User contributions for Vanessa
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24 May 2012
- 17:1617:16, 24 May 2012 diff hist +12 ENCODE QA →Run encodeQaSqlRelease: added the server
- 17:1317:13, 24 May 2012 diff hist +10 ENCODE QA →Set subIds to Released: added which server
13 April 2012
- 17:1217:12, 13 April 2012 diff hist +138 ENCODE QA →Sections: added guidelines for latin terminology
16 December 2011
- 22:4922:49, 16 December 2011 diff hist +1 Static Page JS Protocol No edit summary
- 22:4022:40, 16 December 2011 diff hist +616 Static Page JS Protocol added euronode treatment to this code
30 August 2011
- 22:3922:39, 30 August 2011 diff hist 0 CGI Testing →main page testing: changed coordinates to working ones
22 August 2011
- 21:3621:36, 22 August 2011 diff hist +134 Make your own virtual space →Keep it current:: added file permissions and export PATH
- 17:3417:34, 22 August 2011 diff hist −2 Make your own virtual space →Keep it current:: changed cvs reference to git
- 17:3117:31, 22 August 2011 diff hist +3 Make your own virtual space →Populate my /usr/local/apache/cgi-bin-myusername/ directory for the first time by doing the following:: changed the cvs reference to git
19 August 2011
- 17:4917:49, 19 August 2011 diff hist +135 QA Home Page →CGI Build Process & Testing: Added google calendar information
- 17:4717:47, 19 August 2011 diff hist +135 QA Home Page →Mailing List Maven: added google calendar info
9 August 2011
- 23:3723:37, 9 August 2011 diff hist +11 CGI Testing →track search: added metadata arrow change
- 20:0320:03, 9 August 2011 diff hist +26 CGI Testing →main page testing: added the new resize feature
8 August 2011
- 22:4522:45, 8 August 2011 diff hist +313 CGI Build Process →Push to hgw0 only: updated to reflect hgw0 and added comments.
9 June 2011
- 00:0600:06, 9 June 2011 diff hist +24 Pre-QA added browser QA category
23 May 2011
- 17:5117:51, 23 May 2011 diff hist +78 ENCODE QA →MetaData: updated experimental id info based on tims CGI changes
20 May 2011
- 16:1416:14, 20 May 2011 diff hist +182 ENCODE QA →Push download files: added supplemental data
13 May 2011
- 17:4117:41, 13 May 2011 diff hist +202 ENCODE QA →Searchable: adding track search to process
15 April 2011
- 20:4220:42, 15 April 2011 diff hist −2 ENCODE QA →Do the data make sense Biologically?: fixing formatting
- 17:3317:33, 15 April 2011 diff hist 0 ENCODE QA →Functionality (track controls)
14 April 2011
- 23:1823:18, 14 April 2011 diff hist +112 ENCODE QA →Functionality (track controls): added link to subtrack configuration
13 April 2011
- 23:2523:25, 13 April 2011 diff hist +56 Subtrack Configuration adding categories current
- 23:0523:05, 13 April 2011 diff hist +1 Subtrack Configuration fixed more typos
- 23:0223:02, 13 April 2011 diff hist 0 Subtrack Configuration fixed typo
- 22:4922:49, 13 April 2011 diff hist +3,175 N Subtrack Configuration Initial checkin
7 April 2011
- 23:0723:07, 7 April 2011 diff hist +55 ENCODE QA →Check on public: explained hgwbeta-public
- 23:0323:03, 7 April 2011 diff hist +316 ENCODE QA →Staging on hgwbeta: added info about a known cart issue and what to look for.
6 April 2011
- 20:4020:40, 6 April 2011 diff hist +53 ENCODE QA →Drop depreciated tables on mysqlbeta (if subsequent release): more clarification
- 20:3720:37, 6 April 2011 diff hist +65 ENCODE QA →Drop depreciated tables on mysqlbeta (if release 2): clarified
- 20:3420:34, 6 April 2011 diff hist −63 ENCODE QA →Drop tables (if necessary): clarifying and removing hgwbeta instruction.
