User contributions for Daniel

28 October 2022

• 23:5023:50, 28 October 2022 diff hist −89‎ Public Hub QA ‎ →‎Uncommon situation: Changing the URL in an Existing Public Hub: Updating path to public location

21 October 2022

• 18:4818:48, 21 October 2022 diff hist −8‎ Otto Tracks ‎ →‎Structure of a bigBed otto pipeline: Typo fix current
• 18:0718:07, 21 October 2022 diff hist +34‎ New track checklist ‎ →‎Push Requests (Data via email; TrackDb via QA script)
• 18:0118:01, 21 October 2022 diff hist 0‎ New track checklist ‎ →‎Push Requests (Data via email TrackDb; via QA script)
• 17:5917:59, 21 October 2022 diff hist +10‎ New track checklist ‎ →‎Push Requests (Data THEN TrackDb n Friends)

7 September 2022

• 21:1021:10, 7 September 2022 diff hist +7‎ Public Hub QA ‎ →‎Uncommon situation: Changing the URL in an Existing Public Hub: Changing path

12 April 2022

• 21:4121:41, 12 April 2022 diff hist −1‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: copyHgcentral: liftOverChain: manual move: Fixing Someone else's Typo current

11 April 2022

• 20:2920:29, 11 April 2022 diff hist +80‎ Public Hub QA ‎ →‎Uncommon situation: Changing the URL in an Existing Public Hub, updating hubStatus table

6 April 2022

• 17:3117:31, 6 April 2022 diff hist −102‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: copyHgcentral: liftOverChain: manual move: Removing Duplicate row

24 March 2022

• 20:3620:36, 24 March 2022 diff hist +2,104‎ Public Hub QA ‎ Moving/ Doc'ing Hub Public Coordinator section

15 March 2022

• 23:1123:11, 15 March 2022 diff hist +515‎ Building GenArk genomes ‎ →‎Post runBuild steps: Filling in missing details and adding info for genArk build

24 January 2022

• 22:1322:13, 24 January 2022 diff hist +411‎ LinkOut from NCBI ‎ Adding notes from email current

6 December 2021

• 22:0722:07, 6 December 2021 diff hist +272‎ New track checklist ‎ →‎Announce on indexNews, newsArch, Genome-announce, FB, Twitter: Adding View user session suggestion.

15 September 2021

• 00:2100:21, 15 September 2021 diff hist +18‎ Public Hub QA ‎ →‎=Add your hubUrl and email to auto-mailer
• 00:1900:19, 15 September 2021 diff hist +371‎ Public Hub QA ‎ →‎Post-RR release: Adding notes on hubPublicMailStatus

17 August 2021

• 18:3318:33, 17 August 2021 diff hist +2‎ Public Hub QA ‎ →‎Post-RR release (Depreciated mid-2021): Clarification of hubSearchText
• 18:3118:31, 17 August 2021 diff hist +186‎ Public Hub QA ‎ →‎Post-RR release: Updating auto hubSearchText process
• 18:2918:29, 17 August 2021 diff hist −38‎ Public Hub QA ‎ →‎Automation Script: Updates regarding new hubSearchText process

16 July 2021

• 20:5620:56, 16 July 2021 diff hist −16‎ New track checklist ‎ →‎Push to hgwbeta

2 July 2021

• 18:5518:55, 2 July 2021 diff hist +223‎ N System Architecture Map ‎ Creating Machine Map page
• 18:5518:55, 2 July 2021 diff hist 0‎ N File:GBSysArchMapF2.png ‎No edit summary current

22 June 2021

• 20:3020:30, 22 June 2021 diff hist +148‎ Push Shepherd Responsibilities ‎ →‎Day of Push: Adding missing step

2 June 2021

• 22:4722:47, 2 June 2021 diff hist −170‎ Push Shepherd Responsibilities ‎ →‎Set Up Notifications: Removed relic instruction No RM

17 March 2021

• 21:0021:00, 17 March 2021 diff hist +199‎ Public Hub QA ‎ →‎What to do if a Public Hub is down?: Adding link to new log of down hubs No RM

10 March 2021

• 19:5619:56, 10 March 2021 diff hist 0‎ m Public Hub QA ‎ →‎Post-RR release
• 19:5619:56, 10 March 2021 diff hist −2‎ m Public Hub QA ‎ →‎1) Rebuild and push hub search files and tables

2 March 2021

• 23:0223:02, 2 March 2021 diff hist −103‎ Public Hub QA ‎ →‎Automation Script: Updating info

16 February 2021

• 04:3404:34, 16 February 2021 diff hist −3‎ m New track checklist ‎ →‎Check Data in API

