ClusterID Chr Start End Direction Peak Score Focus Ratio Annotation Detailed Annotation Distance to TSS Nearest PromoterID PromoterID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description CpG% GC% GRE_adaptedIR3 Best Motif log-odds Score chr14-1 chr14 39187655 39187691 + 990.6 NA Intergenic GSAT_MM|Satellite|Satellite 614005 NM_177816 328381 Mm.235694 NM_177816 ENSMUSG00000037833 Sh2d4b A430109M18Rik|D030001E08 SH2 domain containing 4B 0.000000 0.324324 -11.483551 chr5-5 chr5 3001178 3001290 + 330.2 NA Intergenic GSAT_MM|Satellite|Satellite 5883 NR_033692 171266 Mm.377218 NM_134232 Gm4741 Vmn1r-ps4 vomeronasal 1 receptor, G10-like 0.044643 0.362832 -9.524837 chr9-4 chr9 3000007 3000024 + 320.0 NA Intergenic GSAT_MM|Satellite|Satellite 199798 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.000000 0.388889 -19.093134 chr16-2 chr16 90083616 90083772 + 299.7 NA Intergenic (CACAA)n|Simple_repeat|Simple_repeat -25906 NM_011434 20655 Mm.466779 NM_011434 ENSMUSG00000022982 Sod1 B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|MGC107553|SODC|Sod-1 superoxide dismutase 1, soluble 0.000000 0.464968 -5.696009 chrX-1 chrX 138729356 138729361 + 294.6 NA Intergenic Intergenic -88728 NM_001114385 83453 Mm.157697 NM_001114385 ENSMUSG00000031283 Chrdl1 BB139951|CHL|CHL1|Nrln1|VOPT chordin-like 1 0.000000 0.333333 -10000000000.000000 chr9-9 chr9 3030261 3030262 + 289.6 NA Intergenic GSAT_MM|Satellite|Satellite 169552 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.000000 0.500000 -10000000000.000000 chr9-10 chr9 3035864 3035905 + 269.2 NA Intergenic GSAT_MM|Satellite|Satellite 163929 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.024390 0.357143 -7.539511 chr5-12 chr5 3000147 3000152 + 233.7 NA Intergenic GSAT_MM|Satellite|Satellite 6968 NR_033692 171266 Mm.377218 NM_134232 Gm4741 Vmn1r-ps4 vomeronasal 1 receptor, G10-like 0.000000 0.500000 -10000000000.000000 chr1-9 chr1 65103992 65104148 + 233.7 NA intron (NM_010497, intron 3 of 8) intron (NM_010497, intron 3 of 8) 9348 NM_010497 15926 Mm.9925 NM_001111320 ENSMUSG00000025950 Idh1 AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc|MGC115782 isocitrate dehydrogenase 1 (NADP+), soluble 0.012821 0.484076 6.615549 chr18-3 chr18 9503016 9503172 + 223.5 NA Intergenic Intergenic -52946 NM_026484 67974 Mm.376607 NM_026484 ENSMUSG00000024286 Ccny 1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik cyclin Y 0.000000 0.477707 -2.132267 chr14-3 chr14 18210238 18210245 + 223.5 NA Intergenic GSAT_MM|Satellite|Satellite 183042 NM_001024706 432825 Mm.477076 NM_001024706 Gm5458 EG432825 predicted gene 5458 0.000000 0.250000 -10000000000.000000 chr17-4 chr17 5400719 5400875 + 223.5 NA Intergenic Intergenic -4055 NM_027457 70544 Mm.46654 NM_027457 ENSMUSG00000004945 5730437N04Rik 1110008A10Rik|2310046K16Rik RIKEN cDNA 5730437N04 gene 0.019231 0.477707 3.510150 chrM-3 chrM 15364 15520 + 218.4 NA NA Intergenic NA NA 0.006410 0.343949 -4.515931 chr17-5 chr17 75765761 75765917 + 213.4 NA promoter-TSS (NR_033456) promoter-TSS (NR_033456) -243 NR_033456 100043885 Mm.127562 XM_001480347 Gm4710 - predicted gene 4710 0.000000 0.414013 1.179223 chr4-7 chr4 81422426 81422582 + 203.2 NA Intergenic Intergenic -508468 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.012821 0.401274 0.912443 chr9-16 chr9 3026800 3026829 + 188.0 NA Intergenic GSAT_MM|Satellite|Satellite 172999 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.034483 0.333333 -8.325999 chr10-10 chr10 117524698 117524854 + 188.0 NA Intergenic Intergenic -20003 NM_001162904 17245 Mm.442618 NM_001162904 ENSMUSG00000020212 Mdm1 Arrd2|Mdm-1 transformed mouse 3T3 cell double minute 1 0.032051 0.407643 11.446793 chr1-17 chr1 75344608 75344764 + 182.9 NA intron (NM_183022, intron 1 of 9) intron (NM_183022, intron 1 of 9) 11029 NM_183022 241118 Mm.110790 NM_183022 ENSMUSG00000033007 Accn4 Asic4|BNAC4 amiloride-sensitive cation channel 4, pituitary 0.000000 0.547771 1.179223 chr4-10 chr4 69864458 69864462 + 182.9 NA intron (NM_145990, intron 4 of 36) intron (NM_145990, intron 4 of 36) 32268 NM_145990 214444 Mm.379344 NM_145990 ENSMUSG00000039298 Cdk5rap2 2900018K03Rik|MGC38528|an|mKIAA1633 CDK5 regulatory subunit associated protein 2 0.000000 0.400000 -10000000000.000000 chr3-10 chr3 148185358 148185514 + 182.9 NA Intergenic CT-rich|Low_complexity|Low_complexity 706585 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.006410 0.617834 -5.597547 chr4-11 chr4 130322114 130322270 + 182.9 NA Intergenic Intergenic 105732 NM_010769 17180 Mm.271796 NM_010769 ENSMUSG00000040533 Matn1 CMP|Crtm|Mat1|matrilin-1 matrilin 1, cartilage matrix protein 0.006410 0.490446 -4.267028 chr9-21 chr9 3032316 3032349 + 177.8 NA Intergenic GSAT_MM|Satellite|Satellite 167481 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.000000 0.294118 -11.560857 chr13-6 chr13 94942493 94942649 + 177.8 NA intron (NM_009712, intron 4 of 7) intron (NM_009712, intron 4 of 7) 70140 NM_009712 11881 Mm.472255 NM_009712 ENSMUSG00000042082 Arsb 1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1 arylsulfatase B 0.006410 0.503185 1.179223 chr4-13 chr4 124951138 124951294 + 177.8 NA Intergenic Intergenic -41918 NM_001081097 14807 Mm.40896 NM_001081097 ENSMUSG00000001985 Grik3 9630027E11|GluR7-3|Glur-7|Glur7 glutamate receptor, ionotropic, kainate 3 0.000000 0.388535 -2.774579 chr18-9 chr18 9491434 9491590 + 177.8 NA Intergenic Intergenic -41364 NM_026484 67974 Mm.376607 NM_026484 ENSMUSG00000024286 Ccny 1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik cyclin Y 0.006410 0.458599 -1.316373 chr11-11 chr11 93154021 93154177 + 177.8 NA intron (NM_028296, intron 3 of 8) intron (NM_028296, intron 3 of 8) 238720 NM_028296 72605 Mm.342160 NM_028296 ENSMUSG00000056158 Car10 2700029L05Rik|BB085816|Ca10 carbonic anhydrase 10 0.006410 0.382166 -4.346117 chr9-23 chr9 119991314 119991470 + 177.8 NA Intergenic Intergenic -7047 NM_008614 17433 Mm.40461 NM_001039364 ENSMUSG00000032517 Mobp AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645 myelin-associated oligodendrocytic basic protein 0.000000 0.541401 11.709603 chr1-23 chr1 74473160 74473316 + 172.7 NA intron (NM_176972, intron 1 of 25) intron (NM_176972, intron 1 of 25) -2857 NM_001081456 18802 Mm.290731 NM_001081456 ENSMUSG00000026173 Plcd4 4921507K24Rik phospholipase C, delta 4 0.006410 0.382166 -2.106986 chr10-12 chr10 67843434 67843590 + 172.7 NA intron (NM_028491, intron 5 of 7) intron (NM_028491, intron 5 of 7) 93720 NM_028491 73287 Mm.141830 NM_028491 ENSMUSG00000019945 1700040L02Rik - RIKEN cDNA 1700040L02 gene 0.076923 0.503185 -7.559449 chr5-17 chr5 137930832 137930988 + 172.7 NA Intergenic B3|SINE|B2 -16429 NM_145566 231801 Mm.260869 NM_145566 ENSMUSG00000029722 Agfg2 A630095P14Rik|Hrbl|MGC61203|MGC7148|RABR ArfGAP with FG repeats 2 0.012821 0.439490 0.974360 chr6-6 chr6 114327347 114327503 + 167.6 NA Intergenic (CAGGA)n|Simple_repeat|Simple_repeat -36105 NM_008285 15465 Mm.333327 NM_008285 ENSMUSG00000053004 Hrh1 Bphs histamine receptor H1 0.000000 0.496815 -6.082736 chr17-10 chr17 15131896 15132052 + 167.6 NA intron (NM_024203, intron 9 of 10) intron (NM_024203, intron 9 of 10) 30766 NM_024203 67544 Mm.35039 NM_024203 ENSMUSG00000014763 Fam120b 4932442K08Rik|AW049283|AW413338|CCPG|KIAA1838|MGC109687|Pgcc1|mKIAA1838 family with sequence similarity 120, member B 0.019231 0.515924 -5.342815 chr1-28 chr1 81332675 81332831 + 167.6 NA Intergenic Intergenic 376413 NM_172849 241134 Mm.313904 NM_172849 ENSMUSG00000054976 9430031J16Rik Jr6|Kiaa1486|MGC90544 RIKEN cDNA 9430031J16 gene 0.000000 0.312102 -6.442826 chr12-18 chr12 52787177 52787333 + 162.6 NA Intergenic Intergenic -36099 NM_144788 207304 Mm.249391 XM_915167 ENSMUSG00000035247 Hectd1 A630086P08Rik|AI844876|MGC12070|opm HECT domain containing 1 0.019231 0.477707 -2.294811 chr1-30 chr1 75345119 75345275 + 162.6 NA intron (NM_183022, intron 1 of 9) intron (NM_183022, intron 1 of 9) 11540 NM_183022 241118 Mm.110790 NM_183022 ENSMUSG00000033007 Accn4 Asic4|BNAC4 amiloride-sensitive cation channel 4, pituitary 0.000000 0.566879 0.652260 chr9-29 chr9 95045734 95045890 + 157.5 NA Intergenic T-rich|Low_complexity|Low_complexity 170810 NM_018763 54371 Mm.212446 XM_001471695 ENSMUSG00000033350 Chst2 AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st carbohydrate sulfotransferase 2 0.000000 0.394904 -5.409331 chr11-14 chr11 107578291 107578364 + 157.5 NA intron (NM_019431, intron 1 of 3) intron (NM_019431, intron 1 of 3) 32227 NM_019431 54377 Mm.103724 NM_019431 ENSMUSG00000020723 Cacng4 AI413107|AW491861 calcium channel, voltage-dependent, gamma subunit 4 0.027397 0.486486 -5.957065 chr15-5 chr15 38804745 38804901 + 147.3 NA Intergenic (CTGTG)n|Simple_repeat|Simple_repeat -31530 NM_001162494 14368 Mm.4769 NM_001162494 ENSMUSG00000022297 Fzd6 Fz6 frizzled homolog 6 (Drosophila) 0.006410 0.573248 0.916459 chr7-9 chr7 110969185 110969341 + 147.3 NA Intergenic Intergenic -55407 NR_015573 75479 Mm.460324 NR_015573 1700012D14Rik - RIKEN cDNA 1700012D14 gene 0.006410 0.515924 -3.860154 chr15-6 chr15 97109879 97110035 + 147.3 NA intron (NM_172293, intron 3 of 5) intron (NM_172293, intron 3 of 5) -34636 NM_001164602 105827 Mm.480681 NM_001164563 ENSMUSG00000048218 Amigo2 AI415330|AW208913|Ali1 adhesion molecule with Ig like domain 2 0.000000 0.414013 3.158714 chr12-21 chr12 92260294 92260450 + 147.3 NA Intergenic Intergenic -5658 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.012821 0.375796 -1.996658 chr5-29 chr5 135930795 135930951 + 142.2 NA 3' UTR (NM_146002, exon 4 of 4) 3' UTR (NM_146002, exon 4 of 4) 13593 NM_146002 215160 Mm.295438 NM_146002 ENSMUSG00000039917 Rhbdd2 0610011L13Rik|AI480532|MGC18730|Rhbdl7|Usmg1 rhomboid domain containing 2 0.012821 0.522293 -6.103500 chr17-17 chr17 39452657 39452813 + 142.2 NA TTS (NR_030494) TTS (NR_030494) 547 NR_030494 751530 NR_030494 Mir715 Mirn715|mmu-mir-715 microRNA 715 0.115385 0.681529 -0.149414 chr1-39 chr1 157081687 157081843 + 142.2 NA intron (NM_011273, intron 7 of 14) intron (NM_011273, intron 7 of 14) 97897 NM_011273 19775 Mm.266215 NM_011273 ENSMUSG00000026469 Xpr1 Rmc-1|Rmc1|Sxv|Syg1|XR xenotropic and polytropic retrovirus receptor 1 0.006410 0.407643 -3.746244 chr5-34 chr5 136811240 136811396 + 137.2 NA intron (NM_198602, intron 1 of 22) intron (NM_198602, intron 1 of 22) 40714 NM_198602 13047 Mm.320317 NM_009986 ENSMUSG00000029705 Cux1 AA407197|CDP|Cutl1|Cux|Cux-1|KIAA4047|MGC102214|Phox2|mKIAA4047 cut-like homeobox 1 0.006410 0.515924 -2.528917 chr5-35 chr5 144437835 144437850 + 137.2 NA intron (NM_001081109, intron 13 of 13) intron (NM_001081109, intron 13 of 13) -5970 NM_010800 17341 Mm.386767 NM_010800 ENSMUSG00000052271 Bhlha15 1810009C13Rik|Bhlhb8|Mist1 basic helix-loop-helix family, member a15 0.000000 0.562500 -21.820644 chr1-41 chr1 39444260 39444416 + 137.2 NA Intergenic (TACTG)n|Simple_repeat|Simple_repeat -21045 NM_018775 54610 Mm.387293 NM_018775 ENSMUSG00000003134 Tbc1d8 AD3|HBLP1|VRP TBC1 domain family, member 8 0.006410 0.547771 -0.800221 chr7-14 chr7 46373108 46373264 + 137.2 NA intron (NM_013789, intron 10 of 10) intron (NM_013789, intron 10 of 10) 108648 NM_001112739 16502 Mm.249386 NM_001112739 ENSMUSG00000058975 Kcnc1 C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw potassium voltage gated channel, Shaw-related subfamily, member 1 0.006410 0.503185 -7.199300 chr5-30 chr5 4545514 4545670 + 137.2 NA Intergenic Intergenic 218630 NM_021457 14362 Mm.246003 NM_021457 ENSMUSG00000044674 Fzd1 AW227548|FZ-1 frizzled homolog 1 (Drosophila) 0.019231 0.471338 -2.048970 chr12-23 chr12 102947719 102947875 + 137.2 NA Intergenic Intergenic -8221 NM_007693 12652 Mm.4137 NM_007693 ENSMUSG00000021194 Chga - chromogranin A 0.000000 0.515924 3.723897 chr18-15 chr18 5681585 5681741 + 132.1 NA intron (NM_011546, intron 1 of 7) intron (NM_011546, intron 1 of 7) -89228 NR_033552 791318 Mm.84339 NR_033552 Gm10125 ENSMUSG00000063087 predicted gene 10125 0.006410 0.509554 -5.763183 chr3-21 chr3 9804581 9804737 + 132.1 NA intron (NM_053182, intron 1 of 7) intron (NM_053182, intron 1 of 7) 11503 NM_053182 94212 Mm.214484 NM_001195031 ENSMUSG00000027508 Pag1 Cbp|F730007C19Rik|Pag phosphoprotein associated with glycosphingolipid microdomains 1 0.006410 0.592357 -6.587990 chr9-37 chr9 36560582 36560738 + 132.1 NA Intergenic (TTCTG)n|Simple_repeat|Simple_repeat -13921 NM_007915 13663 Mm.4337 NM_007915 ENSMUSG00000062762 Ei24 AA536736|AI115355|PIG8 etoposide induced 2.4 mRNA 0.006410 0.458599 -1.362450 chr9-40 chr9 96917963 96918119 + 132.1 NA intron (NM_138756, intron 1 of 6) intron (NM_138756, intron 1 of 6) 2352 NM_138756 192287 Mm.475433 NM_138756 ENSMUSG00000032449 Slc25a36 C330005L02Rik solute carrier family 25, member 36 0.000000 0.292994 -2.416046 chr4-28 chr4 99634016 99634172 + 127.0 NA intron (NM_013845, intron 1 of 8) intron (NM_013845, intron 1 of 8) 40372 NM_013845 26563 Mm.480366 NM_013845 ENSMUSG00000035305 Ror1 2810404D04Rik|Ntrkr1|mRor1 receptor tyrosine kinase-like orphan receptor 1 0.006410 0.484076 -1.379052 chr1-48 chr1 161566102 161566258 + 127.0 NA intron (NM_022312, intron 1 of 22) intron (NM_022312, intron 1 of 22) 205735 NM_022312 21960 Mm.444966 NM_022312 ENSMUSG00000015829 Tnr J1-tenascin|TN-R|janusin|restrictin tenascin R 0.025641 0.490446 -2.215896 chr1-46 chr1 90310470 90310626 + 127.0 NA Intergenic B4|SINE|B4 30689 NM_008132 14659 Mm.5187 NM_008132 ENSMUSG00000062310 Glrp1 GRP-1 glutamine repeat protein 1 0.032051 0.496815 -8.878068 chr9-44 chr9 71122500 71122656 + 127.0 NA Intergenic (CTGTG)n|Simple_repeat|Simple_repeat 108230 NM_009022 19378 Mm.42016 NM_009022 ENSMUSG00000013584 Aldh1a2 AV116159|Aldh1a7|Raldh1|Raldh2 aldehyde dehydrogenase family 1, subfamily A2 0.000000 0.592357 -10.349071 chr6-22 chr6 72815722 72815878 + 127.0 NA intron (NM_019715, intron 1 of 6) intron (NM_019715, intron 1 of 6) 13688 NM_019715 74287 Mm.29194 XM_001477544 ENSMUSG00000055239 Kcmf1 1700094M07Rik|Debt91|Pmcf potassium channel modulatory factor 1 0.000000 0.509554 -4.381211 chr3-25 chr3 88528876 88529032 + 127.0 NA intron (NM_001163489, intron 10 of 14) intron (NM_001163489, intron 10 of 14) 12734 NM_013658 20351 Mm.439752 NM_001163489 ENSMUSG00000028064 Sema4a AI132332|SemB|Semab sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 0.012821 0.490446 2.804026 chr9-43 chr9 64357399 64357555 + 127.0 NA intron (NM_001134399, intron 5 of 24) intron (NM_001134399, intron 5 of 24) 173846 NM_001134399 214058 Mm.405602 NM_001134399 ENSMUSG00000036466 Megf11 2410080H04Rik|D130061K05 multiple EGF-like-domains 11 0.000000 0.433121 -0.344404 chr1-50 chr1 37528791 37528947 + 121.9 NA Intergenic Intergenic -48064 NM_173870 269181 Mm.447744 NM_173870 ENSMUSG00000026110 Mgat4a 9530018I07Rik|GnT-IVa mannoside acetylglucosaminyltransferase 4, isoenzyme A 0.006410 0.433121 -4.579487 chr16-12 chr16 87399193 87399349 + 121.9 NA Intergenic (CAGTA)n|Simple_repeat|Simple_repeat -14206 NM_009840 12469 Mm.328673 NM_009840 ENSMUSG00000025613 Cct8 AI132397|Cctq|Tcpq chaperonin containing Tcp1, subunit 8 (theta) 0.006410 0.414013 -5.384298 chr5-41 chr5 65716298 65716454 + 121.9 NA Intergenic Intergenic -1399 NM_009466 22235 Mm.344831 NM_009466 ENSMUSG00000029201 Ugdh Udpgdh UDP-glucose dehydrogenase 0.038462 0.458599 -2.461167 chr5-46 chr5 149387966 149388122 + 121.9 NA Intergenic Intergenic -24658 NM_010439 15289 Mm.313345 NM_010439 ENSMUSG00000066551 Hmgb1 DEF|HMG-1|Hmg1|MGC103168|MGC103169|MGC117896|MGC117897|SBP-1|amphoterin|p30 high mobility group box 1 0.006410 0.471338 -0.275805 chr1-51 chr1 51169907 51170063 + 121.9 NA Intergenic Intergenic -63685 NM_138741 20324 Mm.480575 NM_138741 ENSMUSG00000045954 Sdpr - serum deprivation response 0.019231 0.477707 0.532637 chr16-18 chr16 94653373 94653529 + 116.8 NA Intergenic Intergenic -18024 NM_007834 13185 Mm.7472 NM_007834 ENSMUSG00000022898 Dscr3 AW538125|Dcra|MGC5833 Down syndrome critical region gene 3 0.025641 0.484076 -1.660602 chr8-30 chr8 65146164 65146320 + 116.8 NA Intergenic Intergenic -130982 NM_011922 26359 Mm.42179 NM_001136089 ENSMUSG00000031635 Anxa10 MGC159022 annexin A10 0.000000 0.445860 -5.696009 chr16-19 chr16 94850557 94850713 + 116.8 NA Intergenic (CACAG)n|Simple_repeat|Simple_repeat 114853 NM_001025590 16522 Mm.328720 NM_001025584 ENSMUSG00000043301 Kcnj6 BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv potassium inwardly-rectifying channel, subfamily J, member 6 0.019231 0.547771 0.573817 chr11-28 chr11 65841147 65841303 + 116.8 NA intron (NM_001099633, intron 35 of 68) intron (NM_001099633, intron 35 of 68) 143521 NM_001099633 237806 Mm.459279 XM_110968 ENSMUSG00000056752 Dnahc9 9030022M04|A230091C01|C230051G16|D11Ertd686e|DNAH9|KIAA0357|mKIAA0357 dynein, axonemal, heavy chain 9 0.000000 0.433121 -0.370920 chr13-16 chr13 34215591 34215747 + 116.8 NA intron (NM_001033167, intron 4 of 10) intron (NM_001033167, intron 4 of 10) 45228 NM_001110515 69666 Mm.24788 XM_884663 ENSMUSG00000071451 Psmg4 2310047M15Rik proteasome (prosome, macropain) assembly chaperone 4 0.012821 0.369427 -2.546865 chr17-25 chr17 20161353 20161509 + 116.8 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat 24502 NM_001104570 627805 Mm.469853 NM_001104570 Vmn2r108 EG627805 vomeronasal 2, receptor 108 0.000000 0.382166 -5.869539 chr3-29 chr3 8623588 8623744 + 116.8 NA Intergenic Intergenic 26445 NM_010423 15213 Mm.29581 NM_010423 ENSMUSG00000040289 Hey1 AI316788|AI414254|HRT1|Herp2|Hesr1|bHLHb31|hesr-1 hairy/enhancer-of-split related with YRPW motif 1 0.000000 0.401274 -3.317630 chr1-58 chr1 81137151 81137307 + 116.8 NA intron (NM_172849, intron 4 of 4) intron (NM_172849, intron 4 of 4) 180889 NM_172849 241134 Mm.313904 NM_172849 ENSMUSG00000054976 9430031J16Rik Jr6|Kiaa1486|MGC90544 RIKEN cDNA 9430031J16 gene 0.000000 0.382166 -4.143516 chr17-24 chr17 8256121 8256277 + 116.8 NA exon (NM_001161832, exon 9 of 11) exon (NM_001161832, exon 9 of 11) -16397 NM_009309 20997 Mm.913 NM_009309 ENSMUSG00000062327 T Bra|D17Mit170|Low|Lr|T1|Tl2|Tl3|cou|me75 brachyury 0.012821 0.484076 -2.140832 chr2-36 chr2 61681163 61681319 + 116.8 NA Intergenic (TTCTG)n|Simple_repeat|Simple_repeat 75950 NM_009322 21375 Mm.404741 NM_009322 ENSMUSG00000035033 Tbr1 - T-box brain gene 1 0.000000 0.458599 -5.535217 chr18-21 chr18 12650902 12651058 + 116.8 NA intron (NM_010680, intron 39 of 74) intron (NM_010680, intron 39 of 74) -135721 NM_028341 72747 Mm.52526 NM_028341 ENSMUSG00000024424 Ttc39c 1700008N02Rik|2810439F02Rik tetratricopeptide repeat domain 39C 0.019231 0.541401 -4.241481 chr9-47 chr9 3830381 3830537 + 116.8 NA intron (NM_001033322, intron 6 of 7) intron (NM_001033322, intron 6 of 7) 298106 NM_001033322 234889 Mm.435507 NM_001033322 ENSMUSG00000041624 Gucy1a2 9430053E15 guanylate cyclase 1, soluble, alpha 2 0.006410 0.343949 -4.925023 chr9-51 chr9 3016009 3016165 + 111.8 NA Intergenic GSAT_MM|Satellite|Satellite 183726 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.019231 0.343949 -7.580577 chr9-54 chr9 24292424 24292427 + 111.8 NA Intergenic