User contributions for Rhead
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20 October 2011
- 18:0518:05, 20 October 2011 diff hist +215 QAing UCSC Genes →Actual steps: extra notes about HGGeneCheck
19 October 2011
- 00:4100:41, 19 October 2011 diff hist +45 UCSC Genes Staging Process →Data Involved: clarified hgdownload files
18 October 2011
- 19:4219:42, 18 October 2011 diff hist +47 Post-Release-Checklist →Post Release Checklist for UCSC Genes: formatting
- 19:3519:35, 18 October 2011 diff hist +1,211 Post-Release-Checklist →Post Release Checklist for UCSC Genes: moved list of people to alert/email from staging process page to here
- 19:3519:35, 18 October 2011 diff hist −1,211 UCSC Genes Staging Process →Releasing to the public website: moved list of people to alert/email to post-release-checklist
- 19:0919:09, 18 October 2011 diff hist −329 Post-Release-Checklist →Post Release Checklist for UCSC Genes: removed known gene lists instructions
- 18:5418:54, 18 October 2011 diff hist −506 UCSC Genes Staging Process →Releasing to the public website: removed instructions for known gene lists for google (we don't do this anymore)
- 18:4918:49, 18 October 2011 diff hist +214 UCSC Genes Staging Process →Data Involved: added hgPal files
10 October 2011
- 23:4423:44, 10 October 2011 diff hist +51 Training new Browser Staff →Logistics: added link to galt's notes on ssh authentication
6 October 2011
- 00:0400:04, 6 October 2011 diff hist +20 UCSC Genes Staging Process →Details About UniProt and Proteome Databases: simplified wording
5 October 2011
- 23:2823:28, 5 October 2011 diff hist +868 UCSC Genes Staging Process →Details About UniProt and Proteome Databases: more info on the symlinks
- 21:3321:33, 5 October 2011 diff hist +1 UCSC Genes Staging Process →Data Involved: there are 6 other blastTab assemblies, not 5
3 October 2011
- 22:4522:45, 3 October 2011 diff hist +287 GenBank QA →Other checks: added location of file that contains mrna/est/refSeq counts
30 September 2011
- 22:1522:15, 30 September 2011 diff hist −19 m GenBank QA →Tables: formatting
- 19:1319:13, 30 September 2011 diff hist +2,556 N GenBank QA used old documentation at http://genecats.cse.ucsc.edu/qa/test-protocols/tracks.html as a starting point
29 September 2011
- 23:2023:20, 29 September 2011 diff hist +1,627 UCSC Genes Staging Process →Details About UniProt and Proteome Databases: Fan has shed some light on our setup!
28 September 2011
- 23:5423:54, 28 September 2011 diff hist −60 QAing UCSC Genes →Tables Related to UCSC Genes That are Separate tracks: removed omim tables - these are only related to refSeq genes now
27 September 2011
- 03:3203:32, 27 September 2011 diff hist +328 QA scripts added checkBOT
- 03:1203:12, 27 September 2011 diff hist +20 QA scripts →mypush: formatting
- 03:1003:10, 27 September 2011 diff hist +56 QA scripts link to new track checklist scripts, took out "no .csh" comments
- 03:0403:04, 27 September 2011 diff hist +717 QA scripts added mypush, added <pre> tags to make usage statements look nicer
- 02:4402:44, 27 September 2011 diff hist +5,786 QA scripts many more added!
- 02:1102:11, 27 September 2011 diff hist +1,483 QA scripts getting started with redmine 3183
26 September 2011
- 22:1922:19, 26 September 2011 diff hist −386 CGI testing responsibilities removed guest CGI mumbo-jumbo (redmine #4576)
23 September 2011
- 21:4521:45, 23 September 2011 diff hist +176 Details pages -- conventions added notes about links
14 September 2011
- 22:2822:28, 14 September 2011 diff hist +13 Static Page Protocol →Files for Internal Use: reformatted to match other sections
- 22:2522:25, 14 September 2011 diff hist +45 Static Page Protocol →Files Destined for hgdownload: reformatted to match previous sections
- 21:2721:27, 14 September 2011 diff hist +105 Static Page Protocol added optional instruction for making your own sandbox to htdocsExtras section
- 21:2421:24, 14 September 2011 diff hist +20 Static Page Protocol →Large Files either Destined for the Round Robin or are Linked on the Genome Wiki (These files were too large to be checked into the main htdocs repository): reformatted/reworded to match above
- 21:1821:18, 14 September 2011 diff hist −3 Static Page Protocol →Files Destined for the Round Robin and Mirrors (Public Documents): reformatted and reworded
12 September 2011
- 22:2822:28, 12 September 2011 diff hist +3 New track checklist →Chromosome coverage: wording tweak
- 22:2822:28, 12 September 2011 diff hist −89 New track checklist →Chromosome coverage: rearranged section. Replaced graphs.csh with histogram option on countPerChrom.csh.