27 January 2021

• 00:4900:49, 27 January 2021 diff hist +95‎ m Conservation Track QA ‎No edit summary current

26 January 2021

• 19:5619:56, 26 January 2021 diff hist +222‎ Conservation Track QA ‎ →‎Make sure hgPal works with this set of tables: Clarifying hgPal

22 January 2021

• 21:4421:44, 22 January 2021 diff hist −1,036‎ New track checklist ‎ Removing outdated info on hgnfs1

11 January 2021

• 23:3923:39, 11 January 2021 diff hist +2‎ Public Hub QA ‎ →‎1) Rebuild and push hub search files and tables

5 January 2021

• 01:0901:09, 5 January 2021 diff hist +137‎ New track checklist ‎ Correcting the order of pennantIcons, previously incorrect No RM
• 00:5000:50, 5 January 2021 diff hist −108‎ New track checklist ‎ Changing path and adding Git Tracking to trackQaHelper No RM

22 December 2020

• 23:4623:46, 22 December 2020 diff hist +93‎ New track checklist ‎ Adding limitations to qaTrackHelper

12 December 2020

• 01:3901:39, 12 December 2020 diff hist +20‎ Public Hub QA ‎ Marking this section as uncommon situation.

20 November 2020

• 00:2100:21, 20 November 2020 diff hist +617‎ Public Hub QA ‎ →‎Public Hub QA Process: Adding note about automation script for adding or updating hubPublic

2 November 2020

• 23:5923:59, 2 November 2020 diff hist +82‎ New track checklist ‎ →‎Announce on indexNews, newsArch, Genome-announce, FB, Twitter: Adding copy-paste pennantIcon for new tracks #25869

14 October 2020

• 18:1618:16, 14 October 2020 diff hist +19‎ New track checklist ‎ →‎Push Request (Data and TrackDb n Friends): Note to push data first

28 September 2020

• 21:0321:03, 28 September 2020 diff hist −297‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Review blastTabs wiki: Delete non-applicable old QA step

8 September 2020

• 21:3021:30, 8 September 2020 diff hist 0‎ New track checklist ‎ →‎Label lengths

28 August 2020

• 23:3523:35, 28 August 2020 diff hist −4‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Write release log text in Redmine and close
• 23:3523:35, 28 August 2020 diff hist −4‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Write release log text in Redmine and close
• 23:3523:35, 28 August 2020 diff hist −7‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Write release log text in Redmine and close

27 August 2020

• 23:0723:07, 27 August 2020 diff hist +21‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Request push of gateway image
• 23:0023:00, 27 August 2020 diff hist −4‎ Assembly QA Part 4 RR Steps ‎ →‎RR: checkMetaData
• 22:1422:14, 27 August 2020 diff hist −108‎ Assembly QA Part 4 RR Steps ‎ Removing unnecessary chars that block copy pasting commands.
• 22:1322:13, 27 August 2020 diff hist +2‎ Assembly QA Part 4 RR Steps ‎ Reordering incorrect ordered assembly instructions
• 22:1022:10, 27 August 2020 diff hist −17‎ Assembly QA Part 4 RR Steps ‎ →‎RR: hgCentral:dbDb set active equal to 1
• 18:5418:54, 27 August 2020 diff hist −4‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check public genome-mysql
• 18:5118:51, 27 August 2020 diff hist +90‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Push gbdb files: Note to avoid * chars
• 18:4118:41, 27 August 2020 diff hist +91‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Push /gbdb files to the RR
• 17:4617:46, 27 August 2020 diff hist +73‎ Assembly QA Part 4 RR Steps ‎ Correcting gbdb push error
• 00:4200:42, 27 August 2020 diff hist +5‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Push /gbdb files to the RR

24 August 2020

• 23:4423:44, 24 August 2020 diff hist −79‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Push /gbdb files to the RR
• 23:3423:34, 24 August 2020 diff hist −24‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Do a make public in trackDb for your assembly
• 23:1823:18, 24 August 2020 diff hist −19‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: joinerCheck table times

22 August 2020

• 00:2800:28, 22 August 2020 diff hist −5‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: copyHgcentral: liftOverChain: manual move
• 00:2000:20, 22 August 2020 diff hist +84‎ Assembly QA Part 3 BETA Steps ‎No edit summary
• 00:1400:14, 22 August 2020 diff hist −47‎ Assembly QA Part 3 BETA Steps ‎ →‎OPTION 3: Use the bigPush.sh script, push tables in a file
• 00:1000:10, 22 August 2020 diff hist +55‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Push all tables for your assembly to beta

