User contributions for Cath
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11 January 2018
- 17:1417:14, 11 January 2018 diff hist +176 m Outdated instructions for releasing an assembly Adding a note to point to the new wiki since this one is outdated.
10 January 2018
- 20:0720:07, 10 January 2018 diff hist −9 m Conservation Track QA →Example push requests
- 20:0620:06, 10 January 2018 diff hist +609 Conservation Track QA No edit summary
- 16:5816:58, 10 January 2018 diff hist +425 m Conservation Track QA No edit summary
9 January 2018
- 17:4117:41, 9 January 2018 diff hist +1,424 GRC Patch Release Adding a note about defaultDb
5 January 2018
- 23:0623:06, 5 January 2018 diff hist +87 m Conservation Track QA →Find out how phastCons was run
- 23:0323:03, 5 January 2018 diff hist +133 m Conservation Track QA →Check trackDb.ra file
- 22:3922:39, 5 January 2018 diff hist −79 m Conservation Track QA →Check trackDb.ra file
- 19:5219:52, 5 January 2018 diff hist +501 Chains and Nets QA Making a note about reciprocal best tables and files.
4 January 2018
- 22:0222:02, 4 January 2018 diff hist +151 Assembly QA Part 1 DEV Steps Adding checklist item for ensuring that the new assembly is defined in trackDb makefile
- 01:0801:08, 4 January 2018 diff hist +149 Chains and Nets QA Adding loop example
15 December 2017
- 01:0701:07, 15 December 2017 diff hist +88 Conservation Track QA →Check multizway#wayFrames table
12 December 2017
- 22:2722:27, 12 December 2017 diff hist +201 m Conservation Track QA →Examine and possibly push records for the extFile and seq tables
- 22:1422:14, 12 December 2017 diff hist 0 m Conservation Track QA →Examine and possible push records for the extFile and seq tables
- 22:1422:14, 12 December 2017 diff hist +1,285 m Conservation Track QA →Examine and possible push records for the extFile and seq tables
- 22:1222:12, 12 December 2017 diff hist +205 m Conservation Track QA →Figure out extFile and seq tables
- 22:0922:09, 12 December 2017 diff hist +768 Conservation Track QA →Figure out extFile and seq tables: Adding example for extFile script dev> beta push
4 December 2017
- 21:2321:23, 4 December 2017 diff hist +594 m Conservation Track QA No edit summary
29 November 2017
- 17:5817:58, 29 November 2017 diff hist +63 m Main Page →Categories frequently used
20 November 2017
- 17:3517:35, 20 November 2017 diff hist +1 m Main Page →Categories frequently used
- 17:3317:33, 20 November 2017 diff hist +329 m Main Page →Categories frequently used
- 17:3317:33, 20 November 2017 diff hist −6 m Monitoring Tasks Notes →SLA Monitoring & Reporting
15 November 2017
- 18:3918:39, 15 November 2017 diff hist +39 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr, euro, asia from rsync push
14 November 2017
- 21:2821:28, 14 November 2017 diff hist +1 m Assembly QA Part 3 BETA Steps →Beta: Push gbdb files
- 18:2218:22, 14 November 2017 diff hist +199 m Assembly QA Part 2 Track Steps →Tracks: GenBank: Review GenBank QA steps
- 18:0918:09, 14 November 2017 diff hist +8 m Assembly QA Part 2 Track Steps →Tracks: FeatureBits and Gaps
- 18:0918:09, 14 November 2017 diff hist +12 m Assembly QA Part 2 Track Steps →Tracks: pslCheck
- 18:0918:09, 14 November 2017 diff hist +12 m Assembly QA Part 2 Track Steps →Tracks: genePredCheck
- 17:1417:14, 14 November 2017 diff hist +21 m Assembly QA Part 4 RR Steps No edit summary
- 17:1317:13, 14 November 2017 diff hist +21 m Assembly QA Part 3 BETA Steps No edit summary
- 17:1317:13, 14 November 2017 diff hist +21 m Assembly QA Part 2 Track Steps No edit summary
- 17:1217:12, 14 November 2017 diff hist +60 m Assembly QA Part 1 DEV Steps No edit summary
- 17:1117:11, 14 November 2017 diff hist −40 m Assembly QA Part 1 DEV Steps No edit summary
- 17:0517:05, 14 November 2017 diff hist −4 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 17:0317:03, 14 November 2017 diff hist −4 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 17:0017:00, 14 November 2017 diff hist +882 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 02:4102:41, 14 November 2017 diff hist +179 m Assembly QA Part 1 DEV Steps →Dev: Review notes for md5sum checks
- 02:3502:35, 14 November 2017 diff hist −39 m Assembly QA Part 1 DEV Steps →Dev: Make temp in home dir for md5sum checks
- 00:4000:40, 14 November 2017 diff hist +4 m Assembly QA Part 2 Track Steps →Tracks: The BIG QA Script: qaGbTracks
13 November 2017
- 23:5523:55, 13 November 2017 diff hist +1 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 23:5523:55, 13 November 2017 diff hist +4 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 23:3023:30, 13 November 2017 diff hist −512 m Assembly QA Part 1 DEV Steps →Dev: Verify make doc for all tracks
- 23:1123:11, 13 November 2017 diff hist +9 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 22:0322:03, 13 November 2017 diff hist +76 m Assembly QA Part 4 RR Steps →RR: Write release log text in Redmine and close
- 22:0222:02, 13 November 2017 diff hist +140 m Assembly QA Part 4 RR Steps →RR: Write release log text in Redmine and close
11 November 2017
- 02:1002:10, 11 November 2017 diff hist +82 m Assembly QA Part 2 Track Steps →Tracks: The BIG QA Script: qaGbTracks
10 November 2017
- 00:5300:53, 10 November 2017 diff hist +115 m Assembly QA Part 4 RR Steps →RR: Check public genome-mysql
- 00:5000:50, 10 November 2017 diff hist +16 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr, euro, asia from rsync push
- 00:4900:49, 10 November 2017 diff hist −29 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr, euro, asia from rsync push
- 00:0000:00, 10 November 2017 diff hist +12 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
9 November 2017
- 23:5623:56, 9 November 2017 diff hist +413 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test db defaultDb beta rr
- 23:2423:24, 9 November 2017 diff hist +109 m Assembly QA Part 4 RR Steps →RR: Push complete for currentGenomes symlink
- 23:2023:20, 9 November 2017 diff hist +13 m Assembly QA Part 4 RR Steps →RR: copyHgcentral: liftOverChain: manual move
- 23:1723:17, 9 November 2017 diff hist +426 m Assembly QA Part 4 RR Steps →RR: copyHgcentral: liftOverChain: manual move
- 21:2821:28, 9 November 2017 diff hist +1 m Assembly QA Part 3 BETA Steps →Beta: Re push any tables if needed after checking updateTimes
- 21:1621:16, 9 November 2017 diff hist +354 m Assembly QA Part 3 BETA Steps →Beta: Do chain net quick qa or full qa
8 November 2017
- 23:2923:29, 8 November 2017 diff hist +39 m Assembly QA Part 4 RR Steps →RR: GenBank updates: check Genbank update times
- 23:2823:28, 8 November 2017 diff hist +107 m Assembly QA Part 4 RR Steps →RR: Turn on GenBank updates add:commit:push
- 23:2623:26, 8 November 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Beta: GenBank updates: make libs and run make
- 23:2423:24, 8 November 2017 diff hist +5 m Assembly QA Part 3 BETA Steps →Beta: GenBank updates: make libs and run make
7 November 2017
- 00:5800:58, 7 November 2017 diff hist +163 m Assembly QA Part 4 RR Steps →RR: Turn on GenBank updates add:commit:push
- 00:5800:58, 7 November 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Check that your assembly is listed in align:dbs
6 November 2017
- 20:3420:34, 6 November 2017 diff hist +1 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 20:3320:33, 6 November 2017 diff hist +7 m Assembly QA Part 4 RR Steps →RR: Check genome:mysql
- 20:3320:33, 6 November 2017 diff hist +77 m Assembly QA Part 4 RR Steps →RR: Check genome:mysql
