User contributions for AngieHinrichs
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13 January 2015
- 01:1301:13, 13 January 2015 diff hist +2,785 UI with ReactJS and ImmutableJS added a bit of background
- 00:0100:01, 13 January 2015 diff hist +3,429 UI with ReactJS and ImmutableJS →The CGI speaks JSON now
12 January 2015
- 21:1321:13, 12 January 2015 diff hist +987 N UI with ReactJS and ImmutableJS initial outline
20 November 2014
- 18:4818:48, 20 November 2014 diff hist +20 m ExonMostlyDesignMeeting 11-19-14 →A. Horizontal option: Keep logic very similar to now: couple minor clarifications current
- 18:4418:44, 20 November 2014 diff hist +205 ExonMostlyDesignMeeting 11-19-14 Added photos of whiteboard & Galt's notes
- 18:3818:38, 20 November 2014 diff hist +134 N File:1119141503 Galt.jpg Galt's drawing of alt-in-the-middle whiteboard drawing (erased before whiteboard photos) from exon-mostly design meeting Nov. 19, 2014 current
- 18:3318:33, 20 November 2014 diff hist +62 N File:1119141503 right.jpg Right whiteboard from exon-mostly design meeting Nov. 19, 2014 current
- 18:3318:33, 20 November 2014 diff hist +61 N File:1119141504 left.jpg Left whiteboard from exon-mostly design meeting Nov. 19, 2014 current
- 18:0618:06, 20 November 2014 diff hist +3 m ExonMostlyDesignMeeting 11-19-14 →Recommendations: typo fix
19 November 2014
- 23:2323:23, 19 November 2014 diff hist +3,660 N ExonMostlyDesignMeeting 11-19-14 Created page with "= Options for how many features to support = == Only parts from one range == "exon mostly" == Allow mult chromosome pieces and ordering, all same strand == Then we could also ..."
9 September 2014
- 19:1619:16, 9 September 2014 diff hist +1,733 ExonMostlyInitialDesignMeeting Added 'what we didn't talk about' section with questions raised by Braney & Max after the meeting. current
- 19:1019:10, 9 September 2014 diff hist +4,705 ExonMostlyInitialDesignMeeting Some higher-level issues, things that didn't make it onto the whiteboard, and follow-on thoughts from the initial meeting.
5 September 2014
- 18:4118:41, 5 September 2014 diff hist +2,518 N ExonMostlyInitialDesignMeetingWhiteboard Angie's transcription of whiteboard photos -- [?] where I'm not sure that I read a word correctly. current
- 18:1218:12, 5 September 2014 diff hist +373 N ExonMostlyInitialDesignMeeting At this point just pointing to ExonMostlyInitialDesignMeetingWhiteboard which I'm about to add...
- 17:5417:54, 5 September 2014 diff hist +81 N File:14 09 03 exonMostlyDesignMtg 2.jpg whiteboard notes from "exon-mostly" display design meeting, Sep. 3 2014 (2 of 2) current
- 17:5317:53, 5 September 2014 diff hist +81 N File:14 09 03 exonMostlyDesignMtg 1.jpg whiteboard notes from "exon-mostly" display design meeting, Sep. 3 2014 (1 of 2) current
11 November 2013
- 20:0020:00, 11 November 2013 diff hist 0 m QA scripts →ENCODE QA scripts: moving getTrackReferences into alphabetical order
- 19:5919:59, 11 November 2013 diff hist −4 QA scripts →qaAddTrackReferences: this was renamed to addTrackReferences
12 March 2012
- 17:3517:35, 12 March 2012 diff hist +328 VariantAnnotationTool →High-level interfaces: annoGrator.h: Updating with more details about core objects. current
10 March 2012
- 00:2800:28, 10 March 2012 diff hist −1 VariantAnnotationTool →Integrators: Base class does the "generic" functionality.
- 00:2500:25, 10 March 2012 diff hist +289 VariantAnnotationTool →Who's going to do what?: Updating with what Brian and I are working on now.
9 March 2012
- 23:3523:35, 9 March 2012 diff hist −672 VariantAnnotationTool →Input modules: For most data types, we don't need type-specific streamers; downstream modules use autoSql to get smarts about data types.
22 February 2012
- 17:5917:59, 22 February 2012 diff hist +1,060 Make your own virtual space →Keep it current:: Now that we use Git, this may not be advisable anymore.