21 August 2020

• 22:4022:40, 21 August 2020 diff hist +19‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Compare assembly.push list with dev mySQL table list
• 22:3822:38, 21 August 2020 diff hist +71‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Remove certain tables from your assembly push list
• 22:0222:02, 21 August 2020 diff hist +54‎ Assembly QA Part 2 Track Steps ‎ →‎Tracks: The BIG QA Script: qaGbTracks
• 22:0122:01, 21 August 2020 diff hist +61‎ Assembly QA Part 2 Track Steps ‎ →‎Tracks: The BIG QA Script: qaGbTracks

29 July 2020

• 21:5821:58, 29 July 2020 diff hist −27‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Compare chrom sizes
• 21:5421:54, 29 July 2020 diff hist −50‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Compare chrom sizes
• 18:3518:35, 29 July 2020 diff hist +255‎ New track checklist ‎ Added note about trackQaHelper script noRM

21 July 2020

• 18:1218:12, 21 July 2020 diff hist +25‎ New track checklist ‎ →‎Check Data in API: Noting exceptions

16 July 2020

• 19:4419:44, 16 July 2020 diff hist +155‎ New track checklist ‎ →‎Push to hgwbeta: Adding command to supercede bigPush

9 July 2020

• 17:5617:56, 9 July 2020 diff hist −8‎ Monitoring Tasks ‎ Replacing Conner in the monitoring task to note outages No RM

26 June 2020

• 19:0519:05, 26 June 2020 diff hist +71‎ New track checklist ‎ →‎Ensure there is a Data Access Section

21 May 2020

• 17:5917:59, 21 May 2020 diff hist +238‎ New track checklist ‎ →‎Announce on indexNews, newsArch, Genome-announce, FB, Twitter
• 17:5717:57, 21 May 2020 diff hist +29‎ New track checklist ‎ →‎Push Request

20 May 2020

• 23:3623:36, 20 May 2020 diff hist +212‎ New track checklist ‎ →‎Announce on indexNews, newsArch, Genome-announce, FB, Twitter: Pennant icon info addition

7 May 2020

• 17:3917:39, 7 May 2020 diff hist +2‎ Usage Statistics ‎ →‎Using generateUsageStats.py
• 17:3817:38, 7 May 2020 diff hist +47‎ Usage Statistics ‎ →‎Using generateUsageStats.py: Adding full path for programs

15 April 2020

• 21:3921:39, 15 April 2020 diff hist +336‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Gateway: Check default position: Adding note about hgPbOk

1 April 2020

• 17:1017:10, 1 April 2020 diff hist +87‎ New track checklist ‎ →‎Downloads: Adding not about Table download files

6 March 2020

• 01:0201:02, 6 March 2020 diff hist +118‎ New track checklist ‎ →‎Push to hgwbeta: Adding gbdbPush #24825

6 February 2020

• 19:2919:29, 6 February 2020 diff hist +17‎ New track checklist ‎ →‎The BIG QA Script: qaGbTracks

20 January 2020

• 23:3423:34, 20 January 2020 diff hist +10‎ Public Hub QA ‎ →‎1) Add Hub to the hubPublic table on hgwdev
• 23:3123:31, 20 January 2020 diff hist 0‎ Public Hub QA ‎ →‎1) Add Hub to the hubPublic table on hgwdev

28 November 2019

• 00:5100:51, 28 November 2019 diff hist +561‎ Public Hub QA ‎ Adding section about users wanting to change their URL #24290

21 November 2019

• 22:4622:46, 21 November 2019 diff hist +162‎ Genome-preview machine ‎ →‎Updating Genome-Preview with pushDevToPreview: Adding note about my previewUpdate script

4 November 2019

• 23:0023:00, 4 November 2019 diff hist −1,561‎ Public Hub QA ‎ →‎1) Rebuild and push hub search files and tables: Removing section on udcCache and hubCrawl push with Chris's oversight #18870

24 October 2019

• 21:5121:51, 24 October 2019 diff hist +146‎ New track checklist ‎ →‎Announce on indexNews, newsArch, Genome-announce, FB, Twitter

4 September 2019

• 19:0419:04, 4 September 2019 diff hist +83‎ CGI Testing ‎ →‎TrackCheck: Adding note about TrackCheckLog alias.

