User contributions for Chmalee

1 December 2023

• 20:3920:39, 1 December 2023 diff hist +5‎ m CGI Build Process ‎ →‎Final Build Wrap-up: Change name of gbib/gbic push script

13 November 2023

• 21:2421:24, 13 November 2023 diff hist +75‎ CGI Build Process ‎ →‎Optionally Check TrackDb
• 21:2321:23, 13 November 2023 diff hist +22‎ CGI Build Process ‎ →‎Optionally Check TrackDb
• 20:4820:48, 13 November 2023 diff hist +39‎ CGI Build Process ‎ →‎Final Build : Day 15
• 20:4420:44, 13 November 2023 diff hist +397‎ CGI Build Process ‎ →‎Final Build : Day 15: Add steps for checking trackDb build successful

7 July 2023

• 18:4818:48, 7 July 2023 diff hist +3‎ m Demo sandbox ‎ →‎Claimed sandbox table current

25 April 2023

• 16:5116:51, 25 April 2023 diff hist +582‎ CGI Build Process ‎ →‎Update kent-core
• 16:3616:36, 25 April 2023 diff hist +39‎ CGI Build Process ‎ →‎Update kent-core
• 15:3815:38, 25 April 2023 diff hist +26‎ CGI Build Process ‎ →‎Update kent-core

13 April 2023

• 20:1820:18, 13 April 2023 diff hist −1,068‎ m CGI Build Process ‎ →‎Final Build Wrap-up: Add new script to push the gbib and gbic files

23 January 2023

• 21:2721:27, 23 January 2023 diff hist +277‎ m Cell Browser Release Process ‎ →‎Setting Up the Environment for the Build

13 May 2022

• 22:4122:41, 13 May 2022 diff hist −2‎ Cell Browser Release Process ‎ →‎Setting Up the Environment for the Build
• 22:3922:39, 13 May 2022 diff hist +510‎ Cell Browser Release Process ‎ →‎Setting Up the Environment for the Build
• 22:3322:33, 13 May 2022 diff hist +6‎ Cell Browser Release Process ‎ →‎Setting Up the Environment for the Build
• 22:3322:33, 13 May 2022 diff hist +487‎ Cell Browser Release Process ‎ →‎Setting Up the Environment for the Build
• 22:2922:29, 13 May 2022 diff hist +59‎ Cell Browser Release Process ‎ →‎Setting Up the Environment for the Build
• 22:2922:29, 13 May 2022 diff hist +139‎ m Cell Browser Release Process ‎ →‎Setting Up the Environment for the Build

14 February 2022

• 18:1818:18, 14 February 2022 diff hist 0‎ m CGI Build Process ‎ →‎Generate the code summaries and review pairings: Swap Ann for Clay
• 18:1718:17, 14 February 2022 diff hist +1‎ m CGI Build Process ‎ →‎Generate review pairings: Swap Ann for Clay
• 18:1718:17, 14 February 2022 diff hist +1‎ m CGI Build Process ‎ →‎Generate review pairings: Swap Ann for Clay

3 May 2021

• 20:4720:47, 3 May 2021 diff hist +3‎ CGI Build Process ‎ →‎Genome Browser in a Box

2 March 2021

• 01:2001:20, 2 March 2021 diff hist +103‎ CGI Build Process ‎ →‎Genome Browser in a Box: Note additional "notSelf" update needed that gbibCoreUpdateBeta is performed

1 March 2021

• 20:3320:33, 1 March 2021 diff hist +48‎ CGI Build Process ‎ →‎Genome Browser in a Box: Adding note to update the update script before running the cgi update
• 17:4817:48, 1 March 2021 diff hist +13‎ CGI Build Process ‎ →‎Genome Browser in a Box: Clearly separating old style script gbib update procedure from current manual steps

16 October 2020

• 17:2817:28, 16 October 2020 diff hist +2,004‎ N Related Tracks ‎ Creating Page about relatedTracks section of hgc/hgTrackUi current

2 October 2020

• 18:0118:01, 2 October 2020 diff hist +597‎ Otto Tracks ‎ →‎Overview

22 September 2020

• 15:3915:39, 22 September 2020 diff hist +1,069‎ Otto Tracks ‎ Add section on bigBed otto tracks