- 17:2817:28, 22 February 2012 diff hist +325 Make your own virtual space →Prepare for the making of your CGIs: Remove the bit about making a symlink for js since Larry fixed that (#7025). Improved instructions for creating ~/.hg.conf (Does that belong on this page?)
14 February 2012
- 00:4000:40, 14 February 2012 diff hist +88 m VariantAnnotationTool →Input modules: oops, forgot GAF and BAM in streamer list
- 00:3200:32, 14 February 2012 diff hist +211 VariantAnnotationTool →Shared git branch: Oops, git push doesn't stick to the current branch like git pull does.
13 February 2012
- 23:4523:45, 13 February 2012 diff hist +1,170 VariantAnnotationTool →Implementation plan: Adding sections that list subclasses that will actually do the work
- 19:5519:55, 13 February 2012 diff hist 0 m VariantAnnotationTool →command line: Capitalize title to make it look more like its own section, as it is, and less like a subsection of Web UI.
- 19:5419:54, 13 February 2012 diff hist +80 VariantAnnotationTool →CGI: Change section name to Web UI
- 19:5119:51, 13 February 2012 diff hist +101 VariantAnnotationTool →Command line mode: Updating to describe config.ra (cant' stuff all that into command-line options IMO).
- 18:1518:15, 13 February 2012 diff hist +355 VariantAnnotationTool →Implementation plan: overview: command line first while web UI design happens in parallel
- 18:0718:07, 13 February 2012 diff hist +915 VariantAnnotationTool →Implementation plan: who's going to do what?: Subsections, updates to annoGrator, shared git branch.
8 February 2012
- 19:2719:27, 8 February 2012 diff hist +16 VariantAnnotationTool Moved Name section down
7 February 2012
- 23:2023:20, 7 February 2012 diff hist +1,533 VariantAnnotationTool →Implementation plan: who's going to do what?: Proposing object hierarchy, leaving all the hard parts to subclasses.
- 22:4122:41, 7 February 2012 diff hist +775 VariantAnnotationTool →command line: Strawman config.ra.
- 19:4719:47, 7 February 2012 diff hist +4 m VariantAnnotationTool →Novel variant calls from sequencing experiment: David's suggestion: mention VCF before mentioning BAM
6 February 2012
- 17:2817:28, 6 February 2012 diff hist +54 VariantAnnotationTool →Links to Similar Tools: added NCBI's Variation Reporter Tool
- 17:2417:24, 6 February 2012 diff hist +14 m VariantAnnotationTool →Output: mention ranking
- 17:2017:20, 6 February 2012 diff hist +298 VariantAnnotationTool →Input: Mention annotation inputs as well.
- 17:1317:13, 6 February 2012 diff hist +48 m VariantAnnotationTool →Implementation plan: who's going to do what?
- 17:1217:12, 6 February 2012 diff hist +17 m VariantAnnotationTool →Command line mode: clarification: most code will be in libs.
3 February 2012
- 18:2318:23, 3 February 2012 diff hist +125 VariantAnnotationTool →Output: Added a couple options from design meeting
25 January 2012
- 23:1223:12, 25 January 2012 diff hist +31 m VariantAnnotationTool →Input: wording tweak
- 23:0923:09, 25 January 2012 diff hist +451 VariantAnnotationTool →Input: Moved BAM and pileup into "maybe later", to focus on variant call inputs. Replaced question about indels/MNPs with Types of Variation section.
18 January 2012
- 22:1222:12, 18 January 2012 diff hist +913 VariantAnnotationTool →Introduction
- 21:3421:34, 18 January 2012 diff hist +18 m VariantAnnotationTool Added introduction section.
- 21:0921:09, 18 January 2012 diff hist +44 VariantAnnotationTool →Main page
- 21:0221:02, 18 January 2012 diff hist +130 VariantAnnotationTool →List of rs IDs
- 21:0121:01, 18 January 2012 diff hist +1,025 VariantAnnotationTool Added MLQ requests section. →Novel variant calls from sequencing experiment: -- draft.
- 19:1819:18, 18 January 2012 diff hist +1,294 N VariantAnnotationTool Template design doc for proposed Variant Annotation Tool, from Ann's suggestions (Redmine #6152), with some strawman contents
