User contributions for Vanessa

8 March 2011

• 00:1700:17, 8 March 2011 diff hist +7,702‎ N VI quick start ‎ New page: ==See also:== Graphical [http://www.viemu.com/a_vi_vim_graphical_cheat_sheet_tutorial.html vi/vim Cheat Sheet] ==Insert/Command States== vi is usually either in an 'insert' state, or in...
• 00:1300:13, 8 March 2011 diff hist +2,755‎ N Updating blat servers ‎ New page: There are 3 places where blat servers are located. Assemblies that are important (eg. human or mouse) and are expected to get a lot of hits are hosted here at UCSC and will have a blat hos...

7 March 2011

• 23:5023:50, 7 March 2011 diff hist +9,178‎ N UCSC Genes Staging Process ‎ New page: The UCSC Gene set is created at UCSC for three vertebrate organisms: human, mouse, and rat. It is built once during the initial release of a new assembly, then updated sporadically after ...
• 22:2122:21, 7 March 2011 diff hist +1,408‎ N Training new Browser Staff ‎ New page: (see also: [http://genecats.cse.ucsc.edu/qa/newQaHire.html Getting Started for Browser QA Engineers] and [http://genecats.cse.ucsc.edu/eng/index.html Getting Started for Browser Dev Engin...
• 22:1022:10, 7 March 2011 diff hist +4,003‎ N Static content for new assemblies ‎ New page: Category:Browser QA ==Static Doc changes for New and Updated Assemblies== After editing the docs for your assembly, test them in your sandbox ('''make user''' at the top of the browse...
• 21:5621:56, 7 March 2011 diff hist +3,262‎ N Static Page Protocol ‎ New page: Category:Browser QACategory:Browser Development == Files Destined for the Round Robin and Mirrors (Public Documents) == *The made files are located in /usr/local/apache/htdocs (th...
• 21:5321:53, 7 March 2011 diff hist +4,117‎ N Static Page JS Protocol ‎ New page: Category:Browser QACategory:Browser Development To solve some testing issues, there is a new procedure for hard coded links that go from hgwdev --> hgwbeta --> RR and for those t...
• 21:2221:22, 7 March 2011 diff hist +3,999‎ N Running joinerCheck for all databases ‎ New page: == Overview == The joinerCheck program is run bi-monthly on all active databases on the hgwbeta machine. Errors that are found may be newly introduced or pre-existing. Corrections to data ...
• 21:2021:20, 7 March 2011 diff hist +2,336‎ N Replacing old tables with new ones ‎ New page: When you are updating a track that already exists on the public site with new data or a new assembly, follow the steps below sequentially to make sure that the old data and new data are no...
• 21:1621:16, 7 March 2011 diff hist +29,567‎ N Outdated instructions for releasing an assembly ‎ New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update to an assembly, check to see if chromosome sizes have ch...
• 21:1521:15, 7 March 2011 diff hist +1,796‎ N QA Checklist for Cancer Browser ‎ New page: ''This is a rough draft for now'' == QA checklist for tracks on the cancer browser == * Tracks can have both Chromosomes and Genesets as display options, check both ** Occasionally trac...
• 21:1321:13, 7 March 2011 diff hist +2,589‎ N Pushing trackDb ‎ New page: '''a.k.a. "trackDb and friends"''' Starting with v243 CGIs and the release of the Track Search feature, every time we push the trackDb table, we need to also push the index files that go ...
• 21:1321:13, 7 March 2011 diff hist +1,495‎ N Post-Release-Checklist ‎ New page: == Post Release Checklist for UCSC Genes == This page capture the things to remember after the release of UCSC Genes for the new assembly. * Update the metadata in hgcentral: ::set hgNea...
• 21:1021:10, 7 March 2011 diff hist +2,831‎ N Patching a Branch ‎ New page: Edited to use Git and cherry-picking. '''How? ("Who" in parenthesis)''' * ('''QA'''): Find an error in the binaries, determine if it needs to be patched, and alert the Developer. * ('''...
• 19:5519:55, 7 March 2011 diff hist +29,525‎ N New Assembly Release Process Details ‎ New page: Go to the Push Checklist ==Stage and test on hgwbeta== <ol> <li> If you are releasing an update assembly, check to see if chromosome sizes have changed significa...
• 19:5319:53, 7 March 2011 diff hist +2,245‎ N Cherry-picking a change in git ‎ New page: Edited for Git and cherry-picking. (Need to ask Hiram about changing the title of the page to remove the cvs branch tag reference in the title of this article.) The CGIs are built onto h...
• 19:4819:48, 7 March 2011 diff hist +1,592‎ N MakePushQSql.pl ‎ New page: This script was written by Angie. It is a script which assists developers in creating a [http://hgwbeta.cse.ucsc.edu/cgi-bin/qaPushQ qapushq table] for a new ge...
• 19:3619:36, 7 March 2011 diff hist +4,923‎ N Make your own virtual space ‎ New page: ===So you want to have your own copies of the binaries and your own hgwdev-user.cse.ucsc.edu browser? Here is a walkthrough:=== ====Request a "virtual space" from the cluster-admins:===...
• 19:3319:33, 7 March 2011 diff hist +1,113‎ N Internet browser testing ‎ New page: Category:Browser QA ==OS/Browser combinations QA has access to:== This is a list of the browser/OS combinations that QA has access to. The (h) annotation means that that person has t...
• 19:0719:07, 7 March 2011 diff hist +1,618‎ N Genbank updates ‎ New page: To disable genbank updates to an assembly: In addition to removing the assembly name from the hgwbeta.dbs and rr.dbs files, the files here need to be removed: /cluster/data/genbank/data...