SYNREP_MM|Satellite|Satellite -38878 NM_172920 244745 Mm.38526 NM_172920 ENSMUSG00000043067 Dpy19l1 1100001I19Rik|6030402K12|AI225861|AW558481 dpy-19-like 1 (C. elegans) 0.000000 0.500000 -10000000000.000000 chr5-54 chr5 43434551 43434707 + 111.8 NA Intergenic Intergenic -87081 NM_175937 231207 Mm.7233 NM_001177379 ENSMUSG00000039782 Cpeb2 A630055H10Rik cytoplasmic polyadenylation element binding protein 2 0.006410 0.426752 -1.838325 chr1-67 chr1 51941257 51941413 + 111.8 NA Intergenic Intergenic -11453 NM_011487 20849 Mm.1550 NM_011487 ENSMUSG00000062939 Stat4 - signal transducer and activator of transcription 4 0.000000 0.490446 -3.407388 chr9-52-Dup1 chr9 3019059 3019065 + 111.8 NA Intergenic GSAT_MM|Satellite|Satellite 180751 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.000000 0.571429 -10000000000.000000 chr4-41 chr4 96558744 96558900 + 111.8 NA Intergenic L1_Mus4|LINE|L1 -281644 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 OTTMUSG00000008003 predicted gene 12695 0.006410 0.375796 -5.560645 chr9-52 chr9 3018909 3018913 + 111.8 NA Intergenic GSAT_MM|Satellite|Satellite 180902 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.000000 0.200000 -10000000000.000000 chr5-57 chr5 139711347 139711380 + 111.8 NA intron (NM_028469, intron 1 of 4) intron (NM_028469, intron 1 of 4) 2813 NM_028469 73212 Mm.84294 NM_028469 ENSMUSG00000053553 3110082I17Rik AW411904 RIKEN cDNA 3110082I17 gene 0.030303 0.529412 -5.369615 chr9-54-Dup1 chr9 24292573 24292580 + 111.8 NA Intergenic Intergenic -39029 NM_172920 244745 Mm.38526 NM_172920 ENSMUSG00000043067 Dpy19l1 1100001I19Rik|6030402K12|AI225861|AW558481 dpy-19-like 1 (C. elegans) 0.000000 0.375000 -10000000000.000000 chr17-30 chr17 46747659 46747815 + 111.8 NA intron (NM_001097623, intron 4 of 18) intron (NM_001097623, intron 4 of 18) 54317 NM_172622 224829 Mm.260989 NM_001097623 ENSMUSG00000064043 Trerf1 9430096I18Rik|AI429294|B830015H24|MGC118525|RAPA|Trep-132|Trep132 transcriptional regulating factor 1 0.038462 0.477707 -2.995518 chr4-40 chr4 81397253 81397409 + 111.8 NA Intergenic Intergenic -483295 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.019231 0.452229 10.102981 chr9-55 chr9 31771129 31771285 + 111.8 NA Intergenic Intergenic -94493 NM_177379 330914 Mm.426933 NM_177379 ENSMUSG00000041444 Arhgap32 3426406O18Rik|GC-GAP|Grit|KIAA0712|PX-RICS|Rics|mKIAA0712|p200RhoGAP|p250GAP Rho GTPase activating protein 32 0.006410 0.490446 0.050766 chr9-60 chr9 3000917 3001073 + 106.7 NA Intergenic GSAT_MM|Satellite|Satellite 198818 NR_027988 114673 Mm.422774 NR_027988 4930433N12Rik - RIKEN cDNA 4930433N12 gene 0.032051 0.388535 -7.539511 chr1-73 chr1 61982976 61983132 + 106.7 NA intron (NM_001081050, intron 3 of 22) intron (NM_001081050, intron 3 of 22) 409955 NM_001081050 72823 Mm.441881 NM_001081050 ENSMUSG00000052062 Pard3b 1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta|RP23-20G7.1 par-3 partitioning defective 3 homolog B (C. elegans) 0.012821 0.490446 -7.244906 chr9-63 chr9 47467759 47467915 + 106.7 NA intron (NM_001025600, intron 1 of 8) intron (NM_001025600, intron 1 of 8) 186491 NM_018770 54725 Mm.234832 NM_001025600 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 cell adhesion molecule 1 0.000000 0.407643 0.249862 chr18-26 chr18 78298262 78298418 + 106.7 NA intron (NM_001171011, intron 1 of 8) intron (NM_001171011, intron 1 of 8) 5855 NM_001171011 108052 Mm.33832 NM_001171010 ENSMUSG00000059336 Slc14a1 2610507K20Rik|3021401A05Rik|UT-B|Utb1 solute carrier family 14 (urea transporter), member 1 0.012821 0.496815 -3.872824 chr15-18 chr15 83306069 83306225 + 106.7 NA Intergenic Intergenic -13775 NM_001159509 23970 Mm.23978 NM_001159509 ENSMUSG00000016664 Pacsin2 AI197433 protein kinase C and casein kinase substrate in neurons 2 0.006410 0.515924 -2.111759 chr8-36 chr8 127463018 127463174 + 106.7 NA intron (NM_023709, intron 1 of 19) intron (NM_023709, intron 1 of 19) 896 NM_023709 73647 Mm.6209 NM_023709 ENSMUSG00000031981 Capn9 2200003B16Rik|GC36|nCL-4|nCL4 calpain 9 0.000000 0.566879 3.901413 chr6-27 chr6 82981155 82981311 + 106.7 NA intron (NM_033079, intron 7 of 9) intron (NM_033079, intron 7 of 9) 17896 NM_010070 13448 Mm.156 NM_010070 ENSMUSG00000068335 Dok1 AW557123|p62DOK docking protein 1 0.000000 0.363057 -0.699549 chr12-43 chr12 105982522 105982678 + 106.7 NA intron (NM_009747, intron 1 of 2) intron (NM_009747, intron 1 of 2) 18379 NM_009747 12062 Mm.390475 NM_009747 ENSMUSG00000021070 Bdkrb2 B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2 bradykinin receptor, beta 2 0.012821 0.445860 -3.931009 chr7-19 chr7 109636187 109636343 + 106.7 NA intron (NM_020052, intron 5 of 21) intron (NM_020052, intron 5 of 21) 20591 NM_020052 56788 Mm.40447 NM_020052 ENSMUSG00000007279 Scube2 4932442O19Rik|Cegf1|Cegp1|ICRFP703B1614Q5.1 signal peptide, CUB domain, EGF-like 2 0.000000 0.585987 -4.763052 chr12-38 chr12 87414448 87414604 + 106.7 NA Intergenic Intergenic 103780 NM_011934 26380 Mm.235550 NM_001159500 ENSMUSG00000021255 Esrrb Err2|Errb|Estrrb|Nr3b2 estrogen related receptor, beta 0.006410 0.554140 -5.371320 chr16-25 chr16 94723582 94723738 + 106.7 NA intron (NM_007890, intron 2 of 11) intron (NM_007890, intron 2 of 11) 43956 NM_001113389 13548 Mm.310973 NM_001113389 ENSMUSG00000022897 Dyrk1a 2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|MGC150253|MGC150254|Mnbh|Mp86|mmb dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a 0.000000 0.535032 1.934122 chr10-35 chr10 93559486 93559642 + 101.6 NA intron (NM_053072, intron 14 of 20) intron (NM_053072, intron 14 of 20) -18165 NM_011629 22025 Mm.107483 NM_011629 ENSMUSG00000005897 Nr2c1 4831444H07Rik|80.3|Eenr|TR2|Tr2-11 nuclear receptor subfamily 2, group C, member 1 0.006410 0.445860 0.916459 chr13-21 chr13 46108312 46108468 + 101.6 NA Intergenic Intergenic -132442 NM_009124 20238 Mm.476983 NM_009124 ENSMUSG00000046876 Atxn1 Ataxin-1|Atx1|C85907|Sca1 ataxin 1 0.006410 0.477707 2.179802 chr15-20 chr15 82659532 82659688 + 101.6 NA intron (NM_013836, intron 2 of 4) intron (NM_013836, intron 2 of 4) -37599 NM_029562 76279 Mm.439931 NM_029562 ENSMUSG00000022445 Cyp2d26 1300006E06Rik cytochrome P450, family 2, subfamily d, polypeptide 26 0.000000 0.490446 -1.947621 chr17-39 chr17 45061458 45061614 + 101.6 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 3960 NM_001177470 653016 Mm.45676 XM_001000918 Gm7325 EG653016|Esgp predicted gene 7325 0.006410 0.496815 -6.080161 chr10-30 chr10 13678524 13678680 + 101.6 NA intron (NM_010437, intron 1 of 8) intron (NM_010437, intron 1 of 8) 22026 NM_010437 15273 Mm.42157 NM_010437 ENSMUSG00000015501 Hivep2 MIBP1|Schnurri-2|Shn-2 human immunodeficiency virus type I enhancer binding protein 2 0.032051 0.426752 5.555216 chr4-48 chr4 152962671 152962827 + 101.6 NA intron (NM_011642, intron 1 of 13) intron (NM_011642, intron 1 of 13) 21259 NM_011642 22062 Mm.78015 NM_001126330 ENSMUSG00000029026 Trp73 Tp73|p73 transformation related protein 73 0.025641 0.598726 2.311639 chr1-79 chr1 82348152 82348308 + 101.6 NA intron (NM_007735, intron 41 of 47) intron (NM_007735, intron 41 of 47) 117643 NM_007735 12829 Mm.479772 NM_007735 ENSMUSG00000067158 Col4a4 E130010M05Rik|[a]4(IV) collagen, type IV, alpha 4 0.012821 0.528662 -3.795892 chrUn_random-1 chrUn_random 1183397 1183553 + 96.5 NA Intergenic Intergenic -9019 NM_177389 338366 Mm.41152 NM_177389 Mia3 9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|KIAA0268|Tango melanoma inhibitory activity 3 NA NA chr7-29 chr7 114114019 114114175 + 96.5 NA intron (NR_029437, intron 1 of 3) intron (NR_029437, intron 1 of 3) -46800 NM_011965 26440 Mm.121265 NM_011965 ENSMUSG00000030751 Psma1 C2|alpha-type proteasome (prosome, macropain) subunit, alpha type 1 0.012821 0.503185 2.635792 chr13-26 chr13 94943063 94943219 + 96.5 NA intron (NM_009712, intron 4 of 7) intron (NM_009712, intron 4 of 7) 70710 NM_009712 11881 Mm.472255 NM_009712 ENSMUSG00000042082 Arsb 1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1 arylsulfatase B 0.000000 0.496815 1.179224 chr12-54 chr12 117837706 117837862 + 96.5 NA Intergenic Intergenic -120703 NM_175930 217944 Mm.227642 NM_175930 ENSMUSG00000041992 Rapgef5 4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef Rap guanine nucleotide exchange factor (GEF) 5 0.000000 0.515924 -5.468716 chr7-27 chr7 84632638 84632794 + 96.5 NA Intergenic Intergenic -77180 NM_022985 65098 Mm.397115 NM_022985 ENSMUSG00000030629 Zfand6 3110005P07Rik|Awp1|Za20d3 zinc finger, AN1-type domain 6 0.012821 0.407643 -5.770833 chr4-49 chr4 24814525 24814681 + 96.5 NA intron (NM_001163020, intron 4 of 10) intron (NM_001163020, intron 4 of 10) 127113 NM_001163020 212390 Mm.464241 NM_001033531 ENSMUSG00000040387 Klhl32 6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900 kelch-like 32 (Drosophila) 0.012821 0.464968 -3.113144 chr2-57 chr2 120783698 120783854 + 96.5 NA Intergenic Intergenic -6576 NM_028799 74176 Mm.20187 NM_028799 ENSMUSG00000053675 Tgm5 2310007C07Rik|MGC143848|MGC143849|TGMX|TGx transglutaminase 5 0.012821 0.573248 3.696308 chr12-52 chr12 99913719 99913875 + 96.5 NA Intergenic Intergenic -62673 NM_183186 71375 Mm.480620 XM_001473733 ENSMUSG00000033713 Foxn3 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1|MGC107530|MGC36260 forkhead box N3 0.006410 0.509554 -1.699619 chr10-41 chr10 80341290 80341446 + 96.5 NA Intergenic Intergenic 8149 NM_008655 17873 Mm.1360 NM_008655 ENSMUSG00000015312 Gadd45b AI323528|Myd118 growth arrest and DNA-damage-inducible 45 beta 0.006410 0.375796 -3.140544 chr5-80 chr5 113387121 113387277 + 96.5 NA intron (NM_172884, intron 1 of 7) intron (NM_172884, intron 1 of 7) 16417 NM_172884 243219 Mm.160131 NM_172884 ENSMUSG00000051339 2900026A02Rik 8430408O14Rik|A530094D01|AW539426|Gm449|KIAA1671|mKIAA1671 RIKEN cDNA 2900026A02 gene 0.006410 0.490446 -4.629755 chr10-38 chr10 42691551 42691707 + 96.5 NA 3' UTR (NM_175407, exon 7 of 7) 3' UTR (NM_175407, exon 7 of 7) 142703 NM_172938 268297 Mm.98731 NM_172938 ENSMUSG00000044770 Scml4 9330161D17|MGC49264|mFLJ00197 sex comb on midleg-like 4 (Drosophila) 0.025641 0.490446 -7.005575 chr3-42 chr3 157665139 157665295 + 96.5 NA Intergenic Intergenic 163033 NM_011196 19218 Mm.30424 NM_011196 ENSMUSG00000040016 Ptger3 EP3|Pgerep3|Ptgerep3 prostaglandin E receptor 3 (subtype EP3) 0.000000 0.420382 -3.347149 chr5-74 chr5 78742077 78742233 + 96.5 NA Intergenic Intergenic -155632 NR_027806 231332 Mm.373616 NR_027806 Pea15b - phosphoprotein enriched in astrocytes 15B 0.006410 0.458599 2.029446 chr4-52 chr4 100394238 100394394 + 96.5 NA intron (NM_198037, intron 2 of 26) intron (NM_198037, intron 2 of 26) 119706 NM_198037 320508 Mm.151962 NM_198037 ENSMUSG00000028532 Cachd1 1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573 cache domain containing 1 0.006410 0.477707 1.095595 chr5-81 chr5 114743780 114743936 + 96.5 NA Intergenic Intergenic 38554 NM_023556 17855 Mm.28088 NM_023556 ENSMUSG00000041939 Mvk 2310010A05Rik|AI256848|AI414037|MK mevalonate kinase 0.044872 0.560510 2.219957 chr4-57 chr4 87361794 87361950 + 91.4 NA intron (NM_027326, intron 2 of 10) intron (NM_027326, intron 2 of 10) -84327 NM_029931 70122 Mm.288898 NM_027326 ENSMUSG00000028496 Mllt3 2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 0.000000 0.649682 -5.992285 chr9-78 chr9 58646783 58646939 + 91.4 NA intron (NM_001081192, intron 2 of 7) intron (NM_001081192, intron 2 of 7) 25213 NM_001081192 330953 Mm.151967 NM_001081192 ENSMUSG00000032338 Hcn4 Bcng3|Hcn3 hyperpolarization-activated, cyclic nucleotide-gated K+ 4 0.025641 0.509554 -6.558218 chr19-5 chr19 26142122 26142278 + 91.4 NA Intergenic T-rich|Low_complexity|Low_complexity 402693 NM_145831 226049 Mm.275572 NM_145831 ENSMUSG00000048138 Dmrt2 Terra doublesex and mab-3 related transcription factor 2 0.006410 0.496815 -8.370901 chr5-90 chr5 124115286 124115442 + 91.4 NA Intergenic Intergenic 10763 NM_030701 80885 Mm.440567 NM_030701 ENSMUSG00000045502 Niacr1 Gpr109a|Gpr109b|HM74|PUMA-G|Pumag|mHM74b niacin receptor 1 0.012821 0.490446 -7.208143 chr2-67 chr2 108711026 108711182 + 91.4 NA Intergenic Intergenic 368025 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mett5d1 0610027B03Rik|AI303697|AW049952|MGC118452 methyltransferase 5 domain containing 1 0.006410 0.369427 -6.391222 chr1-90 chr1 79638531 79638687 + 91.4 NA intron (NM_001111279, intron 1 of 11) intron (NM_001111279, intron 1 of 11) 2184 NM_001111279 69368 Mm.293273 NM_001111279 ENSMUSG00000073643 Wdfy1 1700013B03Rik|1700120F24Rik|FENS-1|Jr1|KIAA1435|WDF1|ZFYVE17|mKIAA1435 WD repeat and FYVE domain containing 1 0.012821 0.382166 -0.001613 chr18-36 chr18 47280478 47280634 + 91.4 NA Intergenic Intergenic 196350 NM_178377 69456 Mm.210734 NM_178377 ENSMUSG00000042705 Commd10 2310003A05Rik|AU019438|DRWMS2 COMM domain containing 10 0.006410 0.503185 -5.156691 chr11-52 chr11 113030953 113031109 + 91.4 NA Intergenic Intergenic -13103 NR_015556 72386 Mm.266961 XM_001472535 2610035D17Rik - RIKEN cDNA 2610035D17 gene 0.019231 0.420382 -1.472442 chr19-8 chr19 58402527 58402683 + 91.4 NA intron (NM_010279, intron 4 of 9) intron (NM_010279, intron 4 of 9) 105111 NM_010279 14585 Mm.88367 NM_010279 ENSMUSG00000025089 Gfra1 AU042498 glial cell line derived neurotrophic factor family receptor alpha 1 0.012821 0.535032 -2.084324 chr5-85 chr5 15246055 15246211 + 91.4 NA Intergenic Intergenic 53600 NR_001585 75858 Mm.382859 NR_001585 Speer7-ps1 4930568L21Rik|SPEER-7|Speer7-ps spermatogenesis associated glutamate (E)-rich protein 7, pseudogene 1 0.000000 0.343949 -2.634582 chr8-54 chr8 71855697 71855853 + 91.4 NA Intergenic Intergenic 46232 NM_008509 16956 Mm.1514 NM_008509 ENSMUSG00000015568 Lpl - lipoprotein lipase 0.012821 0.433121 0.112443 chr1-94 chr1 172858888 172859044 + 91.4 NA intron (NM_144559, intron 3 of 4) intron (NM_144559, intron 3 of 4) 3366 NM_144559 246256 Mm.251254 NM_144559 ENSMUSG00000059089 Fcgr4 4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3 Fc receptor, IgG, low affinity IV 0.012821 0.401274 -7.157225 chr3-44 chr3 101636444 101636600 + 91.4 NA Intergenic Intergenic 97196 NM_144900 11928 Mm.280103 NM_144900 ENSMUSG00000033161 Atp1a1 Atpa-1|BC010319|MGC38419 ATPase, Na+/K+ transporting, alpha 1 polypeptide 0.032051 0.541401 10.089582 chr7-34 chr7 99711630 99711786 + 91.4 NA TTS (NM_025668) TTS (NM_025668) -9208 NM_016720 50877 Mm.103703 NM_016720 ENSMUSG00000035239 Neu3 - neuraminidase 3 0.006410 0.394904 4.865302 chr8-56 chr8 97251838 97251994 + 91.4 NA intron (NM_019415, intron 24 of 24) intron (NM_019415, intron 24 of 24) -23712 NM_022331 64209 Mm.29151 NM_022331 ENSMUSG00000031770 Herpud1 Herp|Mifl|SUP homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.000000 0.503185 -8.237086 chr2-65 chr2 70617513 70617669 + 91.4 NA intron (NM_172664, intron 1 of 19) intron (NM_172664, intron 1 of 19) 8728 NM_172664 228012 Mm.136511 NM_172664 ENSMUSG00000041997 Tlk1 4930545J15Rik tousled-like kinase 1 0.000000 0.414013 -3.306578 chr12-56 chr12 105950116 105950272 + 91.4 NA Intergenic Intergenic -14027 NM_009747 12062 Mm.390475 NM_009747 ENSMUSG00000021070 Bdkrb2 B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2 bradykinin receptor, beta 2 0.006410 0.560510 6.340365 chr14-14 chr14 33909470 33909626 + 86.4 NA intron (NM_008166, intron 4 of 15) intron (NM_008166, intron 4 of 15) 185848 NR_029774 723847 NR_029774 Mir346 Mirn346|mmu-mir-346 microRNA 346 0.012821 0.509554 3.558890 chr1-105 chr1 122482780 122482781 + 86.4 NA Intergenic Intergenic 52748 NM_010133 13798 Mm.2657 NM_010133 ENSMUSG00000058665 En1 En-1|Mo-en.1 engrailed 1 0.000000 0.500000 -10000000000.000000 chr9-90 chr9 70422518 70422674 + 86.4 NA intron (NM_172772, intron 5 of 8) intron (NM_172772, intron 5 of 8) 33742 NM_172772 235461 Mm.170855 NM_172772 ENSMUSG00000042444 Fam63b AI465301|B230380D07Rik|KIAA1164|mKIAA1164 family with sequence similarity 63, member B 0.000000 0.566879 0.652260 chr4-63 chr4 40926884 40927040 + 86.4 NA exon (NM_021535, exon 11 of 12) exon (NM_021535, exon 11 of 12) 15362 NM_001164672 15502 Mm.471544 NM_001164671 ENSMUSG00000028410 Dnaja1 Hsj2|Nedd7 DnaJ (Hsp40) homolog, subfamily A, member 1 0.025641 0.515924 3.198231 chr10-52 chr10 80317388 80317436 + 86.4 NA intron (NM_010722, intron 1 of 11) intron (NM_010722, intron 1 of 11) 3962 NM_010722 16907 Mm.7362 NM_010722 ENSMUSG00000062075 Lmnb2 - lamin B2 0.020833 0.653061 -3.787096 chr1-105-Dup1 chr1 122482927 122482936 + 86.4 NA Intergenic Intergenic 52899 NM_010133 13798 Mm.2657 NM_010133 ENSMUSG00000058665 En1 En-1|Mo-en.1 engrailed 1 0.000000 0.100000 -10000000000.000000 chr9-91 chr9 70741995 70742151 + 86.4 NA Intergenic Intergenic -8048 NM_008280 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl lipase, hepatic 0.012821 0.503185 -1.015024 chr12-60 chr12 111135882 111136038 + 86.4 NA Intergenic Intergenic -5534 NM_025488 66323 Mm.273316 XM_286464 ENSMUSG00000056508 1700001K19Rik MGC58197 RIKEN cDNA 1700001K19 gene 0.006410 0.452229 -3.072594 chr17-52 chr17 72371288 72371444 + 86.4 NA intron (NM_007439, intron 1 of 28) intron (NM_007439, intron 1 of 28) 137798 NM_007439 11682 Mm.311854 NM_007439 ENSMUSG00000055471 Alk CD246|Tcrz anaplastic lymphoma kinase 0.006410 0.356688 -7.997917 chr4-67 chr4 95445515 95445671 + 86.4 NA Intergenic RMER16-int|LTR|ERVK -13803 NM_030014 77963 Mm.49994 NM_030014 ENSMUSG00000028572 Hook1 A930033L17Rik|azh hook homolog 1 (Drosophila) 0.000000 0.331210 -3.567814 chr17-50 chr17 49582120 49582276 + 86.4 NA intron (NM_181397, intron 2 of 9) intron (NM_181397, intron 2 of 9) 73866 NM_181397 76438 Mm.41854 NM_181397 ENSMUSG00000039316 Rftn1 2310015N21Rik|AI853526 raftlin lipid raft linker 1 0.006410 0.490446 4.296466 chr7-37 chr7 24627688 24627844 + 86.4 NA intron (NM_001130150, intron 14 of 30) intron (NM_001130150, intron 14 of 30) 14661 NM_001130152 16801 Mm.3181 NM_001130150 ENSMUSG00000040940 Arhgef1 Lbcl2|Lsc Rho guanine nucleotide exchange factor (GEF) 1 0.006410 0.592357 -4.423164 chr1-101 chr1 79968608 79968764 + 86.4 NA Intergenic Intergenic 124282 NM_173425 241128 Mm.145511 NM_173425 ENSMUSG00000043230 Fam124b A830043J08Rik family with sequence similarity 124, member B 0.000000 0.350318 3.325009 chr5-97 chr5 112175846 112176002 + 86.4 NA Intergenic Intergenic 293327 NR_033657 330166 Mm.44854 XM_489103 Miat 3632434I06|A230057G18Rik|Rncr2|gomafu myocardial infarction associated transcript (non-protein coding) 0.012821 0.611465 -6.766540 chr7-39 chr7 121232956 121233112 + 86.4 NA intron (NM_001081327, intron 1 of 1) intron (NM_001081327, intron 1 of 1) 49591 NM_001081327 195646 Mm.247449 NM_001081327 ENSMUSG00000046321 Hs3st2 6430516N12Rik|A830061E14Rik|AW491345 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 0.006410 0.547771 -3.222712 chr4-70 chr4 105318197 105318353 + 86.4 NA Intergenic Intergenic -495869 NM_183225 329908 Mm.234544 XM_001473472 ENSMUSG00000028514 Usp24 2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851 ubiquitin specific peptidase 24 0.019231 0.433121 -2.599948 chr5-94 chr5 72720388 72720442 + 86.4 