 November 2011‎ Rhead talk contribs‎ 29,225 bytes +70‎ →‎Other random notes: changed the header, clarified sentence.