User contributions for Vanessa

7 March 2011

• 21:1521:15, 7 March 2011 diff hist +1,796‎ N QA Checklist for Cancer Browser ‎ New page: ''This is a rough draft for now'' == QA checklist for tracks on the cancer browser == * Tracks can have both Chromosomes and Genesets as display options, check both ** Occasionally trac...
• 21:1321:13, 7 March 2011 diff hist +2,589‎ N Pushing trackDb ‎ New page: '''a.k.a. "trackDb and friends"''' Starting with v243 CGIs and the release of the Track Search feature, every time we push the trackDb table, we need to also push the index files that go ...
• 21:1321:13, 7 March 2011 diff hist +1,495‎ N Post-Release-Checklist ‎ New page: == Post Release Checklist for UCSC Genes == This page capture the things to remember after the release of UCSC Genes for the new assembly. * Update the metadata in hgcentral: ::set hgNea...
• 21:1021:10, 7 March 2011 diff hist +2,831‎ N Patching a Branch ‎ New page: Edited to use Git and cherry-picking. '''How? ("Who" in parenthesis)''' * ('''QA'''): Find an error in the binaries, determine if it needs to be patched, and alert the Developer. * ('''...
• 19:5519:55, 7 March 2011 diff hist +29,525‎ N New Assembly Release Process Details ‎ New page: Go to the Push Checklist ==Stage and test on hgwbeta== <ol> <li> If you are releasing an update assembly, check to see if chromosome sizes have changed significa...
• 19:5319:53, 7 March 2011 diff hist +2,245‎ N Cherry-picking a change in git ‎ New page: Edited for Git and cherry-picking. (Need to ask Hiram about changing the title of the page to remove the cvs branch tag reference in the title of this article.) The CGIs are built onto h...
• 19:4819:48, 7 March 2011 diff hist +1,592‎ N MakePushQSql.pl ‎ New page: This script was written by Angie. It is a script which assists developers in creating a [http://hgwbeta.cse.ucsc.edu/cgi-bin/qaPushQ qapushq table] for a new ge...
• 19:3619:36, 7 March 2011 diff hist +4,923‎ N Make your own virtual space ‎ New page: ===So you want to have your own copies of the binaries and your own hgwdev-user.cse.ucsc.edu browser? Here is a walkthrough:=== ====Request a "virtual space" from the cluster-admins:===...
• 19:3319:33, 7 March 2011 diff hist +1,113‎ N Internet browser testing ‎ New page: Category:Browser QA ==OS/Browser combinations QA has access to:== This is a list of the browser/OS combinations that QA has access to. The (h) annotation means that that person has t...
• 19:0719:07, 7 March 2011 diff hist +1,618‎ N Genbank updates ‎ New page: To disable genbank updates to an assembly: In addition to removing the assembly name from the hgwbeta.dbs and rr.dbs files, the files here need to be removed: /cluster/data/genbank/data...
• 19:0519:05, 7 March 2011 diff hist +5,417‎ N Frequently asked mailing list questions ‎ New page: This page is intended to be a collection of previously answered questions on the Genome and Genome-Mirror mailing lists that are useful for answering repeat questions. ==Genome== If a use...
• 19:0219:02, 7 March 2011 diff hist +1,679‎ N Ensembl Links ‎ New page: ==Creating URL Links to Ensembl== * On the Ensembl details pages, there are links to the Ensembl Transcript ID and Ensembl Protein ID details pages. e.g. Ensembl Gene Link: ENST0000037...
• 19:0119:01, 7 March 2011 diff hist +4,372‎ N ENCODE QA Checklist ‎ New page: ==Getting Started== # Check kent/src/hg/makeDb/doc/encodeDccHg18/*.txt to determine if/how the file diverges from reality. # Make a list of all tables (new & updated that need to be pushed...
• 18:5718:57, 7 March 2011 diff hist +22,154‎ N ENCODE QA ‎ New page: ==Getting Started== * Choose a track from the encodePushQ (sub pushQ accessed from pushQ Gateway). * Also claim the [http://redmine.soe.ucsc.edu Redmine] Issue of that track & change statu...
• 18:5318:53, 7 March 2011 diff hist +2,777‎ N Creating a pushQ Entry ‎ New page: After you have finished creating a track and it is ready for QA, you should add an entry to the qapushq table on hgwbeta. There is a [http://hgwbeta.cse.ucsc.edu/cgi-bin/qaPushQ CGI] for t...
• 18:5018:50, 7 March 2011 diff hist +18,383‎ N Custom Track Examples ‎ New page: Return to: CGI_Testing All examples below can be pasted directly into the custom tracks input menu for hg18. ==RGB Item Example== <pre> browser position chr7:127471196-127495720 bro...
• 18:4718:47, 7 March 2011 diff hist +13,130‎ N CGI Testing ‎ New page: Before testing your CGIs, check the [http://genecats.cse.ucsc.edu/builds/versions.html version notes] for recent changes particular to your CGIs. Pay extra attention to the changes when t...
• 18:4418:44, 7 March 2011 diff hist +2,313‎ N CGI Build Schedule ‎ New page: Go to the CGI Build Process. == Three-week CGI Release Cycle == <TABLE BORDER CELLSPACING=0 CELLPADDING=5 VALIGN="top"> <TR> <TH>Monday</TH> <TH>Tuesda...
• 18:4118:41, 7 March 2011 diff hist +15,172‎ N CGI Build Process ‎ New page: This page explains the process we use for building and releasing our CGIs. This is done on a three-week schedule. The builds are built into sandboxes which are ...
• 18:3718:37, 7 March 2011 diff hist +2,717‎ N CBSE citation format ‎ New page: CBSE has requested that we standardise on the PubMed citation format throughout the genome browser. Here is a link to the PubMed Journal Article [http://www.nlm.nih.gov/bsd/policy/cit_for...