NA intron (NM_001122756, intron 3 of 21) intron (NM_001122756, intron 3 of 21) 62928 NM_016869 53419 Mm.332425 NM_001122756 ENSMUSG00000005220 Corin AV273130|Lrp4|MGC118735 corin 0.055556 0.436364 -9.776380 chr9-83 chr9 22577713 22577869 + 86.4 NA intron (NM_178415, intron 21 of 22) intron (NM_178415, intron 21 of 22) 351675 NM_178415 319845 Mm.176725 NM_178415 ENSMUSG00000035919 Bbs9 E130103I17Rik Bardet-Biedl syndrome 9 (human) 0.000000 0.464968 -6.298096 chr1-103 chr1 91717005 91717161 + 86.4 NA intron (NM_001037136, intron 15 of 16) intron (NM_001037136, intron 15 of 16) 45264 NM_010262 14472 Mm.204730 NM_010262 ENSMUSG00000034486 Gbx2 D130058E05Rik|Gbx-2|MMoxA|Stra7 gastrulation brain homeobox 2 0.006410 0.445860 1.538596 chr1-121 chr1 138751647 138751803 + 81.3 NA intron (NM_030676, intron 6 of 8) intron (NM_030676, intron 6 of 8) 18316 NM_001159769 26424 Mm.16794 NM_001159769 ENSMUSG00000026398 Nr5a2 AU020803|D1Ertd308e|Ftf|LRH-1 nuclear receptor subfamily 5, group A, member 2 0.012821 0.445860 -4.576199 chr4-75 chr4 54007643 54007799 + 81.3 NA Intergenic (CTCTG)n|Simple_repeat|Simple_repeat 160577 NM_028053 52076 Mm.27184 NM_028053 ENSMUSG00000028420 Tmem38b 1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b transmembrane protein 38B 0.000000 0.566879 -4.614391 chr1-115 chr1 78203543 78203699 + 81.3 NA intron (NM_001004173, intron 1 of 4) intron (NM_001004173, intron 1 of 4) 10129 NM_001004173 433323 Mm.406972 NM_001004173 ENSMUSG00000032908 Sgpp2 MGC59240|SPPase2|Spp2 sphingosine-1-phosphate phosphotase 2 0.000000 0.490446 -1.763940 chr1-118 chr1 121417780 121417936 + 81.3 NA intron (NM_145506, intron 16 of 24) intron (NM_145506, intron 16 of 24) 58688 NM_001113416 226352 Mm.253156 NM_001113416 ENSMUSG00000026383 Epb4.1l5 1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb41l5|Lulu1|NBL5 erythrocyte protein band 4.1-like 5 0.006410 0.420382 2.477933 chr9-96 chr9 49117936 49118092 + 81.3 NA intron (NM_010077, intron 1 of 7) intron (NM_010077, intron 1 of 7) 25123 NM_010077 13489 Mm.41970 NM_010077 ENSMUSG00000032259 Drd2 D2R|Drd-2 dopamine receptor D2 0.012821 0.484076 -3.257824 chr11-74 chr11 115985632 115985788 + 81.3 NA Intergenic Intergenic -1442 NM_172571 217335 Mm.35241 NM_172571 ENSMUSG00000020776 Fbf1 1110033G01Rik|5930413D20|RP23-42F6.10|mKIAA1863 Fas (TNFRSF6) binding factor 1 0.000000 0.503185 -2.478385 chr1-119 chr1 127926914 127927070 + 81.3 NA intron (NM_172484, intron 8 of 14) intron (NM_172484, intron 8 of 14) -187232 NM_145100 72585 Mm.479965 NM_145100 ENSMUSG00000026344 Lypd1 2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1 Ly6/Plaur domain containing 1 0.012821 0.420382 0.582942 chr18-52 chr18 56990945 56991101 + 81.3 NA intron (NM_177115, intron 1 of 4) intron (NM_177115, intron 1 of 4) 59894 NM_177115 320253 Mm.312623 NM_177115 ENSMUSG00000032656 March3 6330411I15Rik|A530081L18Rik|AI843639|MARCH-III|MGC130167|MGC130168 membrane-associated ring finger (C3HC4) 3 0.006410 0.394904 -4.901684 chr14-16 chr14 11480445 11480601 + 81.3 NA intron (NM_001042617, intron 3 of 30) intron (NM_001042617, intron 3 of 30) 135823 NM_001042617 27062 Mm.260881 NM_001042617 ENSMUSG00000054423 Cadps AU067781|CAPS|CAPS1|MGC90712|mKIAA1121 Ca2+-dependent secretion activator 0.006410 0.433121 8.800850 chr8-66 chr8 60670587 60670743 + 81.3 NA intron (NM_175032, intron 11 of 11) intron (NM_175032, intron 11 of 11) -125468 NM_144731 108150 Mm.62886 NM_001167981 ENSMUSG00000031608 Galnt7 AI225872 UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 0.012821 0.445860 -7.515167 chr2-75 chr2 32231608 32231764 + 81.3 NA Intergenic RSINE1|SINE|B4 13788 NM_133783 96979 Mm.28048 NM_133783 ENSMUSG00000026820 Ptges2 0610038H10Rik|C79137|Gbf1|MGC6845|Mpges2|Pges2 prostaglandin E synthase 2 0.000000 0.439490 3.587121 chr5-113 chr5 120967301 120967457 + 81.3 NA intron (NM_008052, intron 2 of 9) intron (NM_008052, intron 2 of 9) 4907 NM_008052 14357 Mm.1645 NM_008052 ENSMUSG00000029603 Dtx1 Fxit1|KIAA4160|mKIAA4160 deltex 1 homolog (Drosophila) 0.057692 0.643312 -4.094777 chr12-64 chr12 103025038 103025194 + 81.3 NA intron (NM_172584, intron 2 of 9) intron (NM_172584, intron 2 of 9) 60954 NR_035457 100316812 NR_035457 Mir1936 mmu-mir-1936 microRNA mir-1936 0.032051 0.611465 -3.135248 chr14-23 chr14 58460371 58460527 + 81.3 NA exon (NM_026908, exon 6 of 11) exon (NM_026908, exon 6 of 11) 65359 NM_026908 69008 Mm.179091 NM_026908 ENSMUSG00000021981 Cab39l 1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L calcium binding protein 39-like 0.012821 0.426752 11.291227 chr1-114 chr1 74341628 74341784 + 81.3 NA promoter-TSS (NM_009509) promoter-TSS (NM_009509) -884 NM_009509 22349 Mm.471601 NM_009509 ENSMUSG00000026175 Vil1 MGC143974|Vil villin 1 0.051282 0.509554 -1.668935 chr10-59 chr10 127354454 127354610 + 81.3 NA Intergenic Intergenic 53049 NM_027301 70061 Mm.158320 NM_027301 ENSMUSG00000040127 Sdr9c7 1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro 4short chain dehydrogenase/reductase family 9C, member 7 0.032051 0.477707 -1.477458 chr11-68 chr11 70451588 70451744 + 81.3 NA Intergenic Intergenic -3650 NM_010326 14723 Mm.377085 NM_010326 ENSMUSG00000050675 Gp1ba GPIba|GPIbalpha glycoprotein 1b, alpha polypeptide 0.000000 0.426752 -5.686532 chr2-78 chr2 75093278 75093434 + 81.3 NA Intergenic Intergenic -366741 NM_146130 229279 Mm.379375 NM_053263 ENSMUSG00000059005 Hnrnpa3 2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3|MGC101940|MGC37309 heterogeneous nuclear ribonucleoprotein A3 0.019231 0.464968 -0.304978 chr3-61 chr3 121548529 121548685 + 81.3 NA Intergenic Intergenic -24240 NM_145394 213603 Mm.33062 NM_145394 ENSMUSG00000039865 Slc44a3 BC010552|MGC18084|MGC38127 solute carrier family 44, member 3 0.019231 0.471338 0.162160 chr9-104 chr9 108951229 108951385 + 81.3 NA TTS (NM_025689) TTS (NM_025689) -1534 NM_172775 235611 Mm.53862 NM_172775 ENSMUSG00000053646 Plxnb1 2900002G15Rik|AU042020|mKIAA0407 plexin B1 0.012821 0.496815 -5.067978 chr16-39 chr16 42043730 42043886 + 81.3 NA intron (NM_175548, intron 3 of 5) intron (NM_175548, intron 3 of 5) 216175 NM_008083 14432 Mm.1222 NM_008083 ENSMUSG00000047261 Gap43 B-50|Basp2|GAP-43 growth associated protein 43 0.019231 0.414013 -3.586513 chr14-22 chr14 34525474 34525630 + 81.3 NA Intergenic Intergenic 115915 NM_001033766 239036 Mm.239970 NM_001033766 ENSMUSG00000041068 4930596D02Rik - RIKEN cDNA 4930596D02 gene 0.000000 0.401274 -1.211906 chr3-60 chr3 108605091 108605247 + 81.3 NA intron (NM_001033304, intron 6 of 20) intron (NM_001033304, intron 6 of 20) -31944 NM_011319 20226 Mm.28688 NM_011319 ENSMUSG00000068739 Sars C78314|Sars1|Strs seryl-aminoacyl-tRNA synthetase 0.000000 0.388535 -3.068825 chr10-57 chr10 41279219 41279375 + 81.3 NA Intergenic LTR53|LTR|ERVL -3129 NM_001177571 75973 Mm.228517 NM_001177571 ENSMUSG00000075225 Ccdc162 5033413D22Rik|Gm61 coiled-coil domain containing 162 0.000000 0.547771 -2.774579 chr3-62 chr3 153717534 153717690 + 81.3 NA Intergenic Intergenic -55093 NM_011372 20447 Mm.440929 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.006410 0.382166 -3.003339 chr14-21 chr14 29524599 29524755 + 81.3 NA Intergenic Intergenic -19180 NM_019460 54650 Mm.294662 NM_001166531 ENSMUSG00000006527 Sfmbt1 4930442N21Rik|9330180L21Rik|AA536974|DKFZp434L243|Sfmbt|Smr Scm-like with four mbt domains 1 0.012821 0.477707 3.723897 chr9-102 chr9 86393756 86393912 + 81.3 NA intron (NM_008615, intron 10 of 13) intron (NM_008615, intron 10 of 13) 25064 NM_027100 69519 Mm.272517 NM_001145968 ENSMUSG00000032417 Rwdd2a 1700030C20Rik|AI848608|MGC144625|MGC144626|Rwdd2 RWD domain containing 2A 0.000000 0.617834 -10.826314 chr6-47 chr6 65514632 65514788 + 81.3 NA Intergenic Intergenic -5265 NM_001001495 414084 Mm.117558 NM_001001495 ENSMUSG00000044162 Tnip3 9030611K07Rik|ABIN-3|LIND|MGC129495 TNFAIP3 interacting protein 3 0.006410 0.407643 -5.398274 chr1-123 chr1 153452118 153452274 + 81.3 NA intron (NM_022018, intron 6 of 13) intron (NM_022018, intron 6 of 13) -65395 NM_001039644 66967 Mm.337691 NM_001039644 ENSMUSG00000043019 Edem3 2310050N11Rik ER degradation enhancer, mannosidase alpha-like 3 0.032051 0.388535 -3.564353 chr15-45 chr15 73227052 73227208 + 76.2 NA intron (NM_001130409, intron 1 of 29) intron (NM_001130409, intron 1 of 29) 23317 NM_001130409 14083 Mm.254494 NM_001130409 ENSMUSG00000022607 Ptk2 FAK|FRNK|Fadk|KIAA4203|mKIAA4203 PTK2 protein tyrosine kinase 2 0.006410 0.318471 -1.196155 chr5-127 chr5 130368656 130368812 + 76.2 NA intron (NM_001130476, intron 1 of 5) intron (NM_001130476, intron 1 of 5) 4546 NM_001130476 22021 Mm.332720 NM_001130476 ENSMUSG00000034118 Tpst1 R75054 protein-tyrosine sulfotransferase 1 0.000000 0.464968 -4.100724 chr5-123 chr5 125531214 125531370 + 76.2 NA Intergenic Intergenic -63099 NM_011424 20602 Mm.278646 NM_011424 ENSMUSG00000029478 Ncor2 N-CoR|SMRT|SMRTe nuclear receptor co-repressor 2 0.019231 0.592357 -1.896165 chr2-94 chr2 144600943 144601099 + 76.2 NA Intergenic Intergenic 85915 NM_025490 66328 Mm.464235 NM_025490 ENSMUSG00000027431 1700010M22Rik - RIKEN cDNA 1700010M22 gene 0.012821 0.356688 -4.606475 chr1-143 chr1 156790600 156790756 + 76.2 NA Intergenic Intergenic 71176 NM_010500 15939 Mm.12246 NM_010500 ENSMUSG00000056708 Ier5 - immediate early response 5 0.012821 0.471338 -0.436737 chr11-88 chr11 102155484 102155640 + 76.2 NA Intergenic Intergenic -20376 NM_011551 21429 Mm.2845 NM_001044383 ENSMUSG00000020923 Ubtf A930005G04Rik|NOR-90|Tcfubf|UBF|UBF1 upstream binding transcription factor, RNA polymerase I 0.025641 0.541401 -6.910408 chr19-11 chr19 4485172 4485328 + 76.2 NA Intergenic Intergenic -8107 NM_134164 171180 Mm.262270 NM_134164 ENSMUSG00000049303 Syt12 - synaptotagmin XII 0.006410 0.471338 -3.695789 chr15-46 chr15 74416768 74416924 + 76.2 NA TTS (NM_174991) TTS (NM_174991) 46727 NM_001177437 69439 Mm.263708 XM_128161 ENSMUSG00000022603 1700016M24Rik MGC132932 RIKEN cDNA 1700016M24 gene 0.006410 0.573248 -1.919504 chr4-92 chr4 34718296 34718452 + 76.2 NA Intergenic (TCTCTG)n|Simple_repeat|Simple_repeat -21127 NM_001007589 433693 Mm.399624 NM_001007589 ENSMUSG00000028291 Akirin2 2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2|MGC90611 akirin 2 0.019231 0.541401 2.170385 chr2-92 chr2 139072234 139072390 + 76.2 NA Intergenic Intergenic -113048 NM_175467 228677 Mm.100450 NM_175467 ENSMUSG00000039092 Sptlc3 C130053K05Rik serine palmitoyltransferase, long chain base subunit 3 0.006410 0.464968 3.562436 chr6-59 chr6 145740905 145741061 + 76.2 NA Intergenic Intergenic -24558 NM_027760 71323 Mm.444985 NM_027760 ENSMUSG00000030259 Rassf8 5133400D11Rik|AA815821|AW123240|Hoj1|MGC144731|MGC144732|mHoj-1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.000000 0.528662 2.108995 chr1-137 chr1 80202403 80202559 + 76.2 NA intron (NM_016716, intron 1 of 15) intron (NM_016716, intron 1 of 15) 16973 NM_016716 26554 Mm.12665 NM_016716 ENSMUSG00000004364 Cul3 AI467304|AW146203|mKIAA0617 cullin 3 0.000000 0.388535 -1.495782 chr5-129 chr5 135726634 135726790 + 76.2 NA intron (NM_146001, intron 9 of 30) intron (NM_146001, intron 9 of 30) -47539 NM_148932 107939 Mm.28399 NM_148932 ENSMUSG00000053293 Pom121 2610027A18Rik|C80273|mKIAA0618 nuclear pore membrane protein 121 0.012821 0.426752 -2.311781 chr17-59 chr17 4597683 4597839 + 76.2 NA Intergenic Intergenic -353794 NM_001085355 239985 Mm.133401 XM_001474848 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235 AT rich interactive domain 1B (SWI-like) 0.012821 0.445860 -2.147130 chr12-69 chr12 55724378 55724534 + 76.2 NA Intergenic Intergenic -10820 NM_026998 72183 Mm.28240 NM_026998 ENSMUSG00000005656 Snx6 2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963 sorting nexin 6 0.012821 0.477707 -8.257857 chr3-65 chr3 85951116 85951272 + 76.2 NA Intergenic Intergenic 22251 NM_177130 320302 Mm.119926 NM_177130 ENSMUSG00000031286 Glt28d2 4732486J07Rik|Glt28d1l|MGC148218 glycosyltransferase 28 domain containing 2 0.012821 0.471338 -0.471522 chr3-71 chr3 121596797 121596953 + 76.2 NA Intergenic Intergenic 38633 NR_036456 319738 Mm.65320 NR_036456 A730020M07Rik - RIKEN cDNA A730020M07 gene 0.012821 0.471338 -4.071437 chr5-125 chr5 129418303 129418459 + 76.2 NA intron (NM_001081342, intron 2 of 25) intron (NM_001081342, intron 2 of 25) 6924 NM_001081342 243277 Mm.440501 NM_001081342 ENSMUSG00000044017 Gpr133 E230012M21Rik G protein-coupled receptor 133 0.057692 0.598726 -7.287967 chr9-106 chr9 44469090 44469246 + 76.2 NA intron (NM_153537, intron 5 of 21) intron (NM_153537, intron 5 of 21) 17021 NM_153537 102693 Mm.28639 NM_153537 ENSMUSG00000048537 Phldb1 AU041016|D330037A14Rik|Ll5a|MGC32394 pleckstrin homology-like domain, family B, member 1 0.012821 0.573248 -3.963177 chr11-83 chr11 64681262 64681418 + 76.2 NA Intergenic (GGGAGA)n|Simple_repeat|Simple_repeat -113889 NM_023479 68626 Mm.157711 NM_023479 ENSMUSG00000020549 Elac2 1110017O07Rik|D11Wsu80e|Hpc2 elaC homolog 2 (E. coli) 0.000000 0.579618 -9.185639 chr10-62 chr10 33247675 33247831 + 76.2 NA intron (NM_175448, intron 3 of 5) intron (NM_175448, intron 3 of 5) 66263 NM_175448 215890 Mm.417656 NM_175448 ENSMUSG00000019785 Clvs2 A330019N05Rik|Rlbp1l2 clavesin 2 0.012821 0.394904 -2.311781 chr8-71 chr8 129075119 129075275 + 76.2 NA Intergenic Intergenic -109471 NM_175434 210027 Mm.459322 NM_175434 ENSMUSG00000057060 Slc35f3 B230375D17Rik|MGC141263|MGC141264 solute carrier family 35, member F3 0.006410 0.496815 -3.829224 chr3-72 chr3 129821361 129821517 + 76.2 NA exon (NM_026578, exon 3 of 7) exon (NM_026578, exon 3 of 7) 1979 NM_026578 68147 Mm.24873 NM_026578 ENSMUSG00000028010 Gar1 AA409823|AI326794|C430047J18Rik|Nola1 GAR1 ribonucleoprotein homolog (yeast) 0.025641 0.439490 5.370134 chr15-44 chr15 66677136 66677292 + 76.2 NA intron (NM_009375, intron 46 of 47) intron (NM_009375, intron 46 of 47) -15716 NM_001029841 20491 Mm.7601 NM_001029841 ENSMUSG00000022372 Sla Slap|Slap-1 src-like adaptor 0.000000 0.401274 -3.119460 chr13-41 chr13 29745622 29745778 + 76.2 NA intron (NM_144536, intron 5 of 15) intron (NM_144536, intron 5 of 15) 117353 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.006410 0.433121 -1.996658 chr14-29 chr14 98311020 98311176 + 76.2 NA Intergenic Intergenic 129274 NM_009769 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF Kruppel-like factor 5 0.000000 0.363057 -1.234481 chr11-80 chr11 7658950 7659106 + 76.2 NA Intergenic Intergenic -545102 NM_008343 16009 Mm.29254 NM_008343 ENSMUSG00000020427 Igfbp3 AI649005|IGFBP-3|IGgfbp3 insulin-like growth factor binding protein 3 0.000000 0.490446 -2.256466 chrX-11 chrX 132659442 132659598 + 76.2 NA Intergenic Intergenic -192830 NM_007957 13984 Mm.8017 NM_007957 ENSMUSG00000023443 Esx1 Spx1 extraembryonic, spermatogenesis, homeobox 1 0.006410 0.477707 -1.377121 chr1-134 chr1 74831952 74832108 + 76.2 NA Intergenic Intergenic 1898 NR_029876 723900 NR_029876 Mir375 Mirn375|mmu-mir-375 microRNA 375 0.012821 0.649682 -5.592157 chr6-53 chr6 55484579 55484735 + 76.2 NA Intergenic Intergenic 103100 NM_007407 11517 Mm.44245 NM_001025372 ENSMUSG00000029778 Adcyap1r1 2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R adenylate cyclase activating polypeptide 1 receptor 1 0.012821 0.471338 -2.409399 chr1-133 chr1 72159667 72159823 + 76.2 NA Intergenic Intergenic -14230 NM_001005423 381269 Mm.422636 NM_001005423 ENSMUSG00000039395 Mreg Gm974|MGC92980|Wdt2|dsu melanoregulin 0.006410 0.439490 1.120159 chr18-55 chr18 30539606 30539762 + 76.2 NA Intergenic (TTCG)n|Simple_repeat|Simple_repeat 123779 NM_181414 225326 Mm.194127 NM_181414 ENSMUSG00000033628 Pik3c3 5330434F23Rik|Vps34 phosphoinositide-3-kinase, class 3 0.019231 0.382166 -11.405293 chr4-91 chr4 11813036 11813192 + 76.2 NA Intergenic Intergenic 79746 NM_001098231 381511 Mm.331489 NM_001033453 ENSMUSG00000049225 Pdp1 Gm1024|Ppm2c pyruvate dehyrogenase phosphatase catalytic subunit 1 0.000000 0.407643 5.496274 chr2-84 chr2 48486398 48486554 + 76.2 NA Intergenic Intergenic -149641 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA 0.012821 0.388535 -4.774666 chr15-41 chr15 26585107 26585263 + 76.2 NA intron (NM_176959, intron 2 of 3) intron (NM_176959, intron 2 of 3) 255104 NM_176959 448987 Mm.253378 NM_176959 ENSMUSG00000043556 Fbxl7 AL023057|D230018M15Rik|FBL7|Fbl6|MGC102204 F-box and leucine-rich repeat protein 7 0.000000 0.375796 -3.456415 chr1-127 chr1 4086506 4086662 + 76.2 NA Intergenic Intergenic 263889 NM_011283 19888 Mm.294263 NM_011283 ENSMUSG00000025900 Rp1 Dcdc3|Orp1|Rp1h|mG145 retinitis pigmentosa 1 (human) 0.000000 0.401274 -0.367743 chr14-27 chr14 58487257 58487413 + 76.2 NA intron (NM_026908, intron 9 of 10) intron (NM_026908, intron 9 of 10) 64734 NM_001168537 71891 Mm.439850 NM_001168535 ENSMUSG00000021982 Cdadc1 2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15 cytidine and dCMP deaminase domain containing 1 0.006410 0.433121 -4.880512 chr18-56 chr18 31214345 31214501 + 76.2 NA intron (NM_009065, intron 4 of 4) intron (NM_009065, intron 4 of 4) 245715 NM_009065 19762 Mm.5163 NM_009065 ENSMUSG00000057455 Rit2 RIBA|Rin|Roc2 Ras-like without CAAX 2 0.000000 0.484076 -5.725527 chr4-98 chr4 137202713 137202869 + 76.2 NA intron (NM_199307, intron 5 of 19) intron (NM_199307, intron 5 of 19) -62754 NM_172703 230861 Mm.268903 NM_172703 ENSMUSG00000028760 Eif4g3 1500002J22Rik|4833436O05|4930523M17Rik|G1-419-52|eIF4GII|repro8 eukaryotic translation initiation factor 4 gamma, 3 0.019231 0.452229 -2.084324 chr4-93 chr4 47315089 47315245 + 76.2 NA intron (NM_009928, intron 28 of 39) intron (NM_009928, intron 28 of 39) -59237 NM_009370 21812 Mm.197552 XM_977763 ENSMUSG00000007613 Tgfbr1 ALK5|AU017191|Alk-5|TbetaR-I|TbetaRI transforming growth factor, beta receptor I 0.019231 0.477707 -0.370920 chr18-57 chr18 50828910 50829066 + 76.2 NA Intergenic Intergenic -135104 NM_026108 67365 Mm.158150 NM_026108 ENSMUSG00000048875 Hdhd1a 1700121L12Rik|GS1 haloacid dehalogenase-like hydrolase domain containing 1A 0.006410 0.420382 -5.564735 chr12-68 chr12 47241149 47241305 + 76.2 NA Intergenic Intergenic 453505 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.006410 0.343949 3.021627 chr2-90 chr2 92827945 92828101 + 76.2 NA intron (NM_001177536, intron 1 of 6) intron (NM_001177536, intron 1 of 6) 18960 NM_001177536 100042784 Mm.442142 XM_001478808 ENSMUSG00000075028 Prdm11 8030443D09Rik|AA163972|Gm707 PR domain containing 11 0.032051 0.458599 -2.613582 chr6-52 chr6 54194111 54194267 + 76.2 NA intron (NM_001163640, intron 6 of 12) intron (NM_001163640, intron 6 of 12) -8210 NM_023543 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.006410 0.426752 2.013508 chr4-100 chr4 11580993 11581149 + 71.1 NA Intergenic Intergenic -50522 NM_010276 14579 Mm.247486 NM_010276 ENSMUSG00000028214 Gem AV020497 GTP binding protein (gene overexpressed in skeletal muscle) 0.032051 0.522293 1.555035 chr1-159 chr1 158794112 158794268 + 71.1 NA Intergenic Intergenic -17887 NM_023884 78255 Mm.28376 NM_001159965 ENSMUSG00000026594 Ralgps2 1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161 