- 20:2520:25, 6 April 2011 diff hist +91 ENCODE QA →Push trackDb+friends: adding additional info about tableDescriptions
5 April 2011
- 19:0319:03, 5 April 2011 diff hist +433 Static Page Protocol →Files Destined for the Round Robin and Mirrors (Public Documents): adding info about SSI
4 April 2011
- 22:5422:54, 4 April 2011 diff hist +1 ENCODE QA →Table coordinates + features: fixed typo
- 21:0521:05, 4 April 2011 diff hist +11 ENCODE QA →Matrix: rephrased sentence
- 18:5518:55, 4 April 2011 diff hist +2 ENCODE QA →Drop depreciated tables on mysqlbeta (if release 2): add brackets to clarify
- 18:5218:52, 4 April 2011 diff hist +129 ENCODE QA →Staging on hgwbeta: added drop table info
- 16:2516:25, 4 April 2011 diff hist 0 ENCODE QA →Matrix: fixed typo
30 March 2011
- 20:4120:41, 30 March 2011 diff hist +259 QA Home Page →CGI Build Process & Testing: added browser testing guidelines
- 17:4117:41, 30 March 2011 diff hist +70 QA Home Page →Tools: added wiki cheat sheet link
28 March 2011
- 23:5223:52, 28 March 2011 diff hist +351 QA Home Page adding the tools section
- 23:5023:50, 28 March 2011 diff hist +59 QA scripts No edit summary
- 23:4523:45, 28 March 2011 diff hist +1,091 N QA scripts copied katrina scripts cheat sheet over
- 23:3523:35, 28 March 2011 diff hist +178 UNIX Commands added sym link section
- 23:3223:32, 28 March 2011 diff hist +5,712 N MySQL Commands added Katrina's cheat sheet
- 22:5722:57, 28 March 2011 diff hist +58 UNIX Commands Adding categories
- 22:5022:50, 28 March 2011 diff hist +2,739 N UNIX Commands created unix page from Katrina's cheat sheet
- 21:2921:29, 28 March 2011 diff hist +40 Training new Browser Staff →Logistics
- 21:2221:22, 28 March 2011 diff hist +91 QA Home Page add blat server section
- 21:0721:07, 28 March 2011 diff hist +2 QA Home Page →Editing Static Docs: fixed link
- 21:0621:06, 28 March 2011 diff hist +269 QA Home Page →CGI Build Process & Testing: added browser info
- 20:5320:53, 28 March 2011 diff hist +343 QA Home Page editing static docs and reorganized
- 20:3420:34, 28 March 2011 diff hist +130 QA Home Page Genome Browser Setup
- 20:2320:23, 28 March 2011 diff hist +50 QA Home Page →GIT (Source Code Management System)
- 20:2020:20, 28 March 2011 diff hist +50 Training new Browser Staff →Tools
- 19:0919:09, 28 March 2011 diff hist +206 QA Home Page No edit summary
- 18:1218:12, 28 March 2011 diff hist +95 Training new Browser Staff →Logistics: adding mailing list info
- 18:0918:09, 28 March 2011 diff hist −815 Training new Browser Staff Undo revision 182 by Vanessa (Talk)
- 17:3417:34, 28 March 2011 diff hist +815 Training new Browser Staff adding mailing list section
- 17:3017:30, 28 March 2011 diff hist +6 QA Home Page No edit summary
24 March 2011
- 23:4623:46, 24 March 2011 diff hist +814 QA Home Page added info to mailing list and added QA track section
- 21:0721:07, 24 March 2011 diff hist +264 QA Home Page Added a general goals section
- 20:5520:55, 24 March 2011 diff hist +390 QA Home Page Added CGI section
- 00:1700:17, 24 March 2011 diff hist +130 QA Home Page added link to subject matter experts
- 00:0200:02, 24 March 2011 diff hist +1,039 N QA Home Page Initiated page
23 March 2011
- 23:0323:03, 23 March 2011 diff hist +102 Training new Browser Staff →Logistics: adding links to other wiki pages.