- 20:3120:31, 6 November 2017 diff hist +143 m Assembly QA Part 4 RR Steps →RR: Check genome:mysql
- 20:2820:28, 6 November 2017 diff hist +81 m Assembly QA Part 4 RR Steps →RR: Request push: hgdownload files
- 20:2820:28, 6 November 2017 diff hist −81 m Assembly QA Part 4 RR Steps →RR: Push complete for downloads
- 20:0920:09, 6 November 2017 diff hist +224 m Ensembl QA No edit summary
- 19:1219:12, 6 November 2017 diff hist +377 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 19:0219:02, 6 November 2017 diff hist +120 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 18:5818:58, 6 November 2017 diff hist +485 m Assembly QA Part 4 RR Steps →RR: Double check tables on mysqlrr from rsync push
- 18:5518:55, 6 November 2017 diff hist +1,316 m Assembly QA Part 4 RR Steps →RR: Push complete for rsync database
- 18:4818:48, 6 November 2017 diff hist +57 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 18:0618:06, 6 November 2017 diff hist +12 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
3 November 2017
- 23:4223:42, 3 November 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Request push: chain nets for other assemblies
- 23:3123:31, 3 November 2017 diff hist −58 m Assembly QA Part 4 RR Steps →RR: Request push: chain nets for other assemblies
- 23:3023:30, 3 November 2017 diff hist +50 m Assembly QA Part 4 RR Steps →RR: Check for correct row in hgFixed.trackVersion for Ensembl tracks
- 23:2923:29, 3 November 2017 diff hist −114 m Assembly QA Part 4 RR Steps →RR: Check for Ensembl tracks
- 23:2823:28, 3 November 2017 diff hist −62 m Assembly QA Part 4 RR Steps →RR: Request push: rsync complete database
- 23:1823:18, 3 November 2017 diff hist +562 m Assembly QA Part 4 RR Steps →RR: Check for Ensembl tracks
- 21:1521:15, 3 November 2017 diff hist +6 m CGI testing responsibilities →Cath
- 21:1521:15, 3 November 2017 diff hist +162 m CGI testing responsibilities →Cath
- 20:2720:27, 3 November 2017 diff hist +133 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:1019:10, 3 November 2017 diff hist +11 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral: liftOverChain: manual move
- 19:0919:09, 3 November 2017 diff hist −7 m Assembly QA Part 3 BETA Steps →Beta: Push all tables for your assembly to beta
- 19:0819:08, 3 November 2017 diff hist +100 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 19:0419:04, 3 November 2017 diff hist +86 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:0319:03, 3 November 2017 diff hist +22 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:0219:02, 3 November 2017 diff hist +2 m Assembly QA Part 3 BETA Steps →Beta: Make table PUSH lists for each assembly
- 19:0219:02, 3 November 2017 diff hist +64 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 19:0119:01, 3 November 2017 diff hist +10 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 19:0019:00, 3 November 2017 diff hist +109 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list
- 18:5918:59, 3 November 2017 diff hist +637 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 18:4118:41, 3 November 2017 diff hist +603 m Assembly QA Part 3 BETA Steps →Beta: Remove seq and extFile tables from your HIVE table list
- 03:0203:02, 3 November 2017 diff hist +86 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral: liftOverChain: manual move
- 03:0203:02, 3 November 2017 diff hist +329 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral: liftOverChain: manual move
- 02:0502:05, 3 November 2017 diff hist +131 m Assembly QA Part 3 BETA Steps →Beta: Push all tables for your assembly to beta
- 01:5801:58, 3 November 2017 diff hist +133 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 00:4800:48, 3 November 2017 diff hist +140 m Assembly QA Part 3 BETA Steps →Beta: Remove trackDb and hgFindSpec tables from your HIVE table list
2 November 2017
- 17:0417:04, 2 November 2017 diff hist −7 m Assembly QA Part 3 BETA Steps →Beta: Re push any tables if needed after checking updateTimes
- 16:5716:57, 2 November 2017 diff hist +196 m Assembly QA Part 3 BETA Steps →Beta: Re push any tables if needed after checking updateTimes
1 November 2017
- 22:3822:38, 1 November 2017 diff hist +10 m Assembly QA Part 2 Track Steps →Tracks: Checking track search
- 22:3322:33, 1 November 2017 diff hist +187 m Assembly QA Part 2 Track Steps →Tracks: Checking track search
- 22:3122:31, 1 November 2017 diff hist +93 m Assembly QA Part 2 Track Steps →Tracks: Checking track search
- 22:2822:28, 1 November 2017 diff hist +138 m Assembly QA Part 2 Track Steps →Tracks: Checking track search
26 October 2017
- 17:4517:45, 26 October 2017 diff hist +173 Ensembl QA Adding note to check for joiner link to ensGene
24 October 2017
- 17:5117:51, 24 October 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Re push any tables if needed after checking updateTimes
- 17:4917:49, 24 October 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Re push any tables if needed after checking updateTimes
- 17:2317:23, 24 October 2017 diff hist +313 m Assembly QA Part 3 BETA Steps →Beta: Turn on GenBank updates add:commit:push
- 17:2317:23, 24 October 2017 diff hist −312 Assembly QA Part 3 BETA Steps →Beta: Check that your assembly is listed in align:dbs
23 October 2017
- 23:2723:27, 23 October 2017 diff hist −1,648 m Public Hub QA No edit summary
- 23:2623:26, 23 October 2017 diff hist +149 m Public Hub QA No edit summary
- 23:2423:24, 23 October 2017 diff hist −1 m Public Hub QA No edit summary
- 23:2423:24, 23 October 2017 diff hist +6 m Public Hub QA No edit summary
- 23:2323:23, 23 October 2017 diff hist +1,496 Public Hub QA Adding push request examples (revised) from BrianL's 10/12/17 email to QA
20 October 2017
- 23:4523:45, 20 October 2017 diff hist +607 m Assembly QA Part 4 RR Steps →RR: Check blat
- 23:4223:42, 20 October 2017 diff hist +136 m Assembly QA Part 3 BETA Steps →Beta: Check Tools: PCR
- 22:1822:18, 20 October 2017 diff hist +5 m Assembly QA Part 1 DEV Steps →Dev: isPCR test
- 22:1722:17, 20 October 2017 diff hist +524 m Assembly QA Part 1 DEV Steps →Dev: isPCR test
- 22:1322:13, 20 October 2017 diff hist +32 m Assembly QA Part 1 DEV Steps →Dev: isPCR test
- 22:1222:12, 20 October 2017 diff hist +982 m Assembly QA Part 1 DEV Steps →Dev: PCR test
19 October 2017
- 22:0922:09, 19 October 2017 diff hist +72 m Assembly QA Part 3 BETA Steps →Beta: Check that your assembly is listed in align:dbs
- 19:0119:01, 19 October 2017 diff hist +167 Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
14 September 2017
- 21:0021:00, 14 September 2017 diff hist +256 m GRC Patch Release →Drop old patch# tables from beta and from the rr
- 20:5420:54, 14 September 2017 diff hist +201 m GRC Patch Release →Push the track to the RR
- 18:2718:27, 14 September 2017 diff hist −204 m GRC Patch Release No edit summary
- 18:2018:20, 14 September 2017 diff hist +3,047 m GRC Patch Release No edit summary
- 18:1718:17, 14 September 2017 diff hist +146 m GRC Patch Release →Stage the track on beta
- 18:1618:16, 14 September 2017 diff hist +42 m GRC Patch Release →Stage the track on beta
7 September 2017
- 17:0517:05, 7 September 2017 diff hist +280 m GRC Patch Release →Stage the track on beta
- 00:0100:01, 7 September 2017 diff hist +97 GRC Patch Release →Stage the track on beta
6 September 2017
5 September 2017
- 21:1721:17, 5 September 2017 diff hist +249 m GRC Patch Release →Stage the track on beta