9 September 2011
- 18:1218:12, 9 September 2011 diff hist +106 CBSE citation format added preference to link directly to journal articles if they are open access (per donna per david)
- 18:0718:07, 9 September 2011 diff hist +92 New track checklist →Track description: links should go directly to journal articles if they are open access (per donna per david)
2 September 2011
- 19:1619:16, 2 September 2011 diff hist −2 m New track checklist →Track description
- 19:1619:16, 2 September 2011 diff hist +210 New track checklist →Track description: clarified where links should go
1 September 2011
- 22:1722:17, 1 September 2011 diff hist −176 Make your own virtual space →Populate my /usr/local/apache/cgi-bin-myusername/ directory for the first time by doing the following:: took out reference to QA, as this is for everyone; said to put env vars in config file
30 August 2011
- 22:2422:24, 30 August 2011 diff hist +26 CGI Testing →hgTables: added note to try filtering on related tables
- 21:3121:31, 30 August 2011 diff hist +294 CGI Testing →hgTables: updating after taking over this CGI and talking to mary about how she was testing it
24 August 2011
- 01:2601:26, 24 August 2011 diff hist −216 QA Home Page →Mailing List Maven: we now keep track of the mail list schedule on the google calendar
- 01:2001:20, 24 August 2011 diff hist +1 m QA scripts →Scripts
9 August 2011
- 01:1501:15, 9 August 2011 diff hist +192 CGI Testing →TrackCheck: small fixes, added directions to get to hgw0 logs
- 01:0101:01, 9 August 2011 diff hist +977 CGI Testing →hgTracks: adding in more information about TrackCheck
4 August 2011
- 19:4919:49, 4 August 2011 diff hist +474 Creating a pushQ Entry Added instruction to name related tracks
- 18:5718:57, 4 August 2011 diff hist −93 Creating a pushQ Entry reworded notes
- 18:4518:45, 4 August 2011 diff hist +5 Creating a pushQ Entry changed /data/apache/ to /usr/local/apache
- 18:4518:45, 4 August 2011 diff hist +35 Creating a pushQ Entry ann says we don't use the "online help" field.
- 02:4702:47, 4 August 2011 diff hist +245 Details pages -- conventions made a few things less verbose, reordered/reworded, added a few notes
- 02:2502:25, 4 August 2011 diff hist +24 m Creating a pushQ Entry No edit summary
- 02:2002:20, 4 August 2011 diff hist +434 Creating a pushQ Entry added more of the missing push queue sections
- 01:5901:59, 4 August 2011 diff hist +14 Creating a pushQ Entry No edit summary
- 01:5501:55, 4 August 2011 diff hist +42 Creating a pushQ Entry reformatted notes
- 01:3701:37, 4 August 2011 diff hist +163 Creating a pushQ Entry added another link for using release tags if editing trackDb
- 01:3401:34, 4 August 2011 diff hist +680 Creating a pushQ Entry added to push queue instructions
- 01:0701:07, 4 August 2011 diff hist +225 Creating a pushQ Entry added to checklist for track being complete
- 00:3800:38, 4 August 2011 diff hist +252 CGI testing responsibilities reformatting, adding guest cgi
- 00:1900:19, 4 August 2011 diff hist −36 CGI Testing moved hgTables up since it will always be tested; reworded a couple of things
- 00:1100:11, 4 August 2011 diff hist +245 CGI Testing updating with new directive of systematically testing only hgTracks and hgTables
3 August 2011
- 22:2422:24, 3 August 2011 diff hist +98 CGI testing responsibilities links to version notes and testing instructions
- 22:1322:13, 3 August 2011 diff hist +373 CGI testing responsibilities new CGI duties after Jim said we should focus testing on hgTracks and hgTables
23 July 2011
- 03:2403:24, 23 July 2011 diff hist +94 CGI Testing →hgTracks
19 July 2011
- 22:1922:19, 19 July 2011 diff hist +30 CGI testing responsibilities →no one
- 22:1822:18, 19 July 2011 diff hist +76 CGI testing responsibilities →no one
- 22:0522:05, 19 July 2011 diff hist +121 CGI Testing added hgHubConnect
28 June 2011
- 21:1021:10, 28 June 2011 diff hist +394 CGI Testing Added larry's directions for finding the error console in IE
- 19:0619:06, 28 June 2011 diff hist 0 New track checklist →FeatureBits and Gaps: changed getYield example now that the script doesn't use only the CDS parts of refGene
24 June 2011
- 19:0419:04, 24 June 2011 diff hist +14 New track checklist →FeatureBits and Gaps: changed union to intersection in getYield.csh output (the script is changed, too)
- 18:5818:58, 24 June 2011 diff hist +10 New track checklist moved comparison section to be next to featureBits
22 June 2011
- 01:2201:22, 22 June 2011 diff hist +592 New track checklist →FeatureBits and Gaps: Added more about comparing new tracks to existing tracks after QA meeting with Jim.