- 23:0223:02, 23 March 2011 diff hist +423 N .plan initial creation
- 22:1422:14, 23 March 2011 diff hist −163 Cherry-picking a change in git removed the note to change the title to reflect git.
- 22:0522:05, 23 March 2011 diff hist +44 N Moving a Branch Tag And Patching a Branch Moving a Branch Tag And Patching a Branch moved to Cherry-picking a change in git: the old title was in reference to CVS current
- 22:0522:05, 23 March 2011 diff hist 0 m Cherry-picking a change in git Moving a Branch Tag And Patching a Branch moved to Cherry-picking a change in git: the old title was in reference to CVS
15 March 2011
- 00:0800:08, 15 March 2011 diff hist +69 Help:Contents No edit summary current
14 March 2011
- 23:4323:43, 14 March 2011 diff hist +105 CGI Testing →hgCustom: adding info on testing detail pages for custom tracks
- 20:1420:14, 14 March 2011 diff hist +70 Main Page →Getting started: addded wiki cheat sheet
- 16:0216:02, 14 March 2011 diff hist +14 Main Page subcategory clarification
- 16:0116:01, 14 March 2011 diff hist +53 Main Page clarified formula
12 March 2011
- 00:4300:43, 12 March 2011 diff hist −1 Main Page No edit summary
- 00:4300:43, 12 March 2011 diff hist +462 Main Page Add organization info
- 00:1600:16, 12 March 2011 diff hist +271 Main Page Adding common links.
11 March 2011
- 23:1323:13, 11 March 2011 diff hist −58 Main Page No edit summary
10 March 2011
- 23:4523:45, 10 March 2011 diff hist −34 Category:Browser QA Cancer cancer project has there own wiki current
- 23:4423:44, 10 March 2011 diff hist −22 QA Checklist for Cancer Browser No edit summary current
- 23:2823:28, 10 March 2011 diff hist +29 N Category:Technical FAQ New page: Helpful Technical Information current
- 23:2723:27, 10 March 2011 diff hist +76 N Category:Browser QA dev handoff New page: Developer information for handing off things to QA Category: Browser QA current
- 22:1122:11, 10 March 2011 diff hist +28 Cherry-picking a change in git No edit summary
- 22:0922:09, 10 March 2011 diff hist +31 Pushing trackDb No edit summary
- 22:0922:09, 10 March 2011 diff hist +34 N Category:Browser QA Cancer New page: QA Cancer Category:Browser QA
- 22:0822:08, 10 March 2011 diff hist +31 QA Checklist for Cancer Browser No edit summary
- 22:0622:06, 10 March 2011 diff hist +28 Patching a Branch No edit summary
- 22:0522:05, 10 March 2011 diff hist +33 Frequently asked mailing list questions No edit summary
- 22:0522:05, 10 March 2011 diff hist +65 N Category:Browser QA New Assembly New page: Category:Browser QA QA process for releasing a new assembly. current
- 22:0322:03, 10 March 2011 diff hist +42 N Category:Browser QA Ensembl New page: Category:Browser QA tracks QA Ensembl current
- 22:0222:02, 10 March 2011 diff hist +32 Ensembl QA No edit summary
- 22:0122:01, 10 March 2011 diff hist +33 Ensembl Links No edit summary current
- 21:5821:58, 10 March 2011 diff hist +37 Outdated instructions for releasing an assembly No edit summary
- 21:5721:57, 10 March 2011 diff hist +28 Search robot No edit summary current
- 21:5621:56, 10 March 2011 diff hist +37 Static content for new assemblies No edit summary
- 21:5421:54, 10 March 2011 diff hist +33 Make your own virtual space No edit summary
- 21:5321:53, 10 March 2011 diff hist +25 Category:Browser QA Archived No edit summary current
- 21:5221:52, 10 March 2011 diff hist −25 Category:FAQs removing category current
- 21:5021:50, 10 March 2011 diff hist +36 MakePushQSql.pl No edit summary current
- 21:4721:47, 10 March 2011 diff hist +36 Creating a pushQ Entry No edit summary
- 21:4721:47, 10 March 2011 diff hist +1,294 N Details pages -- conventions New page: Category:Browser Development Category:Browser QA dev handoff Details pages should be consistent from track to track. To ease the burden on QA, developers are requested to: # h...
