User contributions for Cath
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11 January 2018
- 17:1417:14, 11 January 2018 diff hist +176 m Outdated instructions for releasing an assembly Adding a note to point to the new wiki since this one is outdated.
10 January 2018
- 20:0720:07, 10 January 2018 diff hist −9 m Conservation Track QA →Example push requests
- 20:0620:06, 10 January 2018 diff hist +609 Conservation Track QA No edit summary
- 16:5816:58, 10 January 2018 diff hist +425 m Conservation Track QA No edit summary
9 January 2018
- 17:4117:41, 9 January 2018 diff hist +1,424 GRC Patch Release Adding a note about defaultDb
5 January 2018
- 23:0623:06, 5 January 2018 diff hist +87 m Conservation Track QA →Find out how phastCons was run
- 23:0323:03, 5 January 2018 diff hist +133 m Conservation Track QA →Check trackDb.ra file
- 22:3922:39, 5 January 2018 diff hist −79 m Conservation Track QA →Check trackDb.ra file
- 19:5219:52, 5 January 2018 diff hist +501 Chains and Nets QA Making a note about reciprocal best tables and files.
4 January 2018
- 22:0222:02, 4 January 2018 diff hist +151 Assembly QA Part 1 DEV Steps Adding checklist item for ensuring that the new assembly is defined in trackDb makefile
- 01:0801:08, 4 January 2018 diff hist +149 Chains and Nets QA Adding loop example
15 December 2017
- 01:0701:07, 15 December 2017 diff hist +88 Conservation Track QA →Check multizway#wayFrames table
12 December 2017
- 22:2722:27, 12 December 2017 diff hist +201 m Conservation Track QA →Examine and possibly push records for the extFile and seq tables
- 22:1422:14, 12 December 2017 diff hist 0 m Conservation Track QA →Examine and possible push records for the extFile and seq tables
- 22:1422:14, 12 December 2017 diff hist +1,285 m Conservation Track QA →Examine and possible push records for the extFile and seq tables
- 22:1222:12, 12 December 2017 diff hist +205 m Conservation Track QA →Figure out extFile and seq tables
- 22:0922:09, 12 December 2017 diff hist +768 Conservation Track QA →Figure out extFile and seq tables: Adding example for extFile script dev> beta push
4 December 2017
- 21:2321:23, 4 December 2017 diff hist +594 m Conservation Track QA No edit summary
29 November 2017
- 17:5817:58, 29 November 2017 diff hist +63 m Main Page →Categories frequently used
20 November 2017
- 17:3517:35, 20 November 2017 diff hist +1 m Main Page →Categories frequently used
- 17:3317:33, 20 November 2017 diff hist +329 m Main Page →Categories frequently used
- 17:3317:33, 20 November 2017 diff hist −6 m Monitoring Tasks Notes →SLA Monitoring & Reporting
15 November 2017
- 18:3918:39, 15 November 2017 diff hist +39 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr, euro, asia from rsync push
14 November 2017
- 21:2821:28, 14 November 2017 diff hist +1 m Assembly QA Part 3 BETA Steps →Beta: Push gbdb files
- 18:2218:22, 14 November 2017 diff hist +199 m Assembly QA Part 2 Track Steps →Tracks: GenBank: Review GenBank QA steps
- 18:0918:09, 14 November 2017 diff hist +8 m Assembly QA Part 2 Track Steps →Tracks: FeatureBits and Gaps
- 18:0918:09, 14 November 2017 diff hist +12 m Assembly QA Part 2 Track Steps →Tracks: pslCheck
- 18:0918:09, 14 November 2017 diff hist +12 m Assembly QA Part 2 Track Steps →Tracks: genePredCheck
- 17:1417:14, 14 November 2017 diff hist +21 m Assembly QA Part 4 RR Steps No edit summary
- 17:1317:13, 14 November 2017 diff hist +21 m Assembly QA Part 3 BETA Steps No edit summary
- 17:1317:13, 14 November 2017 diff hist +21 m Assembly QA Part 2 Track Steps No edit summary
- 17:1217:12, 14 November 2017 diff hist +60 m Assembly QA Part 1 DEV Steps No edit summary
- 17:1117:11, 14 November 2017 diff hist −40 m Assembly QA Part 1 DEV Steps No edit summary