16 April 2020

• 15:2515:25, 16 April 2020 diff hist −12‎ Demo sandbox ‎No edit summary

1 February 2019

• 19:4019:40, 1 February 2019 diff hist +25‎ GBiC Testing ‎No edit summary

19 March 2018

• 20:2520:25, 19 March 2018 diff hist +2,347‎ Installing and testing previous CGI versions ‎ Adding some formatting and information about TrackCheck
• 17:5717:57, 19 March 2018 diff hist +2,269‎ N Installing and testing previous CGI versions ‎ Running a VM with old source code

17 January 2018

• 16:5116:51, 17 January 2018 diff hist +94‎ m Push Shepherd Responsibilities ‎ →‎Push to rest of the RR, hgwbeta-public, and euronode: Adding section about checking each rr machine individually

7 December 2017

• 21:5721:57, 7 December 2017 diff hist −9‎ m Push Shepherd Responsibilities ‎ →‎tableDescriptions
• 21:5721:57, 7 December 2017 diff hist +10‎ m Push Shepherd Responsibilities ‎ →‎tableDescriptions: test edit after upgrade

5 December 2017

• 17:0017:00, 5 December 2017 diff hist +133‎ m Outdated instructions for releasing an assembly ‎ →‎Make sure no tables need to be repushed from hgwdev to hgwbeta: Adding awk for extracting tables needing to be repushed

15 November 2017

• 20:1020:10, 15 November 2017 diff hist +54‎ m GenBank QA ‎ →‎doGenbankTests: Don't worry about gbSanity anymore.
• 20:0920:09, 15 November 2017 diff hist −89‎ m Outdated instructions for releasing an assembly ‎ →‎Review all tracks in the sub-pushQ: Removing gbSanity check after Braney said not to do it anymore.

2 November 2017

• 17:1817:18, 2 November 2017 diff hist +5‎ m Outdated instructions for releasing an assembly ‎ →‎Turn on GenBank updates
• 17:1617:16, 2 November 2017 diff hist +3‎ m Outdated instructions for releasing an assembly ‎ →‎Turn on genbank updates on the RR
• 17:1517:15, 2 November 2017 diff hist +74‎ m Outdated instructions for releasing an assembly ‎ →‎Check that Genbank is running on the RR: Genbank updates run once a week now on the rr

1 November 2017

• 20:5820:58, 1 November 2017 diff hist −281‎ m Outdated instructions for releasing an assembly ‎ →‎Turn on genbank updates on the RR: Braney says we don't need to tell him to reinstall binaries anymore.

25 October 2017

• 15:0815:08, 25 October 2017 diff hist +149‎ m Assembly QA Part 1 DEV Steps ‎ →‎Dev: Gateway: Organism image check: Adding steps to get a new image to show up on dev. They require the file to be committed or make will not pick them up.
• 15:0415:04, 25 October 2017 diff hist −19‎ m Assembly QA Part 1 DEV Steps ‎ →‎Dev: Gateway: Check default tracks: Fixing typo introduced while fixing last typo
• 15:0315:03, 25 October 2017 diff hist +91‎ m Assembly QA Part 1 DEV Steps ‎ →‎Dev: Gateway: Check default tracks: Fixing some typos in the default position editing trackDb steps
• 14:5914:59, 25 October 2017 diff hist +235‎ m Assembly QA Part 1 DEV Steps ‎ →‎Dev: Check that BLAT Server is running: Giving alternative to copyHgcentral program since it creates way too many temporary files
• 14:5614:56, 25 October 2017 diff hist +112‎ m Assembly QA Part 1 DEV Steps ‎ →‎Dev: Gateway: Check default position: Changing beta->dev and giving example mysql command to update default position

4 October 2017

• 22:4122:41, 4 October 2017 diff hist 0‎ m Big Bed/Wig QA ‎ →‎featureBits: woops said featureBits was faster when it's actually slower
• 22:4022:40, 4 October 2017 diff hist +820‎ m Big Bed/Wig QA ‎ →‎validateFiles: Adding example validateFiles loop for checking many bigBeds at once

