User contributions for Rhead

17 August 2012

• 23:1423:14, 17 August 2012 diff hist +159‎ Conservation Track QA ‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: more wikipedia links
• 23:0423:04, 17 August 2012 diff hist +108‎ Conservation Track QA ‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added taxonomy browser back. It's not useless. :)
• 22:5722:57, 17 August 2012 diff hist +169‎ Conservation Track QA ‎ →‎Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added links to relevant wikipedia pages
• 19:4719:47, 17 August 2012 diff hist +111‎ Details pages -- conventions ‎ added note that SOE links should use ".soe." instead of ".cse." (per Jorge)
• 00:1800:18, 17 August 2012 diff hist +6‎ Conservation Track QA ‎ took out reference to NCBI taxonomy browser after having trouble with it (e.g., human, chimp, and gorilla all appear to be at same level but shouldn't be)

16 August 2012

• 22:4722:47, 16 August 2012 diff hist +132‎ GenBank QA ‎ →‎Tracks: added location of genbank counts file
• 19:1119:11, 16 August 2012 diff hist +37‎ Conservation Track QA ‎ moved instruction to check the maf file annotation types agains the display to "things we used to do"
• 02:4002:40, 16 August 2012 diff hist +220‎ GenBank QA ‎ added note to compare current tracks to those on a previous assembly, if available

15 August 2012

• 21:4721:47, 15 August 2012 diff hist −3‎ Genbank updates ‎ changed make command, per braney current

26 July 2012

• 18:3318:33, 26 July 2012 diff hist +80‎ Static Page Protocol ‎ →‎Files Destined for the Round Robin and Mirrors (Public Documents): added note about gitu
• 03:0203:02, 26 July 2012 diff hist +335‎ Static Page Protocol ‎ →‎Files Destined for the Round Robin and Mirrors (Public Documents): added note about using FIND=find, noted in redmine #8410

2 July 2012

• 22:3322:33, 2 July 2012 diff hist −155‎ Genbank updates ‎ Removed instructions to delete from /cluster/data/genbank/data/ftp (per Braney). Made the instructions generic for enabling and disabling.

13 June 2012

• 19:3119:31, 13 June 2012 diff hist −20‎ Outdated instructions for releasing an assembly ‎ →‎Push the database and tables from hgwdev to hgwbeta: removed another instruction to leave out tableDescriptions table when pushing from dev to beta
• 19:2819:28, 13 June 2012 diff hist −18‎ Outdated instructions for releasing an assembly ‎ →‎Push the database and tables from hgwdev to hgwbeta: took out instruction to remove tableDescriptions

7 June 2012

• 02:3602:36, 7 June 2012 diff hist +147‎ CGI Testing ‎ added Cricket's suggestion for using the CSHL Long RNA Seq track as a stress test track

25 May 2012

• 21:2521:25, 25 May 2012 diff hist +18‎ Post-Release-Checklist ‎ →‎UniProtKB: changed the bit about running makeUniProtFile.csh in a specific directory. RM#7308.

14 May 2012

• 23:1223:12, 14 May 2012 diff hist +3‎ Outdated instructions for releasing an assembly ‎ →‎Push image file to hgwbeta and rr: changed to specify push from beta to rr, not dev

10 May 2012

• 21:2621:26, 10 May 2012 diff hist +305‎ Updating blat servers ‎ added note to notify mirrors

23 April 2012

• 20:4320:43, 23 April 2012 diff hist −10‎ Outdated instructions for releasing an assembly ‎ moved pressing the done button in the push queue to the end
• 20:1920:19, 23 April 2012 diff hist 0‎ Outdated instructions for releasing an assembly ‎ moved check for phylogenetic order to staging section

13 March 2012

• 18:0618:06, 13 March 2012 diff hist +361‎ Post-Release-Checklist ‎ →‎UniProtKB: updated with info from Benoit Bely at UniProt