- 21:4121:41, 10 March 2011 diff hist +52 N Category:Browser QA CGI New page: CGI Build and Testing Pages Category:Browser QA current
- 21:4021:40, 10 March 2011 diff hist +28 Custom Track Examples No edit summary
- 21:4021:40, 10 March 2011 diff hist +28 CGI Testing No edit summary
- 21:3921:39, 10 March 2011 diff hist +28 CGI Build Schedule No edit summary
- 21:3921:39, 10 March 2011 diff hist +28 CGI Build Process No edit summary
- 21:3821:38, 10 March 2011 diff hist −25 Category:Browser Development Undo revision 111 by Vanessa (Talk)
- 21:3721:37, 10 March 2011 diff hist +25 Category:Browser Development No edit summary
- 21:3621:36, 10 March 2011 diff hist −174 Category:Browser QA No edit summary
- 21:3521:35, 10 March 2011 diff hist +25 Category:Browser QA Internet Browser Undo revision 107 by Vanessa (Talk) current
- 21:3421:34, 10 March 2011 diff hist −25 Category:Browser QA Internet Browser No edit summary
- 21:3321:33, 10 March 2011 diff hist +32 Category:Browser QA No edit summary
- 21:3221:32, 10 March 2011 diff hist +34 N Category:Browser QA ENCODE New page: Category:Browser QA QA ENCODE current
- 21:3121:31, 10 March 2011 diff hist −4 ENCODE QA Checklist No edit summary
- 21:3021:30, 10 March 2011 diff hist +35 ENCODE QA Checklist No edit summary
- 21:3021:30, 10 March 2011 diff hist +31 ENCODE QA No edit summary
- 21:2621:26, 10 March 2011 diff hist +35 Post-Release-Checklist No edit summary
- 21:2521:25, 10 March 2011 diff hist +35 QAing UCSC Genes No edit summary
- 21:2421:24, 10 March 2011 diff hist +32 Category:Browser QA UCSC Genes No edit summary current
- 21:2421:24, 10 March 2011 diff hist +16 N Category:Browser QA UCSC Genes New page: QAing UCSC Genes
- 21:2321:23, 10 March 2011 diff hist +35 UCSC Genes Staging Process No edit summary
- 21:2121:21, 10 March 2011 diff hist +41 Windows testing machine No edit summary
- 21:2021:20, 10 March 2011 diff hist +42 Category:Browser QA No edit summary
- 21:2021:20, 10 March 2011 diff hist +83 N Category:Browser QA Internet Browser New page: Pages related to the different types of internet browsers. Category:Browser QA
- 21:1821:18, 10 March 2011 diff hist +41 Internet browser testing No edit summary
- 21:1521:15, 10 March 2011 diff hist −9 Category:Browser QA Training No edit summary current
- 21:1521:15, 10 March 2011 diff hist +80 N Category:Browser QA Training New page: Category:Browser QA Training Pages related to training new Browser QA staff
- 21:1321:13, 10 March 2011 diff hist +34 Category:Browser QA No edit summary
- 21:1221:12, 10 March 2011 diff hist +33 VI quick start No edit summary
- 21:1221:12, 10 March 2011 diff hist +33 Training new Browser Staff No edit summary
- 20:1420:14, 10 March 2011 diff hist +24 SNP Track QA added a new category Category:Browser QA
- 20:1320:13, 10 March 2011 diff hist +24 QAing UCSC Genes added new category Category:Browser QA
- 20:1220:12, 10 March 2011 diff hist +24 Ensembl QA added new category Category:Browser QA
- 20:1120:11, 10 March 2011 diff hist +24 Conservation Track QA added new category Category:Browser QA
- 20:1020:10, 10 March 2011 diff hist +24 Chains and Nets QA added new category Category:Browser QA
- 20:0920:09, 10 March 2011 diff hist +24 All.joiner problem added new category Category:Browser QA
- 20:0620:06, 10 March 2011 diff hist +25 Category:Browser QA tracks No edit summary current
- 20:0520:05, 10 March 2011 diff hist +32 Category:Browser QA No edit summary
- 20:0420:04, 10 March 2011 diff hist −32 Category:Browser QA tracks No edit summary
- 20:0320:03, 10 March 2011 diff hist +32 Category:Browser QA tracks No edit summary
- 00:3400:34, 10 March 2011 diff hist +86 N Category:Browser QA Archived New page: This section started with outdated pages that were moved from the original genomewiki.
