User contributions for Vanessa

9 March 2011

• 20:2020:20, 9 March 2011 diff hist +2,952‎ N SNP Track QA ‎ New page: If you have any general questions about snps this is a good resource: http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=helpsnpfaq. In addition to the SNP-specific checks on this page, b...
• 20:1920:19, 9 March 2011 diff hist +26,213‎ N QAing UCSC Genes ‎ New page: == hgGene Page Source Information == Click on the following link to view a sample hgGene page annotated with the sources of the different components: [[Image:hg19uc002ypa.2.pdf|thumb=Imag...
• 20:1820:18, 9 March 2011 diff hist +1,124‎ N Ensembl QA ‎ New page: There are periodic updates to all Ensembl Genes tracks in all dbs. Here is a list of things to do in addition to the regular QA you would do normally for a track: *Run qaEnsGenes.csh **Ru...
• 20:1720:17, 9 March 2011 diff hist +8,047‎ N Conservation Track QA ‎ New page: ==Preparing to QA== The Conservation track will consist of one or more of the following subtracks: multiz#way, phyloP, phastCons and Most Conserved/Conserved Elements. Sometimes if there ...
• 20:1120:11, 9 March 2011 diff hist +8,804‎ N Chains and Nets QA ‎ New page: Category:Browser QA tracks There are two components of chains/nets Chains_Nets: the actual chains/nets themselves and the liftOver directories/files. The liftOver [http://genome.u...
• 20:0820:08, 9 March 2011 diff hist +2,399‎ N All.joiner problem ‎ New page: There is a problem with all.joiner rules and the -database parameter. This is taken from an email from Ann in 2007: Bob and I just ran into something sneaky with running joinerCheck or r...
• 19:3019:30, 9 March 2011 diff hist +15,972‎ N New track checklist ‎ New page: This is the checklist for QA to follow when releasing Genome Browser tracks. General rule: stop testing when you come to the first non-trivial error, and bounce the track to the B queue ...
• 19:2319:23, 9 March 2011 diff hist +72‎ N Category:Browser QA ‎ New page: Genome Browser QA procedures and tools Category:Browser Development
• 19:1519:15, 9 March 2011 diff hist +1,136‎ N Search robot ‎ New page: One of the robots that runs automatically during the CGI Build Process, is the testSearch robot. The code is kent/src/hg/qa/testSearch.c. testSearch - test search functionality. usag...

8 March 2011

• 00:2000:20, 8 March 2011 diff hist +3,384‎ N Windows testing machine ‎ New page: We now have remote access to a Windows machine! We can use this machine from the comfort of our own desks for testing CGIs, bug fixes, new features, etc on the win7 operating system. It ...
• 00:1700:17, 8 March 2011 diff hist +7,702‎ N VI quick start ‎ New page: ==See also:== Graphical [http://www.viemu.com/a_vi_vim_graphical_cheat_sheet_tutorial.html vi/vim Cheat Sheet] ==Insert/Command States== vi is usually either in an 'insert' state, or in...
• 00:1300:13, 8 March 2011 diff hist +2,755‎ N Updating blat servers ‎ New page: There are 3 places where blat servers are located. Assemblies that are important (eg. human or mouse) and are expected to get a lot of hits are hosted here at UCSC and will have a blat hos...

7 March 2011

• 23:5023:50, 7 March 2011 diff hist +9,178‎ N UCSC Genes Staging Process ‎ New page: The UCSC Gene set is created at UCSC for three vertebrate organisms: human, mouse, and rat. It is built once during the initial release of a new assembly, then updated sporadically after ...
• 22:2122:21, 7 March 2011 diff hist +1,408‎ N Training new Browser Staff ‎ New page: (see also: [http://genecats.cse.ucsc.edu/qa/newQaHire.html Getting Started for Browser QA Engineers] and [http://genecats.cse.ucsc.edu/eng/index.html Getting Started for Browser Dev Engin...
• 22:1022:10, 7 March 2011 diff hist +4,003‎ N Static content for new assemblies ‎ New page: Category:Browser QA ==Static Doc changes for New and Updated Assemblies== After editing the docs for your assembly, test them in your sandbox ('''make user''' at the top of the browse...
• 21:5621:56, 7 March 2011 diff hist +3,262‎ N Static Page Protocol ‎ New page: Category:Browser QACategory:Browser Development == Files Destined for the Round Robin and Mirrors (Public Documents) == *The made files are located in /usr/local/apache/htdocs (th...
• 21:5321:53, 7 March 2011 diff hist +4,117‎ N Static Page JS Protocol ‎ New page: Category:Browser QACategory:Browser Development To solve some testing issues, there is a new procedure for hard coded links that go from hgwdev --> hgwbeta --> RR and for those t...
• 21:2221:22, 7 March 2011 diff hist +3,999‎ N Running joinerCheck for all databases ‎ New page: == Overview == The joinerCheck program is run bi-monthly on all active databases on the hgwbeta machine. Errors that are found may be newly introduced or pre-existing. Corrections to data ...
• 21:2021:20, 7 March 2011 diff hist +2,336‎ N Replacing old tables with new ones ‎ New page: When you are updating a track that already exists on the public site with new data or a new assembly, follow the steps below sequentially to make sure that the old data and new data are no...
• 21:1621:16, 7 March 2011 diff hist +29,567‎ N Outdated instructions for releasing an assembly ‎ New page: ==Pre-staging of assembly on hgwbeta== ===Check if chromosome sizes have changed significantly=== * If you are releasing an update to an assembly, check to see if chromosome sizes have ch...