- 21:1521:15, 5 September 2017 diff hist +620 m GRC Patch Release →Stage the track on beta
1 September 2017
- 20:4620:46, 1 September 2017 diff hist +2 Assembly QA Part 3 BETA Steps →Beta: Push all tables for your assembly to beta
29 August 2017
- 19:0219:02, 29 August 2017 diff hist +253 SNP Track QA →AT RELEASE BE SURE TO:
11 August 2017
- 19:0619:06, 11 August 2017 diff hist +171 Assembly QA Part 2 Track Steps →Tracks: GenBank: Review GenBank QA steps
27 July 2017
- 21:3021:30, 27 July 2017 diff hist −116 m Main Page →Categories frequently used
24 July 2017
- 23:1923:19, 24 July 2017 diff hist −284 m Assembly QA Part 2 Track Steps →Tracks: pslCheck
19 July 2017
- 15:4115:41, 19 July 2017 diff hist +71 Main Page →Categories frequently used
- 15:3815:38, 19 July 2017 diff hist +31 Outdated instructions for releasing an assembly →Note: There is a newer version of these assembly QA & Release steps
25 May 2017
- 00:2000:20, 25 May 2017 diff hist +5 m Assembly QA Part 4 RR Steps →RR: Check that tables dont need to be re pushed
- 00:1900:19, 25 May 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Review chain/net track QA wiki
- 00:1700:17, 25 May 2017 diff hist +132 m Assembly QA Part 1 DEV Steps No edit summary
- 00:1600:16, 25 May 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Push request for downloads.html complete
- 00:1600:16, 25 May 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Push request - downloads.html
- 00:1500:15, 25 May 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: GenBank updates: make libs & run make
- 00:1500:15, 25 May 2017 diff hist −2 m Assembly QA Part 4 RR Steps →RR: Check chain/nets tracks for other assemblies
- 00:1400:14, 25 May 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Check genome-mysql
- 00:1300:13, 25 May 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Write release log text in Redmine & close
- 00:1300:13, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Push complete for static docs, image, and downloads ?
- 00:1200:12, 25 May 2017 diff hist +3 m Assembly QA Part 4 RR Steps →RR: FAQreleases.html- add, commit, git push
- 00:1200:12, 25 May 2017 diff hist −3 m Assembly QA Part 4 RR Steps →RR: Edit credits.html- add, commit, git push
- 00:1200:12, 25 May 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Edit indexNews.html and add:commit:push
- 00:1100:11, 25 May 2017 diff hist −4 m Assembly QA Part 4 RR Steps →RR: Edit indexNews.html - add, commit, git push
- 00:1100:11, 25 May 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Edit newsarch.html - add, commit, git push
- 00:1000:10, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Push request for downloads.html complete ?
- 00:1000:10, 25 May 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Edit downloads.html & add/commit/push
- 00:1000:10, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Turn on GenBank updates & add/commit/push
- 00:0900:09, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Push complete of gateway image ?
- 00:0900:09, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: copyHgcentral: liftOverChain (manual move)
- 00:0900:09, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test $db genomeClade beta rr
- 00:0900:09, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test $db defaultDb beta rr
- 00:0800:08, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test $db dbDb beta rr
- 00:0800:08, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test $db blatServers beta rr
- 00:0800:08, 25 May 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: hgCentral.dbDb set active equal to 1
- 00:0700:07, 25 May 2017 diff hist +12 m Assembly QA Part 4 RR Steps →RR: Autodump working ?
- 00:0700:07, 25 May 2017 diff hist −2 m Assembly QA Part 4 RR Steps →RR: Request push - start dump/autodump
- 00:0700:07, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Push complete for downloads ?
- 00:0700:07, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Push complete for currentGenomes symlink ?
- 00:0600:06, 25 May 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Add/update symlink htdocs-hgdownload /currentGenomes
- 00:0600:06, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Request push - hgdownload files
- 00:0500:05, 25 May 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Push done for chain/nets (other assemblies)?
- 00:0500:05, 25 May 2017 diff hist −2 m Assembly QA Part 4 RR Steps →RR: Request push - chain/nets for other assemblies
- 00:0400:04, 25 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Push complete for rsync database ?
- 00:0400:04, 25 May 2017 diff hist −2 m Assembly QA Part 4 RR Steps →RR: Request push - rsync complete database
- 00:0400:04, 25 May 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Check that tables dont need to be re-pushed
- 00:0300:03, 25 May 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Do chain/net quick qa or full qa
- 00:0300:03, 25 May 2017 diff hist +18 m Assembly QA Part 3 BETA Steps →Beta: Re-push any tables? check updateTimes
- 00:0300:03, 25 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Check Tools > PCR
- 00:0200:02, 25 May 2017 diff hist −2 m Assembly QA Part 3 BETA Steps →Beta: Check Tools > BLAT (protein)
- 00:0200:02, 25 May 2017 diff hist −2 m Assembly QA Part 3 BETA Steps →Beta: Check Tools > BLAT (dna)
- 00:0200:02, 25 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Check Tools > LiftOver
- 00:0100:01, 25 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Remove release tag for big: vcf track types */
- 00:0100:01, 25 May 2017 diff hist +2 m Assembly QA Part 3 BETA Steps →Beta: GenBank updates: make libs & run make
- 00:0100:01, 25 May 2017 diff hist −2 m Assembly QA Part 3 BETA Steps →Beta: Turn on GenBank updates & add/commit/push
- 00:0100:01, 25 May 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Do a make public in trackDb for chain/net organisms
- 00:0000:00, 25 May 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Do a make beta in trackDb for chain/net organisms
- 00:0000:00, 25 May 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Check release tags: compare dev and beta tracks side-by-side
- 00:0000:00, 25 May 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Admins/pushers completed gbdb push request
24 May 2017
- 23:5923:59, 24 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Double-check /gbdb files
- 23:5923:59, 24 May 2017 diff hist −2 m Assembly QA Part 3 BETA Steps →Beta: Check that your assembly is listed in align.dbs
- 23:5923:59, 24 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral: liftOverChain (manual move)
- 23:5823:58, 24 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral test $db genomeClade dev beta
- 23:5823:58, 24 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral test $db defaultDb dev beta
- 23:5823:58, 24 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral test $db dbDb dev beta
- 23:5823:58, 24 May 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: copyHgcentral test $db blatServers dev beta
- 23:5723:57, 24 May 2017 diff hist −1 m Assembly QA Part 2 Track Steps →Tracks: Note about big: vcf track type */
- 23:5723:57, 24 May 2017 diff hist 0 m Assembly QA Part 2 Track Steps →Tracks: Type-specific QA completed
- 23:5723:57, 24 May 2017 diff hist 0 m Assembly QA Part 2 Track Steps →Tracks: Do your tracks need other type-specific QA?
- 23:5623:56, 24 May 2017 diff hist −2 m Assembly QA Part 2 Track Steps →Tracks: Chain/Nets QA completed?