- 00:3200:32, 10 March 2011 diff hist +1,844 N V154 Release New page: == Errors on hgwbeta that have not yet been fixed == # Bug in Gene Sorter for dm2 -- Archana. # Error 500 on S.cerevisiae Gene Sorter -- Archana. # hgSession sharing/saving -- Kayla. == ... current
- 00:3000:30, 10 March 2011 diff hist +2,351 N URLs for Details Pages New page: ==Adding URL links to Track Details Pages== One or more URL links can be added to details pages using trackDb settings. In ~/kent/src/hg/hgc/hgc.c, functions are created that print the de... current
- 00:2900:29, 10 March 2011 diff hist +8,035 N New Release Checklist New page: Go to New Assembly Release Process Details page. {| border="1" cellpadding="2" width=800px |-valign="top" |width="10%"|'''Start''' |width="10%"|...
- 00:2800:28, 10 March 2011 diff hist +9 New Assembly Release Process Details changed category
- 00:2400:24, 10 March 2011 diff hist +2,585 N Moving a Branch Tag New page: Obsolete CVS page refer to Patching_a_Branch '''How? ("Who" in parenthesis)''' * ('''Build-Meister'''): Check the CVS log to make sure that you are only picking up only one change (... current
- 00:0500:05, 10 March 2011 diff hist +65 File:Hg19uc002ypa.2.pdf No edit summary current
- 00:0400:04, 10 March 2011 diff hist 0 N File:Hg19uc002ypa.2.pdf No edit summary
9 March 2011
- 23:5923:59, 9 March 2011 diff hist −33 Chains and Nets QA →Update and push downloads.html: removed hard link
- 23:5723:57, 9 March 2011 diff hist −33 Chains and Nets QA →Push to the RR: removed hard link so it will now point to page in this wiki
- 23:4223:42, 9 March 2011 diff hist +80 ENCODE QA →Other things to check by hand: added mean + whiskers info
- 21:3621:36, 9 March 2011 diff hist +37 Chains and Nets QA →Push to the RR: hard linked to genomewiki
- 21:3321:33, 9 March 2011 diff hist +87 N Category:Browser QA tracks New page: This category contains pages that give directions on how to QA a specific type of track
- 21:3221:32, 9 March 2011 diff hist +1,497 N 2008-08-archive was a file on genomewiki (converted it to a page) current
- 21:3121:31, 9 March 2011 diff hist −24 Archived assemblies →Archive dated Aug 25, 2008: converting file to a new page
- 21:2621:26, 9 March 2011 diff hist +52 Training new Browser Staff →Data: hard linked to genome wiki
- 21:2521:25, 9 March 2011 diff hist +116 Training new Browser Staff →Tools: hard linked to genome wiki
- 21:1721:17, 9 March 2011 diff hist +55 Pushing trackDb hard linked to genome wiki
- 21:0621:06, 9 March 2011 diff hist +37 New track checklist →Make Public: hard linked to genomewiki
- 21:0121:01, 9 March 2011 diff hist +45 New track checklist fixed link to point to genomewiki
- 20:2620:26, 9 March 2011 diff hist +55 N Category:FAQs New page: Various FAQs on the GenomeWiki Category:Categories
- 20:2420:24, 9 March 2011 diff hist +60 N Category:Browser Development New page: Browser Features research and development Category:FAQs
- 20:2020:20, 9 March 2011 diff hist +2,952 N SNP Track QA New page: If you have any general questions about snps this is a good resource: http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=helpsnpfaq. In addition to the SNP-specific checks on this page, b...