29 August 2019

• 00:1600:16, 29 August 2019 diff hist +83‎ CGI Testing ‎ →‎main page testing: Updating some testing info

15 July 2019

• 18:0318:03, 15 July 2019 diff hist −275‎ New track checklist ‎ →‎joinerCheck: Adding noTimes option to the command, adding more info. #23792

11 July 2019

• 16:4716:47, 11 July 2019 diff hist +26‎ New track checklist ‎ →‎Track type-specific QA: Adding Gencode QA link

8 July 2019

• 22:2922:29, 8 July 2019 diff hist −8‎ New track checklist ‎ →‎Announce release on indexNews, newsArch, Genome-announce, FB, Twitter
• 22:2922:29, 8 July 2019 diff hist +513‎ New track checklist ‎ Adding note to announce track release.

17 June 2019

• 23:0423:04, 17 June 2019 diff hist −3‎ Public Hub QA ‎ Undo revision 5220 by Daniel (talk)
• 22:3722:37, 17 June 2019 diff hist +3‎ Public Hub QA ‎ →‎1) Rebuild and push hub search files and tables: Changing push template from hgnfs1 to hgwbeta after machine swap.

6 June 2019

• 00:0600:06, 6 June 2019 diff hist +7‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Edit credits:html and add:commit:push: Fixing path

5 June 2019

• 16:3516:35, 5 June 2019 diff hist +206‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check that autodump is working: Adding copy paste link

4 June 2019

• 23:5823:58, 4 June 2019 diff hist +11‎ Checking RR status through hgTracksRandom ‎ hgwbeta current
• 23:5723:57, 4 June 2019 diff hist −8‎ Old ENCODE QA ‎ hgwbeta current
• 23:5723:57, 4 June 2019 diff hist −28‎ Outdated instructions for releasing an assembly ‎ hgwbeta current
• 23:5623:56, 4 June 2019 diff hist −2‎ Ensembl QA ‎ hgwbeta current
• 23:5623:56, 4 June 2019 diff hist −14‎ GRC Patch Release ‎ hgwbeta current
• 23:5523:55, 4 June 2019 diff hist −4‎ UCSC Genes Staging Process ‎ hgwbeta
• 23:5523:55, 4 June 2019 diff hist −2‎ QAing Gencode Genes ‎ hgwbeta current
• 23:5423:54, 4 June 2019 diff hist −4‎ Email templates ‎ hgwbeta current
• 23:5423:54, 4 June 2019 diff hist −10‎ Requests for liftOver files ‎ hgwbeta
• 23:5323:53, 4 June 2019 diff hist −2‎ Assembly QA Part 4 RR Steps ‎ hgwbeta
• 23:5223:52, 4 June 2019 diff hist −28‎ Assembly QA Part 3 BETA Steps ‎ hgwbeta
• 23:5123:51, 4 June 2019 diff hist −4‎ HgTablesTest details ‎ hgwbeta
• 23:5123:51, 4 June 2019 diff hist −6‎ Monitoring Tasks Notes ‎ hgwbeta
• 23:5123:51, 4 June 2019 diff hist −6‎ PushQ new user ‎ hgwbeta current
• 23:5023:50, 4 June 2019 diff hist −8‎ Public Hub QA ‎ hgwbeta
• 23:5023:50, 4 June 2019 diff hist −2‎ QA scripts ‎ hgwbeta
• 23:4923:49, 4 June 2019 diff hist −2‎ QAing UCSC Genes ‎ hgwbeta
• 23:4923:49, 4 June 2019 diff hist −6‎ Conservation Track QA ‎ hgwbeta
• 23:4823:48, 4 June 2019 diff hist −20‎ Chains and Nets QA ‎ hgwbeta
• 23:4823:48, 4 June 2019 diff hist −4‎ New track checklist ‎ hgwbeta
• 23:4823:48, 4 June 2019 diff hist −2‎ Replacing old tables with new ones ‎ hgwbeta current
• 23:4723:47, 4 June 2019 diff hist −2‎ Pushing trackDb ‎ hgwbeta
• 23:4723:47, 4 June 2019 diff hist −2‎ ENCODE QA Checklist ‎ hgwbeta current
• 23:4623:46, 4 June 2019 diff hist −6‎ ENCODE QA ‎ hgwbeta current
• 23:4023:40, 4 June 2019 diff hist −2‎ CGI Testing ‎ mysqlbeta -> hgwbeta
• 23:4023:40, 4 June 2019 diff hist −4‎ BlastTabs ‎ Changing mysqlbeta to hgwbeta current
• 23:1223:12, 4 June 2019 diff hist −2‎ Assembly QA Part 4 RR Steps ‎ →‎RR: copyHgcentral: liftOverChain: manual move: Changing mysqlbeta to hgwbeta
• 19:0119:01, 4 June 2019 diff hist +46‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Request push: hgdownload files: Adding caution statement.