- 23:5523:55, 24 May 2017 diff hist 0 m Assembly QA Part 2 Track Steps →Tracks: Review Chain-Nets QA
- 23:5423:54, 24 May 2017 diff hist 0 m Assembly QA Part 2 Track Steps →Tracks: Review Chain/Nets QA
- 23:5423:54, 24 May 2017 diff hist −2 m Assembly QA Part 2 Track Steps →Tracks: Track Settings (hgTrackUi)
- 23:5323:53, 24 May 2017 diff hist −2 m Assembly QA Part 2 Track Steps →Tracks: qaGbTracks: Table Descriptions (view table schema)
- 23:5323:53, 24 May 2017 diff hist −2 m Assembly QA Part 2 Track Steps →Tracks: qaGbTracks: Chromosome coverage (countPerChrom)
- 23:5023:50, 24 May 2017 diff hist +11 m Assembly QA Part 1 DEV Steps →Dev: md5sum check with "2bitCompare $db"
- 23:4923:49, 24 May 2017 diff hist 0 m Assembly QA Part 1 DEV Steps →Dev: liftOver exists: old-to-new, new-to-old
- 23:4823:48, 24 May 2017 diff hist −2 m Assembly QA Part 1 DEV Steps →Redmine: Set the engineer as "watcher" if they are not the developer
- 23:4823:48, 24 May 2017 diff hist +1 m Assembly QA Part 1 DEV Steps →Redmine: Review "Redmine as PushQ" wiki
- 23:4223:42, 24 May 2017 diff hist −32 m Assembly QA Part 1 DEV Steps No edit summary
- 23:3523:35, 24 May 2017 diff hist −2 m Assembly QA Part 1 DEV Steps →Redmine: Set 'assignee' as yourself
- 02:0902:09, 24 May 2017 diff hist +156 m Assembly Release QA Steps No edit summary
- 02:0702:07, 24 May 2017 diff hist +52 m Assembly Release QA Steps →Introduction
- 02:0502:05, 24 May 2017 diff hist −5 m Assembly Release QA Steps →Introduction
- 02:0502:05, 24 May 2017 diff hist −9 m Assembly Release QA Steps No edit summary
- 02:0502:05, 24 May 2017 diff hist −96 m Assembly Release QA Steps No edit summary
- 02:0402:04, 24 May 2017 diff hist −130 m Assembly Release QA Steps No edit summary
- 02:0102:01, 24 May 2017 diff hist +1 m Assembly QA Part 4 RR Steps →RR: Next day: check release log
- 02:0002:00, 24 May 2017 diff hist −8 m Assembly QA Part 4 RR Steps No edit summary
- 01:5901:59, 24 May 2017 diff hist −1,172 m Assembly QA Part 4 RR Steps No edit summary
- 01:5801:58, 24 May 2017 diff hist −1,170 m Assembly QA Part 3 BETA Steps No edit summary
- 01:5801:58, 24 May 2017 diff hist −1,220 m Assembly QA Part 2 Track Steps No edit summary
- 01:5001:50, 24 May 2017 diff hist +38 m Assembly QA Part 1 DEV Steps →Setup: Create a Google spreadsheet checklist from a template
- 01:4901:49, 24 May 2017 diff hist +20 m Assembly QA Part 1 DEV Steps →Setup: Create a Google spreadsheet checklist from a template
- 01:4901:49, 24 May 2017 diff hist +481 m Assembly QA Part 1 DEV Steps →Setup: Create a Google spreadsheet checklist from a template
- 01:4801:48, 24 May 2017 diff hist −20 m Assembly QA Part 1 DEV Steps →Setup: Create a Google spreadsheet checklist from a template
- 01:4601:46, 24 May 2017 diff hist −5 m Assembly QA Part 1 DEV Steps No edit summary
- 01:4601:46, 24 May 2017 diff hist +3 Assembly QA Part 1 DEV Steps →Setup: Make a directory in your hive
- 01:4501:45, 24 May 2017 diff hist +101 m Assembly QA Part 1 DEV Steps →Setup: Create a Google spreadsheet checklist from a template
- 01:4301:43, 24 May 2017 diff hist −1,035 m Assembly QA Part 1 DEV Steps →Setup: Populate spreadsheet steps for dev
- 00:0700:07, 24 May 2017 diff hist +187 m Assembly QA Part 1 DEV Steps →Setup: Populate spreadsheet steps for dev
23 May 2017
- 23:4423:44, 23 May 2017 diff hist +173 m Assembly QA Part 1 DEV Steps →Setup: Populate spreadsheet steps for dev
- 23:4123:41, 23 May 2017 diff hist −43 m Assembly QA Part 4 RR Steps No edit summary
- 23:4123:41, 23 May 2017 diff hist −43 m Assembly QA Part 3 BETA Steps No edit summary
- 23:4023:40, 23 May 2017 diff hist −43 m Assembly QA Part 2 Track Steps No edit summary
- 23:4023:40, 23 May 2017 diff hist −43 m Assembly QA Part 1 DEV Steps No edit summary
- 23:2623:26, 23 May 2017 diff hist +2 m Assembly QA Part 1 DEV Steps →Redmine: Set Status to 'Reviewing'
- 23:2223:22, 23 May 2017 diff hist −5 m Outdated instructions for releasing an assembly No edit summary
- 23:2123:21, 23 May 2017 diff hist −1 m Outdated instructions for releasing an assembly No edit summary
- 23:2023:20, 23 May 2017 diff hist +3 m Outdated instructions for releasing an assembly No edit summary
- 23:1723:17, 23 May 2017 diff hist +272 m Outdated instructions for releasing an assembly Adding link to new assembly release wiki
- 23:1423:14, 23 May 2017 diff hist −43 m Assembly Release QA Steps No edit summary
- 23:1323:13, 23 May 2017 diff hist +143 m Main Page →Categories frequently used
22 May 2017
- 22:3922:39, 22 May 2017 diff hist +6 m Replacing old tables with new ones →Example
- 22:3922:39, 22 May 2017 diff hist +114 Replacing old tables with new ones Adding a RM example of removing a track
- 17:4817:48, 22 May 2017 diff hist −478 Assembly QA Part 2 Track Steps →Tracks: GenBank: email Braney a heads up
- 17:4717:47, 22 May 2017 diff hist +273 Assembly QA Part 2 Track Steps →Tracks: GenBank: doGenbankTests
- 16:2616:26, 22 May 2017 diff hist −85 m Assembly Release QA Steps No edit summary
16 May 2017
- 17:3917:39, 16 May 2017 diff hist +78 m Main Page →Categories frequently used
5 May 2017
- 23:0323:03, 5 May 2017 diff hist −107 m Assembly QA Part 2 Track Steps →Tracks: GenBank: Review GenBank QA steps
- 22:4422:44, 5 May 2017 diff hist −85 m Assembly QA Part 1 DEV Steps No edit summary
- 22:4422:44, 5 May 2017 diff hist −85 m Assembly QA Part 2 Track Steps No edit summary
- 22:4422:44, 5 May 2017 diff hist −85 m Assembly QA Part 3 BETA Steps No edit summary
- 22:4322:43, 5 May 2017 diff hist −85 m Assembly QA Part 4 RR Steps No edit summary
- 22:4122:41, 5 May 2017 diff hist +412 m Assembly QA Part 4 RR Steps →RR: Push request for downloads.html complete ?
- 22:3322:33, 5 May 2017 diff hist +125 Assembly QA Part 4 RR Steps →RR: Autodump working ?