- 17:0517:05, 14 November 2017 diff hist −4 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 17:0317:03, 14 November 2017 diff hist −4 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 17:0017:00, 14 November 2017 diff hist +882 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 02:4102:41, 14 November 2017 diff hist +179 m Assembly QA Part 1 DEV Steps →Dev: Review notes for md5sum checks
- 02:3502:35, 14 November 2017 diff hist −39 m Assembly QA Part 1 DEV Steps →Dev: Make temp in home dir for md5sum checks
- 00:4000:40, 14 November 2017 diff hist +4 m Assembly QA Part 2 Track Steps →Tracks: The BIG QA Script: qaGbTracks
13 November 2017
- 23:5523:55, 13 November 2017 diff hist +1 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 23:5523:55, 13 November 2017 diff hist +4 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 23:3023:30, 13 November 2017 diff hist −512 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 23:1123:11, 13 November 2017 diff hist +9 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 22:0322:03, 13 November 2017 diff hist +76 m Assembly QA Part 4 RR Steps →RR: Write release log text in Redmine and close
- 22:0222:02, 13 November 2017 diff hist +140 m Assembly QA Part 4 RR Steps →RR: Write release log text in Redmine and close
11 November 2017
- 02:1002:10, 11 November 2017 diff hist +82 m Assembly QA Part 2 Track Steps →Tracks: The BIG QA Script: qaGbTracks
10 November 2017
- 00:5300:53, 10 November 2017 diff hist +115 m Assembly QA Part 4 RR Steps →RR: Check public genome-mysql
- 00:5000:50, 10 November 2017 diff hist +16 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr, euro, asia from rsync push
- 00:4900:49, 10 November 2017 diff hist −29 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr, euro, asia from rsync push
- 00:0000:00, 10 November 2017 diff hist +12 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
9 November 2017
- 23:5623:56, 9 November 2017 diff hist +413 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test db defaultDb beta rr
- 23:2423:24, 9 November 2017 diff hist +109 m Assembly QA Part 4 RR Steps →RR: Push complete for currentGenomes symlink
- 23:2023:20, 9 November 2017 diff hist +13 m Assembly QA Part 4 RR Steps →RR: copyHgcentral: liftOverChain: manual move
- 23:1723:17, 9 November 2017 diff hist +426 m Assembly QA Part 4 RR Steps →RR: copyHgcentral: liftOverChain: manual move
- 21:2821:28, 9 November 2017 diff hist +1 m Assembly QA Part 3 BETA Steps →Beta: Re push any tables if needed after checking updateTimes
- 21:1621:16, 9 November 2017 diff hist +354 m Assembly QA Part 3 BETA Steps →Beta: Do chain net quick qa or full qa
8 November 2017
- 23:2923:29, 8 November 2017 diff hist +39 m Assembly QA Part 4 RR Steps →RR: GenBank updates: check Genbank update times
- 23:2823:28, 8 November 2017 diff hist +107 m Assembly QA Part 4 RR Steps →RR: Turn on GenBank updates add:commit:push
- 23:2623:26, 8 November 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Beta: GenBank updates: make libs and run make
- 23:2423:24, 8 November 2017 diff hist +5 m Assembly QA Part 3 BETA Steps →Beta: GenBank updates: make libs and run make
7 November 2017
- 00:5800:58, 7 November 2017 diff hist +163 m Assembly QA Part 4 RR Steps →RR: Turn on GenBank updates add:commit:push
- 00:5800:58, 7 November 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Check that your assembly is listed in align:dbs
6 November 2017
- 20:3420:34, 6 November 2017 diff hist +1 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 20:3320:33, 6 November 2017 diff hist +7 m Assembly QA Part 4 RR Steps →RR: Check genome:mysql
- 20:3320:33, 6 November 2017 diff hist +77 m Assembly QA Part 4 RR Steps →RR: Check genome:mysql