3 June 2019

• 16:5516:55, 3 June 2019 diff hist +33‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check that tables do not need to be pushed again: Adding what Table differences are okay.
• 16:1316:13, 3 June 2019 diff hist +115‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Re push any tables if needed after checking updateTimes: Adding list of tables on dev not on beta.

1 June 2019

• 00:0300:03, 1 June 2019 diff hist +334‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check that tables do not need to be pushed again: Correcting tables not to push list

31 May 2019

• 23:4723:47, 31 May 2019 diff hist −7‎ Chains and Nets QA ‎ →‎QAing on hgwbeta
• 21:4321:43, 31 May 2019 diff hist −3‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Double check gbdb files
• 21:1721:17, 31 May 2019 diff hist +2‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Push all tables to other assemblies to beta
• 21:0821:08, 31 May 2019 diff hist +12‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Compare assembly.push list with dev mySQL table list
• 21:0721:07, 31 May 2019 diff hist −8‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Compare assembly.push list with dev mySQL table list

22 May 2019

• 23:0523:05, 22 May 2019 diff hist +34‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: copyHgcentral test db defaultDb dev beta: Redundant if you did "all" above.
• 23:0423:04, 22 May 2019 diff hist +34‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: copyHgcentral test db dbDb dev beta: Redundant if you did "all" above.
• 23:0423:04, 22 May 2019 diff hist +34‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: copyHgcentral test db blatServers dev beta
• 23:0023:00, 22 May 2019 diff hist −25‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Review copyHgcentral steps: Copy Paste easier
• 22:5022:50, 22 May 2019 diff hist −12‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Remove certain tables from your assembly push list: Consistency
• 22:4522:45, 22 May 2019 diff hist −5‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Remove trackDb and hgFindSpec tables from your HIVE table list: Paste-able commands
• 22:4322:43, 22 May 2019 diff hist −4‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Copy redmine table list to hive
• 22:4222:42, 22 May 2019 diff hist −14‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Copy redmine table list to hive: Making commands paste-able

21 May 2019

• 23:4423:44, 21 May 2019 diff hist −90‎ Assembly QA Part 2 Track Steps ‎ Keeping variables consistent as $db
• 23:3723:37, 21 May 2019 diff hist +6‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: vsXXX: corruption: Improving command's pasteability
• 23:3023:30, 21 May 2019 diff hist +91‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: vsXXX: corruption: Adding common commands
• 23:2923:29, 21 May 2019 diff hist +67‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: vsXXX: check README: Making commands pasteable
• 23:2323:23, 21 May 2019 diff hist −6‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: vsXXX: check md5sum: Working commands
• 23:1523:15, 21 May 2019 diff hist −6‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: liftOver: check md5sum: Pasteable
• 23:1523:15, 21 May 2019 diff hist +14‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: database: check README: Making command paste-able
• 23:1323:13, 21 May 2019 diff hist −7‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: bigZips: check for corruption: Paste-able
• 23:1023:10, 21 May 2019 diff hist +2‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: bigZips: check md5sum
• 23:0823:08, 21 May 2019 diff hist −7‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: bigZips: check md5sum: Copy paste-able
• 23:0323:03, 21 May 2019 diff hist −9‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Run dbCheck: Making command copy paste-able
• 23:0223:02, 21 May 2019 diff hist −3‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Review downloads dir: changing silly command format
• 22:5222:52, 21 May 2019 diff hist +85‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Gateway: Organism image check: Noting where to change reference in html

20 May 2019

• 23:2023:20, 20 May 2019 diff hist +22‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Check that BLAT Server is running: Adding missing pre tags
• 23:1923:19, 20 May 2019 diff hist −25‎ Assembly QA Part 1 DEV Steps ‎ Changing assembly name and dev> tag to make the command more copyable.

13 May 2019

• 16:2916:29, 13 May 2019 diff hist −7‎ New track checklist ‎ →‎Validate on the RR: Wrong table mention

10 May 2019

• 23:5323:53, 10 May 2019 diff hist −10‎ New track checklist ‎ →‎Push Request: Changed it from trackDb_public and hgFindSpec to TrackDb and Friends
• 23:0223:02, 10 May 2019 diff hist +63‎ New track checklist ‎ →‎Downloads: Adding note about auto-filling downloads directory.
• 21:5621:56, 10 May 2019 diff hist −7‎ m New track checklist ‎ →‎Performance and Display

8 May 2019

• 18:4818:48, 8 May 2019 diff hist +41‎ New track checklist ‎ →‎Makedoc: Path correcting, typo removal

2 May 2019

• 17:3717:37, 2 May 2019 diff hist +103‎ HgTablesTest details ‎ →‎Ex error1: Adding note to ignore chainSelf errors more.