- 22:3122:31, 5 May 2017 diff hist +115 m Assembly QA Part 4 RR Steps →RR: GenBank updates: check Genbank update times
- 17:4217:42, 5 May 2017 diff hist +263 m Assembly QA Part 4 RR Steps →RR: Next day: check release log
27 April 2017
- 17:4917:49, 27 April 2017 diff hist +84 m Main Page →Categories frequently used
24 April 2017
- 17:4117:41, 24 April 2017 diff hist +127 m Chains and Nets QA No edit summary
- 17:4017:40, 24 April 2017 diff hist +129 m Assembly QA Part 3 BETA Steps →Beta: Review chain/net track QA wiki
- 17:0217:02, 24 April 2017 diff hist +1 m Assembly QA Part 4 RR Steps No edit summary
- 01:2301:23, 24 April 2017 diff hist +108 m Assembly QA Part 4 RR Steps →RR: Push complete for currentGenomes symlink ?
- 01:2301:23, 24 April 2017 diff hist +110 m Assembly QA Part 4 RR Steps →RR: Request push of symlink for currentGenomes
- 01:2301:23, 24 April 2017 diff hist +108 m Assembly QA Part 4 RR Steps →RR: Add/update symlink htdocs-hgdownload /currentGenomes
22 April 2017
- 01:1101:11, 22 April 2017 diff hist +204 m Assembly QA Part 4 RR Steps →RR: Write release log text in Redmine & close
- 00:3000:30, 22 April 2017 diff hist +750 m Assembly QA Part 4 RR Steps →RR: Write release log text in Redmine & close
- 00:1100:11, 22 April 2017 diff hist +46 m Assembly QA Part 4 RR Steps →RR: FAQreleases.html- add, commit, git push
- 00:0500:05, 22 April 2017 diff hist +207 m Assembly QA Part 4 RR Steps →RR: Edit credits.html- add, commit, git push
21 April 2017
- 23:1723:17, 21 April 2017 diff hist +51 m Assembly QA Part 4 RR Steps →RR: Edit newsarch.html - add, commit, git push
- 23:1723:17, 21 April 2017 diff hist −51 m Assembly QA Part 4 RR Steps →RR: Edit indexNews.html - add, commit, git push
- 23:1623:16, 21 April 2017 diff hist +94 m Assembly QA Part 4 RR Steps No edit summary
- 22:5922:59, 21 April 2017 diff hist +148 m Assembly QA Part 4 RR Steps →RR: Push request - downloads.html
- 22:5922:59, 21 April 2017 diff hist −420 m Assembly QA Part 4 RR Steps →RR: Request push for static docs, and downloads.html
- 22:5622:56, 21 April 2017 diff hist +195 m Assembly QA Part 4 RR Steps →RR: Edit downloads.html
- 22:3622:36, 21 April 2017 diff hist +9 m Assembly QA Part 4 RR Steps →RR: Edit downloads.html
- 22:2822:28, 21 April 2017 diff hist +18 m Assembly QA Part 3 BETA Steps →Beta: Turn on GenBank updates
- 22:2822:28, 21 April 2017 diff hist +18 m Assembly QA Part 4 RR Steps →RR: Turn on GenBank updates
- 22:2622:26, 21 April 2017 diff hist +80 m Assembly QA Part 4 RR Steps →RR: Request push of symlink htdocs-hgdownload /currentGenomes
- 22:2322:23, 21 April 2017 diff hist +352 m Assembly QA Part 4 RR Steps →RR: Add/update symlink htdocs-hgdownload /currentGenomes
- 22:1322:13, 21 April 2017 diff hist +903 m Assembly QA Part 4 RR Steps →RR: Request push - hgdownload files
- 21:5821:58, 21 April 2017 diff hist +548 m Assembly QA Part 3 BETA Steps →Beta: Review chain/net track QA wiki
- 21:4721:47, 21 April 2017 diff hist −21 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Check default tracks
- 21:4621:46, 21 April 2017 diff hist +20 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Check default tracks
- 21:4521:45, 21 April 2017 diff hist 0 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Check default tracks
- 21:4521:45, 21 April 2017 diff hist +1,494 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Check default position
- 21:0221:02, 21 April 2017 diff hist +113 m Assembly QA Part 4 RR Steps →RR: Request push - start dump/autodump
- 21:0121:01, 21 April 2017 diff hist +67 m Assembly QA Part 4 RR Steps →RR: Autodump working ?
- 20:5920:59, 21 April 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Autodump working ?
- 20:5720:57, 21 April 2017 diff hist +91 m Assembly QA Part 4 RR Steps No edit summary
- 20:5220:52, 21 April 2017 diff hist +256 m Assembly QA Part 4 RR Steps →RR: QA everything on asia
- 20:5220:52, 21 April 2017 diff hist −254 m Assembly QA Part 4 RR Steps →RR: Check chain/nets tracks for other assemblies
- 20:5120:51, 21 April 2017 diff hist +2 m Assembly QA Part 4 RR Steps No edit summary
- 00:5700:57, 21 April 2017 diff hist +287 m Assembly QA Part 4 RR Steps →RR: Check all tracks on the RR
- 00:5600:56, 21 April 2017 diff hist −138 m Assembly QA Part 4 RR Steps →RR: Request push for image, static docs, and downloads.html
- 00:3100:31, 21 April 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Write Google Groups announcement
- 00:1600:16, 21 April 2017 diff hist −3 m Assembly QA Part 4 RR Steps →Beta: GenBank updates: make libs & run make
- 00:1600:16, 21 April 2017 diff hist −3 m Assembly QA Part 4 RR Steps →Beta: Turn on GenBank updates
- 00:1300:13, 21 April 2017 diff hist +1,146 m Assembly QA Part 4 RR Steps →RR: checkMetaData
- 00:0700:07, 21 April 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: copyHgcentral: liftOverChain (manual move)
- 00:0500:05, 21 April 2017 diff hist +323 m Assembly QA Part 4 RR Steps →RR: Review copyHgcentral steps
- 00:0400:04, 21 April 2017 diff hist −323 Assembly QA Part 4 RR Steps →RR: hgCentral.dbDb, set 'active=1'
20 April 2017
- 23:5823:58, 20 April 2017 diff hist −7 m Assembly QA Part 4 RR Steps →RR: checkMetaData
- 23:5823:58, 20 April 2017 diff hist +6 m Assembly QA Part 4 RR Steps →RR: checkMetaData
- 23:5723:57, 20 April 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test $db dbDb dev beta
- 23:5523:55, 20 April 2017 diff hist +148 m Assembly QA Part 4 RR Steps →RR: Push complete for static docs, image, and downloads ?
- 23:3823:38, 20 April 2017 diff hist +12 m Assembly QA Part 4 RR Steps →RR: Push image, static docs, and downloads.html
- 23:3823:38, 20 April 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Push Complete for static docs, image, and downloads ?
- 23:3723:37, 20 April 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Chain chain/nets tracks for other assemblies
- 23:3723:37, 20 April 2017 diff hist +108 m Assembly QA Part 4 RR Steps →RR: Push chain/nets for other assemblies
- 23:3623:36, 20 April 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Push Request: start dump/autodump
- 23:3623:36, 20 April 2017 diff hist +2 m Assembly QA Part 4 RR Steps →RR: Push Request: rsync complete database
- 23:3523:35, 20 April 2017 diff hist +10 m Assembly QA Part 4 RR Steps →RR: Push hgdownload files
- 23:3423:34, 20 April 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Push Complete for rsync database ?
- 23:3323:33, 20 April 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: Push Complete for downloads ?