Ral GEF with PH domain and SH3 binding motif 2 0.012821 0.484076 -3.666272 chr9-116 chr9 61702269 61702289 + 71.1 NA Intergenic Intergenic 10237 NM_018853 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik|MGC103133 ribosomal protein, large, P1 0.050000 0.523810 -16.087904 chr6-68 chr6 99609494 99609650 + 71.1 NA intron (NM_025829, intron 2 of 6) intron (NM_025829, intron 2 of 6) 22662 NM_025829 66892 Mm.32889 NM_025829 ENSMUSG00000030068 Eif4e3 1300018P11Rik|AI451927|eIF4E-3 eukaryotic translation initiation factor 4E member 3 0.019231 0.452229 -5.160080 chr10-73 chr10 21178016 21178172 + 71.1 NA Intergenic Intergenic -104466 NR_027968 67692 Mm.54306 NR_027968 1700020N01Rik MGC118229 RIKEN cDNA 1700020N01 gene 0.019231 0.388535 0.668371 chr19-16 chr19 46781503 46781659 + 71.1 NA intron (NM_020577, intron 10 of 10) intron (NM_020577, intron 10 of 10) 20828 NM_020577 57344 Mm.28566 NM_020577 ENSMUSG00000003559 As3mt 2310045H08Rik|Cyt19 arsenic (+3 oxidation state) methyltransferase 0.006410 0.509554 -3.804704 chr11-92 chr11 19933756 19933912 + 71.1 NA Intergenic Intergenic 79120 NM_146243 66713 Mm.259045 NM_146243 ENSMUSG00000020152 Actr2 4921510D23Rik|AA409782|Arp2|D6Ertd746e|MGC36604 ARP2 actin-related protein 2 homolog (yeast) 0.025641 0.535032 -6.696984 chr19-17 chr19 47599353 47599509 + 71.1 NA Intergenic B3A|SINE|B2 -9100 NM_175360 108689 Mm.218048 NM_175360 ENSMUSG00000042694 Obfc1 0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32 oligonucleotide/oligosaccharide-binding fold containing 1 0.012821 0.426752 -2.311674 chr2-107 chr2 173236665 173236821 + 71.1 NA intron (NR_027957, intron 6 of 14) intron (NR_027957, intron 6 of 14) 65735 NR_027957 100043911 Mm.260590 XM_001481221 Ppp4r1l-ps 1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l protein phosphatase 4, regulatory subunit 1-like, pseudogene 0.000000 0.452229 -1.466150 chr10-80 chr10 118520039 118520195 + 71.1 NA Intergenic Intergenic 122998 NM_027994 71902 Mm.203965 XM_125901 ENSMUSG00000020114 Cand1 2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829 cullin associated and neddylation disassociated 1 0.006410 0.452229 -3.889673 chr7-58 chr7 122370777 122370933 + 71.1 NA intron (NM_008855, intron 10 of 16) intron (NM_008855, intron 10 of 16) -92036 NM_019430 54376 Mm.444212 NM_019430 ENSMUSG00000066189 Cacng3 - calcium channel, voltage-dependent, gamma subunit 3 0.006410 0.382166 -5.786522 chr17-70 chr17 34229160 34229316 + 71.1 NA intron (NM_019441, intron 6 of 7) intron (NM_019441, intron 6 of 7) -5211 NM_152922 81701 Mm.231343 NM_152922 ENSMUSG00000015467 Egfl8 Ng3 EGF-like domain 8 0.032051 0.503185 -1.015025 chr2-105 chr2 166141706 166141862 + 71.1 NA intron (NR_015558, intron 1 of 2) intron (NR_015558, intron 1 of 2) 3129 NR_015558 319684 Mm.399746 NR_015558 5031425F14Rik - RIKEN cDNA 5031425F14 gene 0.044872 0.515924 -0.005249 chr10-76 chr10 83059816 83059972 + 71.1 NA intron (NM_145220, intron 2 of 20) intron (NM_145220, intron 2 of 20) 18569 NM_145220 216190 Mm.282985 NM_145220 ENSMUSG00000020263 Appl2 Dip3b adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 0.006410 0.464968 1.389710 chr10-78 chr10 93050282 93050438 + 71.1 NA Intergenic Intergenic -20487 NM_021320 57764 Mm.291158 NM_021320 ENSMUSG00000020019 Ntn4 - netrin 4 0.019231 0.535032 2.523540 chr6-65 chr6 86031215 86031371 + 71.1 NA Intergenic Intergenic -12424 NM_013458 11519 Mm.104155 NM_013458 ENSMUSG00000030000 Add2 2900072M03Rik adducin 2 (beta) 0.019231 0.433121 -1.471175 chr3-80 chr3 100588927 100589083 + 71.1 NA Intergenic Intergenic 29248 NM_001142952 74645 Mm.226900 NM_001142952 Fam46c 4930431B09Rik|AI449797 family with sequence similarity 46, member C 0.019231 0.433121 1.188983 chr13-53 chr13 81520436 81520592 + 71.1 NA intron (NR_015587, intron 1 of 1) intron (NR_015587, intron 1 of 1) 92743 NR_015587 319983 Mm.343027 NR_015587 9330111N05Rik - RIKEN cDNA 9330111N05 gene 0.000000 0.433121 -0.855092 chr8-84 chr8 126603649 126603805 + 71.1 NA Intergenic Intergenic 63709 NM_133955 69581 Mm.168257 NM_133955 ENSMUSG00000039960 Rhou 2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K ras homolog gene family, member U 0.006410 0.528662 -5.280792 chr4-108 chr4 105014337 105014493 + 71.1 NA Intergenic Intergenic 359137 NM_080555 67916 Mm.348326 NM_080555 ENSMUSG00000028517 Ppap2b 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b phosphatidic acid phosphatase type 2B 0.006410 0.414013 0.134572 chr12-74 chr12 25077469 25077625 + 71.1 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -10112 NM_020614 21340 Mm.421402 NM_020614 ENSMUSG00000059669 Taf1b 4930408G01Rik|A230108M10Rik|TAFI68|Tafi86 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B 0.000000 0.611465 -4.343578 chr9-114 chr9 61094245 61094401 + 71.1 NA Intergenic Intergenic -76048 NM_001083928 21887 Mm.469199 NM_001083927 ENSMUSG00000032280 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 transducin-like enhancer of split 3, homolog of Drosophila E(spl) 0.012821 0.509554 -5.758323 chr5-134 chr5 32677596 32677752 + 71.1 NA Intergenic Intergenic 47514 NM_172147 665270 Mm.160067 NM_001081407 ENSMUSG00000029134 Plb1 4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606|MGC40917 phospholipase B1 0.012821 0.433121 -1.798989 chrX-12 chrX 34917290 34917446 + 71.1 NA Intergenic (CAG)n|Simple_repeat|Simple_repeat -37598 NM_021550 59048 Mm.441410 NM_021550 ENSMUSG00000048970 C1galt1c1 1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc C1GALT1-specific chaperone 1 0.000000 0.503185 -11.194649 chr9-122 chr9 112093601 112093757 + 71.1 NA intron (NR_033432, intron 1 of 3) intron (NR_033432, intron 1 of 3) -7783 NR_033433 620760 Mm.259863 XM_001478934 2900079G21Rik C130083B14|Gm6179 RIKEN cDNA 2900079G21 gene 0.000000 0.414013 4.249397 chr11-95 chr11 57443696 57443852 + 71.1 NA Intergenic Intergenic -17862 NM_134189 171212 Mm.271670 NM_134189 ENSMUSG00000020520 Galnt10 AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 0.019231 0.490446 -4.950619 chr15-53 chr15 80386839 80386995 + 71.1 NA intron (NM_001163189, intron 1 of 5) intron (NM_001163189, intron 1 of 5) 808 NM_001163189 383075 Mm.297626 XM_356844 Enthd1 Gm1242|Gm86|MGC189999 ENTH domain containing 1 0.025641 0.458599 -0.664061 chr8-78 chr8 47982243 47982399 + 71.1 NA intron (NM_007981, intron 1 of 20) intron (NM_007981, intron 1 of 20) 12463 NM_007981 14081 Mm.210323 NM_007981 ENSMUSG00000018796 Acsl1 Acas|Acas1|Acs|FACS|Facl2 acyl-CoA synthetase long-chain family member 1 0.012821 0.420382 -1.623448 chr1-154 chr1 78645234 78645390 + 71.1 NA Intergenic Intergenic -50660 NM_021342 57814 Mm.24386 NM_021342 ENSMUSG00000047330 Kcne4 AW487937|MiRP3 potassium voltage-gated channel, Isk-related subfamily, gene 4 0.006410 0.388535 -4.677976 chr11-93 chr11 27457130 27457286 + 71.1 NA Intergenic T-rich|Low_complexity|Low_complexity 772101 NR_002890 654472 Mm.347777 NR_002890 Gm12070 OTTMUSG00000005300 glyceraldehyde-3-phosphate dehydrogenase pseudogene 0.000000 0.369427 -5.725527 chr12-87 chr12 116982813 116982969 + 71.1 NA intron (NM_011215, intron 1 of 22) intron (NM_011215, intron 1 of 22) 55163 NM_011215 19276 Mm.206054 NM_011215 ENSMUSG00000056553 Ptprn2 4930425H11Rik|IA2beta|KIAA0387|PTP-NP|Phol|mKIAA0387|phogrin protein tyrosine phosphatase, receptor type, N polypeptide 2 0.000000 0.484076 -3.433528 chr3-86 chr3 129797189 129797345 + 71.1 NA Intergenic Intergenic 17260 NM_009102 20132 Mm.278758 NM_009102 ENSMUSG00000028012 Rrh - retinal pigment epithelium derived rhodopsin homolog 0.019231 0.401274 -8.102739 chr4-110 chr4 127988430 127988586 + 71.1 NA Intergenic Intergenic 123894 NM_177758 269585 Mm.153291 NM_177758 ENSMUSG00000061894 Zscan20 C130001F22|MGC30798|Zfp31|Zkscan20 zinc finger and SCAN domains 20 0.006410 0.407643 -2.837043 chr4-109 chr4 125095101 125095257 + 71.1 NA intron (NM_001081097, intron 1 of 15) intron (NM_001081097, intron 1 of 15) 88831 NM_008049 14337 Mm.478511 NM_008049 Ftl2 Ftl|Ftl-2 ferritin light chain 2 0.012821 0.541401 -4.582381 chr4-114 chr4 152387965 152388121 + 71.1 NA Intergenic Intergenic -61413 NM_001099299 230959 Mm.318874 XM_001475023 ENSMUSG00000039546 Ajap1 Gm573 adherens junction associated protein 1 0.032051 0.414013 -5.787682 chr17-73 chr17 72819260 72819416 + 71.1 NA Intergenic Intergenic -3966 NM_029999 77889 Mm.154109 XM_001480246 ENSMUSG00000024063 Lbh 1810009F10Rik|6720416L16Rik limb-bud and heart 0.006410 0.439490 -2.608285 chr5-141 chr5 132140083 132140239 + 71.1 NA intron (NM_177047, intron 4 of 18) intron (NM_177047, intron 4 of 18) -547936 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.019231 0.458599 -3.978670 chr2-98 chr2 28237582 28237738 + 71.1 NA Intergenic Intergenic -32289 NM_001005420 241289 Mm.330095 NM_001005420 ENSMUSG00000035829 Gm347 Kiaa0649|MGC99945|mKIAA0649 predicted gene 347 0.012821 0.522293 0.447030 chr12-81 chr12 96070908 96071064 + 71.1 NA Intergenic Intergenic -17070 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 KIAA0405 fibronectin leucine rich transmembrane protein 2 0.012821 0.401274 1.141568 chr6-70 chr6 114307464 114307620 + 71.1 NA Intergenic (CACAG)n|Simple_repeat|Simple_repeat -55988 NM_008285 15465 Mm.333327 NM_008285 ENSMUSG00000053004 Hrh1 Bphs histamine receptor H1 0.000000 0.611465 -4.001246 chr11-96 chr11 64544403 64544559 + 71.1 NA Intergenic Intergenic -250748 NM_023479 68626 Mm.157711 NM_023479 ENSMUSG00000020549 Elac2 1110017O07Rik|D11Wsu80e|Hpc2 elaC homolog 2 (E. coli) 0.006410 0.490446 -4.811411 chr3-85 chr3 124380725 124380881 + 71.1 NA Intergenic Lx2|LINE|L1 37247 NM_027939 71824 Mm.331353 XM_131185 ENSMUSG00000027973 1700006A11Rik - RIKEN cDNA 1700006A11 gene 0.000000 0.375796 3.586478 chr12-77 chr12 41927642 41927798 + 71.1 NA intron (NM_053122, intron 4 of 6) intron (NM_053122, intron 4 of 6) 68454 NM_010733 16981 Mm.39913 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal 0.012821 0.515924 1.923391 chr11-103 chr11 102036174 102036330 + 71.1 NA intron (NM_001077696, intron 2 of 26) intron (NM_001077696, intron 2 of 26) 10010 NM_010412 15184 Mm.22665 NM_001077696 ENSMUSG00000008855 Hdac5 AI426555|Hdac4|mHDA1|mKIAA0600 histone deacetylase 5 0.012821 0.605096 1.813434 chr7-61 chr7 132117133 132117289 + 71.1 NA intron (NM_029935, intron 1 of 7) intron (NM_029935, intron 1 of 7) -36795 NR_028578 100043682 Mm.213582 XM_001480209 ENSMUSG00000073814 Gm10584 ENSMUSG00000073814 predicted gene 10584 0.012821 0.458599 -6.298096 chr2-100 chr2 48441573 48441729 + 71.1 NA Intergenic Intergenic -194466 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA 0.019231 0.363057 -2.206244 chr2-97 chr2 18034320 18034476 + 71.1 NA intron (NM_010804, intron 5 of 22) intron (NM_010804, intron 5 of 22) 61374 NM_010804 17354 Mm.209175 NM_010804 ENSMUSG00000026743 Mllt10 Af10|B130021D15Rik|D630001B22Rik|KIAA4140|mKIAA4140 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.006410 0.528662 -0.591974 chr3-90 chr3 153562415 153562571 + 71.1 NA intron (NM_011372, intron 1 of 4) intron (NM_011372, intron 1 of 4) 100026 NM_011372 20447 Mm.440929 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.006410 0.515924 1.389710 chr10-79 chr10 98698543 98698699 + 71.1 NA Intergenic Intergenic 5703 NM_026268 67603 Mm.1791 NM_026268 ENSMUSG00000019960 Dusp6 1300019I03Rik|MGC98540|MKP-3|MKP3|PYST1 dual specificity phosphatase 6 0.012821 0.452229 -2.500281 chr12-82 chr12 109850138 109850294 + 71.1 NA Intergenic Intergenic -50413 NR_033813 13386 Mm.157069 NM_001190703 ENSMUSG00000040856 Dlk1 AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1 delta-like 1 homolog (Drosophila) 0.025641 0.585987 -6.275895 chr17-65 chr17 8652387 8652543 + 71.1 NA intron (NM_011866, intron 1 of 21) intron (NM_011866, intron 1 of 21) 12547 NM_011866 23984 Mm.87161 NM_011866 ENSMUSG00000023868 Pde10a - phosphodiesterase 10A 0.000000 0.585987 -4.231553 chr2-104 chr2 137517457 137517613 + 71.1 NA Intergenic MER5B|DNA|MER1_type -430489 NM_001025431 228662 Mm.153405 NM_001025431 ENSMUSG00000062098 Btbd3 MGC25591|mKIAA0952 BTB (POZ) domain containing 3 0.000000 0.490446 -4.786664 chr7-54 chr7 111944690 111944846 + 71.1 NA intron (NM_015814, intron 2 of 7) intron (NM_015814, intron 2 of 7) 5470 NM_015814 50781 Mm.55143 NM_015814 ENSMUSG00000030772 Dkk3 AW061014|C87148 dickkopf homolog 3 (Xenopus laevis) 0.006410 0.503185 -3.798459 chr4-112 chr4 138784220 138784376 + 71.1 NA Intergenic Intergenic -62913 NM_183148 212632 Mm.30464 NM_183148 ENSMUSG00000041025 Iffo2 C79267|MGC36549 intermediate filament family orphan 2 0.000000 0.484076 2.065559 chr1-152 chr1 74660116 74660272 + 71.1 NA intron (NM_024264, intron 1 of 8) intron (NM_024264, intron 1 of 8) 13414 NM_024264 104086 Mm.85083 NM_024264 ENSMUSG00000026170 Cyp27a1 1300013A03Rik|Cyp27 cytochrome P450, family 27, subfamily a, polypeptide 1 0.006410 0.496815 0.427378 chr8-73 chr8 17974612 17974768 + 71.1 NA Intergenic (CAAAAA)n|Simple_repeat|Simple_repeat -439328 NM_053171 94109 Mm.436988 NM_053171 ENSMUSG00000060924 Csmd1 B930082H09|KIAA1890|mKIAA1890 CUB and Sushi multiple domains 1 0.000000 0.350318 -4.925023 chr1-147 chr1 36516124 36516280 + 71.1 NA intron (NM_001126046, intron 12 of 14) intron (NM_001126046, intron 12 of 14) -13275 NM_001126047 20353 Mm.29558 XM_898566 ENSMUSG00000026121 Sema4c AI426163|Semacl1|Semaf|Semai|mKIAA1739 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 0.012821 0.464968 -6.441965 chr17-68 chr17 27750879 27751035 + 71.1 NA intron (NM_181413, intron 12 of 24) intron (NM_181413, intron 12 of 24) 57216 NM_013687 21463 Mm.29758 NM_001085555 ENSMUSG00000062859 Tcp11 D17Ken1|MGC107229|Tcp-11 t-complex protein 11 0.012821 0.547771 -4.343578 chr5-132 chr5 14535815 14535971 + 71.1 NA intron (NM_001110796, intron 2 of 19) intron (NM_001110796, intron 2 of 19) 14970 NM_001110796 26875 Mm.146275 NM_001110796 ENSMUSG00000061601 Pclo Acz|Pico|mKIAA0559 piccolo (presynaptic cytomatrix protein) 0.000000 0.363057 1.418855 chr5-137 chr5 96494391 96494547 + 71.1 NA intron (NM_053158, intron 7 of 8) intron (NM_053158, intron 7 of 8) 44053 NM_053158 94061 Mm.295499 NM_001039084 ENSMUSG00000029486 Mrpl1 2410002L03Rik|5830418D04Rik|AI462572 mitochondrial ribosomal protein L1 0.006410 0.401274 -1.928760 chr4-111 chr4 128183178 128183334 + 71.1 NA Intergenic Intergenic -24043 NM_018774 54383 Mm.480599 NM_001195083 ENSMUSG00000028796 Phc2 A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36 polyhomeotic-like 2 (Drosophila) 0.032051 0.509554 0.606282 chr11-100 chr11 98163567 98163723 + 71.1 NA Intergenic Intergenic -1182 NM_144828 19049 Mm.45372 NM_144828 ENSMUSG00000061718 Ppp1r1b AU040756|DARPP-32|Darpp32 protein phosphatase 1, regulatory (inhibitor) subunit 1B 0.006410 0.579618 -1.620129 chr3-76 chr3 81495075 81495231 + 71.1 NA Intergenic Intergenic 372811 NM_019971 54635 Mm.331089 NM_019971 ENSMUSG00000028019 Pdgfc 1110064L01Rik|AI647969|PDGF-C platelet-derived growth factor, C polypeptide 0.006410 0.420382 -0.010261 chr9-126 chr9 13906288 13906444 + 66.0 NA Intergenic (CAGTA)n|Simple_repeat|Simple_repeat -120331 NM_030261 75747 Mm.439776 NM_030261 ENSMUSG00000032009 Sesn3 5630400E15Rik|BC003348|MGC7182|SEST3 sestrin 3 0.000000 0.382166 -0.677331 chr2-115 chr2 71936201 71936357 + 66.0 NA intron (NM_019688, intron 4 of 29) intron (NM_019688, intron 4 of 29) -150196 NM_023057 65964 Mm.314618 NM_001164791 ENSMUSG00000004085 B230120H23Rik AV006891|MLTK|MLTKalpha|MLTKbeta|Zak RIKEN cDNA B230120H23 gene 0.006410 0.471338 -2.556221 chr5-153 chr5 74418639 74418795 + 66.0 NA Intergenic B3A|SINE|B2 43491 NR_031758 100313943 Mm.46547 NR_031758 Snora26 MBI-6 small nucleolar RNA, H/ACA box 26 0.012821 0.477707 -2.584945 chr8-100 chr8 127471802 127471958 + 66.0 NA intron (NM_023709, intron 1 of 19) intron (NM_023709, intron 1 of 19) 9680 NM_023709 73647 Mm.6209 NM_023709 ENSMUSG00000031981 Capn9 2200003B16Rik|GC36|nCL-4|nCL4 calpain 9 0.006410 0.560510 -5.018260 chr10-88 chr10 118900847 118901003 + 66.0 NA intron (NM_133442, intron 1 of 21) intron (NM_133442, intron 1 of 21) 43552 NM_133442 74053 Mm.196692 NM_028736 ENSMUSG00000034813 Grip1 4931400F03Rik|KIAA4223|eb|mKIAA4223 glutamate receptor interacting protein 1 0.019231 0.464968 -7.675452 chr1-187 chr1 185761859 185762015 + 66.0 NA intron (NM_022019, intron 2 of 3) intron (NM_022019, intron 2 of 3) 26221 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5 dual specificity phosphatase 10 0.000000 0.401274 -2.650739 chr3-93 chr3 32429361 32429517 + 66.0 NA Intergenic Intergenic -127598 NR_027966 67576 Mm.435324 NR_027966 4930429B21Rik - RIKEN cDNA 4930429B21 gene 0.000000 0.560510 -5.857752 chr7-72 chr7 129597644 129597800 + 66.0 NA Intergenic MLT1K|LTR|MaLR 214712 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|MGC47139|mKIAA1351 WD repeat domain 11 0.006410 0.388535 -1.494514 chr5-158 chr5 115056283 115056439 + 66.0 NA intron (NM_026718, intron 6 of 14) intron (NM_026718, intron 6 of 14) 18614 NR_027818 66236 Mm.268546 XM_001478355 ENSMUSG00000072694 1500011B03Rik AI415201|AV141149|AW556386 RIKEN cDNA 1500011B03 gene 0.006410 0.503185 -5.620886 chr5-145 chr5 19773612 19773768 + 66.0 NA intron (NM_015823, intron 5 of 21) intron (NM_015823, intron 5 of 21) 354349 NM_015823 50791 Mm.441283 XM_001000876 ENSMUSG00000040003 Magi2 Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.044872 0.636943 -5.365973 chrX-15 chrX 36501015 36501171 + 66.0 NA Intergenic Zaphod|DNA|Tip100 -392862 NM_001191032 664704 Mm.373409 NM_001191032 Cypt14 - cysteine-rich perinuclear theca 14 0.006410 0.312102 3.627691 chr5-144 chr5 16144125 16144281 + 66.0 NA Intergenic L1MA9|LINE|L1 78830 NM_010427 15234 Mm.267078 NM_010427 ENSMUSG00000028864 Hgf C230052L06Rik|HGF/SF|NK1|NK2|SF/HGF hepatocyte growth factor 0.000000 0.356688 0.800164 chr2-116 chr2 92697331 92697487 + 66.0 NA Intergenic Intergenic -18530 NM_030725 80976 Mm.33490 NM_030725 ENSMUSG00000027220 Syt13 5730409J20Rik|AI549909|mKIAA1427 synaptotagmin XIII 0.000000 0.388535 -6.863916 chr1-186 chr1 172375266 172375422 + 66.0 NA intron (NM_001109985, intron 1 of 9) intron (NM_001109985, intron 1 of 9) 18441 NM_027528 70729 Mm.65316 NM_001109985 ENSMUSG00000038473 Nos1ap 6330408P19Rik|Capon nitric oxide synthase 1 (neuronal) adaptor protein 0.006410 0.464968 3.485799 chr9-132 chr9 94336075 94336136 + 66.0 NA intron (NM_001033145, intron 1 of 2) intron (NM_001033145, intron 1 of 2) 11328 NM_001033145 68861 Mm.258746 NM_001033145 ENSMUSG00000045414 1190002N15Rik GoPro49 RIKEN cDNA 1190002N15 gene 0.000000 0.322581 -4.839192 chr6-74 chr6 48397188 48397344 + 66.0 NA exon (NM_173428, exon 42 of 103) exon (NM_173428, exon 42 of 103) 19452 NM_173428 243369 Mm.25039 NM_173428 ENSMUSG00000029797 Sspo C79529|Scospondin SCO-spondin 0.019231 0.566879 3.198221 chr5-159 chr5 115781870 115782026 + 66.0 NA intron (NM_133915, intron 1 of 11) intron (NM_133915, intron 1 of 11) 14248 NM_133915 19303 Mm.18714 NM_011223 ENSMUSG00000029528 Pxn AW108311|AW123232|Pax paxillin 0.006410 0.554140 4.296466 chr4-126 chr4 94635847 