User contributions for Daniel
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4 June 2019
- 23:5623:56, 4 June 2019 diff hist −2 Ensembl QA hgwbeta current
- 23:5623:56, 4 June 2019 diff hist −14 GRC Patch Release hgwbeta current
- 23:5523:55, 4 June 2019 diff hist −4 UCSC Genes Staging Process hgwbeta
- 23:5523:55, 4 June 2019 diff hist −2 QAing Gencode Genes hgwbeta current
- 23:5423:54, 4 June 2019 diff hist −4 Email templates hgwbeta current
- 23:5423:54, 4 June 2019 diff hist −10 Requests for liftOver files hgwbeta
- 23:5323:53, 4 June 2019 diff hist −2 Assembly QA Part 4 RR Steps hgwbeta
- 23:5223:52, 4 June 2019 diff hist −28 Assembly QA Part 3 BETA Steps hgwbeta
- 23:5123:51, 4 June 2019 diff hist −4 HgTablesTest details hgwbeta
- 23:5123:51, 4 June 2019 diff hist −6 Monitoring Tasks Notes hgwbeta
- 23:5123:51, 4 June 2019 diff hist −6 PushQ new user hgwbeta current
- 23:5023:50, 4 June 2019 diff hist −8 Public Hub QA hgwbeta
- 23:5023:50, 4 June 2019 diff hist −2 QA scripts hgwbeta
- 23:4923:49, 4 June 2019 diff hist −2 QAing UCSC Genes hgwbeta
- 23:4923:49, 4 June 2019 diff hist −6 Conservation Track QA hgwbeta
- 23:4823:48, 4 June 2019 diff hist −20 Chains and Nets QA hgwbeta
- 23:4823:48, 4 June 2019 diff hist −4 New track checklist hgwbeta
- 23:4823:48, 4 June 2019 diff hist −2 Replacing old tables with new ones hgwbeta current
- 23:4723:47, 4 June 2019 diff hist −2 Pushing trackDb hgwbeta
- 23:4723:47, 4 June 2019 diff hist −2 ENCODE QA Checklist hgwbeta current
- 23:4623:46, 4 June 2019 diff hist −6 ENCODE QA hgwbeta current
- 23:4023:40, 4 June 2019 diff hist −2 CGI Testing mysqlbeta -> hgwbeta
- 23:4023:40, 4 June 2019 diff hist −4 BlastTabs Changing mysqlbeta to hgwbeta current
- 23:1223:12, 4 June 2019 diff hist −2 Assembly QA Part 4 RR Steps →RR: copyHgcentral: liftOverChain: manual move: Changing mysqlbeta to hgwbeta
- 19:0119:01, 4 June 2019 diff hist +46 Assembly QA Part 4 RR Steps →RR: Request push: hgdownload files: Adding caution statement.
3 June 2019
- 16:5516:55, 3 June 2019 diff hist +33 Assembly QA Part 4 RR Steps →RR: Check that tables do not need to be pushed again: Adding what Table differences are okay.
- 16:1316:13, 3 June 2019 diff hist +115 Assembly QA Part 3 BETA Steps →Beta: Re push any tables if needed after checking updateTimes: Adding list of tables on dev not on beta.
1 June 2019
- 00:0300:03, 1 June 2019 diff hist +334 Assembly QA Part 4 RR Steps →RR: Check that tables do not need to be pushed again: Correcting tables not to push list
31 May 2019
- 23:4723:47, 31 May 2019 diff hist −7 Chains and Nets QA →QAing on hgwbeta
- 21:4321:43, 31 May 2019 diff hist −3 Assembly QA Part 3 BETA Steps →Beta: Double check gbdb files
- 21:1721:17, 31 May 2019 diff hist +2 Assembly QA Part 3 BETA Steps →Beta: Push all tables to other assemblies to beta
- 21:0821:08, 31 May 2019 diff hist +12 Assembly QA Part 3 BETA Steps →Beta: Compare assembly.push list with dev mySQL table list
- 21:0721:07, 31 May 2019 diff hist −8 Assembly QA Part 3 BETA Steps →Beta: Compare assembly.push list with dev mySQL table list
22 May 2019
- 23:0523:05, 22 May 2019 diff hist +34 Assembly QA Part 3 BETA Steps →Beta: copyHgcentral test db defaultDb dev beta: Redundant if you did "all" above.
- 23:0423:04, 22 May 2019 diff hist +34 Assembly QA Part 3 BETA Steps →Beta: copyHgcentral test db dbDb dev beta: Redundant if you did "all" above.