3 October 2017

• 22:5022:50, 3 October 2017 diff hist +1,134‎ m Big Bed/Wig QA ‎ →‎featureBits: adding faster awk command in place of featureBits

25 September 2017

• 22:0922:09, 25 September 2017 diff hist +25‎ m Big Bed/Wig QA ‎ →‎positionalTblCheck and checkTableCoords
• 22:0822:08, 25 September 2017 diff hist +196‎ m Big Bed/Wig QA ‎ →‎positionalTblCheck: bedtoBigBed checks sorting and valid positions
• 22:0722:07, 25 September 2017 diff hist −744‎ m Big Bed/Wig QA ‎ →‎checkTableCoords: Removing checkTableCoords section
• 20:4120:41, 25 September 2017 diff hist +26‎ m Crispr QA ‎ Adding this page to browser qa page
• 19:2219:22, 25 September 2017 diff hist +3,493‎ Big Bed/Wig QA ‎ →‎QA-ing bigBed/bigWig tracks: Adding notes about getting some bed statistics to replicate standard QA

22 September 2017

• 21:1021:10, 22 September 2017 diff hist +357‎ m New track checklist ‎ →‎FeatureBits and Gaps: woops forgot loop for more than one bed file
• 21:0921:09, 22 September 2017 diff hist +580‎ m New track checklist ‎ →‎FeatureBits and Gaps: Adding some featureBits caveats

1 September 2017

• 00:0300:03, 1 September 2017 diff hist +139‎ m Crispr QA ‎ →‎Special QA notes

31 August 2017

• 23:4323:43, 31 August 2017 diff hist +16‎ m New track checklist ‎ →‎Track type-specific QA: Adding link to crispr qa page
• 23:4123:41, 31 August 2017 diff hist 0‎ Crispr QA ‎ →‎Special QA notes
• 23:4023:40, 31 August 2017 diff hist −1‎ Crispr QA ‎ →‎Special notes about normal QA checks
• 23:3323:33, 31 August 2017 diff hist +3‎ Crispr QA ‎ →‎Special notes about normal QA checks
• 23:3323:33, 31 August 2017 diff hist +67‎ m Crispr QA ‎ →‎Special notes about normal QA checks
• 23:3223:32, 31 August 2017 diff hist +5,170‎ N Crispr QA ‎ First pass at Crispr track QA page

25 August 2017

• 18:0318:03, 25 August 2017 diff hist +4‎ m Monitoring Tasks ‎No edit summary

21 July 2017

• 18:3618:36, 21 July 2017 diff hist +16‎ m Public Hub QA ‎ →‎1) Rebuild and push hub search files and tables
• 18:1818:18, 21 July 2017 diff hist +393‎ Public Hub QA ‎ →‎1) Rebuild and push hub search files and tables: Updating hub push mechanism, now a 3 part push process instead of just from dev to beta.

22 June 2017

• 20:4620:46, 22 June 2017 diff hist +446‎ Public Hub QA ‎ separating beta and rr steps for search files/table
• 20:0020:00, 22 June 2017 diff hist +88‎ Public Hub QA ‎ →‎Push to the RR: updating trash directories for hub searching

21 June 2017

• 23:0323:03, 21 June 2017 diff hist +264‎ Public Hub QA ‎ →‎Push to the RR: Updating steps for pushing hub search after new procedure. Please note that hgwbeta udcCache location has not been finalized as of this edit.

24 May 2017

• 22:0422:04, 24 May 2017 diff hist −1‎ m Assembly QA Part 4 RR Steps ‎ →‎RR: Check that tables don't need to be re-pushed: edit for qa presentation

17 May 2017

• 23:2223:22, 17 May 2017 diff hist +108‎ m CGI Testing ‎ →‎hgHubConnect: Adding note about testing hub disconnect button, which acts up from time to time

17 April 2017

• 16:3516:35, 17 April 2017 diff hist −153‎ m Static Page Protocol ‎ →‎Unique markdown format files: gbic.html is up to date now so removing sentence about divergence.