- 20:1920:19, 9 March 2011 diff hist +26,213 N QAing UCSC Genes New page: == hgGene Page Source Information == Click on the following link to view a sample hgGene page annotated with the sources of the different components: [[Image:hg19uc002ypa.2.pdf|thumb=Imag...
- 20:1820:18, 9 March 2011 diff hist +1,124 N Ensembl QA New page: There are periodic updates to all Ensembl Genes tracks in all dbs. Here is a list of things to do in addition to the regular QA you would do normally for a track: *Run qaEnsGenes.csh **Ru...
- 20:1720:17, 9 March 2011 diff hist +8,047 N Conservation Track QA New page: ==Preparing to QA== The Conservation track will consist of one or more of the following subtracks: multiz#way, phyloP, phastCons and Most Conserved/Conserved Elements. Sometimes if there ...
- 20:1120:11, 9 March 2011 diff hist +8,804 N Chains and Nets QA New page: Category:Browser QA tracks There are two components of chains/nets Chains_Nets: the actual chains/nets themselves and the liftOver directories/files. The liftOver [http://genome.u...
- 20:0820:08, 9 March 2011 diff hist +2,399 N All.joiner problem New page: There is a problem with all.joiner rules and the -database parameter. This is taken from an email from Ann in 2007: Bob and I just ran into something sneaky with running joinerCheck or r...
- 19:3019:30, 9 March 2011 diff hist +15,972 N New track checklist New page: This is the checklist for QA to follow when releasing Genome Browser tracks. General rule: stop testing when you come to the first non-trivial error, and bounce the track to the B queue ...
- 19:2319:23, 9 March 2011 diff hist +72 N Category:Browser QA New page: Genome Browser QA procedures and tools Category:Browser Development
- 19:1519:15, 9 March 2011 diff hist +1,136 N Search robot New page: One of the robots that runs automatically during the CGI Build Process, is the testSearch robot. The code is kent/src/hg/qa/testSearch.c. testSearch - test search functionality. usag...
8 March 2011
- 00:2000:20, 8 March 2011 diff hist +3,384 N Windows testing machine New page: We now have remote access to a Windows machine! We can use this machine from the comfort of our own desks for testing CGIs, bug fixes, new features, etc on the win7 operating system. It ...
- 00:1700:17, 8 March 2011 diff hist +7,702 N VI quick start New page: ==See also:== Graphical [http://www.viemu.com/a_vi_vim_graphical_cheat_sheet_tutorial.html vi/vim Cheat Sheet] ==Insert/Command States== vi is usually either in an 'insert' state, or in...
- 00:1300:13, 8 March 2011 diff hist +2,755 N Updating blat servers New page: There are 3 places where blat servers are located. Assemblies that are important (eg. human or mouse) and are expected to get a lot of hits are hosted here at UCSC and will have a blat hos...
7 March 2011
- 23:5023:50, 7 March 2011 diff hist +9,178 N UCSC Genes Staging Process New page: The UCSC Gene set is created at UCSC for three vertebrate organisms: human, mouse, and rat. It is built once during the initial release of a new assembly, then updated sporadically after ...
- 22:2122:21, 7 March 2011 diff hist +1,408 N Training new Browser Staff New page: (see also: [http://genecats.cse.ucsc.edu/qa/newQaHire.html Getting Started for Browser QA Engineers] and [http://genecats.cse.ucsc.edu/eng/index.html Getting Started for Browser Dev Engin...
- 22:1022:10, 7 March 2011 diff hist +4,003 N Static content for new assemblies New page: Category:Browser QA ==Static Doc changes for New and Updated Assemblies== After editing the docs for your assembly, test them in your sandbox ('''make user''' at the top of the browse...
- 21:5621:56, 7 March 2011 diff hist +3,262 N Static Page Protocol New page: Category:Browser QACategory:Browser Development == Files Destined for the Round Robin and Mirrors (Public Documents) == *The made files are located in /usr/local/apache/htdocs (th...