- 23:0423:04, 22 May 2019 diff hist +34 Assembly QA Part 3 BETA Steps →Beta: copyHgcentral test db blatServers dev beta
- 23:0023:00, 22 May 2019 diff hist −25 Assembly QA Part 3 BETA Steps →Beta: Review copyHgcentral steps: Copy Paste easier
- 22:5022:50, 22 May 2019 diff hist −12 Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list: Consistency
- 22:4522:45, 22 May 2019 diff hist −5 Assembly QA Part 3 BETA Steps →Beta: Remove trackDb and hgFindSpec tables from your HIVE table list: Paste-able commands
- 22:4322:43, 22 May 2019 diff hist −4 Assembly QA Part 3 BETA Steps →Beta: Copy redmine table list to hive
- 22:4222:42, 22 May 2019 diff hist −14 Assembly QA Part 3 BETA Steps →Beta: Copy redmine table list to hive: Making commands paste-able
21 May 2019
- 23:4423:44, 21 May 2019 diff hist −90 Assembly QA Part 2 Track Steps Keeping variables consistent as $db
- 23:3723:37, 21 May 2019 diff hist +6 Assembly QA Part 1 DEV Steps →Dev: vsXXX: corruption: Improving command's pasteability
- 23:3023:30, 21 May 2019 diff hist +91 Assembly QA Part 1 DEV Steps →Dev: vsXXX: corruption: Adding common commands
- 23:2923:29, 21 May 2019 diff hist +67 Assembly QA Part 1 DEV Steps →Dev: vsXXX: check README: Making commands pasteable
- 23:2323:23, 21 May 2019 diff hist −6 Assembly QA Part 1 DEV Steps →Dev: vsXXX: check md5sum: Working commands
- 23:1523:15, 21 May 2019 diff hist −6 Assembly QA Part 1 DEV Steps →Dev: liftOver: check md5sum: Pasteable
- 23:1523:15, 21 May 2019 diff hist +14 Assembly QA Part 1 DEV Steps →Dev: database: check README: Making command paste-able
- 23:1323:13, 21 May 2019 diff hist −7 Assembly QA Part 1 DEV Steps →Dev: bigZips: check for corruption: Paste-able
- 23:1023:10, 21 May 2019 diff hist +2 Assembly QA Part 1 DEV Steps →Dev: bigZips: check md5sum
- 23:0823:08, 21 May 2019 diff hist −7 Assembly QA Part 1 DEV Steps →Dev: bigZips: check md5sum: Copy paste-able
- 23:0323:03, 21 May 2019 diff hist −9 Assembly QA Part 1 DEV Steps →Dev: Run dbCheck: Making command copy paste-able
- 23:0223:02, 21 May 2019 diff hist −3 Assembly QA Part 1 DEV Steps →Dev: Review downloads dir: changing silly command format
- 22:5222:52, 21 May 2019 diff hist +85 Assembly QA Part 1 DEV Steps →Dev: Gateway: Organism image check: Noting where to change reference in html
20 May 2019
- 23:2023:20, 20 May 2019 diff hist +22 Assembly QA Part 1 DEV Steps →Dev: Check that BLAT Server is running: Adding missing pre tags
- 23:1923:19, 20 May 2019 diff hist −25 Assembly QA Part 1 DEV Steps Changing assembly name and dev> tag to make the command more copyable.
13 May 2019
- 16:2916:29, 13 May 2019 diff hist −7 New track checklist →Validate on the RR: Wrong table mention
10 May 2019
- 23:5323:53, 10 May 2019 diff hist −10 New track checklist →Push Request: Changed it from trackDb_public and hgFindSpec to TrackDb and Friends
- 23:0223:02, 10 May 2019 diff hist +63 New track checklist →Downloads: Adding note about auto-filling downloads directory.
- 21:5621:56, 10 May 2019 diff hist −7 m New track checklist →Performance and Display
8 May 2019
- 18:4818:48, 8 May 2019 diff hist +41 New track checklist →Makedoc: Path correcting, typo removal
2 May 2019
- 17:3717:37, 2 May 2019 diff hist +103 HgTablesTest details →Ex error1: Adding note to ignore chainSelf errors more.
8 April 2019
- 16:4016:40, 8 April 2019 diff hist −117 New track checklist →Push to hgwbeta: ReOrganizing info, deleting redundancy
3 April 2019
- 23:3423:34, 3 April 2019 diff hist +64 New track checklist →joinerCheck: Adding note about big files.
- 17:1317:13, 3 April 2019 diff hist −621 New track checklist Deleting outdated instructions.
19 January 2019
- 01:3901:39, 19 January 2019 diff hist +322 Conservation Track QA →Precaution when pushing to the RR: Adding documentation
15 January 2019
- 21:3621:36, 15 January 2019 diff hist +129 Conservation Track QA →Final Steps: Adding path and more clear instructions.
11 January 2019
- 23:0723:07, 11 January 2019 diff hist +49 Conservation Track QA →Check multizway#wayFrames table: Short note about where to find species list
9 January 2019
- 19:0919:09, 9 January 2019 diff hist 0 m Conservation Track QA →Check multizway#wayFrames table
- 19:0819:08, 9 January 2019 diff hist +30 Conservation Track QA →Check multizway#wayFrames table: Adding path where none prev specified.
- 00:4200:42, 9 January 2019 diff hist +84 Conservation Track QA →Examine and possibly push records for the extFile and seq tables: Making commands consistent and copyable, using $db instead of hg38
5 December 2018
- 17:2317:23, 5 December 2018 diff hist +138 New track checklist →Release Log and URL: Adding convention to leave Release Log URL empty when multiple assemblies.