94636003 + 66.0 NA Intergenic Intergenic -91685 NM_010591 16476 Mm.275071 NM_010591 ENSMUSG00000052684 Jun AP-1|Junc|c-jun Jun oncogene 0.012821 0.490446 -1.967139 chr5-155 chr5 104401879 104402035 + 66.0 NA Intergenic MER82|DNA|MER2_type -9056 NM_010080 666279 Mm.319832 NM_010080 ENSMUSG00000053268 Dspp Dmp2|Dmp3|Dpp|Dsp|MGC124498 dentin sialophosphoprotein 0.000000 0.394904 -4.853086 chr4-119 chr4 56144131 56144287 + 66.0 NA Intergenic Intergenic -590634 NM_010637 16600 Mm.4325 NM_010637 ENSMUSG00000003032 Klf4 EZF|Gklf|Zie Kruppel-like factor 4 (gut) 0.006410 0.445860 -1.793618 chr8-96 chr8 109158246 109158402 + 66.0 NA intron (NM_021491, intron 2 of 8) intron (NM_021491, intron 2 of 8) 58142 NM_145404 214572 Mm.446217 NM_145404 ENSMUSG00000060098 Prmt7 4933402B05Rik|BC006705|MGC7929 protein arginine N-methyltransferase 7 0.006410 0.560510 -3.829224 chr5-150 chr5 28463581 28463737 + 66.0 NA Intergenic Intergenic -32823 NM_010134 13799 Mm.4298 NM_010134 ENSMUSG00000039095 En2 BB131122|En-2 engrailed 2 0.006410 0.554140 -1.839592 chr12-95 chr12 41162009 41162165 + 66.0 NA intron (NM_172803, intron 8 of 52) intron (NM_172803, intron 8 of 52) 205612 NM_172803 238130 Mm.341423 NM_172803 ENSMUSG00000035954 Dock4 5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716 dedicator of cytokinesis 4 0.006410 0.464968 -3.272024 chr19-22 chr19 38409347 38409503 + 66.0 NA Intergenic Intergenic -51698 NM_175507 240660 Mm.262085 NM_175507 ENSMUSG00000044026 Tmem20 AA590464|D330039I19Rik transmembrane protein 20 0.012821 0.433121 1.090641 chr2-122 chr2 181473804 181473960 + 66.0 NA intron (NM_016775, intron 1 of 4) intron (NM_016775, intron 1 of 4) 23971 NM_016775 13002 Mm.391807 NM_016775 ENSMUSG00000000826 Dnajc5 2610314I24Rik|AU018536|Csp DnaJ (Hsp40) homolog, subfamily C, member 5 0.019231 0.420382 0.490168 chr1-176 chr1 91870180 91870336 + 66.0 NA Intergenic Intergenic -24510 NM_139152 208372 Mm.215164 NM_139152 ENSMUSG00000067081 Asb18 Asb-18 ankyrin repeat and SOCS box-containing 18 0.012821 0.528662 -4.113583 chr12-107 chr12 117101020 117101176 + 66.0 NA intron (NM_011215, intron 2 of 22) intron (NM_011215, intron 2 of 22) 173370 NM_011215 19276 Mm.206054 NM_011215 ENSMUSG00000056553 Ptprn2 4930425H11Rik|IA2beta|KIAA0387|PTP-NP|Phol|mKIAA0387|phogrin protein tyrosine phosphatase, receptor type, N polypeptide 2 0.000000 0.522293 -4.795755 chr4-125 chr4 91889251 91889407 + 66.0 NA Intergenic Intergenic -250090 NM_027034 69314 Mm.55891 XM_131510 ENSMUSG00000028533 Izumo3 1700011H22Rik IZUMO family member 3 0.012821 0.375796 2.310561 chr5-149 chr5 28124577 28124733 + 66.0 NA Intergenic RCHARR1|DNA|MER1_type -2529 NM_018878 55982 Mm.409895 NM_018878 ENSMUSG00000002221 Paxip1 D5Ertd149e|PTIP PAX interacting (with transcription-activation domain) protein 1 0.012821 0.414013 -1.834846 chr8-90 chr8 37015346 37015502 + 66.0 NA Intergenic Intergenic -40890 NM_001081279 52065 Mm.103246 NM_001081279 ENSMUSG00000070056 Mfhas1 2310066G09Rik|D8Ertd91e malignant fibrous histiocytoma amplified sequence 1 0.006410 0.388535 -0.622579 chr3-101 chr3 128963987 128964143 + 66.0 NA Intergenic Intergenic -227874 NM_011098 18741 Mm.246804 NM_001042502 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1a|Brx1b|Munc30|Otlx2|Pitx2a|Pitx2b|Pitx2c|Pitx2cbeta|Ptx2|Rieg|solurshin paired-like homeodomain transcription factor 2 0.006410 0.484076 0.490168 chr4-115 chr4 9592128 9592284 + 66.0 NA intron (NM_001177851, intron 1 of 12) intron (NM_001177851, intron 1 of 12) 4103 NM_001177851 65973 Mm.412008 NM_001177849 ENSMUSG00000028207 Asph 2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37 aspartate-beta-hydroxylase 0.006410 0.401274 2.275022 chr7-63 chr7 83457312 83457468 + 66.0 NA Intergenic Intergenic -3725 NM_177695 233424 Mm.333991 NM_177695 ENSMUSG00000038540 Tmc3 9030203A06 transmembrane channel-like gene family 3 0.006410 0.522293 -5.959632 chr11-121 chr11 101918319 101918475 + 66.0 NA Intergenic Intergenic -1007 NM_008918 19064 Mm.1269 NM_008918 ENSMUSG00000017316 Ppy AV061413|IGSPP|MGC123521|PP pancreatic polypeptide 0.025641 0.547771 -7.469554 chr2-119 chr2 153604653 153604809 + 66.0 NA TTS (NM_199303) TTS (NM_199303) -4939 NM_194357 378700 Mm.55392 NM_194357 ENSMUSG00000068008 Rya3 Lplunc3 antimicrobial peptide RYA3 0.000000 0.541401 -2.466514 chr19-20 chr19 14990288 14990444 + 66.0 NA Intergenic Intergenic -325364 NM_011600 21888 Mm.103638 NM_011600 ENSMUSG00000024642 Tle4 5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333 transducin-like enhancer of split 4, homolog of Drosophila E(spl) 0.006410 0.401274 0.055980 chr4-131 chr4 123451990 123452146 + 66.0 NA Intergenic Intergenic 32333 NM_017475 54170 Mm.473825 NM_017475 ENSMUSG00000028646 Rragc AU041672|Gtr2|MGC47404|RAGC|TIB929|YGR163W Ras-related GTP binding C 0.044872 0.598726 3.974607 chr2-110 chr2 33652016 33652172 + 66.0 NA intron (NM_175184, intron 4 of 9) intron (NM_175184, intron 4 of 9) 57861 NM_175184 72543 Mm.254914 NM_175184 ENSMUSG00000038740 Fam125b 2610200O14Rik|2610528K11Rik|AI414895 family with sequence similarity 125, member B 0.000000 0.356688 2.925589 chr13-65 chr13 95237234 95237390 + 66.0 NA intron (NM_172589, intron 2 of 3) intron (NM_172589, intron 2 of 3) 78764 NM_172589 218454 Mm.316553 NM_172589 ENSMUSG00000045312 Lhfpl2 6030465B15|AI447312|AW050335|mKIAA0206 lipoma HMGIC fusion partner-like 2 0.012821 0.509554 -2.943774 chr7-64 chr7 83711184 83711340 + 66.0 NA Intergenic Intergenic -40238 NM_029335 75556 Mm.17649 NM_029335 ENSMUSG00000011154 1700026D08Rik AW047638|AW551802 RIKEN cDNA 1700026D08 gene 0.025641 0.452229 -5.775382 chr4-136 chr4 150683831 150683987 + 66.0 NA intron (NM_001081557, intron 1 of 23) intron (NM_001081557, intron 1 of 23) 21648 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.006410 0.426752 -1.569388 chr5-147 chr5 23588111 23588267 + 66.0 NA Intergenic Intergenic -22465 NM_001161800 52323 Mm.273768 NM_001161800 ENSMUSG00000028986 Klhl7 2700038B03Rik|D5Ertd363e|SBBI26 kelch-like 7 (Drosophila) 0.012821 0.388535 -6.766818 chr17-89 chr17 39936220 39936376 + 66.0 NA Intergenic (TTCTG)n|Simple_repeat|Simple_repeat -47207 NM_001177584 100126778 Mm.422023 NM_001177584 Esp8 - exocrine gland-secreting peptide 8 0.000000 0.350318 -7.900853 chr6-85 chr6 146154174 146154330 + 66.0 NA intron (NM_010586, intron 44 of 55) intron (NM_010586, intron 44 of 55) 262947 NM_010656 16651 Mm.49689 NM_010656 ENSMUSG00000030255 Sspn Krag sarcospan 0.000000 0.509554 2.219957 chr7-67 chr7 118385167 118385323 + 66.0 NA Intergenic Intergenic -3200 NM_001105252 74424 Mm.11068 NM_001105252 ENSMUSG00000030650 Tmc5 4932443L08Rik|AU016085|MGC118178 transmembrane channel-like gene family 5 0.012821 0.445860 -1.078917 chr11-113 chr11 65842106 65842262 + 66.0 NA intron (NM_001099633, intron 34 of 68) intron (NM_001099633, intron 34 of 68) 142562 NM_001099633 237806 Mm.459279 XM_110968 ENSMUSG00000056752 Dnahc9 9030022M04|A230091C01|C230051G16|D11Ertd686e|DNAH9|KIAA0357|mKIAA0357 dynein, axonemal, heavy chain 9 0.006410 0.433121 1.130578 chr5-167 chr5 151091878 151091907 + 66.0 NA Intergenic Intergenic -129093 NM_013823 16591 Mm.6500 NM_013823 ENSMUSG00000058488 Kl alpha-kl klotho 0.000000 0.433333 -11.080215 chr14-35 chr14 106247514 106247670 + 66.0 NA Intergenic Intergenic 1255787 NM_198601 212085 Mm.452063 NM_198601 ENSMUSG00000022113 Trim52 4921513B05Rik tripartite motif-containing 52 0.000000 0.337580 -4.286182 chr5-148 chr5 26840583 26840739 + 66.0 NA Intergenic HAL1|LINE|L1 -16560 NR_029445 75942 Mm.50087 XM_131958 ENSMUSG00000029044 4930584F24Rik 1700001J09Rik|4930522C06Rik RIKEN cDNA 4930584F24 gene 0.000000 0.388535 2.774508 chr17-81 chr17 28139210 28139366 + 66.0 NA intron (NM_010220, intron 7 of 10) intron (NM_010220, intron 7 of 10) -46556 NM_021478 22157 Mm.42102 NM_021478 ENSMUSG00000037446 Tulp1 Tulp1l tubby like protein 1 0.006410 0.445860 1.073378 chr9-134 chr9 121285346 121285502 + 66.0 NA intron (NM_175114, intron 3 of 15) intron (NM_175114, intron 3 of 15) 58963 NM_031161 12424 Mm.2619 NM_031161 ENSMUSG00000032532 Cck - cholecystokinin 0.000000 0.566879 1.389710 chr12-99 chr12 81740283 81740439 + 66.0 NA intron (NM_178682, intron 1 of 5) intron (NM_178682, intron 1 of 5) 30955 NM_178682 217684 Mm.479895 NM_178682 ENSMUSG00000021133 4933426M11Rik mKIAA0247 RIKEN cDNA 4933426M11 gene 0.000000 0.375796 11.875897 chr1-167 chr1 37513056 37513212 + 66.0 NA Intergenic Intergenic -32329 NM_173870 269181 Mm.447744 NM_173870 ENSMUSG00000026110 Mgat4a 9530018I07Rik|GnT-IVa mannoside acetylglucosaminyltransferase 4, isoenzyme A 0.000000 0.452229 -4.241501 chr13-61 chr13 46545412 46545568 + 66.0 NA intron (NM_026056, intron 3 of 12) intron (NM_026056, intron 3 of 12) 32616 NM_026056 67252 Mm.44529 NM_026056 ENSMUSG00000021373 Cap2 2810452G09Rik|AV045235 CAP, adenylate cyclase-associated protein, 2 (yeast) 0.019231 0.477707 1.336189 chr15-61 chr15 72433682 72433838 + 66.0 NA intron (NM_029640, intron 20 of 21) intron (NM_029640, intron 20 of 21) -60225 NM_001033876 223604 Mm.386856 NM_001033876 ENSMUSG00000036760 Kcnk9 Task3 potassium channel, subfamily K, member 9 0.032051 0.452229 -9.191611 chr3-103 chr3 148774712 148774868 + 66.0 NA intron (NM_001081298, intron 13 of 23) intron (NM_001081298, intron 13 of 23) 117231 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.019231 0.439490 -4.999917 chr15-59 chr15 38805428 38805584 + 66.0 NA Intergenic Intergenic -30847 NM_001162494 14368 Mm.4769 NM_001162494 ENSMUSG00000022297 Fzd6 Fz6 frizzled homolog 6 (Drosophila) 0.000000 0.477707 -4.014637 chr1-168 chr1 40561802 40561958 + 66.0 NA intron (NM_177084, intron 8 of 11) intron (NM_177084, intron 8 of 11) 37108 NM_177084 110895 Mm.108602 NM_177084 ENSMUSG00000026065 Slc9a4 AW990558|D730009J23Rik|NHE4 solute carrier family 9 (sodium/hydrogen exchanger), member 4 0.000000 0.375796 -2.390134 chr8-95 chr8 75210671 75210827 + 66.0 NA Intergenic Intergenic -37301 NM_008452 16598 Mm.26938 NM_008452 ENSMUSG00000055148 Klf2 Lklf Kruppel-like factor 2 (lung) 0.000000 0.490446 3.904117 chr11-108 chr11 3098934 3099090 + 66.0 NA Intergenic B3|SINE|B2 -3343 NM_001166548 74203 Mm.255649 NM_001166547 ENSMUSG00000020454 Eif4enif1 2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e eukaryotic translation initiation factor 4E nuclear import factor 1 0.000000 0.445860 -0.842920 chr6-73 chr6 14095001 14095157 + 66.0 NA Intergenic Intergenic -273596 NR_024619 66520 Mm.29615 NR_024619 2610001J05Rik C79299|MGC99440 RIKEN cDNA 2610001J05 gene 0.006410 0.369427 -3.339463 chr13-63 chr13 59106481 59106637 + 66.0 NA intron (NM_001025074, intron 16 of 17) intron (NM_001025074, intron 16 of 17) 289104 NM_001025074 18212 Mm.130054 NM_001025074 ENSMUSG00000055254 Ntrk2 AI848316|C030027L06Rik|Tkrb|trkB neurotrophic tyrosine kinase, receptor, type 2 0.000000 0.515924 3.663657 chr11-114 chr11 65859909 65860065 + 66.0 NA intron (NM_001099633, intron 29 of 68) intron (NM_001099633, intron 29 of 68) 124759 NM_001099633 237806 Mm.459279 XM_110968 ENSMUSG00000056752 Dnahc9 9030022M04|A230091C01|C230051G16|D11Ertd686e|DNAH9|KIAA0357|mKIAA0357 dynein, axonemal, heavy chain 9 0.032051 0.420382 -4.727047 chr17-77 chr17 10363179 10363335 + 66.0 NA intron (NM_027032, intron 4 of 4) intron (NM_027032, intron 4 of 4) -200539 NM_001159517 19317 Mm.393248 NM_001159516 ENSMUSG00000062078 Qk 1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1 quaking 0.006410 0.464968 -3.307542 chr15-58 chr15 36290802 36290958 + 66.0 NA Intergenic Intergenic -63144 NM_013923 30945 Mm.5181 NM_013923 ENSMUSG00000022280 Rnf19a AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp ring finger protein 19A 0.019231 0.477707 -3.544475 chr2-118 chr2 147672638 147672794 + 66.0 NA Intergenic Intergenic 65694 NM_010446 15376 Mm.938 NM_010446 ENSMUSG00000037025 Foxa2 HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b forkhead box A2 0.000000 0.515924 -2.862083 chr1-169 chr1 43358212 43358368 + 66.0 NA Intergenic Intergenic -32006 NM_010879 17974 Mm.476455 NM_010879 ENSMUSG00000066877 Nck2 4833426I10Rik|Grb4|NCKbeta non-catalytic region of tyrosine kinase adaptor protein 2 0.012821 0.414013 -3.587295 chrX-17 chrX 138220905 138221061 + 66.0 NA Intergenic Intergenic -7887 NM_019496 56068 Mm.143724 NM_019496 ENSMUSG00000042225 Ammecr1 6230420G18Rik Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) 0.000000 0.433121 -4.372875 chr5-151 chr5 33897309 33897465 + 66.0 NA Intergenic Intergenic 49105 NM_178390 74504 Mm.294695 NM_178390 ENSMUSG00000037339 Fam53a 2410018C17Rik|5430419M09Rik|Dntnp|KIAA4017 family with sequence similarity 53, member A 0.000000 0.496815 -3.179567 chr17-84 chr17 29165529 29165685 + 66.0 NA Intergenic Intergenic -52449 NM_008842 18712 Mm.478841 NM_008842 ENSMUSG00000024014 Pim1 Pim-1 proviral integration site 1 0.019231 0.560510 -5.402267 chr6-75 chr6 50690095 50690251 + 66.0 NA Intergenic Intergenic -106194 NM_021892 60531 Mm.157158 NM_021892 ENSMUSG00000029831 Npvf Rfrp neuropeptide VF precursor 0.019231 0.382166 -2.082241 chr12-103 chr12 103409571 103409727 + 66.0 NA intron (NM_001081017, intron 1 of 46) intron (NM_001081017, intron 1 of 46) 6711 NM_001081017 217843 Mm.387073 NM_001081017 ENSMUSG00000021198 Unc79 9030205A07Rik|KIAA1409|Kiaa1409 unc-79 homolog (C. elegans) 0.006410 0.452229 -6.018426 chr4-130 chr4 118617443 118617599 + 66.0 NA intron (NM_011400, intron 1 of 9) intron (NM_011400, intron 1 of 9) 10845 NM_011400 20525 Mm.21002 NM_011400 ENSMUSG00000028645 Slc2a1 Glut-1|Glut1 solute carrier family 2 (facilitated glucose transporter), member 1 0.012821 0.458599 -2.584271 chr11-130 chr11 51784151 51784307 + 61.0 NA Intergenic Intergenic -26824 NM_029976 52626 Mm.289456 NM_029976 ENSMUSG00000020392 Cdkn2aipnl A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520 CDKN2A interacting protein N-terminal like 0.025641 0.496815 -2.243484 chr1-195 chr1 79576533 79576689 + 61.0 NA Intergenic Intergenic -25615 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 0.019231 0.509554 -3.607271 chr5-189 chr5 135102955 135103111 + 61.0 NA Intergenic L1MEc|LINE|L1 -71152 NM_007925 13717 Mm.404771 NM_007925 ENSMUSG00000029675 Eln AI385707|AI480567|E030024M20Rik elastin 0.012821 0.369427 -5.656049 chr14-44 chr14 73696940 73697096 + 61.0 NA Intergenic Intergenic -14986 NM_001033439 380916 Mm.288868 NM_001033439 ENSMUSG00000068015 Lrch1 4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016 leucine-rich repeats and calponin homology (CH) domain containing 1 0.000000 0.445860 -6.518253 chr6-90 chr6 48269829 48269985 + 61.0 NA Intergenic Lx8|LINE|L1 -55264 NM_133922 77827 Mm.107646 NM_133922 ENSMUSG00000042810 Krba1 A930040G15Rik|AI448780 KRAB-A domain containing 1 0.000000 0.452229 -4.951841 chr3-116 chr3 128595994 128596150 + 61.0 NA Intergenic Intergenic -595867 NM_011098 18741 Mm.246804 NM_001042502 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1a|Brx1b|Munc30|Otlx2|Pitx2a|Pitx2b|Pitx2c|Pitx2cbeta|Ptx2|Rieg|solurshin paired-like homeodomain transcription factor 2 0.006410 0.445860 -2.807525 chr2-133 chr2 64068899 64069055 + 61.0 NA Intergenic Lx|LINE|L1 -170131 NM_021716 60344 Mm.438921 NM_021716 ENSMUSG00000075324 Fign fi|fidget fidgetin 0.006410 0.388535 -2.697426 chr6-103 chr6 106439918 106440074 + 61.0 NA intron (NM_001109749, intron 8 of 25) intron (NM_001109749, intron 8 of 25) 274818 NM_008370 16192 Mm.3448 NM_008370 ENSMUSG00000005364 Il5ra CD125|CDw125|Il5r interleukin 5 receptor, alpha 0.012821 0.420382 -9.060971 chr11-141 chr11 95193224 95193380 + 61.0 NA intron (NM_172543, intron 5 of 7) intron (NM_172543, intron 5 of 7) -7709 NM_016752 110172 Mm.4593 NM_016752 ENSMUSG00000020873 Slc35b1 Ugalt2 solute carrier family 35, member B1 0.006410 0.452229 -6.176522 chr13-72 chr13 34299418 34299574 + 61.0 NA intron (NM_001033167, intron 3 of 10) intron (NM_001033167, intron 3 of 10) 53151 NM_001033167 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik solute carrier family 22, member 23 0.000000 0.503185 3.198230 chr9-162 chr9 107126055 107126211 + 61.0 NA intron (NM_178907, intron 2 of 10) intron (NM_178907, intron 2 of 10) 21845 NM_178907 102626 Mm.445242 NM_178907 ENSMUSG00000032577 Mapkapk3 3PK|AI874665|MAPKAP3|MK3|MapkKapk3 mitogen-activated protein kinase-activated protein kinase 3 0.006410 0.407643 -4.525819 chr19-27 chr19 4073914 4074070 + 61.0 NA Intergenic RLTR22_Mur|LTR|ERVK -8495 NM_001160253 29866 Mm.46268 NM_001160252 ENSMUSG00000024857 Cabp2 MGC129493 calcium binding protein 2 0.000000 0.471338 -10.998668 chr2-146 chr2 174451018 174451174 + 61.0 NA Intergenic Intergenic 47385 NM_007903 13616 Mm.9478 NM_007903 ENSMUSG00000027524 Edn3 114-CH19|114CH19|ls|tmgc48 endothelin 3 0.012821 0.541401 -0.921178 chr4-141 chr4 48000764 48000920 + 61.0 NA Intergenic Intergenic -71505 NM_015743 18124 Mm.247261 NM_015743 ENSMUSG00000028341 Nr4a3 AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC nuclear receptor subfamily 4, group A, member 3 0.025641 0.598726 -2.725932 chr6-91 chr6 61114153 61114309 + 61.0 NA intron (NM_183310, intron 1 of 10) intron (NM_183310, intron 1 of 10) 4329 NM_183310 232035 Mm.376946 XM_908676 ENSMUSG00000039578 Fam190a 6230405M12Rik|C130092O11Rik|MGC130404|MGC130405 family with sequence similarity 190, member A 0.019231 0.471338 -0.800221 chr9-161 chr9 105981965 105982121 + 61.0 NA Intergenic (TCCTG)n|Simple_repeat|Simple_repeat -27251 NM_026763 68553 Mm.28854 NM_026763 ENSMUSG00000032572 Col6a4 1110001D15Rik|AI413310|AU023415|Dvwa|EG235580 collagen, type VI, alpha 4 0.006410 0.503185 -2.072309 chr8-120 chr8 129621494 129621650 + 61.0 NA Intergenic Intergenic -142046 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.025641 0.414013 -2.335121 chr9-157 chr9 72723671 72723827 + 61.0 NA intron (NM_028116, intron 1 of 2) intron (NM_028116, intron 1 of 2) 968 NM_028116 72135 Mm.273605 NM_028116 ENSMUSG00000034910 Pygo1 2600014C22Rik pygopus 1 0.000000 0.363057 -4.535811 chr12-124 chr12 108329042 108329198 + 61.0 NA Intergenic Intergenic 122101 NM_001079883 58208 Mm.392694 NM_001079883 ENSMUSG00000048251 Bcl11b 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 B-cell leukemia/lymphoma 11B 0.038462 0.547771 -3.798277 chr7-82 chr7 81918245 81918401 + 61.0 NA Intergenic Intergenic -52511 NM_007562 12173 Mm.243802 NM_007562 ENSMUSG00000025105 Bnc1 AI047752|AW546376|Bnc basonuclin 1 0.006410 0.394904 0.076849 chr5-175 chr5 65030146 65030302 + 61.0 NA Intergenic Intergenic -52433 NM_008453 16599 Mm.439720 NM_008453 ENSMUSG00000029178 Klf3 9930027G08Rik|AL024007|Bklf|MGC151315|Tef-2 Kruppel-like factor 3 (basic) 0.012821 0.439490 -0.454664 chr4-156 chr4 141606255 141606411 + 61.0 NA Intergenic Intergenic -94856 NM_001109685 71529 Mm.477412 NM_001109684 ENSMUSG00000040606 9030409G11Rik 2310007B04Rik|AI256607|AI666764|AW061099|Kaz|Kazrin RIKEN cDNA 9030409G11 gene 0.006410 0.554140 -4.918371 chr5-170 chr5 27990768 27990924 + 61.0 NA intron (NM_001136060, intron 12 of 25) intron (NM_001136060, intron 12 of 25) 131280 NM_018878 55982 Mm.409895 NM_018878 