- 23:3323:33, 20 April 2017 diff hist −51 m Assembly QA Part 4 RR Steps →RR: Push hgdownload files
- 23:2323:23, 20 April 2017 diff hist +447 m Assembly QA Part 4 RR Steps No edit summary
- 23:1823:18, 20 April 2017 diff hist +1,098 m Assembly QA Part 4 RR Steps No edit summary
- 23:0023:00, 20 April 2017 diff hist −546 m Assembly QA Part 4 RR Steps →RR: Push Downloads
- 22:4322:43, 20 April 2017 diff hist +55 m Assembly QA Part 4 RR Steps →RR: Push Request: rsync complete database
- 22:3822:38, 20 April 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RRs: Edit downloads.html
- 22:3722:37, 20 April 2017 diff hist +716 m Assembly QA Part 4 RR Steps →RR: Push Request: start dump/autodump
- 22:3022:30, 20 April 2017 diff hist +322 m Assembly QA Part 4 RR Steps No edit summary
- 22:2522:25, 20 April 2017 diff hist +495 m Assembly QA Part 4 RR Steps No edit summary
- 22:2322:23, 20 April 2017 diff hist +709 m Assembly QA Part 4 RR Steps →Beta: GenBank updates: make libs & run make
- 22:2122:21, 20 April 2017 diff hist +762 m Assembly QA Part 4 RR Steps No edit summary
- 22:1922:19, 20 April 2017 diff hist +52 m Assembly QA Part 4 RR Steps →RR: Check for Ensembl tracks
- 22:1822:18, 20 April 2017 diff hist +276 m Assembly QA Part 4 RR Steps →RR: Push Request: rsync complete database
- 22:1422:14, 20 April 2017 diff hist 0 m Assembly QA Part 4 RR Steps →RR: copyHgcentral test $db genomeClade beta RR
- 22:1422:14, 20 April 2017 diff hist −16 m Assembly QA Part 4 RR Steps No edit summary
- 22:1122:11, 20 April 2017 diff hist +203 m Assembly QA Part 4 RR Steps No edit summary
- 21:2921:29, 20 April 2017 diff hist +4,257 m Assembly QA Part 4 RR Steps No edit summary
- 21:2721:27, 20 April 2017 diff hist +669 m Assembly QA Part 4 RR Steps No edit summary
- 21:1521:15, 20 April 2017 diff hist +902 m Assembly QA Part 4 RR Steps No edit summary
- 21:1321:13, 20 April 2017 diff hist −650 m Assembly QA Part 3 BETA Steps →RR: Push chain/nets for other assemblies
- 21:1321:13, 20 April 2017 diff hist 0 m Assembly QA Part 4 RR Steps No edit summary
- 21:1221:12, 20 April 2017 diff hist −1,057 m Assembly QA Part 4 RR Steps →Tracks: Push Request
- 21:1121:11, 20 April 2017 diff hist −169 m Assembly QA Part 4 RR Steps →RR: Push chain/net tables for other orgs
- 21:0721:07, 20 April 2017 diff hist +525 m Assembly QA Part 3 BETA Steps No edit summary
- 20:5320:53, 20 April 2017 diff hist +153 m Assembly QA Part 3 BETA Steps →Beta: Push gbdb files
- 20:5120:51, 20 April 2017 diff hist +28 m Assembly QA Part 4 RR Steps No edit summary
- 20:4420:44, 20 April 2017 diff hist +66 m Assembly QA Part 3 BETA Steps →Beta: Push gbdb files
- 20:1920:19, 20 April 2017 diff hist −2 m Assembly QA Part 4 RR Steps →RR: Populate spreadsheet steps
- 20:1820:18, 20 April 2017 diff hist +1,173 m Assembly QA Part 4 RR Steps No edit summary
- 20:1620:16, 20 April 2017 diff hist −2 m Assembly QA Part 3 BETA Steps No edit summary
- 20:1520:15, 20 April 2017 diff hist +179 m Assembly QA Part 4 RR Steps No edit summary
- 20:1120:11, 20 April 2017 diff hist +129 m Assembly QA Part 3 BETA Steps →Beta: Re-push any tables? check updateTimes
- 20:1120:11, 20 April 2017 diff hist +167 m Assembly QA Part 4 RR Steps No edit summary
- 19:4619:46, 20 April 2017 diff hist +160 m Assembly QA Part 3 BETA Steps →Beta: Run chainNetTrio.csh script
- 17:5317:53, 20 April 2017 diff hist +1 m Assembly QA Part 3 BETA Steps →Beta: repush any tables? check updateTimes
- 17:5317:53, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: run chainNetTrio.csh script
- 17:5217:52, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: check Tools > PCR
- 17:5217:52, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: check Tools > BLAT (protein)
- 17:5217:52, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: check Tools > BLAT (dna)
- 17:5217:52, 20 April 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: check Tools > LiftOver
- 17:5217:52, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: remove release tag for big: vcf track types */
- 17:5117:51, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: check release tags: compare dev and beta tracks side-by-side
- 17:5117:51, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Check release tags: compare dev and beta tracks side-by-side
- 17:5117:51, 20 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Remove release tag for big: vcf track types */
- 17:4217:42, 20 April 2017 diff hist +138 m Assembly QA Part 4 RR Steps No edit summary
- 17:4117:41, 20 April 2017 diff hist +524 m Assembly QA Part 3 BETA Steps No edit summary
- 00:0500:05, 20 April 2017 diff hist +236 m Assembly QA Part 3 BETA Steps →Beta: GenBank updates: check Genbank update times
19 April 2017
- 23:5823:58, 19 April 2017 diff hist +160 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 23:5623:56, 19 April 2017 diff hist +3 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 23:5523:55, 19 April 2017 diff hist +179 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 23:5023:50, 19 April 2017 diff hist +64 m Assembly QA Part 3 BETA Steps →Beta: Turn on GenBank updates
- 23:4823:48, 19 April 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 23:4023:40, 19 April 2017 diff hist +60 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 23:3023:30, 19 April 2017 diff hist +145 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 01:2101:21, 19 April 2017 diff hist +203 m Assembly QA Part 3 BETA Steps →Beta: check Tools > BLAT
- 01:0901:09, 19 April 2017 diff hist +128 m Assembly QA Part 3 BETA Steps →Beta: Check release tags: compare dev and beta tracks side-by-side
- 00:2300:23, 19 April 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Beta: 5. copyHgcentral: liftOverChain (manual move)
- 00:2300:23, 19 April 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Beta: 4. copyHgcentral test $db genomeClade dev beta
- 00:2300:23, 19 April 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Beta: 3. copyHgcentral test $db defaultDb dev beta
- 00:2200:22, 19 April 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Beta: 2. copyHgcentral test $db dbDb dev beta
- 00:2200:22, 19 April 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Beta: 1. copyHgcentral test $db blatServers dev beta
- 00:2100:21, 19 April 2017 diff hist +193 m Assembly QA Part 3 BETA Steps →Beta: Check release tags: compare dev and beta tracks side-by-side
- 00:2100:21, 19 April 2017 diff hist −191 m Assembly QA Part 3 BETA Steps →Beta: Remove release tag for big: vcf track types */