26 November 2018
- 17:1417:14, 26 November 2018 diff hist +23 Assembly QA Part 4 RR Steps →RR: Post Google Groups announcement: Changing name
21 November 2018
- 19:3219:32, 21 November 2018 diff hist 0 Assembly QA Part 4 RR Steps Changing order to make 'edit static docs' before 'post release announcement'
- 18:4818:48, 21 November 2018 diff hist +147 Assembly QA Part 4 RR Steps →RR: Post Google Groups announcement: Adding FB and Twitter announcement info.
- 01:3601:36, 21 November 2018 diff hist +157 Assembly QA Part 4 RR Steps →RR: FAQreleases.html and add, commit, git push: Better documentation
- 01:3401:34, 21 November 2018 diff hist +148 Assembly QA Part 4 RR Steps →RR: Edit credits:html and add:commit:push: Static doc help
- 01:3301:33, 21 November 2018 diff hist +145 Assembly QA Part 4 RR Steps →RR: Edit indexNews:html and add:commit:push: Clarifying Static protocols
- 01:3101:31, 21 November 2018 diff hist +149 Assembly QA Part 4 RR Steps →RR: Edit newsarch:html and add:commit:git:push: Clarifying static doc protocols.
16 November 2018
- 18:3818:38, 16 November 2018 diff hist +7 Assembly QA Part 4 RR Steps →RR: Turn on GenBank updates add:commit:push: Making IGNORE STEP message larger
14 November 2018
- 22:0422:04, 14 November 2018 diff hist +87 Assembly QA Part 4 RR Steps →RR: make your new assembly the default: Reducing two line command to one line, adding check work code.
- 21:5921:59, 14 November 2018 diff hist +1 Assembly QA Part 4 RR Steps →RR: hgCentral:dbDb set active equal to 1: Format edits
- 21:5821:58, 14 November 2018 diff hist +236 Assembly QA Part 4 RR Steps →RR: hgCentral:dbDb set active equal to 1: Adding code to do it in command line and check changes.
13 November 2018
- 23:3523:35, 13 November 2018 diff hist +93 Assembly QA Part 3 BETA Steps →Beta: Check that your assembly is listed in hgwdev.dbs: Clarify replacement vs adding to the list.
10 November 2018
- 00:2300:23, 10 November 2018 diff hist +183 Assembly QA Part 4 RR Steps →RR: Add or update symlink htdocs:hgdownload currentGenomes: Adding warning to avoid unlink error
8 November 2018
- 23:3023:30, 8 November 2018 diff hist −13 Assembly QA Part 3 BETA Steps →Beta: Check that your assembly is listed in hgwdev.dbs: Changing this to the proper dbs file, as instructed by Braney
- 21:5921:59, 8 November 2018 diff hist +161 Assembly QA Part 3 BETA Steps →Beta: Push gbdb files: Including grep shortcut
7 November 2018
- 22:0722:07, 7 November 2018 diff hist +99 Assembly QA Part 3 BETA Steps →Beta: Review copyHgcentral steps: Highlighting shortcut.
- 21:5821:58, 7 November 2018 diff hist −70 Assembly QA Part 3 BETA Steps →Beta: Push all tables for your assembly to beta: Restoring original
- 21:5621:56, 7 November 2018 diff hist +70 Assembly QA Part 3 BETA Steps →Beta: Push all tables for your assembly to beta: Specifying which assembly
- 19:5819:58, 7 November 2018 diff hist −10 Assembly QA Part 3 BETA Steps →Beta: Remove certain tables from your assembly push list: Making more pastable
- 19:3219:32, 7 November 2018 diff hist −7 Assembly QA Part 3 BETA Steps →Beta: Make table PUSH lists for each assembly: Making it easier to copy and paste code
- 00:0600:06, 7 November 2018 diff hist +147 Assembly QA Part 3 BETA Steps →Beta: Copy redmine table list to hive: Commenting on redundancy.
6 November 2018
- 19:0819:08, 6 November 2018 diff hist +28 Assembly QA Part 2 Track Steps →Tracks: The BIG QA Script: qaGbTracks: Adding note to ignore label length Errors.
- 00:5300:53, 6 November 2018 diff hist −17 Assembly QA Part 2 Track Steps →Tracks: The BIG QA Script: qaGbTracks: Removed cut command to reflect Chris's changes, hopefully gets changed further.
3 November 2018
- 00:2800:28, 3 November 2018 diff hist +1 m Assembly QA Part 1 DEV Steps →Dev: Review blastTabs wiki
- 00:2700:27, 3 November 2018 diff hist +75 Assembly QA Part 1 DEV Steps →Dev: Review blastTabs wiki: Syncing info.
- 00:2200:22, 3 November 2018 diff hist +31 m Assembly QA Part 1 DEV Steps →Dev: Permissions check: downloads dir
- 00:1500:15, 3 November 2018 diff hist +341 Assembly QA Part 1 DEV Steps →Dev: Permissions check: downloads dir: Making this check easier by grepping out the junk
29 October 2018
- 17:3517:35, 29 October 2018 diff hist +101 Assembly QA Part 1 DEV Steps →Dev: bigZips: check README: Minor edit to clarify test options