ENSMUSG00000002221 Paxip1 D5Ertd149e|PTIP PAX interacting (with transcription-activation domain) protein 1 0.006410 0.420382 -3.667021 chr9-149 chr9 54586277 54586433 + 61.0 NA Intergenic Intergenic 23411 NM_013496 12903 Mm.34797 NM_013496 ENSMUSG00000032291 Crabp1 AI326249|Crabp-1|CrabpI|Rbp-5 cellular retinoic acid binding protein I 0.006410 0.407643 0.054583 chr1-199 chr1 93702858 93703014 + 61.0 NA Intergenic Intergenic 71054 NM_007855 13345 Mm.9474 NM_007855 ENSMUSG00000007805 Twist2 Dermo1|bHLHa39 twist homolog 2 (Drosophila) 0.019231 0.541401 -1.226490 chr8-121 chr8 129640468 129640624 + 61.0 NA Intergenic Intergenic -161020 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.006410 0.471338 -2.762800 chr4-138 chr4 22065040 22065196 + 61.0 NA intron (NM_175234, intron 4 of 5) intron (NM_175234, intron 4 of 5) 42958 NM_175234 76132 Mm.159689 NM_175234 6230409E13Rik AW742931 RIKEN cDNA 6230409E13 gene 0.000000 0.439490 -2.378097 chr8-104 chr8 12091382 12091538 + 61.0 NA Intergenic Intergenic 250968 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.019231 0.401274 -4.134726 chr3-109 chr3 81691762 81691918 + 61.0 NA Intergenic Intergenic -326702 NM_177662 229445 Mm.254642 NM_177662 ENSMUSG00000028015 Ctso A330105D01Rik|A430056C07|AI118514 cathepsin O 0.000000 0.394904 -4.363957 chr7-83 chr7 97643204 97643360 + 61.0 NA Intergenic Intergenic -29843 NM_175105 66333 Mm.29756 NM_175105 ENSMUSG00000042797 Aqp11 1700015P13Rik|AI648923|MGC144511|MGC144512 aquaporin 11 0.019231 0.560510 2.930863 chr2-138 chr2 113280130 113280286 + 61.0 NA intron (NM_001043322, intron 5 of 18) intron (NM_001043322, intron 5 of 18) 151634 NM_010230 14260 Mm.4938 NM_001043322 ENSMUSG00000044042 Fmn1 BB164513|Fmn|formin-1|ld formin 1 0.032051 0.535032 1.596371 chr10-106 chr10 94808534 94808690 + 61.0 NA Intergenic B1_Mur2|SINE|Alu 36359 NM_001168657 216233 Mm.477665 NM_001168655 ENSMUSG00000020027 Socs2 8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|MGC118106|SOCS-2|SSI-2|hg suppressor of cytokine signaling 2 0.000000 0.484076 3.696309 chr11-126 chr11 3066655 3066811 + 61.0 NA intron (NM_030207, intron 7 of 32) intron (NM_030207, intron 7 of 32) 26733 NM_030207 78887 Mm.320785 NM_030207 ENSMUSG00000023764 Sfi1 2310047I15Rik|RP23-191E3.10|mKIAA0542 Sfi1 homolog, spindle assembly associated (yeast) 0.000000 0.503185 -2.770621 chr12-123 chr12 104843300 104843456 + 61.0 NA Intergenic (GAAAA)n|Simple_repeat|Simple_repeat 30908 NM_010351 14836 Mm.129 NM_010351 ENSMUSG00000021095 Gsc - goosecoid homeobox 0.000000 0.420382 -5.725527 chr10-111 chr10 120646952 120647108 + 61.0 NA Intergenic Intergenic 67219 NM_029057 74694 Mm.233833 XM_001481269 ENSMUSG00000052302 Tbc1d30 4930505D03Rik TBC1 domain family, member 30 0.038462 0.503185 -5.919250 chr19-29 chr19 9054958 9055114 + 61.0 NA Intergenic Intergenic -1292 NM_009643 66395 Mm.392302 NM_001039959 ENSMUSG00000069833 Ahnak 1110004P15Rik|2310047C17Rik|AA589382|AV091586|DY6 AHNAK nucleoprotein (desmoyokin) 0.006410 0.535032 -3.829081 chr8-116 chr8 122168013 122168169 + 61.0 NA intron (NM_019707, intron 10 of 13) intron (NM_019707, intron 10 of 13) -62423 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 0.000000 0.496815 -5.147332 chr3-111 chr3 86767347 86767503 + 61.0 NA intron (NM_001077688, intron 47 of 54) intron (NM_001077688, intron 47 of 54) -133215 NM_011839 23937 Mm.389466 NM_011839 ENSMUSG00000057777 Mab21l2 - mab-21-like 2 (C. elegans) 0.012821 0.375796 2.997217 chr17-94 chr17 7591745 7591901 + 61.0 NA exon (NM_001081416, exon 14 of 20) exon (NM_001081416, exon 14 of 20) 51325 NM_001081416 68655 Mm.379161 NM_001081416 ENSMUSG00000071984 Fndc1 1110027O12Rik|1110051A18Rik|KIAA1866|mKIAA1866 fibronectin type III domain containing 1 0.038462 0.554140 -5.485896 chr15-69 chr15 36627038 36627194 + 61.0 NA Intergenic Intergenic -73554 NM_008774 18458 Mm.371570 NM_008774 ENSMUSG00000022283 Pabpc1 PABP|Pabp1|PabpI|Pabpl1|ePAB poly(A) binding protein, cytoplasmic 1 0.000000 0.452229 -3.540226 chr14-43 chr14 67881286 67881442 + 61.0 NA Intergenic Intergenic -101254 NM_009285 20855 Mm.20911 NM_009285 ENSMUSG00000014813 Stc1 Stc stanniocalcin 1 0.012821 0.541401 3.282019 chr13-67 chr13 13361904 13362060 + 61.0 NA Intergenic Intergenic -20552 NM_010748 17101 Mm.342337 NM_010748 ENSMUSG00000019726 Lyst D13Sfk13|beige|bg lysosomal trafficking regulator 0.000000 0.477707 -3.564354 chr12-122 chr12 102166011 102166167 + 61.0 NA intron (NM_011812, intron 7 of 10) intron (NM_011812, intron 7 of 10) -46537 NM_001082976 74413 Mm.390521 NM_001082976 ENSMUSG00000021187 Tc2n 4933406D09Rik|Mtac2d1|Tac2-N tandem C2 domains, nuclear 0.012821 0.503185 3.531672 chr2-123 chr2 4464391 4464547 + 61.0 NA intron (NM_001177843, intron 11 of 23) intron (NM_001177843, intron 11 of 23) -12556 NM_001177844 209630 Mm.480116 NM_001177843 ENSMUSG00000026657 Frmd4a 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294 FERM domain containing 4A 0.012821 0.458599 -7.124355 chr6-106 chr6 114306772 114306928 + 61.0 NA Intergenic (CACAG)n|Simple_repeat|Simple_repeat -56680 NM_008285 15465 Mm.333327 NM_008285 ENSMUSG00000053004 Hrh1 Bphs histamine receptor H1 0.000000 0.605096 -7.477441 chr10-110 chr10 120609241 120609397 + 61.0 NA Intergenic Intergenic 104930 NM_029057 74694 Mm.233833 XM_001481269 ENSMUSG00000052302 Tbc1d30 4930505D03Rik TBC1 domain family, member 30 0.006410 0.464968 6.286048 chr10-105 chr10 92705646 92705802 + 61.0 NA intron (NM_013508, intron 2 of 4) intron (NM_013508, intron 2 of 4) 35234 NM_013508 13713 Mm.4454 NM_013508 ENSMUSG00000008398 Elk3 D430049E23Rik|Erp|Etrp|Net|Sap-2 ELK3, member of ETS oncogene family 0.025641 0.585987 -4.788072 chr4-154 chr4 132232640 132232796 + 61.0 NA Intergenic Intergenic -13452 NM_010208 14191 Mm.271665 NM_010208 ENSMUSG00000028874 Fgr - Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog 0.006410 0.566879 3.015077 chr6-109 chr6 145743680 145743836 + 61.0 NA Intergenic Intergenic -21783 NM_027760 71323 Mm.444985 NM_027760 ENSMUSG00000030259 Rassf8 5133400D11Rik|AA815821|AW123240|Hoj1|MGC144731|MGC144732|mHoj-1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.006410 0.528662 -2.221738 chr3-105 chr3 8000028 8000184 + 61.0 NA Intergenic Intergenic -403606 NM_008371 16196 Mm.3825 NM_008371 ENSMUSG00000040329 Il7 A630026I06Rik|Il-7|MGC129342|hlb368 interleukin 7 0.000000 0.401274 -3.833992 chr14-40 chr14 33893498 33893654 + 61.0 NA intron (NM_008166, intron 4 of 15) intron (NM_008166, intron 4 of 15) 169876 NR_029774 723847 NR_029774 Mir346 Mirn346|mmu-mir-346 microRNA 346 0.012821 0.426752 2.295745 chr17-92 chr17 5044826 5044982 + 61.0 NA intron (NM_001085355, intron 2 of 19) intron (NM_001085355, intron 2 of 19) 93349 NM_001085355 239985 Mm.133401 XM_001474848 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235 AT rich interactive domain 1B (SWI-like) 0.006410 0.496815 -2.889672 chr9-158 chr9 84774314 84774470 + 61.0 NA Intergenic Intergenic 349450 NM_001160378 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.012821 0.477707 -2.529865 chr1-192 chr1 61171782 61171800 + 61.0 NA Intergenic Intergenic 249332 NM_017480 54167 Mm.42044 NM_017480 ENSMUSG00000026009 Icos AILIM|H4|Ly115 inducible T-cell co-stimulator 0.111111 0.473684 -0.066097 chr7-85 chr7 121095005 121095161 + 61.0 NA Intergenic L2|LINE|L2 -88360 NM_001081327 195646 Mm.247449 NM_001081327 ENSMUSG00000046321 Hs3st2 6430516N12Rik|A830061E14Rik|AW491345 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 0.012821 0.407643 0.162160 chr2-136 chr2 91978076 91978232 + 61.0 NA Intergenic Intergenic -6866 NM_138755 192285 Mm.450689 NM_001109690 ENSMUSG00000058318 Phf21a 80kDa|Bhc|Bhc80|D030065N23Rik|MGC123676|MGC29190|PFTF1 PHD finger protein 21A 0.000000 0.401274 -8.265759 chr13-76 chr13 60286797 60286953 + 61.0 NA Intergenic Intergenic 71782 NR_036449 328264 Mm.38101 NM_177810 ENSMUSG00000050765 Gm5084 A030007L22|EG328264 predicted gene 5084 0.006410 0.464968 6.061831 chr2-127 chr2 32656685 32656841 + 61.0 NA intron (NM_001113569, intron 1 of 19) intron (NM_001113569, intron 1 of 19) 12478 NM_009295 20910 Mm.278865 NM_001113569 ENSMUSG00000026797 Stxbp1 AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1 syntaxin binding protein 1 0.006410 0.560510 0.447030 chr5-174 chr5 49873021 49873177 + 61.0 NA Intergenic B1_Mus2|SINE|Alu 474145 NM_133911 70693 Mm.272974 XM_132089 ENSMUSG00000029090 Gpr125 3830613O22Rik|AU044632 G protein-coupled receptor 125 0.006410 0.477707 1.023659 chr7-74 chr7 29120417 29120573 + 61.0 NA intron (NM_001081028, intron 3 of 22) intron (NM_001081028, intron 3 of 22) 93725 NM_001081028 74206 Mm.447042 NM_001081028 ENSMUSG00000030583 Sipa1l3 2610511M17Rik signal-induced proliferation-associated 1 like 3 0.006410 0.477707 3.597208 chr12-118 chr12 75722670 75722731 + 61.0 NA Intergenic GSAT_MM|Satellite|Satellite 373472 NM_172805 238271 Mm.44465 NM_172805 ENSMUSG00000034402 Kcnh5 Eag2 potassium voltage-gated channel, subfamily H (eag-related), member 5 0.016393 0.322581 -10.606437 chr5-180 chr5 99477419 99477575 + 61.0 NA intron (NM_145839, intron 4 of 13) intron (NM_145839, intron 4 of 13) 15732 NM_181318 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.012821 0.414013 0.765012 chr12-127 chr12 111245729 111245885 + 61.0 NA Intergenic Intergenic 42939 NM_011973 26448 Mm.140948 NM_011973 ENSMUSG00000056458 Stk30 MGC107277|MGC46883|MOK|RAGE1|Rage serine/threonine kinase 30 0.032051 0.522293 -5.202533 chr6-94 chr6 90862906 90863062 + 61.0 NA Intergenic Intergenic -87357 NM_001134384 232227 Mm.473438 XM_001479632 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 IQ motif and Sec7 domain 1 0.019231 0.464968 -3.228306 chr8-118 chr8 125695783 125695939 + 61.0 NA intron (NM_144932, intron 7 of 9) intron (NM_144932, intron 7 of 9) -31806 NM_001100618 100043225 Mm.390074 XM_001001934 ENSMUSG00000074046 Gm16378 EG434356 predicted gene 16378 0.000000 0.445860 -7.553445 chr4-146 chr4 94689943 94690099 + 61.0 NA Intergenic Intergenic -145781 NM_010591 16476 Mm.275071 NM_010591 ENSMUSG00000052684 Jun AP-1|Junc|c-jun Jun oncogene 0.006410 0.407643 1.668272 chr18-78 chr18 51207136 51207292 + 61.0 NA Intergenic L1MC1|LINE|L1 -35868 NM_001081224 71373 Mm.477237 NM_001081224 ENSMUSG00000073565 Prr16 5430406M13Rik|AI607429 proline rich 16 0.006410 0.414013 6.504355 chr2-124 chr2 7162748 7162904 + 61.0 NA intron (NM_001110231, intron 2 of 15) intron (NM_001110231, intron 2 of 15) 151027 NM_001110232 14007 Mm.411896 NM_001110228 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 0.006410 0.464968 -1.675642 chr6-100 chr6 97825173 97825329 + 61.0 NA intron (NM_001113198, intron 1 of 9) intron (NM_001113198, intron 1 of 9) 52731 NM_001113198 17342 Mm.454504 NM_001113198 ENSMUSG00000035158 Mitf Bhlhe32|MGC124309|MGC124310|Vitiligo|Wh|bw|mi|vit microphthalmia-associated transcription factor 0.006410 0.414013 -8.953482 chr9-152 chr9 61694551 61694707 + 61.0 NA Intergenic Intergenic 17887 NM_018853 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik|MGC103133 ribosomal protein, large, P1 0.006410 0.579618 -5.136924 chr9-159 chr9 96965463 96965619 + 61.0 NA Intergenic MER20B|DNA|MER1_type -45148 NM_138756 192287 Mm.475433 NM_138756 ENSMUSG00000032449 Slc25a36 C330005L02Rik solute carrier family 25, member 36 0.006410 0.439490 0.704889 chr7-86 chr7 132512489 132512645 + 61.0 NA intron (NM_029609, intron 6 of 6) intron (NM_029609, intron 6 of 6) 63582 NM_029609 76429 Mm.276721 NM_029609 ENSMUSG00000030946 Lhpp 2310007H09Rik phospholysine phosphohistidine inorganic pyrophosphate phosphatase 0.019231 0.624204 4.699008 chr3-113 chr3 125330278 125330434 + 61.0 NA Intergenic Intergenic -65756 NM_022565 64580 Mm.444289 NM_022565 ENSMUSG00000027971 Ndst4 4930439H17Rik N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 0.019231 0.439490 -1.256748 chr11-128 chr11 43101190 43101346 + 61.0 NA intron (NM_176999, intron 22 of 22) intron (NM_176999, intron 22 of 22) 107969 NM_176999 319767 Mm.252339 NM_176999 ENSMUSG00000055415 Atp10b 5930426O13Rik|9030605H24Rik ATPase, class V, type 10B 0.012821 0.375796 -1.546048 chr18-82 chr18 89155905 89156061 + 61.0 NA intron (NM_175542, intron 19 of 48) intron (NM_175542, intron 19 of 48) 50001 NM_175542 246102 Mm.772 NM_175542 ENSMUSG00000023066 Rttn 4921538A15Rik|AI666264|C530033I08Rik|D230040K24 rotatin 0.000000 0.363057 -2.608285 chr14-39 chr14 23735053 23735209 + 61.0 NA Intergenic Intergenic 411986 NM_011297 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 MGC107549 ribosomal protein S24 0.025641 0.547771 -7.175194 chr10-95 chr10 40113485 40113641 + 61.0 NA intron (NM_001168304, intron 2 of 12) intron (NM_001168304, intron 2 of 12) 74840 NM_198164 78334 Mm.476817 NM_001168304 ENSMUSG00000038481 Cdk19 2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028 cyclin-dependent kinase 19 0.012821 0.503185 -1.538865 chr10-103 chr10 81001151 81001307 + 61.0 NA intron (NM_053254, intron 4 of 13) intron (NM_053254, intron 4 of 13) 2800 NM_053254 114606 Mm.206764 NM_053254 ENSMUSG00000034758 Tle6 1810057E06Rik|Grg6 transducin-like enhancer of split 6, homolog of Drosophila E(spl) 0.006410 0.541401 -2.042791 chr9-141 chr9 36631954 36632110 + 61.0 NA Intergenic Intergenic 38703 NM_183171 235180 Mm.5264 NM_183171 ENSMUSG00000032118 Fez1 MGC19293|UNC-76|UNC76 fasciculation and elongation protein zeta 1 (zygin I) 0.000000 0.496815 -5.857752 chr5-185 chr5 114834046 114834202 + 61.0 NA intron (NM_001004180, intron 1 of 2) intron (NM_001004180, intron 1 of 2) 4875 NM_001004180 433940 Mm.194212 NM_001004180 ENSMUSG00000041930 BC057022 MGC67174 cDNA sequence BC057022 0.006410 0.611465 -5.340097 chr14-42 chr14 58399713 58399869 + 61.0 NA intron (NM_026908, intron 1 of 10) intron (NM_026908, intron 1 of 10) 4701 NM_026908 69008 Mm.179091 NM_026908 ENSMUSG00000021981 Cab39l 1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L calcium binding protein 39-like 0.000000 0.382166 -1.326195 chr8-103 chr8 12043526 12043682 + 61.0 NA Intergenic Intergenic 203112 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.038462 0.528662 -2.256701 chr16-66 chr16 66187947 66188103 + 61.0 NA Intergenic (TTCTG)n|Simple_repeat|Simple_repeat 454133 NM_028572 73569 Mm.25670 XM_001480406 Vgll3 1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2 vestigial like 3 (Drosophila) 0.006410 0.394904 -4.746119 chr6-88 chr6 44955934 44956090 + 61.0 NA Intergenic Intergenic -33655 NM_001004357 66797 Mm.477298 NM_001004357 ENSMUSG00000039419 Cntnap2 5430425M22Rik|Caspr2|mKIAA0868 contactin associated protein-like 2 0.019231 0.433121 -3.564354 chr2-140 chr2 136309631 136309787 + 61.0 NA Intergenic Intergenic 85948 NM_175667 319196 Mm.477841 NM_175667 ENSMUSG00000074771 Ankrd5 AV276460 ankyrin repeat domain 5 0.006410 0.452229 -6.909850 chr13-68 chr13 23284952 23285108 + 61.0 NA Intergenic (TTCTG)n|Simple_repeat|Simple_repeat 28328 NM_001083311 100036518 Mm.455332 XM_001475523 ENSMUSG00000069280 Vmn1r223 Gm11330|OTTMUSG00000000541 vomeronasal 1 receptor 223 0.000000 0.363057 -8.243493 chr3-115 chr3 127922009 127922165 + 61.0 NA Intergenic Intergenic -33742 NM_027482 70617 Mm.317049 NM_027482 ENSMUSG00000050549 5730508B09Rik 2700063A17Rik|C80506|MGC151168|MGC151170 RIKEN cDNA 5730508B09 gene 0.032051 0.515924 -5.001350 chr11-137 chr11 78947885 78948041 + 61.0 NA intron (NM_013571, intron 1 of 17) intron (NM_013571, intron 1 of 17) 14586 NM_013571 16706 Mm.4745 NM_013571 ENSMUSG00000018334 Ksr1 AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb kinase suppressor of ras 1 0.006410 0.573248 -5.359476 chr5-179 chr5 99447801 99447957 + 61.0 NA Intergenic Intergenic 45350 NM_181318 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.006410 0.324841 -3.039560 chr5-194 chr5 144756491 144756647 + 61.0 NA Intergenic L1MC4a|LINE|L1 -42844 NM_016789 53324 Mm.10099 NM_016789 ENSMUSG00000059991 Nptx2 Narp|np2 neuronal pentraxin 2 0.019231 0.426752 -4.381211 chr12-114 chr12 38526261 38526417 + 61.0 NA intron (NM_178681, intron 2 of 24) intron (NM_178681, intron 2 of 24) 135369 NM_178681 217480 Mm.126525 NM_178681 ENSMUSG00000036095 Dgkb 6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718 diacylglycerol kinase, beta 0.006410 0.369427 3.198230 chr6-102 chr6 100859569 100859725 + 61.0 NA Intergenic Intergenic 59912 NM_182939 232314 Mm.480664 NM_182939 ENSMUSG00000052144 Ppp4r2 BE691708|C230060M08Rik protein phosphatase 4, regulatory subunit 2 0.006410 0.503185 1.283864 chr2-132 chr2 56963719 56963875 + 61.0 NA Intergenic Intergenic -24408 NM_001139509 18227 Mm.3507 NM_001139509 ENSMUSG00000026826 Nr4a2 HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR nuclear receptor subfamily 4, group A, member 2 0.000000 0.522293 -7.633451 chr11-136 chr11 78383253 78383409 + 61.0 NA TTS (NM_008702) TTS (NM_008702) -16401 NM_133706 69071 Mm.29431 NM_133706 ENSMUSG00000037278 Tmem97 1810014L12Rik|AI115531|AL022956|D11Bhm182e|MGC102369 transmembrane protein 97 0.019231 0.426752 0.462786 chr4-144 chr4 83551858 83552014 + 61.0 NA Intergenic Intergenic 555161 NM_001081012 320226 Mm.180032 NM_001081012 ENSMUSG00000052407 4930473A06Rik 4930418J05Rik|A330015D16Rik RIKEN cDNA 4930473A06 gene 0.006410 0.464968 -2.171434 chr11-142 chr11 99066893 99067049 + 61.0 NA Intergenic Intergenic -6814 NM_172946 268481 Mm.133193 NM_172946 ENSMUSG00000035849 Krt222 6330509G02Rik|MGC100296 keratin 222 0.006410 0.420382 2.029446 chr18-75 chr18 32696266 32696422 + 61.0 NA intron (NM_001048207, intron 1 of 2) intron (NM_001048207, intron 1 of 2) 6700 NM_001048207 71683 Mm.292145 NM_001048207 ENSMUSG00000024380 Gypc 0610037F22Rik|Cd236r glycophorin C 0.000000 0.579618 -5.696009 chr1-201 chr1 128365512 128365668 + 61.0 NA intron (NM_176957, intron 2 of 12) intron (NM_176957, intron 2 of 12) -45117 NM_172484 210356 Mm.377234 NM_001081756 ENSMUSG00000049690 Nckap5 8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|MGC90557|Nap5 NCK-associated protein 5 0.000000 0.414013 3.646926 chr16-70 chr16 97330171 97330327 + 61.0 NA Intergenic Intergenic -54604 NM_031174 13508 Mm.328737 NM_031174 ENSMUSG00000050272 Dscam 4932410A21Rik Down syndrome cell adhesion molecule 0.019231 0.414013 -3.544474 chr17-116 chr17 30169712 30169868 + 55.9 NA intron (NM_027060, intron 6 of 10) intron (NM_027060, intron 6 of 10) -46598 NR_030688 623169 Mm.440508 XM_892956 Gm6402 EG623169 ribosomal protein S17 pseudogene 0.006410 0.509554 -3.023039 chr11-164 chr11 98784242 98784398 + 55.9 NA intron (NM_001176528, intron 3 of 7) intron (NM_001176528, intron 3 of 7) 7760 NM_001176528 19401 Mm.439744 NM_001176528 ENSMUSG00000037992 Rara Nr1b1|RAR|RARalpha1 retinoic acid receptor, alpha 0.032051 0.592357 -3.248646 chr13-95 chr13 63255951 63256107 + 55.9 NA intron (NM_028079, intron 12 of 14) intron (NM_028079, intron 12 of 14) -53676 NR_029530 387217 NR_029530 Mir23b Mirn23b|mmu-mir-23b microRNA 23b 0.025641 0.445860 -2.518273 chr12-160 chr12 117846316 117846472 + 55.9 NA Intergenic Intergenic -112093 NM_175930 217944 Mm.227642 NM_175930 ENSMUSG00000041992 Rapgef5 