- 20:3120:31, 6 November 2017 diff hist +143 m Assembly QA Part 4 RR Steps →RR: Check genome:mysql
- 20:2820:28, 6 November 2017 diff hist +81 m Assembly QA Part 4 RR Steps →RR: Request push: hgdownload files
- 20:2820:28, 6 November 2017 diff hist −81 m Assembly QA Part 4 RR Steps →RR: Push complete for downloads
- 20:0920:09, 6 November 2017 diff hist +224 m Ensembl QA No edit summary
- 19:1219:12, 6 November 2017 diff hist +377 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 19:0219:02, 6 November 2017 diff hist +120 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 18:5818:58, 6 November 2017 diff hist +485 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 18:5518:55, 6 November 2017 diff hist +1,316 m Assembly QA Part 4 RR Steps →RR: Push complete for rsync database
- 18:4818:48, 6 November 2017 diff hist +57 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 18:0618:06, 6 November 2017 diff hist +12 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
3 November 2017
- 23:4223:42, 3 November 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Request push: chain nets for other assemblies
- 23:3123:31, 3 November 2017 diff hist −58 m Assembly QA Part 4 RR Steps →RR: Request push: chain nets for other assemblies
- 23:3023:30, 3 November 2017 diff hist +50 m Assembly QA Part 4 RR Steps →RR: Check for correct row in hgFixed.trackVersion for Ensembl tracks
- 23:2923:29, 3 November 2017 diff hist −114 m Assembly QA Part 4 RR Steps →RR: Check for Ensembl tracks
- 23:2823:28, 3 November 2017 diff hist −62 m Assembly QA Part 4 RR Steps →RR: Request push: rsync complete database
- 23:1823:18, 3 November 2017 diff hist +562 m Assembly QA Part 4 RR Steps →RR: Check for Ensembl tracks
- 21:1521:15, 3 November 2017 diff hist +6 m CGI testing responsibilities →Cath
- 21:1521:15, 3 November 2017 diff hist +162 m CGI testing responsibilities →Cath
- 20:2720:27, 3 November 2017 diff hist +133 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:1019:10, 3 November 2017 diff hist +11 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral: liftOverChain: manual move
- 19:0919:09, 3 November 2017 diff hist −7 m Assembly QA Part 3 BETA Steps →Beta: Push all tables for your assembly to beta
- 19:0819:08, 3 November 2017 diff hist +100 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 19:0419:04, 3 November 2017 diff hist +86 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:0319:03, 3 November 2017 diff hist +22 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:0219:02, 3 November 2017 diff hist +2 m Assembly QA Part 3 BETA Steps →Beta: Make table PUSH lists for each assembly
- 19:0219:02, 3 November 2017 diff hist +64 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 19:0119:01, 3 November 2017 diff hist +10 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:0019:00, 3 November 2017 diff hist +109 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 18:5918:59, 3 November 2017 diff hist +637 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 18:4118:41, 3 November 2017 diff hist +603 m Assembly QA Part 3 BETA Steps →Beta: Remove seq and extFile tables from your HIVE table list
- 03:0203:02, 3 November 2017 diff hist +86 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral: liftOverChain: manual move
- 03:0203:02, 3 November 2017 diff hist +329 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral: liftOverChain: manual move
- 02:0502:05, 3 November 2017 diff hist +131 m Assembly QA Part 3 BETA Steps →Beta: Push all tables for your assembly to beta
- 01:5801:58, 3 November 2017 diff hist +133 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 00:4800:48, 3 November 2017 diff hist +140 m Assembly QA Part 3 BETA Steps →Beta: Remove trackDb and hgFindSpec tables from your HIVE table list