8 April 2019

• 16:4016:40, 8 April 2019 diff hist −117‎ New track checklist ‎ →‎Push to hgwbeta: ReOrganizing info, deleting redundancy

3 April 2019

• 23:3423:34, 3 April 2019 diff hist +64‎ New track checklist ‎ →‎joinerCheck: Adding note about big files.
• 17:1317:13, 3 April 2019 diff hist −621‎ New track checklist ‎ Deleting outdated instructions.

19 January 2019

• 01:3901:39, 19 January 2019 diff hist +322‎ Conservation Track QA ‎ →‎Precaution when pushing to the RR: Adding documentation

15 January 2019

• 21:3621:36, 15 January 2019 diff hist +129‎ Conservation Track QA ‎ →‎Final Steps: Adding path and more clear instructions.

11 January 2019

• 23:0723:07, 11 January 2019 diff hist +49‎ Conservation Track QA ‎ →‎Check multizway#wayFrames table: Short note about where to find species list

9 January 2019

• 19:0919:09, 9 January 2019 diff hist 0‎ m Conservation Track QA ‎ →‎Check multizway#wayFrames table
• 19:0819:08, 9 January 2019 diff hist +30‎ Conservation Track QA ‎ →‎Check multizway#wayFrames table: Adding path where none prev specified.
• 00:4200:42, 9 January 2019 diff hist +84‎ Conservation Track QA ‎ →‎Examine and possibly push records for the extFile and seq tables: Making commands consistent and copyable, using $db instead of hg38

5 December 2018

• 17:2317:23, 5 December 2018 diff hist +138‎ New track checklist ‎ →‎Release Log and URL: Adding convention to leave Release Log URL empty when multiple assemblies.

26 November 2018

• 17:1417:14, 26 November 2018 diff hist +23‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Post Google Groups announcement: Changing name

21 November 2018

• 19:3219:32, 21 November 2018 diff hist 0‎ Assembly QA Part 4 RR Steps ‎ Changing order to make 'edit static docs' before 'post release announcement'
• 18:4818:48, 21 November 2018 diff hist +147‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Post Google Groups announcement: Adding FB and Twitter announcement info.
• 01:3601:36, 21 November 2018 diff hist +157‎ Assembly QA Part 4 RR Steps ‎ →‎RR: FAQreleases.html and add, commit, git push: Better documentation
• 01:3401:34, 21 November 2018 diff hist +148‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Edit credits:html and add:commit:push: Static doc help
• 01:3301:33, 21 November 2018 diff hist +145‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Edit indexNews:html and add:commit:push: Clarifying Static protocols
• 01:3101:31, 21 November 2018 diff hist +149‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Edit newsarch:html and add:commit:git:push: Clarifying static doc protocols.

16 November 2018

• 18:3818:38, 16 November 2018 diff hist +7‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Turn on GenBank updates add:commit:push: Making IGNORE STEP message larger

14 November 2018

• 22:0422:04, 14 November 2018 diff hist +87‎ Assembly QA Part 4 RR Steps ‎ →‎RR: make your new assembly the default: Reducing two line command to one line, adding check work code.
• 21:5921:59, 14 November 2018 diff hist +1‎ Assembly QA Part 4 RR Steps ‎ →‎RR: hgCentral:dbDb set active equal to 1: Format edits
• 21:5821:58, 14 November 2018 diff hist +236‎ Assembly QA Part 4 RR Steps ‎ →‎RR: hgCentral:dbDb set active equal to 1: Adding code to do it in command line and check changes.

13 November 2018

• 23:3523:35, 13 November 2018 diff hist +93‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Check that your assembly is listed in hgwdev.dbs: Clarify replacement vs adding to the list.

10 November 2018

• 00:2300:23, 10 November 2018 diff hist +183‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Add or update symlink htdocs:hgdownload currentGenomes: Adding warning to avoid unlink error

8 November 2018

• 23:3023:30, 8 November 2018 diff hist −13‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Check that your assembly is listed in hgwdev.dbs: Changing this to the proper dbs file, as instructed by Braney
• 21:5921:59, 8 November 2018 diff hist +161‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Push gbdb files: Including grep shortcut

7 November 2018

• 22:0722:07, 7 November 2018 diff hist +99‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Review copyHgcentral steps: Highlighting shortcut.
• 21:5821:58, 7 November 2018 diff hist −70‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Push all tables for your assembly to beta: Restoring original
• 21:5621:56, 7 November 2018 diff hist +70‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Push all tables for your assembly to beta: Specifying which assembly
• 19:5819:58, 7 November 2018 diff hist −10‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Remove certain tables from your assembly push list: Making more pastable
• 19:3219:32, 7 November 2018 diff hist −7‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Make table PUSH lists for each assembly: Making it easier to copy and paste code
• 00:0600:06, 7 November 2018 diff hist +147‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Copy redmine table list to hive: Commenting on redundancy.