4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef Rap guanine nucleotide exchange factor (GEF) 5 0.012821 0.503185 -0.610229 chr2-149 chr2 6806466 6806622 + 55.9 NA intron (NM_001110229, intron 2 of 14) intron (NM_001110229, intron 2 of 14) -4276 NM_001160293 14007 Mm.411896 NM_001110228 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 0.012821 0.458599 -0.908613 chr12-138 chr12 40431995 40432151 + 55.9 NA Intergenic Intergenic 115726 NM_007487 11861 Mm.12723 NM_001039515 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A 0.012821 0.484076 3.696309 chr1-209 chr1 8312569 8312725 + 55.9 NA Intergenic RLTR15|LTR|ERVK 972297 NM_027671 71096 Mm.388998 NM_027671 ENSMUSG00000025909 Sntg1 4933426D16Rik|G1SYN|SYN4 syntrophin, gamma 1 0.000000 0.420382 0.723677 chr17-124 chr17 87285455 87285611 + 55.9 NA intron (NM_028639, intron 19 of 19) intron (NM_028639, intron 19 of 19) 50534 NM_029298 75467 Mm.50108 XM_001481211 ENSMUSG00000036557 1700011E24Rik - RIKEN cDNA 1700011E24 gene 0.000000 0.598726 -4.071437 chr17-123 chr17 81276994 81277150 + 55.9 NA Intergenic Intergenic -303661 NM_028138 72167 Mm.273257 XM_898870 ENSMUSG00000024246 Thumpd2 2810025A12Rik THUMP domain containing 2 0.006410 0.528662 -5.515039 chr2-174 chr2 163287305 163287461 + 55.9 NA Intergenic Intergenic -6371 NM_181734 76080 Mm.89828 NM_029512 ENSMUSG00000017679 Ttpal 3110080A02Rik|5830472M02Rik tocopherol (alpha) transfer protein-like 0.006410 0.490446 -3.490734 chr10-129 chr10 98002005 98002161 + 55.9 NA Intergenic L1MA5|LINE|L1 -342756 NM_026482 67972 Mm.471912 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 ATPase, Ca++ transporting, plasma membrane 1 0.006410 0.414013 -3.567814 chr12-146 chr12 76785947 76786103 + 55.9 NA intron (NM_001005510, intron 2 of 115) intron (NM_001005510, intron 2 of 115) 48868 NM_001005510 319565 Mm.26652 XM_001001846 ENSMUSG00000063450 Syne2 6820443O06Rik|AW546258|D12Ertd777e|MGC96690|NUA|Nesp2g|mKIAA1011 synaptic nuclear envelope 2 0.019231 0.484076 -3.278203 chr1-236 chr1 120905739 120905895 + 55.9 NA Intergenic Intergenic -24652 NM_001081125 14633 Mm.273292 NM_001081125 ENSMUSG00000048402 Gli2 AW546128 GLI-Kruppel family member GLI2 0.019231 0.554140 -6.202115 chr16-75 chr16 10798492 10798648 + 55.9 NA Intergenic Intergenic 49934 NM_001162932 223970 Mm.325777 NM_001033278 ENSMUSG00000037991 A630055G03Rik Gm537|Gm929|RMI2 RIKEN cDNA A630055G03 gene 0.000000 0.490446 -0.622579 chr4-168 chr4 62090571 62090727 + 55.9 NA intron (NM_019492, intron 4 of 19) intron (NM_019492, intron 4 of 19) -15383 NM_001081650 50780 Mm.286753 NM_001081650 ENSMUSG00000059810 Rgs3 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S regulator of G-protein signaling 3 0.006410 0.541401 -2.473671 chr3-141 chr3 154029798 154029954 + 55.9 NA intron (NM_001081263, intron 1 of 21) intron (NM_001081263, intron 1 of 21) 119055 NM_001081263 242259 Mm.239962 NM_001081263 ENSMUSG00000028360 Slc44a5 AA117069|Gm422 solute carrier family 44, member 5 0.012821 0.464968 -4.424357 chr10-113 chr10 8785556 8785712 + 55.9 NA Intergenic Intergenic -209374 NM_175155 70097 Mm.338275 NM_175155 ENSMUSG00000015305 Sash1 1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790 SAM and SH3 domain containing 1 0.012821 0.407643 2.467598 chr4-178 chr4 132456722 132456878 + 55.9 NA intron (NM_153423, intron 2 of 8) intron (NM_153423, intron 2 of 8) 27812 NM_008154 14748 Mm.4721 NM_008154 ENSMUSG00000049649 Gpr3 Gpcr20|Gpcr21|Gpcr3 G-protein coupled receptor 3 0.012821 0.407643 -4.197162 chr1-225 chr1 74740369 74740525 + 55.9 NA Intergenic Intergenic 15222 NM_009518 22409 Mm.5130 NM_009518 ENSMUSG00000026167 Wnt10a - wingless related MMTV integration site 10a 0.057692 0.707006 -1.562204 chr12-156 chr12 108619263 108619419 + 55.9 NA intron (NM_028262, intron 1 of 12) intron (NM_028262, intron 1 of 12) 7750 NM_028262 52690 Mm.159185 NM_028262 ENSMUSG00000056770 Setd3 2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e SET domain containing 3 0.000000 0.439490 -5.316233 chr1-217 chr1 60660366 60660522 + 55.9 NA Intergenic Intergenic -30489 NM_007642 12487 Mm.255003 NM_007642 ENSMUSG00000026012 Cd28 - CD28 antigen 0.012821 0.477707 -4.819313 chr9-184 chr9 101358422 101358473 + 55.9 NA Intergenic Intergenic -250352 NM_001161362 235542 Mm.335386 XM_001474396 ENSMUSG00000043154 Ppp2r3a 3222402P14Rik|A730042E07|MGC29057 protein phosphatase 2, regulatory subunit B'', alpha 0.058824 0.538462 -4.606475 chr1-210 chr1 21629078 21629234 + 55.9 NA intron (NM_023872, intron 1 of 13) intron (NM_023872, intron 1 of 13) 260450 NM_001113187 98582 Mm.326336 NM_001113187 Khdc1b AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c KH domain containing 1B 0.012821 0.375796 -1.400002 chr11-165 chr11 99092975 99093131 + 55.9 NA Intergenic Intergenic 8275 NM_029393 75706 Mm.46378 NM_029393 ENSMUSG00000020913 Krt24 2310058N18Rik|2310075C18Rik keratin 24 0.025641 0.541401 -4.206570 chr17-122 chr17 56879835 56879991 + 55.9 NA promoter-TSS (NM_019418) promoter-TSS (NM_019418) -392 NM_019418 50930 Mm.19131 NM_019418 ENSMUSG00000005824 Tnfsf14 HVEM-L|HVEML|LIGHT|LTg|Ly113 tumor necrosis factor (ligand) superfamily, member 14 0.012821 0.496815 -1.740110 chr18-91 chr18 54729201 54729357 + 55.9 NA Intergenic Intergenic 386270 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.012821 0.490446 0.716585 chr6-120 chr6 82713985 82714141 + 55.9 NA intron (NM_013820, intron 3 of 17) intron (NM_013820, intron 3 of 17) 26049 NM_013820 15277 Mm.469167 XM_001478074 ENSMUSG00000000628 Hk2 AI642394|HKII hexokinase 2 0.019231 0.452229 -10.223023 chr3-136 chr3 108053199 108053355 + 55.9 NA Intergenic L1ME3|LINE|L1 6524 NM_026672 68312 Mm.458189 NM_026672 ENSMUSG00000004035 Gstm7 0610005A07Rik|AI894236|Cd203c glutathione S-transferase, mu 7 0.012821 0.401274 -0.798566 chr4-169 chr4 80421898 80422054 + 55.9 NA intron (NM_026821, intron 1 of 1) intron (NM_026821, intron 1 of 1) 40060 NM_026821 52829 Mm.273986 NM_026821 ENSMUSG00000048706 D4Bwg0951e 1110029A09Rik|AV077978|AV175137|WI-13707|bM350F23.1 DNA segment, Chr 4, Brigham & Women's Genetics 0951 expressed 0.012821 0.477707 0.749237 chr13-102 chr13 111685034 111685190 + 55.9 NA Intergenic Intergenic 169191 NM_152804 20620 Mm.380 NM_152804 ENSMUSG00000021701 Plk2 Snk polo-like kinase 2 (Drosophila) 0.025641 0.560510 -5.340097 chr6-119 chr6 73241395 73241551 + 55.9 NA Intergenic Intergenic 63460 NM_019879 56451 Mm.29845 NM_019879 ENSMUSG00000052738 Suclg1 1500000I01Rik|Sucla1 succinate-CoA ligase, GDP-forming, alpha subunit 0.012821 0.375796 0.222274 chr4-171 chr4 101957655 101957811 + 55.9 NA intron (NM_001177983, intron 1 of 5) intron (NM_001177983, intron 1 of 5) -110258 NM_001177980 18578 Mm.20181 NM_001177980 ENSMUSG00000028525 Pde4b Dpde4|R74983|dunce phosphodiesterase 4B, cAMP specific 0.006410 0.433121 2.024076 chr1-235 chr1 108051580 108051736 + 55.9 NA intron (NM_133821, intron 1 of 16) intron (NM_133821, intron 1 of 16) 52243 NM_133821 98432 Mm.24115 XM_001475839 ENSMUSG00000044340 Phlpp1 AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606 PH domain and leucine rich repeat protein phosphatase 1 0.000000 0.414013 3.184833 chr7-103 chr7 100029720 100029876 + 55.9 NA Intergenic Intergenic -3561 NM_026010 67164 Mm.46777 NM_026010 ENSMUSG00000030725 Lipt2 2610209A20Rik lipoyl(octanoyl) transferase 2 (putative) 0.006410 0.515924 -5.656050 chr8-145 chr8 129791478 129791634 + 55.9 NA Intergenic Intergenic 40364 NM_024214 67952 Mm.380026 NM_024214 ENSMUSG00000058779 Tomm20 1810060K07Rik|BB284719|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 translocase of outer mitochondrial membrane 20 homolog (yeast) 0.000000 0.477707 0.573818 chr4-173 chr4 111174244 111174400 + 55.9 NA Intergenic Intergenic -43619 NM_026470 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash spermatogenesis associated 6 0.006410 0.433121 -5.852131 chr18-93 chr18 64192066 64192222 + 55.9 NA Intergenic Intergenic -187583 NM_009182 20451 Mm.252110 NM_009182 ENSMUSG00000056812 St8sia3 AI847333|ST8SiaIII|Siat8c ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 0.006410 0.547771 -5.922621 chr6-116 chr6 56833526 56833682 + 55.9 NA intron (NM_026004, intron 1 of 8) intron (NM_026004, intron 1 of 8) 19906 NM_026004 107569 Mm.158936 NM_026004 ENSMUSG00000029780 Nt5c3 1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36 5'-nucleotidase, cytosolic III 0.019231 0.509554 1.911255 chr14-52 chr14 105279679 105279835 + 55.9 NA Intergenic Intergenic 287952 NM_198601 212085 Mm.452063 NM_198601 ENSMUSG00000022113 Trim52 4921513B05Rik tripartite motif-containing 52 0.012821 0.401274 -4.535811 chr3-128 chr3 66914881 66915037 + 55.9 NA Intergenic Intergenic 154741 NM_013665 20429 Mm.39093 NM_013665 ENSMUSG00000027833 Shox2 6330543G17Rik|OG12|Og12x|Prx3|SHOT short stature homeobox 2 0.000000 0.426752 -0.747791 chr17-114 chr17 27077124 27077280 + 55.9 NA Intergenic Intergenic -145175 NM_146075 224640 Mm.29689 NM_146075 ENSMUSG00000044857 Lemd2 BC026588|Lem2|MGC37253|NET25 LEM domain containing 2 0.000000 0.541401 3.830923 chr2-163 chr2 92927549 92927705 + 55.9 NA Intergenic Intergenic -60795 NM_001025246 277414 Mm.41033 NM_001025246 ENSMUSG00000068735 Trp53i11 Tp53i11 transformation related protein 53 inducible protein 11 0.012821 0.611465 -6.929636 chr17-109 chr17 10319003 10319159 + 55.9 NA intron (NM_027032, intron 4 of 4) intron (NM_027032, intron 4 of 4) -156363 NM_001159517 19317 Mm.393248 NM_001159516 ENSMUSG00000062078 Qk 1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1 quaking 0.000000 0.439490 0.606282 chr5-223 chr5 131412926 131413082 + 55.9 NA intron (NM_145218, intron 2 of 10) intron (NM_145218, intron 2 of 10) 179221 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.038462 0.458599 -0.366421 chr8-128 chr8 42514650 42514806 + 55.9 NA intron (NM_001005863, intron 6 of 13) intron (NM_001005863, intron 6 of 13) -1556 NR_015457 78849 Mm.475362 NR_015457 B430010I23Rik - RIKEN cDNA B430010I23 gene 0.006410 0.331210 0.780477 chr18-86 chr18 14164057 14164213 + 55.9 NA Intergenic Intergenic -48233 NM_145492 225207 Mm.40325 NM_145492 ENSMUSG00000024420 Zfp521 B930086A16Rik|Evi3|Znf521 zinc finger protein 521 0.006410 0.439490 1.538596 chr12-131 chr12 10894521 10894677 + 55.9 NA Intergenic Intergenic 282117 NM_173417 238076 Mm.113278 NM_001168564 ENSMUSG00000043673 Kcns3 D12Ertd137e potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 0.012821 0.401274 -1.600216 chr1-234 chr1 107380041 107380197 + 55.9 NA intron (NM_013784, intron 27 of 30) intron (NM_013784, intron 27 of 30) 111104 NM_013784 27392 Mm.268911 NM_013784 ENSMUSG00000056536 Pign - phosphatidylinositol glycan anchor biosynthesis, class N 0.012821 0.343949 -2.455723 chr1-244 chr1 156807277 156807433 + 55.9 NA Intergenic Intergenic 54499 NM_010500 15939 Mm.12246 NM_010500 ENSMUSG00000056708 Ier5 - immediate early response 5 0.006410 0.382166 -3.278025 chr7-104 chr7 100037891 100038047 + 55.9 NA Intergenic Intergenic 4610 NM_026010 67164 Mm.46777 NM_026010 ENSMUSG00000030725 Lipt2 2610209A20Rik lipoyl(octanoyl) transferase 2 (putative) 0.019231 0.490446 -3.973887 chr16-82 chr16 92381300 92381456 + 55.9 NA Intergenic Intergenic -5627 NM_172469 209195 Mm.44747 NM_172469 ENSMUSG00000022949 Clic6 5730466J16Rik|AL022908|AW045520|CLIC1L|Neuronatin chloride intracellular channel 6 0.019231 0.496815 -6.376538 chr3-139 chr3 147677892 147678048 + 55.9 NA Intergenic (GAA)n|Simple_repeat|Simple_repeat 888218 NM_027594 70892 Mm.187793 XM_001005473 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|Ttll7s tubulin tyrosine ligase-like family, member 7 0.000000 0.331210 1.179223 chr11-161 chr11 77254047 77254203 + 55.9 NA intron (NM_177710, intron 12 of 14) intron (NM_177710, intron 12 of 14) -25982 NM_139129 216961 Mm.33477 NM_139128 ENSMUSG00000020836 Coro6 - coronin 6 0.006410 0.401274 2.051664 chr11-158 chr11 61521485 61521641 + 55.9 NA intron (NM_001033227, intron 9 of 15) intron (NM_001033227, intron 9 of 15) 15431 NM_001033227 109342 Mm.441070 NM_001033227 ENSMUSG00000042371 Slc5a10 C330021F16Rik|SGLT5 solute carrier family 5 (sodium/glucose cotransporter), member 10 0.000000 0.522293 3.336937 chr7-101 chr7 90187823 90187979 + 55.9 NA Intergenic Intergenic -35989 NM_031394 83671 Mm.26751 NM_001040085 ENSMUSG00000030616 Sytl2 AI266830|KIAA1597|Slp2|Slp2-a|Slp2-b|Slp2-c|Slp2-d|mKIAA1597 synaptotagmin-like 2 0.012821 0.515924 -0.137098 chr5-209 chr5 79787538 79787694 + 55.9 NA Intergenic Intergenic -1201093 NR_027806 231332 Mm.373616 NR_027806 Pea15b - phosphoprotein enriched in astrocytes 15B 0.012821 0.458599 -3.564354 chr5-212 chr5 83597720 83597876 + 55.9 NA Intergenic Intergenic 275828 NR_035415 100316803 NR_035415 Mir1187 mmu-mir-1187 microRNA mir-1187 0.000000 0.388535 -3.725265 chr9-182 chr9 96933116 96933272 + 55.9 NA Intergenic Intergenic -12801 NM_138756 192287 Mm.475433 NM_138756 ENSMUSG00000032449 Slc25a36 C330005L02Rik solute carrier family 25, member 36 0.006410 0.369427 -4.262468 chr3-123 chr3 27881266 27881422 + 55.9 NA intron (NM_173182, intron 1 of 25) intron (NM_173182, intron 1 of 25) 20168 NM_173182 72007 Mm.38832 NM_173182 ENSMUSG00000039286 Fndc3b 1600019O04Rik|AW550168|Fad104|KIAA4164|mKIAA4164 fibronectin type III domain containing 3B 0.012821 0.471338 1.094101 chr1-224 chr1 73948076 73948095 + 55.9 NA intron (NM_027884, intron 4 of 34) intron (NM_027884, intron 4 of 34) 109569 NM_027884 21961 Mm.309975 XM_619639 Tns1 1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns tensin 1 0.052632 0.750000 -11.981826 chr4-174 chr4 116840779 116840935 + 55.9 NA intron (NM_025739, intron 2 of 14) intron (NM_025739, intron 2 of 14) 90937 NM_026837 68777 Mm.331805 NM_026837 ENSMUSG00000048772 Tmem53 1110038M16Rik|1500001P22Rik|1700012A05Rik transmembrane protein 53 0.019231 0.541401 -3.845236 chr19-34 chr19 5822146 5822302 + 55.9 NA Intergenic Intergenic -19553 NR_002847 72289 Mm.298256 NR_002847 Malat1 2210401K01Rik|9430072K23Rik|AI647968 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 0.019231 0.585987 3.569620 chr2-154 chr2 59718534 59718690 + 55.9 NA intron (NM_001001182, intron 25 of 35) intron (NM_001001182, intron 25 of 35) -35167 NM_028118 72137 Mm.288734 NM_001159636 ENSMUSG00000026988 Wdsub1 1700048E19Rik|2610014F08Rik WD repeat, SAM and U-box domain containing 1 0.019231 0.382166 -8.409787 chr7-113 chr7 128374572 128374728 + 55.9 NA Intergenic Intergenic -27862 NM_178641 101490 Mm.464029 NM_178641 ENSMUSG00000042105 Inpp5f 5830435P03Rik|AI115354|AW561896|SAC2|cI-27|mKIAA0966 inositol polyphosphate-5-phosphatase F 0.012821 0.522293 1.863152 chr19-39 chr19 54093747 54093903 + 55.9 NA Intergenic Intergenic -4668 NM_007417 11551 Mm.235195 NM_007417 ENSMUSG00000033717 Adra2a AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR adrenergic receptor, alpha 2a 0.012821 0.426752 -3.683181 chr2-155 chr2 67232740 67232896 + 55.9 NA Intergenic L1_Mur2|LINE|L1 -14022 NM_001083919 241431 Mm.261043 NM_001024618 ENSMUSG00000027022 Xirp2 2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2 xin actin-binding repeat containing 2 0.012821 0.445860 -6.215800 chr8-131 chr8 74313063 74313219 + 55.9 NA TTS (NM_181418) TTS (NM_181418) -2200 NM_010150 13864 Mm.440170 NM_010150 ENSMUSG00000002393 Nr2f6 AV090102|COUP-TF3|EAR2|Erbal2 nuclear receptor subfamily 2, group F, member 6 0.006410 0.535032 2.222524 chr12-161 chr12 119314040 119314196 + 55.9 NA intron (NM_029961, intron 26 of 27) intron (NM_029961, intron 26 of 27) 23688 NM_177082 320145 Mm.51682 NM_177082 ENSMUSG00000048562 Sp8 D930049B17Rik|MGC105193|mBtd trans-acting transcription factor 8 0.000000 0.420382 4.130171 chr10-124 chr10 80389941 80390097 + 55.9 NA intron (NM_001038655, intron 2 of 3) intron (NM_001038655, intron 2 of 3) 14475 NM_001038655 14708 Mm.222496 NM_001038655 ENSMUSG00000048240 Gng7 AI840417 guanine nucleotide binding protein (G protein), gamma 7 0.019231 0.503185 -2.072309 chr1-243 chr1 154300657 154300813 + 55.9 NA intron (NM_016846, intron 10 of 17) intron (NM_016846, intron 10 of 17) 86594 NM_016846 19731 Mm.245270 NM_016846 ENSMUSG00000026482 Rgl1 KIAA0959|Rgl|mKIAA0959 ral guanine nucleotide dissociation stimulator,-like 1 0.012821 0.426752 -4.901684 chr16-80 chr16 37400447 37400603 + 55.9 NA Intergenic Intergenic 58483 NM_028812 74197 Mm.287795 NM_028812 ENSMUSG00000022828 Gtf2e1 2610024P03Rik|56kDa|AI303800|FE|TFIIE-A general transcription factor II E, polypeptide 1 (alpha subunit) 0.006410 0.445860 -1.406640 chr15-84 chr15 33807800 33807956 + 55.9 NA Intergenic Intergenic -175406 NM_001085421 239364 Mm.60794 XM_139378 ENSMUSG00000038984 Tspyl5 6330530B20|E130308C19Rik testis-specific protein, Y-encoded-like 5 0.006410 0.394904 0.749237 chr5-215 chr5 97667981 97668137 + 55.9 NA Intergenic Intergenic 29251 NM_010294 14626 Mm.61206 NM_010294 ENSMUSG00000050553 Gk2 GKTA|Gk-rs2 glycerol kinase 2 0.006410 0.414013 -0.584633 chr3-138 chr3 128800893 128801049 + 55.9 NA Intergenic (TCTCCC)n|Simple_repeat|Simple_repeat -390968 NM_011098 18741 Mm.246804 NM_001042502 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1a|Brx1b|Munc30|Otlx2|Pitx2a|Pitx2b|Pitx2c|Pitx2cbeta|Ptx2|Rieg|solurshin paired-like homeodomain transcription factor 2 0.006410 0.592357 -7.831738 chr5-195 chr5 15514500 15514656 + 55.9 NA intron (NM_001110844, intron 1 of 38) intron (NM_001110844, intron 1 of 38) 68064 NM_001110846 12293 Mm.159842 NM_001110843 ENSMUSG00000040118 Cacna2d1 Cacna2|Cchl2a|MGC141430 calcium channel, voltage-dependent, alpha2/delta subunit 1 0.012821 0.388535 -2.490685 chr9-179 chr9 84956709 84956865 + 55.9 NA Intergenic A-rich|Low_complexity|Low_complexity 167055 NM_001160378 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.000000 0.350318 -5.336137 chr16-81 chr16 87385104 87385260 + 55.9 NA promoter-TSS (NM_009840) promoter-TSS (NM_009840) -117 NM_009840 12469 Mm.328673 NM_009840 ENSMUSG00000025613 Cct8 AI132397|Cctq|Tcpq chaperonin containing Tcp1, subunit 8 (theta) 0.076923 0.573248 -0.939938 chr1-232 chr1 95833965 95834121 + 55.9 NA intron (NM_001039219, intron 5 of 7) intron (NM_001039219, intron 5 of 7) 13129 NM_001039219 619597 Mm.417228 NM_001039219 ENSMUSG00000073608 Gm6086 EG619597|Gm219 predicted gene 6086 0.012821 0.420382 -3.695790 chr12-149 chr12 81850334 81850490 + 55.9 NA Intergenic Intergenic -7117 NR_033786 67340 Mm.386790 NR_033786 1700052I22Rik - RIKEN cDNA 1700052I22 gene 0.000000 0.445860 -1.933603 chr16-86 chr16 95972053 95972209 + 55.9 NA Intergenic Intergenic 123682 NM_019537 56088 Mm.396248 NM_019537 ENSMUSG00000022913 Psmg1 AW552102|Dscr2 proteasome (prosome, macropain) assembly chaperone 1 0.000000 0.503185 -4.760773 chr2-171 chr2 156661805 156661961 + 55.9 NA intron (NM_180956, intron 1 of 16) intron (NM_180956, intron 1 of 16) 21669 NM_013865 29812 Mm.279256 NM_013865 ENSMUSG00000027634 Ndrg3 4833415O14Rik|AI747193|Ndr3 N-myc downstream regulated gene 3 0.006410 0.445860 -7.060655 chr2-165 chr2 144713993 144714149 + 55.9 NA Intergenic Intergenic 198965 NM_025490 66328 Mm.464235 NM_025490 