- 00:1900:19, 19 April 2017 diff hist +97 m Assembly QA Part 3 BETA Steps →Beta: Push gbdb files
- 00:1300:13, 19 April 2017 diff hist +165 m Assembly QA Part 3 BETA Steps No edit summary
18 April 2017
- 23:5923:59, 18 April 2017 diff hist +48 m Assembly QA Part 3 BETA Steps →Beta: Double-check /gbdb files
- 23:3323:33, 18 April 2017 diff hist +48 m Assembly QA Part 3 BETA Steps →Beta: Double-check /gbdb files
- 23:1623:16, 18 April 2017 diff hist +1 m Assembly QA Part 3 BETA Steps →Beta: joinerCheck common keys
- 23:1323:13, 18 April 2017 diff hist +41 m Assembly QA Part 3 BETA Steps →Beta: joinerCheck table times
- 22:4222:42, 18 April 2017 diff hist +1 m Assembly QA Part 3 BETA Steps No edit summary
- 21:5421:54, 18 April 2017 diff hist +93 m Assembly QA Part 3 BETA Steps →Beta: GenBank updates: make libs & run make
- 21:5221:52, 18 April 2017 diff hist +221 Assembly QA Part 3 BETA Steps →Beta: Turn on GenBank updates
- 21:4521:45, 18 April 2017 diff hist +346 m Assembly QA Part 3 BETA Steps →Beta: 5. copyHgcentral: liftOverChain (manual move)
- 21:4421:44, 18 April 2017 diff hist −331 m Assembly QA Part 3 BETA Steps →Beta: checkMetaData
- 21:3321:33, 18 April 2017 diff hist +555 m Assembly QA Part 3 BETA Steps →Beta: 4. copyHgcentral test $db genomeClade dev beta
- 21:3121:31, 18 April 2017 diff hist +119 m Assembly QA Part 3 BETA Steps →Beta: 3. copyHgcentral test $db defaultDb dev beta
- 21:2921:29, 18 April 2017 diff hist +112 m Assembly QA Part 3 BETA Steps →Beta: 2. copyHgcentral test $db dbDb dev beta
- 21:2721:27, 18 April 2017 diff hist +20 m Assembly QA Part 3 BETA Steps →Beta: 1. copyHgcentral test $db blatServers dev beta
- 21:2721:27, 18 April 2017 diff hist +94 m Assembly QA Part 3 BETA Steps →Beta: 1. copyHgcentral test $db blatServers dev beta
- 21:2621:26, 18 April 2017 diff hist +141 m Assembly QA Part 3 BETA Steps →Beta: Review copyHgcentral steps
- 21:0121:01, 18 April 2017 diff hist +31 m Assembly QA Part 3 BETA Steps →Beta: 4. copyHgcentral test $db genomeClade dev beta
- 21:0121:01, 18 April 2017 diff hist +31 m Assembly QA Part 3 BETA Steps →Beta: 3. copyHgcentral test $db defaultDb dev beta
- 21:0021:00, 18 April 2017 diff hist +31 m Assembly QA Part 3 BETA Steps →Beta: 2. copyHgcentral test $db dbDb dev beta
- 21:0021:00, 18 April 2017 diff hist +32 m Assembly QA Part 3 BETA Steps →Beta: 1. copyHgcentral test $db blatServers dev beta
- 21:0021:00, 18 April 2017 diff hist −2 m Assembly QA Part 3 BETA Steps →Beta: Review copyHgcentral steps
- 20:3720:37, 18 April 2017 diff hist +136 m Assembly QA Part 3 BETA Steps →Beta: 4. copyHgcentral test $db genomeClade dev beta
- 20:3720:37, 18 April 2017 diff hist +132 m Assembly QA Part 3 BETA Steps →Beta: 3. copyHgcentral test $db defaultDb dev beta
- 20:3620:36, 18 April 2017 diff hist +122 m Assembly QA Part 3 BETA Steps →Beta: 2. copyHgcentral test $db dbDb dev beta
- 20:3620:36, 18 April 2017 diff hist +24 m Assembly QA Part 3 BETA Steps →Beta: 1. copyHgcentral test $db blatServers dev beta
- 20:3520:35, 18 April 2017 diff hist −6 m Assembly QA Part 3 BETA Steps →Beta: 1. copyHgcentral test $db blatServers dev beta
- 20:3520:35, 18 April 2017 diff hist +117 m Assembly QA Part 3 BETA Steps →Beta: 1. copyHgcentral test $db blatServers dev beta
- 20:3420:34, 18 April 2017 diff hist +616 m Assembly QA Part 3 BETA Steps →Beta: Review copyHgcentral steps
- 20:3120:31, 18 April 2017 diff hist +26 m Assembly QA Part 3 BETA Steps →Beta: Remove 'seq' and 'extFile' tables
- 20:3120:31, 18 April 2017 diff hist +20 m Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your HIVE table list
- 20:3020:30, 18 April 2017 diff hist +1 m Assembly QA Part 3 BETA Steps No edit summary
- 20:1720:17, 18 April 2017 diff hist +86 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 19:4619:46, 18 April 2017 diff hist +266 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 19:3719:37, 18 April 2017 diff hist +429 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 19:2919:29, 18 April 2017 diff hist +53 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 19:2719:27, 18 April 2017 diff hist +25 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 19:2719:27, 18 April 2017 diff hist +57 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 19:2519:25, 18 April 2017 diff hist +102 m Assembly QA Part 3 BETA Steps No edit summary
- 19:1819:18, 18 April 2017 diff hist +220 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 00:4900:49, 18 April 2017 diff hist +95 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 00:4300:43, 18 April 2017 diff hist +15 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 00:4200:42, 18 April 2017 diff hist +52 m Assembly QA Part 3 BETA Steps →Beta: Make clean table lists for pushing
- 00:3200:32, 18 April 2017 diff hist +478 m Assembly QA Part 3 BETA Steps →Beta: Make clean table list
- 00:2300:23, 18 April 2017 diff hist +165 m Assembly QA Part 3 BETA Steps →Beta: Compare cleanTableList with dev mySQL table list
- 00:0600:06, 18 April 2017 diff hist +329 m Assembly QA Part 3 BETA Steps →Beta: Remove 'seq' and 'extFile' tables
17 April 2017
- 23:5323:53, 17 April 2017 diff hist +32 m Assembly QA Part 3 BETA Steps →Beta: Remove 'seq' and 'extFile' tables
- 23:4723:47, 17 April 2017 diff hist −193 m Assembly QA Part 3 BETA Steps →Tracks: Remove release tag for big: vcf track types */
- 23:4623:46, 17 April 2017 diff hist −3 m Assembly QA Part 3 BETA Steps →Tracks: Remove release tag for big: vcf track types */
- 23:3523:35, 17 April 2017 diff hist −2 m Assembly QA Part 3 BETA Steps →Beta: check Tools > BLATr
- 23:3423:34, 17 April 2017 diff hist +342 m Assembly QA Part 3 BETA Steps →Beta: 5. copyHgcentral: liftOverChain (manual move)
- 23:3023:30, 17 April 2017 diff hist +205 m Assembly QA Part 3 BETA Steps →Beta: 5. copyHgcentral: liftOverChain (manual move)
- 23:2523:25, 17 April 2017 diff hist +1,423 m Assembly QA Part 3 BETA Steps →Beta: joinerCheck common keys
- 23:2223:22, 17 April 2017 diff hist +828 m Assembly QA Part 3 BETA Steps No edit summary
- 23:1923:19, 17 April 2017 diff hist −6 m Assembly QA Part 3 BETA Steps →Make sure no tables need to be repushed from hgwdev to hgwbeta
- 23:1423:14, 17 April 2017 diff hist +555 m Assembly QA Part 3 BETA Steps No edit summary
- 23:0523:05, 17 April 2017 diff hist +1,132 m Assembly QA Part 3 BETA Steps No edit summary
- 22:5522:55, 17 April 2017 diff hist +7 m Assembly QA Part 3 BETA Steps →liftOverChain