6 November 2018

• 19:0819:08, 6 November 2018 diff hist +28‎ Assembly QA Part 2 Track Steps ‎ →‎Tracks: The BIG QA Script: qaGbTracks: Adding note to ignore label length Errors.
• 00:5300:53, 6 November 2018 diff hist −17‎ Assembly QA Part 2 Track Steps ‎ →‎Tracks: The BIG QA Script: qaGbTracks: Removed cut command to reflect Chris's changes, hopefully gets changed further.

3 November 2018

• 00:2800:28, 3 November 2018 diff hist +1‎ m Assembly QA Part 1 DEV Steps ‎ →‎Dev: Review blastTabs wiki
• 00:2700:27, 3 November 2018 diff hist +75‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Review blastTabs wiki: Syncing info.
• 00:2200:22, 3 November 2018 diff hist +31‎ m Assembly QA Part 1 DEV Steps ‎ →‎Dev: Permissions check: downloads dir
• 00:1500:15, 3 November 2018 diff hist +341‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Permissions check: downloads dir: Making this check easier by grepping out the junk

29 October 2018

• 17:3517:35, 29 October 2018 diff hist +101‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: bigZips: check README: Minor edit to clarify test options

26 October 2018

• 23:5823:58, 26 October 2018 diff hist +366‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: bigZips: check README: Automated readme output
• 23:4823:48, 26 October 2018 diff hist +726‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Review notes and make temp dir for md5sum checks: Automated several md5sum check steps with one command.

24 October 2018

• 20:5420:54, 24 October 2018 diff hist +22‎ New track checklist ‎ →‎Validate on the RR: Clarified release log text expectations

23 October 2018

• 19:3019:30, 23 October 2018 diff hist +366‎ New track checklist ‎ →‎Push to hgwbeta

11 October 2018

• 21:5921:59, 11 October 2018 diff hist 0‎ m Post-Release-Checklist ‎ →‎Announce the release: Clarifying BG-announce style
• 21:5821:58, 11 October 2018 diff hist +107‎ Post-Release-Checklist ‎ →‎Announce the release: Clarifying BG-announce style

3 October 2018

• 21:3421:34, 3 October 2018 diff hist +4‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Check that your assembly is listed in align.dbs: Making server location more clear
• 19:0419:04, 3 October 2018 diff hist −18‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check Tools: BLAT: protein: Replacing incorrect instructions
• 19:0319:03, 3 October 2018 diff hist −18‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check Tools: BLAT: dna: Replacing incorrect instructions.
• 19:0219:02, 3 October 2018 diff hist −40‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check Tools: LiftOver: Replacing incorrect instructions.

2 October 2018

• 18:4318:43, 2 October 2018 diff hist +1‎ Assembly QA Part 4 RR Steps ‎ →‎RR: check symlink on ftp site: Formatting
• 18:4318:43, 2 October 2018 diff hist +43‎ Assembly QA Part 4 RR Steps ‎ →‎RR: check symlink on ftp site: Adding path
• 17:2617:26, 2 October 2018 diff hist +54‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Request push: rsync complete database: Adding missing announcement step
• 17:2517:25, 2 October 2018 diff hist +172‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Request push: chain nets for other assemblies: Adding missing make public steps
• 16:3016:30, 2 October 2018 diff hist +229‎ Assembly QA Part 4 RR Steps ‎ →‎RR: Check for correct row in hgFixed.trackVersion for Ensembl tracks

1 October 2018

• 16:3916:39, 1 October 2018 diff hist +102‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Do chain net quick qa or full qa: Making broken script comments more clear

28 September 2018

• 17:3317:33, 28 September 2018 diff hist +38‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: GenBank updates: check Genbank update times: Slight changes to make more clear.