- 21:5321:53, 7 March 2011 diff hist +4,117 N Static Page JS Protocol New page: Category:Browser QACategory:Browser Development To solve some testing issues, there is a new procedure for hard coded links that go from hgwdev --> hgwbeta --> RR and for those t...
- 21:2221:22, 7 March 2011 diff hist +3,999 N Running joinerCheck for all databases New page: == Overview == The joinerCheck program is run bi-monthly on all active databases on the hgwbeta machine. Errors that are found may be newly introduced or pre-existing. Corrections to data ...
- 21:2021:20, 7 March 2011 diff hist +2,336 N Replacing old tables with new ones New page: When you are updating a track that already exists on the public site with new data or a new assembly, follow the steps below sequentially to make sure that the old data and new data are no...
- 21:1621:16, 7 March 2011 diff hist +29,567 N Outdated instructions for releasing an assembly New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update to an assembly, check to see if chromosome sizes have ch...
- 21:1521:15, 7 March 2011 diff hist +1,796 N QA Checklist for Cancer Browser New page: ''This is a rough draft for now'' == QA checklist for tracks on the cancer browser == * Tracks can have both Chromosomes and Genesets as display options, check both ** Occasionally trac...
- 21:1321:13, 7 March 2011 diff hist +2,589 N Pushing trackDb New page: '''a.k.a. "trackDb and friends"''' Starting with v243 CGIs and the release of the Track Search feature, every time we push the trackDb table, we need to also push the index files that go ...
- 21:1321:13, 7 March 2011 diff hist +1,495 N Post-Release-Checklist New page: == Post Release Checklist for UCSC Genes == This page capture the things to remember after the release of UCSC Genes for the new assembly. * Update the metadata in hgcentral: ::set hgNea...
- 21:1021:10, 7 March 2011 diff hist +2,831 N Patching a Branch New page: Edited to use Git and cherry-picking. '''How? ("Who" in parenthesis)''' * ('''QA'''): Find an error in the binaries, determine if it needs to be patched, and alert the Developer. * ('''...
- 19:5519:55, 7 March 2011 diff hist +29,525 N New Assembly Release Process Details New page: Go to the Push Checklist ==Stage and test on hgwbeta== <ol> <li> If you are releasing an update assembly, check to see if chromosome sizes have changed significa...
- 19:5319:53, 7 March 2011 diff hist +2,245 N Cherry-picking a change in git New page: Edited for Git and cherry-picking. (Need to ask Hiram about changing the title of the page to remove the cvs branch tag reference in the title of this article.) The CGIs are built onto h...
- 19:4819:48, 7 March 2011 diff hist +1,592 N MakePushQSql.pl New page: This script was written by Angie. It is a script which assists developers in creating a [http://hgwbeta.cse.ucsc.edu/cgi-bin/qaPushQ qapushq table] for a new ge...
- 19:3619:36, 7 March 2011 diff hist +4,923 N Make your own virtual space New page: ===So you want to have your own copies of the binaries and your own hgwdev-user.cse.ucsc.edu browser? Here is a walkthrough:=== ====Request a "virtual space" from the cluster-admins:===...
- 19:3319:33, 7 March 2011 diff hist +1,113 N Internet browser testing New page: Category:Browser QA ==OS/Browser combinations QA has access to:== This is a list of the browser/OS combinations that QA has access to. The (h) annotation means that that person has t...
- 19:0719:07, 7 March 2011 diff hist +1,618 N Genbank updates New page: To disable genbank updates to an assembly: In addition to removing the assembly name from the hgwbeta.dbs and rr.dbs files, the files here need to be removed: /cluster/data/genbank/data...
- 19:0519:05, 7 March 2011 diff hist +5,417 N Frequently asked mailing list questions New page: This page is intended to be a collection of previously answered questions on the Genome and Genome-Mirror mailing lists that are useful for answering repeat questions. ==Genome== If a use...
- 19:0219:02, 7 March 2011 diff hist +1,679 N Ensembl Links New page: ==Creating URL Links to Ensembl== * On the Ensembl details pages, there are links to the Ensembl Transcript ID and Ensembl Protein ID details pages. e.g. Ensembl Gene Link: ENST0000037...