- 22:5322:53, 17 April 2017 diff hist −101 m Assembly QA Part 3 BETA Steps →Beta: 5. copyHgcentral: liftOverChain (manual move)
- 22:5022:50, 17 April 2017 diff hist +219 m Assembly QA Part 1 DEV Steps →Dev: Permissions check: downloads dir
- 22:4122:41, 17 April 2017 diff hist +1,948 m Assembly QA Part 1 DEV Steps →Dev: Permissions check: downloads dir
- 22:4022:40, 17 April 2017 diff hist −1,962 m Assembly QA Part 1 DEV Steps →Dev: Compare .2bits various locations: "2bitCompare $db"
- 22:3822:38, 17 April 2017 diff hist +11 m Assembly QA Part 1 DEV Steps →Dev: Compare the .2bit files in various locations
- 22:3322:33, 17 April 2017 diff hist +4 m Assembly QA Part 1 DEV Steps →Dev: Check Tools > LiftOver
- 22:2322:23, 17 April 2017 diff hist −2 m Assembly QA Part 1 DEV Steps →Dev: Compare chrom sizes
- 22:2322:23, 17 April 2017 diff hist +5 m Assembly QA Part 1 DEV Steps →Dev: Do a BLAT search (protein)
- 22:2222:22, 17 April 2017 diff hist 0 m Assembly QA Part 1 DEV Steps →Dev: Check Tools > LiftOver
- 22:2222:22, 17 April 2017 diff hist +7 m Assembly QA Part 1 DEV Steps →Dev: Check Tools > LiftOver
- 22:2122:21, 17 April 2017 diff hist −2 m Assembly QA Part 1 DEV Steps →Dev: Check Tools > LiftOver
- 22:2022:20, 17 April 2017 diff hist +2 m Assembly QA Part 1 DEV Steps →Dev: Check Tools > LiftOver
- 22:2022:20, 17 April 2017 diff hist 0 m Assembly QA Part 1 DEV Steps →Dev: Check Tools > LiftOver
- 22:2022:20, 17 April 2017 diff hist +242 m Assembly QA Part 1 DEV Steps →Dev: liftOver exists: other orgs
- 22:1622:16, 17 April 2017 diff hist +2 m Assembly QA Part 1 DEV Steps No edit summary
- 22:1422:14, 17 April 2017 diff hist +181 m Assembly QA Part 1 DEV Steps →Dev: Do a BLAT search (protein)
- 22:1022:10, 17 April 2017 diff hist −28 m Assembly QA Part 1 DEV Steps No edit summary
- 22:0822:08, 17 April 2017 diff hist +1,984 m Assembly QA Part 1 DEV Steps No edit summary
- 22:0322:03, 17 April 2017 diff hist −4 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 22:0322:03, 17 April 2017 diff hist +13 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 22:0222:02, 17 April 2017 diff hist +1,531 m Assembly QA Part 3 BETA Steps No edit summary
- 21:4421:44, 17 April 2017 diff hist +1 m Assembly QA Part 3 BETA Steps No edit summary
15 April 2017
- 00:2300:23, 15 April 2017 diff hist +671 m Assembly QA Part 3 BETA Steps No edit summary
- 00:1300:13, 15 April 2017 diff hist +158 m Assembly QA Part 3 BETA Steps No edit summary
- 00:0100:01, 15 April 2017 diff hist −429 m Assembly QA Part 3 BETA Steps →Beta: Do a 'make public' in trackDb for chain/net organisms
- 00:0000:00, 15 April 2017 diff hist −10 m Assembly QA Part 3 BETA Steps →Beta: Do a 'make public' in trackDb for chain/net organisms
- 00:0000:00, 15 April 2017 diff hist +106 m Assembly QA Part 3 BETA Steps →Beta: Do a 'make beta' in trackDb for chain/net organisms
14 April 2017
- 23:5323:53, 14 April 2017 diff hist +1,431 m Assembly QA Part 3 BETA Steps No edit summary
- 23:4323:43, 14 April 2017 diff hist +82 m Assembly QA Part 3 BETA Steps →Beta: Push all tables to beta
- 23:4223:42, 14 April 2017 diff hist −1 m Assembly QA Part 3 BETA Steps →Beta: Make clean table list
- 23:4223:42, 14 April 2017 diff hist 0 m Assembly QA Part 3 BETA Steps →Beta: Make clean table list
- 23:4023:40, 14 April 2017 diff hist +863 m Assembly QA Part 3 BETA Steps No edit summary
- 23:2223:22, 14 April 2017 diff hist +212 m Assembly QA Part 1 DEV Steps →Setup: Make a directory in your hive
- 23:2223:22, 14 April 2017 diff hist −293 m Assembly QA Part 1 DEV Steps →Setup: Getting started in hive
- 23:1723:17, 14 April 2017 diff hist +12 m Assembly QA Part 3 BETA Steps No edit summary
- 23:0423:04, 14 April 2017 diff hist +36 m Assembly QA Part 3 BETA Steps →Tracks: Populate spreadsheet steps
- 23:0223:02, 14 April 2017 diff hist −2 m Assembly QA Part 3 BETA Steps No edit summary
- 23:0123:01, 14 April 2017 diff hist +1,129 m Assembly QA Part 3 BETA Steps No edit summary
- 18:3218:32, 14 April 2017 diff hist +107 m Assembly QA Part 2 Track Steps No edit summary
- 18:2818:28, 14 April 2017 diff hist +5 m Assembly QA Part 2 Track Steps No edit summary
12 April 2017
- 00:1500:15, 12 April 2017 diff hist +117 Assembly QA Part 4 RR Steps No edit summary
- 00:1500:15, 12 April 2017 diff hist +111 m Assembly QA Part 3 BETA Steps →Tracks: Push to hgwbeta
- 00:1100:11, 12 April 2017 diff hist +330 m Assembly QA Part 2 Track Steps →Tracks: Review Chain/Nets QA
- 00:0900:09, 12 April 2017 diff hist +15 m Assembly QA Part 2 Track Steps →Tracks: Review Chain/Nets QA
- 00:0800:08, 12 April 2017 diff hist +250 m Assembly QA Part 2 Track Steps →Tracks: GenBank: doGenbankTests
- 00:0600:06, 12 April 2017 diff hist −25 m Assembly QA Part 2 Track Steps →Tracks: Do your tracks need other type-specific QA?
- 00:0400:04, 12 April 2017 diff hist +518 m Assembly QA Part 2 Track Steps No edit summary
11 April 2017
- 23:5423:54, 11 April 2017 diff hist −6 m Assembly QA Part 2 Track Steps →Tracks: Check track data in Data Integrator
- 23:5323:53, 11 April 2017 diff hist +8 m Assembly QA Part 2 Track Steps →Tracks: Searching
- 23:5123:51, 11 April 2017 diff hist −162 m Assembly QA Part 2 Track Steps →Tracks: Ensembl gene track
- 23:4923:49, 11 April 2017 diff hist +1,871 m Assembly QA Part 4 RR Steps No edit summary
- 23:4823:48, 11 April 2017 diff hist −1,805 m Assembly QA Part 2 Track Steps →Tracks: Downloads
- 23:4623:46, 11 April 2017 diff hist +3 m Assembly QA Part 2 Track Steps →Tracks: Note about big: vcf track typep */
- 23:4623:46, 11 April 2017 diff hist +193 Assembly QA Part 3 BETA Steps No edit summary
- 23:4623:46, 11 April 2017 diff hist +186 m Assembly QA Part 2 Track Steps →Tracks: Track type-specific QAp
- 23:4323:43, 11 April 2017 diff hist +193 m Assembly QA Part 3 BETA Steps No edit summary
- 23:4323:43, 11 April 2017 diff hist −197 m Assembly QA Part 2 Track Steps →Tracks: Remove release tag for big: vcf track types */
- 23:4323:43, 11 April 2017 diff hist +567 m Assembly QA Part 3 BETA Steps No edit summary
- 23:4223:42, 11 April 2017 diff hist +1,495 m Assembly QA Part 4 RR Steps No edit summary
- 23:4223:42, 11 April 2017 diff hist −569 m Assembly QA Part 2 Track Steps →Tracks: Make Public
- 23:4223:42, 11 April 2017 diff hist −450 m Assembly QA Part 2 Track Steps →Tracks: Validate on the RR
- 23:4123:41, 11 April 2017 diff hist −1,057 m Assembly QA Part 2 Track Steps →Tracks: Push Request