27 September 2018

• 23:1623:16, 27 September 2018 diff hist +27‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Check release tags: compare dev and beta tracks side by side: Clarifying file types
• 19:3019:30, 27 September 2018 diff hist +69‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Check that your assembly is listed in align.dbs: Adding clarifying to proper location
• 19:2919:29, 27 September 2018 diff hist −321‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Do a make public in trackDb for chain net organisms: Remove duplicate code
• 19:0019:00, 27 September 2018 diff hist 0‎ m Assembly QA Part 3 BETA Steps ‎ →‎Beta: Do a make beta in trackDb for chain net organisms
• 18:5918:59, 27 September 2018 diff hist +6‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Do a make beta in trackDb for chain net organisms
• 18:5818:58, 27 September 2018 diff hist −70‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Do a make beta in trackDb for chain net organisms: Took out a broken link, clarified command

26 September 2018

• 18:3518:35, 26 September 2018 diff hist −50‎ Chains and Nets QA ‎ →‎Prior to QAing on hgwbeta: Pushing from hgwdev: Cut 3 commands into one command
• 17:0917:09, 26 September 2018 diff hist +80‎ Chains and Nets QA ‎ →‎Prior to QAing on hgwbeta: Pushing from hgwdev: Clarifying need to repeat process

25 September 2018

• 23:4523:45, 25 September 2018 diff hist −18‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: copyHgcentral test db blatServers dev beta: Making commands more clear
• 23:2023:20, 25 September 2018 diff hist −10‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Push all tables for your assembly to beta: Fix broken command
• 22:5222:52, 25 September 2018 diff hist +229‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Compare assembly.push list with dev mySQL table list: Clarifying output
• 22:1922:19, 25 September 2018 diff hist −78‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Remove certain tables from your assembly push list: fix broken command
• 19:0619:06, 25 September 2018 diff hist +142‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Remove certain tables from your assembly push list: fix broken command
• 17:4717:47, 25 September 2018 diff hist −6‎ Assembly QA Part 3 BETA Steps ‎ →‎Beta: Copy redmine table list to hive: Changed directory to proper place
• 17:4117:41, 25 September 2018 diff hist −15‎ Chains and Nets QA ‎ →‎Prior to QAing on hgwbeta: Pushing from hgwdev: Changing make beta from beta to make beta from dev

24 September 2018

• 22:4122:41, 24 September 2018 diff hist −9‎ m Assembly QA Part 2 Track Steps ‎ →‎Tracks: Performance and Display: Took out broken link comment
• 19:4719:47, 24 September 2018 diff hist −4‎ Training new Browser Engineers ‎ Links changed from .soe or .cse to .gi current
• 19:4619:46, 24 September 2018 diff hist +11‎ Track Hub Example ‎ Updated hgwdev links to .gi, one link broken current
• 19:4519:45, 24 September 2018 diff hist +5‎ Static content for new assemblies ‎ Updated hgwdev links to .gi, one link broken
• 19:4419:44, 24 September 2018 diff hist −7‎ Static Page Protocol ‎ Links changed from .soe or .cse to .gi
• 19:4219:42, 24 September 2018 diff hist −1‎ Static Page Protocol ‎ Link changed from .soe or .cse to .gi
• 19:4219:42, 24 September 2018 diff hist −1‎ Selenium python GBiB script ‎ Link changed from .soe or .cse to .gi current
• 19:4219:42, 24 September 2018 diff hist −1‎ RR Down: Sending Alert Messages about Genome Browser Being Offline ‎ Link changed from .soe or .cse to .gi
• 19:4119:41, 24 September 2018 diff hist −1‎ Public Hub QA ‎ Updated links to .gi, all links validated
• 19:4019:40, 24 September 2018 diff hist −1‎ Monitoring Tasks ‎ Updated links to .gi, all links validated
• 19:4019:40, 24 September 2018 diff hist −1‎ Make your own virtual space ‎ Links changed from .soe or .cse to .gi current
• 19:3919:39, 24 September 2018 diff hist −1‎ Gbib development ‎ Links changed from .soe or .cse to .gi
• 19:3819:38, 24 September 2018 diff hist −1‎ ENCODE QA ‎ Updated hgwdev links to .gi, all links validated
• 19:3719:37, 24 September 2018 diff hist −1‎ Custom Track Examples ‎ Updated hgwdev links to .gi, all links validated current
• 19:3419:34, 24 September 2018 diff hist −1‎ CGI Testing ‎ Links changed from .soe or .cse to .gi, links valid
• 19:1419:14, 24 September 2018 diff hist −124‎ Assembly QA Part 2 Track Steps ‎ Reverting test changes back.
• 19:0619:06, 24 September 2018 diff hist +114‎ Assembly QA Part 2 Track Steps ‎ →‎Tracks: Note about big vcf track type: Testing a wiki crawler

21 September 2018

• 22:4722:47, 21 September 2018 diff hist −40‎ Assembly QA Part 1 DEV Steps ‎ →‎Dev: Run dbCheck: Removed 'broken' sign now that it works