30 March 2017

• 21:4421:44, 30 March 2017 diff hist +2,939‎ All.joiner problem ‎ Adding method for getting around this bug current

30 January 2017

• 21:2621:26, 30 January 2017 diff hist +153‎ m Conservation Track QA ‎ →‎Check one maf file: Adding command to search gzipped files for multiple species

20 January 2017

• 22:3522:35, 20 January 2017 diff hist +48‎ m GBiC Testing ‎ →‎Installing and Uninstalling a VM: More notes about editing vagrantfile and restarting
• 22:3122:31, 20 January 2017 diff hist +128‎ m GBiC Testing ‎ →‎Installing and Uninstalling a VM: Adding a note about restarting vm after making a change to the vagrantfile
• 17:5617:56, 20 January 2017 diff hist +227‎ m GBiC Testing ‎ Some minor changes suggested by Cath
• 17:3717:37, 20 January 2017 diff hist +5‎ m GBiC Testing ‎ →‎Testing the GBiC Script: Adding sudo before initial install command
• 17:3617:36, 20 January 2017 diff hist −85‎ m GBiC Testing ‎ →‎Testing the GBiC Script: Removing location of mirror script.

8 December 2016

• 17:3317:33, 8 December 2016 diff hist +193‎ m GBiB Testing ‎ →‎Official GBiB Tester: Woops wrong link to local hub

6 December 2016

• 21:2821:28, 6 December 2016 diff hist +987‎ m Public Hub QA ‎ →‎Wrangling Public Hub: Explicitly providing directions to add hubs to the hgwdev hubPublic table.
• 21:2321:23, 6 December 2016 diff hist +165‎ m Public Hub QA ‎ →‎Wrangling Public Hub

3 November 2016

• 18:3618:36, 3 November 2016 diff hist +691‎ New track checklist ‎ →‎Chromosome coverage: Adding info about the pr command for printing two table counts side by side

26 October 2016

• 14:5714:57, 26 October 2016 diff hist 0‎ m Conservation Track QA ‎ →‎Pushing to the RR: minor grammar

19 October 2016

• 20:3820:38, 19 October 2016 diff hist −1‎ GBiB Testing ‎ →‎Official GBiB Tester
• 20:3720:37, 19 October 2016 diff hist +320‎ GBiB Testing ‎ →‎Official GBiB Tester: Changing order of some hub steps and being explicit about testing the shared folder function

14 October 2016

• 20:3720:37, 14 October 2016 diff hist +164‎ m Outdated instructions for releasing an assembly ‎ →‎Stage assembly on Round Robin

11 October 2016

• 17:2417:24, 11 October 2016 diff hist +161‎ m New track checklist ‎ →‎Push to hgwbeta
• 17:0417:04, 11 October 2016 diff hist +18‎ m New track checklist ‎ →‎Push Request

5 October 2016

• 19:1119:11, 5 October 2016 diff hist +149‎ m New track checklist ‎ →‎Push to hgwbeta

23 September 2016

• 17:0517:05, 23 September 2016 diff hist +347‎ Outdated instructions for releasing an assembly ‎ →‎Read and verify READMEs

22 September 2016

• 19:5919:59, 22 September 2016 diff hist +285‎ Outdated instructions for releasing an assembly ‎ →‎joinerCheck

21 September 2016

• 16:1716:17, 21 September 2016 diff hist +134‎ CGI Testing ‎ →‎main page testing

15 September 2016

• 15:2115:21, 15 September 2016 diff hist +11‎ All.joiner problem ‎No edit summary
• 15:2015:20, 15 September 2016 diff hist +1,056‎ All.joiner problem ‎No edit summary

22 July 2016

• 22:5622:56, 22 July 2016 diff hist +10,668‎ N GBiC Testing ‎ Created GBiC test page

20 June 2016

• 22:1822:18, 20 June 2016 diff hist +65‎ m QAing UCSC Genes ‎ →‎Updating instructions for checking blatServer is using the correct two bit file

18 March 2016

• 22:3722:37, 18 March 2016 diff hist +55‎ m GenomeCloud ‎ Breaking page into sections current
• 22:3422:34, 18 March 2016 diff hist +124‎ m GenomeCloud ‎ Starting volume section
• 22:0722:07, 18 March 2016 diff hist +14‎ m GenomeCloud ‎ testing edit