- 19:0119:01, 7 March 2011 diff hist +4,372 N ENCODE QA Checklist New page: ==Getting Started== # Check kent/src/hg/makeDb/doc/encodeDccHg18/*.txt to determine if/how the file diverges from reality. # Make a list of all tables (new & updated that need to be pushed...
- 18:5718:57, 7 March 2011 diff hist +22,154 N ENCODE QA New page: ==Getting Started== * Choose a track from the encodePushQ (sub pushQ accessed from pushQ Gateway). * Also claim the [http://redmine.soe.ucsc.edu Redmine] Issue of that track & change statu...
- 18:5318:53, 7 March 2011 diff hist +2,777 N Creating a pushQ Entry New page: After you have finished creating a track and it is ready for QA, you should add an entry to the qapushq table on hgwbeta. There is a [http://hgwbeta.cse.ucsc.edu/cgi-bin/qaPushQ CGI] for t...
- 18:5018:50, 7 March 2011 diff hist +18,383 N Custom Track Examples New page: Return to: CGI_Testing All examples below can be pasted directly into the custom tracks input menu for hg18. ==RGB Item Example== <pre> browser position chr7:127471196-127495720 bro...
- 18:4718:47, 7 March 2011 diff hist +13,130 N CGI Testing New page: Before testing your CGIs, check the [http://genecats.cse.ucsc.edu/builds/versions.html version notes] for recent changes particular to your CGIs. Pay extra attention to the changes when t...
- 18:4418:44, 7 March 2011 diff hist +2,313 N CGI Build Schedule New page: Go to the CGI Build Process. == Three-week CGI Release Cycle == <TABLE BORDER CELLSPACING=0 CELLPADDING=5 VALIGN="top"> <TR> <TH>Monday</TH> <TH>Tuesda...
- 18:4118:41, 7 March 2011 diff hist +15,172 N CGI Build Process New page: This page explains the process we use for building and releasing our CGIs. This is done on a three-week schedule. The builds are built into sandboxes which are ...
- 18:3718:37, 7 March 2011 diff hist +2,717 N CBSE citation format New page: CBSE has requested that we standardise on the PubMed citation format throughout the genome browser. Here is a link to the PubMed Journal Article [http://www.nlm.nih.gov/bsd/policy/cit_for...
- 18:2918:29, 7 March 2011 diff hist +8,857 N BlastTabs New page: ==When to update the blastTab tables== Update the blastTabs anytime the reference gene track for any of the following species is updated/changed: human, mouse, rat, zebrafish, fly, C. ele...
- 18:2718:27, 7 March 2011 diff hist +563 N Big Bed/Wig QA New page: == Tools Available for QA of big* tracks == * bigWigToBedGraph — this program converts a bigWig file to ASCII bedGraph format. * bigWigSummary — this program extracts summary ...
- 18:2218:22, 7 March 2011 diff hist +3,024 N Archived assemblies New page: Older assemblies are archived on the archives server, at [http://genome-archive.cse.ucsc.edu/ genome-archive.cse.ucsc.edu]. However, some metadata about the archived assemblies is kept in...
4 March 2011
- 20:5420:54, 4 March 2011 diff hist +389 N Help:Contents New page: Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software. == Getting started == * [http://www.mediawiki.org/wiki/Manual:Configu...
- 20:5320:53, 4 March 2011 diff hist −29 MediaWiki:Sidebar No edit summary
- 20:5020:50, 4 March 2011 diff hist −56 MediaWiki:Sidebar No edit summary
- 20:4820:48, 4 March 2011 diff hist +35 MediaWiki:Sidebar No edit summary
- 20:4120:41, 4 March 2011 diff hist +247 N MediaWiki:Sidebar New page: * navigation ** mainpage|mainpage-description ** Special:Categories|Categories ** portal-url|portal ** currentevents-url|currentevents ** recentchanges-url|recentchanges ** randompage-url...
1 March 2011
- 22:4422:44, 1 March 2011 diff hist −5 Main Page No edit summary
- 22:4322:43, 1 March 2011 diff hist +6 Main Page →Getting started