24 February 2012

• 04:1604:16, 24 February 2012 diff hist +348‎ QAing UCSC Genes ‎ →‎QAing the many related tables: example loop for getting table row counts
• 04:0604:06, 24 February 2012 diff hist +165‎ QAing UCSC Genes ‎ →‎QAing the Gene Set: one more note from Jim about checking kgXref
• 04:0204:02, 24 February 2012 diff hist +244‎ UCSC Genes Staging Process ‎ added section for unused tables
• 03:5903:59, 24 February 2012 diff hist +458‎ QAing UCSC Genes ‎ Added FASTA Alignments section
• 03:3503:35, 24 February 2012 diff hist +44‎ UCSC Genes Staging Process ‎ →‎Download page: push the cds fasta files
• 03:3303:33, 24 February 2012 diff hist −34‎ UCSC Genes Staging Process ‎ →‎Databases: removed redundant link to ucsc genes tables
• 03:1503:15, 24 February 2012 diff hist +225‎ QAing UCSC Genes ‎ →‎QAing the Gene Set: Added featureBits note.
• 03:1403:14, 24 February 2012 diff hist −2‎ m QAing UCSC Genes ‎ →‎QAing the uniProt and proteome databases
• 03:1303:13, 24 February 2012 diff hist +186‎ QAing UCSC Genes ‎ →‎QAing the uniProt and proteome databases: formatting; adding note about symlinks
• 02:2202:22, 24 February 2012 diff hist +57‎ UCSC Genes Staging Process ‎ →‎uniProt and Proteome databases: added note to push the READMEs
• 02:2002:20, 24 February 2012 diff hist +7‎ m UCSC Genes Staging Process ‎ →‎Update the hgcentral database
• 02:1602:16, 24 February 2012 diff hist +225‎ QAing UCSC Genes ‎ →‎QAing the many related tables: list of tables that should have same counts
• 02:0902:09, 24 February 2012 diff hist −2‎ UCSC Genes Staging Process ‎ →‎update isPcr: changed header name
• 01:5801:58, 24 February 2012 diff hist +711‎ UCSC Genes Staging Process ‎ split pcr target into hgwbeta and RR sections
• 01:2001:20, 24 February 2012 diff hist +786‎ QAing UCSC Genes ‎ added PCR Target section
• 00:5000:50, 24 February 2012 diff hist −412‎ UCSC Genes Staging Process ‎ Moved intro information from here to the QAing page
• 00:4600:46, 24 February 2012 diff hist −64‎ QAing UCSC Genes ‎ →‎Tables Related to UCSC Genes That are Separate tracks: noted that exoniphy will no longer be built
• 00:4200:42, 24 February 2012 diff hist −133‎ QAing UCSC Genes ‎ removed links to other ucsc genes pages from bottom of page
• 00:4100:41, 24 February 2012 diff hist +274‎ QAing UCSC Genes ‎ Moved intro information here from the Staging page
• 00:3200:32, 24 February 2012 diff hist −209‎ UCSC Genes Staging Process ‎ →‎Post-Release: Removed section now that all ucsc genes wiki pages are linked on every page
• 00:3100:31, 24 February 2012 diff hist +151‎ Post-Release-Checklist ‎ added "wiki pages about known genes" section
• 00:3000:30, 24 February 2012 diff hist +147‎ UCSC Genes Staging Process ‎ added "wiki pages about known genes" section
• 00:2900:29, 24 February 2012 diff hist +149‎ UCSC Genes tables ‎ added "wiki pages about known genes" section
• 00:2600:26, 24 February 2012 diff hist +66‎ QAing UCSC Genes ‎ →‎wiki pages about known genes: reordered links, added note about staging link
• 00:1100:11, 24 February 2012 diff hist −509‎ Post-Release-Checklist ‎ removed details about hgcentral, otherOrgs.ra and uniProt (they're in the QAing and Staging pages now), and added announcement section

23 February 2012

• 22:3522:35, 23 February 2012 diff hist −221‎ Post-Release-Checklist ‎ →‎Exoniphy: removed this section per Ann and Hiram.
• 21:0421:04, 23 February 2012 diff hist +1,106‎ QAing UCSC Genes ‎ Added a section for QAing uniProt and proteome databases
• 20:1120:11, 23 February 2012 diff hist +232‎ QAing UCSC Genes ‎ →‎QAing the many related tables: Added note to check Old UCSC Genes, Alt Events and blastTab tables.
• 20:0620:06, 23 February 2012 diff hist 0‎ UCSC Genes Staging Process ‎ →‎Files for Searching: changed hg18 to <db>