17 June 2011
- 02:1902:19, 17 June 2011 diff hist −379 New track checklist →Index: removed section. Jim's says that we started doing this in 2003 due to a bug in mysql that was causing the index not to load right. We would find any problems now from performance checks.
16 June 2011
- 00:3900:39, 16 June 2011 diff hist −297 New track checklist →Default Position: deleted this section, per Jim.
- 00:3800:38, 16 June 2011 diff hist −236 New track checklist →Protein sequence check (gene annotations only): removed this section, per Jim.
8 June 2011
- 19:1919:19, 8 June 2011 diff hist +430 CGI Testing added note about using the error console
23 April 2011
- 01:1401:14, 23 April 2011 diff hist +199 SNP Track QA added links to angie's presentation
- 01:0501:05, 23 April 2011 diff hist +184 SNP Track QA formatting and added note about haplotypes and PAR regions.
- 00:5800:58, 23 April 2011 diff hist 0 m SNP Track QA capitalized things
- 00:5500:55, 23 April 2011 diff hist −5 SNP Track QA switched to using section headers instead of bullets
- 00:5300:53, 23 April 2011 diff hist −182 SNP Track QA added trackUi checks and description page info; reorganized a bit
- 00:3100:31, 23 April 2011 diff hist +73 SNP Track QA →AT RELEASE BE SURE TO:: downloads.html link
- 00:2900:29, 23 April 2011 diff hist +753 SNP Track QA added info about snp-masked fasta files, ls-snp/chimera links, and genome graphs
22 April 2011
- 23:3923:39, 22 April 2011 diff hist +169 SNP Track QA link to announcement about split into 4 tracks
- 23:3323:33, 22 April 2011 diff hist −2 m SNP Track QA No edit summary
- 23:3223:32, 22 April 2011 diff hist −312 SNP Track QA updated what should be checked in mysql tables. The exceptions are now listed in the snp### table.
21 April 2011
- 00:5100:51, 21 April 2011 diff hist +93 CGI Testing Added link to windows test machine instructions.
29 March 2011
- 06:4006:40, 29 March 2011 diff hist +122 QA Home Page →Mailing List Maven: added note about resetting cart after clicking link that includes hgsid
28 March 2011
- 18:5818:58, 28 March 2011 diff hist +163 QA Home Page →Mailing List Maven: Added note to create sessions instead of using hgsid. Specifically listed servers we should be sending links to.
17 March 2011
- 21:3021:30, 17 March 2011 diff hist +35 CGI Testing Added link to new CGI testing responsibilities page.
- 21:2821:28, 17 March 2011 diff hist +13 CGI testing responsibilities →Katrina: Katrina will take hgFileSearch for now. Thank you, Katrina!!!
- 21:0221:02, 17 March 2011 diff hist +27 CGI testing responsibilities formatting
- 21:0021:00, 17 March 2011 diff hist +497 N CGI testing responsibilities Initial import from http://genecats.cse.ucsc.edu/qa/cgiTesting.html
14 March 2011
- 19:1919:19, 14 March 2011 diff hist +226 Main Page →Organization: reorganizing w/ vanessa
- 19:0619:06, 14 March 2011 diff hist +49 Main Page →Organization
- 19:0019:00, 14 March 2011 diff hist 0 Main Page →Organization
11 March 2011
- 22:1822:18, 11 March 2011 diff hist +166 Outdated instructions for releasing an assembly →Check all sample queries on hgGateway page: Added note to check for a range query in sample searches.
- 22:1522:15, 11 March 2011 diff hist +1 Static content for new assemblies →~/kent/src/hg/makeDb/trackDb///description.html: typo, and text was from hg18 not hg19
- 21:0221:02, 11 March 2011 diff hist −3 Static content for new assemblies →~/kent/src/hg/makeDb/trackDb///description.html: formatting
- 21:0121:01, 11 March 2011 diff hist +373 Static content for new assemblies →~/kent/src/hg/makeDb/trackDb///description.html: Added a note to check for a range query example
- 03:2803:28, 11 March 2011 diff hist +227 Updating blat servers Decided that the script that builds hgcentral.sql should be run by the buildmeister.
- 03:2503:25, 11 March 2011 diff hist +247 Outdated instructions for releasing an assembly →Update hgcentral.sql for mirrors: Decided that the script that builds hgcentral.sql should be run by the buildmeister.
10 March 2011
- 21:3621:36, 10 March 2011 diff hist +113 Windows testing machine →Logging in from Linux: added ways to control window size on linux