ENSMUSG00000027431 1700010M22Rik - RIKEN cDNA 1700010M22 gene 0.000000 0.496815 -3.513735 chr5-213 chr5 93465863 93466019 + 55.9 NA intron (NM_181728, intron 3 of 9) intron (NM_181728, intron 3 of 9) -27464 NM_019494 56066 Mm.131723 XM_903598 ENSMUSG00000060183 Cxcl11 CXC11|H174|I-TAC|IP9|ITAC|SCYB9B|Scyb11|b-R1|betaR1 chemokine (C-X-C motif) ligand 11 0.012821 0.490446 7.839413 chr16-79 chr16 24131934 24132090 + 55.9 NA Intergenic Intergenic -176686 NM_178665 210126 Mm.450045 NM_001145952 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma 0.006410 0.471338 -2.541862 chr3-121 chr3 27113318 27113474 + 55.9 NA intron (NM_027583, intron 8 of 9) intron (NM_027583, intron 8 of 9) 231531 NM_007900 13605 Mm.261453 NM_001177625 ENSMUSG00000027699 Ect2 AI528536|KIAA4037|mKIAA4037 ect2 oncogene 0.006410 0.407643 -0.706207 chr4-163 chr4 7511383 7511539 + 55.9 NA Intergenic Intergenic -593591 NM_145711 252838 Mm.435828 NM_145711 ENSMUSG00000041272 Tox 1700007F02Rik|KIAA0808 thymocyte selection-associated high mobility group box 0.006410 0.350318 -1.967140 chr17-106 chr17 5100353 5100509 + 55.9 NA intron (NM_001085355, intron 4 of 19) intron (NM_001085355, intron 4 of 19) 148876 NM_001085355 239985 Mm.133401 XM_001474848 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235 AT rich interactive domain 1B (SWI-like) 0.012821 0.560510 -4.157831 chr18-95 chr18 80245379 80245535 + 55.9 NA intron (NM_053117, intron 2 of 2) intron (NM_053117, intron 2 of 2) 36504 NM_053117 93737 Mm.24678 NM_053117 ENSMUSG00000056214 Pard6g 2410049N21Rik|Par6a par-6 partitioning defective 6 homolog gamma (C. elegans) 0.006410 0.433121 4.998736 chrX-20 chrX 10269829 10269985 + 55.9 NA Intergenic B4|SINE|B4 -186308 NM_001111037 100042922 Mm.374311 XM_001476992 ENSMUSG00000078345 Gm14483 MGC107254|OTTMUSG00000016789 predicted gene 14483 0.006410 0.484076 -4.767680 chr1-221 chr1 69404120 69404276 + 55.9 NA Intergenic Intergenic 214970 NM_011770 22779 Mm.106343 NM_011770 ENSMUSG00000025997 Ikzf2 A730095J18Rik|Helios|Zfpn1a2|Znfn1a2 IKAROS family zinc finger 2 0.006410 0.477707 -4.523523 chr5-210 chr5 80422078 80422234 + 55.9 NA Intergenic Intergenic -1673997 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.006410 0.426752 0.924346 chr16-73 chr16 8810670 8810826 + 55.9 NA Intergenic Intergenic 64779 NM_001081400 69053 Mm.479940 XM_001480138 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|R74903 RIKEN cDNA 1810013L24 gene 0.012821 0.471338 -4.410086 chr13-91 chr13 53191267 53191423 + 55.9 NA intron (NM_013846, intron 1 of 8) intron (NM_013846, intron 1 of 8) 102298 NM_013846 26564 Mm.342774 NM_013846 ENSMUSG00000021464 Ror2 Ntrkr2|mRor2 receptor tyrosine kinase-like orphan receptor 2 0.025641 0.445860 -4.106904 chr14-48 chr14 29751753 29751909 + 55.9 NA exon (NM_008407, exon 2 of 21) exon (NM_008407, exon 2 of 21) 765 NM_008407 16426 Mm.4517 NM_008407 ENSMUSG00000006522 Itih3 AW108094|Intin3|Itih-3 inter-alpha trypsin inhibitor, heavy chain 3 0.012821 0.547771 0.538594 chr13-96 chr13 99157438 99157594 + 55.9 NA intron (NM_012026, intron 4 of 35) intron (NM_012026, intron 4 of 35) 148806 NM_012026 110596 Mm.252718 NM_012026 ENSMUSG00000021662 Rgnef 9230110L08Rik|AI323540|D13Bwg1089e|RIP2|RhoGEF|Rhoip2|p190RhoGEF Rho-guanine nucleotide exchange factor 0.000000 0.369427 0.255753 chr11-168 chr11 112651870 112652026 + 55.9 NA Intergenic Intergenic 53649 NM_011448 20682 Mm.481669 NM_011448 ENSMUSG00000000567 Sox9 2010306G03Rik|AV220920|KIAA4243|mKIAA4243 SRY-box containing gene 9 0.019231 0.522293 -8.344187 chr10-122 chr10 69045050 69045206 + 55.9 NA intron (NM_170730, intron 1 of 17) intron (NM_170730, intron 1 of 17) 116064 NM_146005 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G|MGC14049 ankyrin 3, epithelial 0.032051 0.490446 -4.130243 chr19-37 chr19 10827751 10827907 + 55.9 NA intron (NR_027805, intron 1 of 3) intron (NR_027805, intron 1 of 3) 19838 NR_027805 403202 Mm.34482 NR_027805 A430093F15Rik Gm674 RIKEN cDNA A430093F15 gene 0.012821 0.477707 -2.143846 chr14-51 chr14 94344056 94344212 + 55.9 NA Intergenic B3|SINE|B2 -420265 NM_025733 66732 Mm.75060 NM_025733 ENSMUSG00000034689 4921530L21Rik - RIKEN cDNA 4921530L21 gene 0.006410 0.356688 -4.858439 chr9-171 chr9 51948457 51948613 + 55.9 NA Intergenic Intergenic -28059 NM_001162921 244871 Mm.390172 XM_146893 ENSMUSG00000035164 Zc3h12c A230108E06|C230027N18Rik|KIAA1726|mKIAA1726 zinc finger CCCH type containing 12C 0.006410 0.433121 -3.768941 chr3-120 chr3 24323438 24323594 + 55.9 NA Intergenic Intergenic 1881503 NR_004439 19784 NR_004439 Rprl2 RPRH2|RPRH3|Rmrp3 ribonuclease P RNA-like 2 0.006410 0.369427 -7.235109 chr6-127 chr6 112997140 112997296 + 55.9 NA Intergenic Intergenic -14885 NM_008188 14911 Mm.781 NM_008188 ENSMUSG00000030264 Thumpd3 AW556087|Gt(ROSA)26asSor|Gtrosa26as THUMP domain containing 3 0.006410 0.445860 -1.698387 chr7-99 chr7 84243310 84243466 + 55.9 NA intron (NM_007488, intron 1 of 18) intron (NM_007488, intron 1 of 18) 42756 NM_007488 11864 Mm.38594 NM_007488 ENSMUSG00000015709 Arnt2 Hif-2b|bHLHe1|mKIAA0307 aryl hydrocarbon receptor nuclear translocator 2 0.032051 0.477707 -2.556221 chr8-141 chr8 127381070 127381226 + 55.9 NA Intergenic Intergenic -25708 NM_029746 76332 Mm.240108 NM_029746 ENSMUSG00000031979 Cog2 1190002B08Rik|2700012E02Rik|C86089|Ldlc component of oligomeric golgi complex 2 0.025641 0.490446 -1.328220 chr9-166 chr9 30329247 30329403 + 55.9 NA Intergenic Intergenic 152430 NM_028874 102607 Mm.35084 NM_028874 ENSMUSG00000031993 Snx19 3526401K03Rik|AI195321|AI848208|mKIAA0254 sorting nexin 19 0.000000 0.452229 -2.617816 chr8-139 chr8 125694848 125695004 + 55.9 NA intron (NM_144932, intron 7 of 9) intron (NM_144932, intron 7 of 9) -32741 NM_001100618 100043225 Mm.390074 XM_001001934 ENSMUSG00000074046 Gm16378 EG434356 predicted gene 16378 0.000000 0.420382 -3.554434 chr12-133 chr12 25487173 25487329 + 55.9 NA intron (NM_001083341, intron 3 of 11) intron (NM_001083341, intron 3 of 11) 66574 NM_001083341 67216 Mm.167671 NM_001083341 ENSMUSG00000020646 Mboat2 2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2 membrane bound O-acyltransferase domain containing 2 0.019231 0.547771 1.340181 chr7-111 chr7 119732827 119732983 + 55.9 NA Intergenic Intergenic 45465 NM_029610 73919 Mm.46381 NM_029610 ENSMUSG00000030922 Lyrm1 1110065L10Rik|2310004B22Rik|4930404J24Rik LYR motif containing 1 0.006410 0.452229 -3.815718 chr10-136 chr10 127671393 127671549 + 55.9 NA 5' UTR (NM_133997, exon 1 of 2) 5' UTR (NM_133997, exon 1 of 2) 526 NM_133997 103161 Mm.26513 NM_133997 ENSMUSG00000047631 Apof AI255964 apolipoprotein F 0.012821 0.490446 4.414066 chr11-160 chr11 68783826 68783982 + 55.9 NA promoter-TSS (NM_028048) promoter-TSS (NM_028048) -421 NM_028048 71998 Mm.371612 NM_028048 ENSMUSG00000018740 Slc25a35 1810012H11Rik solute carrier family 25, member 35 0.076923 0.649682 -3.105262 chr9-172 chr9 61164143 61164299 + 55.9 NA Intergenic Intergenic -6150 NM_001083928 21887 Mm.469199 NM_001083927 ENSMUSG00000032280 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 transducin-like enhancer of split 3, homolog of Drosophila E(spl) 0.038462 0.445860 -5.639259 chr12-150 chr12 82243974 82244130 + 55.9 NA intron (NM_001167920, intron 1 of 6) intron (NM_001167920, intron 1 of 6) 7976 NM_001167920 110893 Mm.443748 NM_001167920 ENSMUSG00000053302 Slc8a3 AW742262|MGC90626|Ncx3 solute carrier family 8 (sodium/calcium exchanger), member 3 0.006410 0.484076 -0.431369 chr15-81 chr15 12384246 12384402 + 55.9 NA intron (NM_001081064, intron 4 of 23) intron (NM_001081064, intron 4 of 23) 118104 NM_025673 66629 Mm.250936 NM_025673 ENSMUSG00000022200 Golph3 4733401N08Rik|5730410D03Rik|AW413496 golgi phosphoprotein 3 0.019231 0.509554 1.461646 chr2-157 chr2 72217503 72217659 + 55.9 NA intron (NM_023057, intron 15 of 19) intron (NM_023057, intron 15 of 19) -59476 NM_025866 66953 Mm.270676 NM_025866 ENSMUSG00000055612 Cdca7 2310021G01Rik|AU044109|JPO1 cell division cycle associated 7 0.019231 0.388535 1.123787 chr1-229 chr1 78624233 78624389 + 55.9 NA Intergenic Intergenic -71661 NM_021342 57814 Mm.24386 NM_021342 ENSMUSG00000047330 Kcne4 AW487937|MiRP3 potassium voltage-gated channel, Isk-related subfamily, gene 4 0.019231 0.426752 -3.257824 chr3-126 chr3 32196553 32196709 + 55.9 NA intron (NM_028231, intron 2 of 5) intron (NM_028231, intron 2 of 5) 103051 NM_028231 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik|MGC57945 potassium large conductance calcium-activated channel, subfamily M, beta member 2 0.006410 0.471338 2.322369 chr1-238 chr1 129097941 129098097 + 55.9 NA intron (NM_145128, intron 2 of 17) intron (NM_145128, intron 2 of 17) 65488 NM_145128 107895 Mm.472488 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 0.006410 0.452229 0.593672 chr12-151 chr12 85059805 85059961 + 55.9 NA intron (NM_001163502, intron 3 of 12) intron (NM_001163502, intron 3 of 12) -21646 NM_027438 70481 Mm.444348 NM_027438 ENSMUSG00000054383 Pnma1 5730402C15Rik|MGC144789|MGC144790 paraneoplastic antigen MA1 0.019231 0.464968 -5.151606 chr12-162 chr12 119895334 119895490 + 55.9 NA intron (NM_001163136, intron 3 of 3) intron (NM_001163136, intron 3 of 3) 7901 NM_001163136 238455 Mm.31376 XM_138397 ENSMUSG00000041886 Macc1 4732474O15Rik|Gm267 metastasis associated in colon cancer 1 0.012821 0.439490 -6.153494 chr8-133 chr8 97253142 97253298 + 55.9 NA intron (NM_019415, intron 24 of 24) intron (NM_019415, intron 24 of 24) -22408 NM_022331 64209 Mm.29151 NM_022331 ENSMUSG00000031770 Herpud1 Herp|Mifl|SUP homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 0.006410 0.509554 -2.710952 chr7-117 chr7 144492668 144492824 + 55.9 NA intron (NM_178642, intron 1 of 24) intron (NM_178642, intron 1 of 24) 55122 NM_178642 101772 Mm.26700 NM_178642 ENSMUSG00000031075 Ano1 AU040576|AW559012|Tmem16a anoctamin 1, calcium activated chloride channel 0.000000 0.541401 0.454966 chr7-109 chr7 112179267 112179423 + 55.9 NA Intergenic URR1B|DNA|MER1_type -39541 NM_020606 57342 Mm.143763 NM_020606 ENSMUSG00000030770 Parva 2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin parvin, alpha 0.019231 0.407643 -5.405082 chr8-125 chr8 13625026 13625182 + 55.9 NA intron (NM_009025, intron 2 of 23) intron (NM_009025, intron 2 of 23) 52460 NM_009025 19414 Mm.18517 NM_009025 ENSMUSG00000031453 Rasa3 AI326412|C86362|E130011G04|GAPIII RAS p21 protein activator 3 0.025641 0.515924 -7.363707 chr10-121 chr10 59339014 59339170 + 55.9 NA Intergenic THER1_MD|SINE|MIR 8035 NM_029083 74747 Mm.21697 NM_029083 ENSMUSG00000020108 Ddit4 5830413E08Rik|AA415483|REDD1|Rtp801|dig2 DNA-damage-inducible transcript 4 0.025641 0.471338 -4.234159 chr14-46 chr14 24705612 24705768 + 55.9 NA intron (NM_013469, intron 3 of 14) intron (NM_013469, intron 3 of 14) 30352 NM_013469 11744 Mm.294083 NM_013469 ENSMUSG00000021866 Anxa11 A830099O17Rik|Anx11 annexin A11 0.006410 0.515924 -3.718364 chr15-83 chr15 31372248 31372404 + 55.9 NA Intergenic Intergenic 25952 NM_145852 252967 Mm.436668 NM_145852 ENSMUSG00000022236 Ropn1l ASP|AV047578|Akapasp ropporin 1-like 0.006410 0.439490 -2.873025 chr1-226 chr1 75147932 75148088 + 55.9 NA promoter-TSS (NM_008985) promoter-TSS (NM_008985) -654 NM_008985 19275 Mm.2902 NM_008985 ENSMUSG00000026204 Ptprn IA-2|KIAA4064|mIA-A|mKIAA4064 protein tyrosine phosphatase, receptor type, N 0.025641 0.375796 0.947332 chr17-110 chr17 15061634 15061790 + 55.9 NA Intergenic MIRm|SINE|MIR -2288 NR_033511 100038481 Mm.387544 NR_033511 Gm10510 ENSMUSG00000073453 predicted gene 10510 0.012821 0.515924 -1.564041 chr12-137 chr12 39481566 39481722 + 55.9 NA Intergenic Intergenic 187511 NM_001163154 14009 Mm.4866 NM_001163154 ENSMUSG00000004151 Etv1 ER81|Etsrp81 ets variant gene 1 0.006410 0.394904 1.090641 chr11-166 chr11 107530580 107530736 + 55.9 NA intron (NM_007582, intron 1 of 3) intron (NM_007582, intron 1 of 3) 1908 NM_007582 12299 Mm.57093 NM_007582 ENSMUSG00000020722 Cacng1 MGC117703 calcium channel, voltage-dependent, gamma subunit 1 0.032051 0.535032 -3.755269 chr13-98 chr13 102169598 102169754 + 55.9 NA Intergenic Intergenic -235992 NM_022885 69048 Mm.402215 NM_022885 ENSMUSG00000021629 Slc30a5 1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1 solute carrier family 30 (zinc transporter), member 5 0.000000 0.350318 3.364525 chr5-231 chr5 144684255 144684411 + 55.9 NA Intergenic Intergenic -72694 NM_025833 66898 Mm.18814 NM_025833 ENSMUSG00000038859 Baiap2l1 1300006M19Rik|AI585895|IRTKS BAI1-associated protein 2-like 1 0.000000 0.292994 -1.771400 chr9-178 chr9 77741139 77741295 + 55.9 NA intron (NM_134255, intron 1 of 7) intron (NM_134255, intron 1 of 7) 38169 NM_134255 68801 Mm.475262 NM_134255 ENSMUSG00000032349 Elovl5 1110059L23Rik|AI747313|AU043003|HELO1 ELOVL family member 5, elongation of long chain fatty acids (yeast) 0.000000 0.496815 0.907096 chr1-218 chr1 62290430 62290586 + 55.9 NA intron (NM_001081050, intron 18 of 22) intron (NM_001081050, intron 18 of 22) -347084 NM_001077406 18187 Mm.266341 NM_001077403 ENSMUSG00000025969 Nrp2 1110048P06Rik|Np-2|Np2|Npn-2|Npn2 neuropilin 2 0.006410 0.420382 -3.288755 chr2-151 chr2 38650052 38650208 + 55.9 NA intron (NM_010264, intron 3 of 10) intron (NM_010264, intron 3 of 10) -24613 NR_029568 387176 NR_029568 Mir181a-2 Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a microRNA 181a-2 0.012821 0.452229 1.303282 chr3-124 chr3 28384144 28384300 + 55.9 NA Intergenic RMER6A|LTR|ERVK -70064 NM_001163007 665113 Mm.126193 XM_001473602 ENSMUSG00000027692 Tnik 1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik|KIAA0551|MGC189819|MGC189859 TRAF2 and NCK interacting kinase 0.019231 0.490446 -4.941711 chr12-152 chr12 88260092 88260248 + 55.9 NA intron (NM_011479, intron 1 of 11) intron (NM_011479, intron 1 of 11) 17163 NM_011479 20773 Mm.565 NM_011479 ENSMUSG00000021036 Sptlc2 AI173915|LCB2|mKIAA0526 serine palmitoyltransferase, long chain base subunit 2 0.000000 0.414013 -0.315958 chr2-166 chr2 147666376 147666532 + 55.9 NA Intergenic Intergenic 71956 NM_010446 15376 Mm.938 NM_010446 ENSMUSG00000037025 Foxa2 HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b forkhead box A2 0.000000 0.547771 -2.807524 chr4-167 chr4 45810828 45810984 + 55.9 NA Intergenic Intergenic -9215 NM_028270 72535 Mm.331583 NM_028270 ENSMUSG00000035561 Aldh1b1 2700007F14Rik|MGC101971 aldehyde dehydrogenase 1 family, member B1 0.012821 0.496815 -1.511465 chr4-160 chr4 3397818 3397974 + 55.9 NA Intergenic T-rich|Low_complexity|Low_complexity 104019 NM_028097 72098 Mm.477795 NM_028097 ENSMUSG00000028232 Tmem68 2010300G19Rik|AA408325|AW123402 transmembrane protein 68 0.000000 0.388535 -4.500543 chr8-146 chr8 130633908 130634064 + 55.9 NA Intergenic Intergenic 448245 NM_001013580 93742 Mm.299254 NM_001013580 ENSMUSG00000025812 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) 0.000000 0.560510 -4.563593 chr9-177 chr9 70786410 70786566 + 55.9 NA Intergenic Intergenic -52463 NM_008280 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl lipase, hepatic 0.006410 0.535032 -5.432670 chr17-120 chr17 48834591 48834747 + 55.9 NA Intergenic Intergenic -56142 NR_033486 100415784 Mm.400421 NR_033486 LOC100415784 - hypothetical LOC100415784 0.000000 0.414013 1.968998 chr5-197 chr5 23647024 23647180 + 55.9 NA intron (NM_001161800, intron 5 of 9) intron (NM_001161800, intron 5 of 9) -27925 NM_153092 231042 Mm.45513 NM_153092 ENSMUSG00000048439 Nupl2 AV116043|CG1|NLP-1|Nlp1 nucleoporin like 2 0.006410 0.420382 0.083568 chr7-92 chr7 24164610 24164766 + 55.9 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -6571 NM_011113 18793 Mm.1359 NM_011113 ENSMUSG00000046223 Plaur Cd87|u-PAR|uPAR plasminogen activator, urokinase receptor 0.012821 0.484076 -4.143516 chr4-181 chr4 138001496 138001652 + 55.9 NA intron (NM_008868, intron 2 of 5) intron (NM_008868, intron 2 of 5) 4174 NM_008868 18781 Mm.5189 NM_008868 ENSMUSG00000028750 Pla2g2c - phospholipase A2, group IIC 0.006410 0.490446 -2.615838 chr3-134 chr3 100665024 100665180 + 55.9 NA Intergenic Intergenic -46849 NM_001142952 74645 Mm.226900 NM_001142952 Fam46c 4930431B09Rik|AI449797 family with sequence similarity 46, member C 0.012821 0.471338 -1.259827 chr1-246 chr1 159794385 159794541 + 55.9 NA Intergenic Intergenic 398474 NM_207583 240843 Mm.329579 NM_207583 ENSMUSG00000004031 Fam5b 6430517E21Rik|BB361039|mKIAA1747 family with sequence similarity 5, member B 0.012821 0.458599 -6.036602 chr7-93 chr7 25149239 25149395 + 55.9 NA intron (NR_015569, intron 4 of 6) intron (NR_015569, intron 4 of 6) -27671 NM_153576 232983 Mm.10545 NM_153576 ENSMUSG00000060188 Cxcl17 MGC37641|VCC-1|Vcc1 chemokine (C-X-C motif) ligand 17 0.012821 0.535032 -5.147946 chr16-84 chr16 92978136 92978292 + 55.9 NA Intergenic Intergenic -263608 NM_001111022 12394 Mm.470227 NM_001111021 ENSMUSG00000022952 Runx1 AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b runt related transcription factor 1 0.000000 0.471338 -3.305613 chr12-143 chr12 57474474 57474630 + 55.9 NA Intergenic Lx9|LINE|L1 -19632 NM_009385 21869 Mm.89972 NM_001146198 ENSMUSG00000001496 Nkx2-1 AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1 NK2 homeobox 1 0.000000 0.484076 -2.763326 chrX-21 chrX 100196627 100196783 + 55.9 NA Intergenic B1_Mur4|SINE|Alu -12702 NM_011276 19820 Mm.480683 NM_011276 ENSMUSG00000056537 Rlim AL022832|AW743871|Ha1r|Rnf12 ring finger protein, LIM domain interacting 0.012821 0.445860 2.408456 chr4-177 chr4 128740785 128740941 + 55.9 NA intron (NM_001033189, intron 1 of 6) intron (NM_001033189, intron 1 of 6) 9884 NM_001033189 97130 Mm.331907 NM_001033189 ENSMUSG00000050390 C77080 Kiaa1522|mKIAA1522 expressed sequence C77080 0.006410 0.477707 -0.701022 chr18-96 chr18 80665265 80665421 + 55.9 NA Intergenic Intergenic -33617 NM_026295 67655 Mm.312893 NM_026295 ENSMUSG00000033323 Ctdp1 4930563P03Rik|AW553592 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 0.032051 0.522293 -0.288369 chr5-205 chr5 54250566 54250722 + 55.9 NA Intergenic Intergenic -36126 NM_001081103 116873 Mm.265985 NM_001081103 ENSMUSG00000039156 Stim2 - stromal interaction molecule 2 0.012821 0.490446 0.951934 chr13-99 chr13 102193623 102193779 + 55.9 NA Intergenic Intergenic -260017 NM_022885 69048 Mm.402215 NM_022885 ENSMUSG00000021629 Slc30a5 1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1 solute carrier family 30 (zinc transporter), member 5 0.000000 0.560510 -1.565160 chr7-115 chr7 139988843 139988999 + 55.9 NA promoter-TSS (NM_199301) promoter-TSS (NM_199301) 38 NM_199301 212508 Mm.296088 NM_199301 ENSMUSG00000039018 Mtg1 Gm169|Gtpbp7|MGC28365 mitochondrial GTPase 1 homolog (S. cerevisiae) 0.102564 0.681529 -2.975725 chr4-170 chr4 96553562 96553718 + 55.9 NA Intergenic Intergenic -276462 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 OTTMUSG00000008003 predicted gene 12695 0.006410 0.414013 -0.716426 chr5-250 chr5 65647114 65647270 + 50.8 NA intron (NM_031180, intron 1 of 4) intron (NM_031180, intron 1 of 4) 19647 NM_031180 83379 Mm.45274 NM_031180 ENSMUSG00000029195 Klb AV071179|betaKlotho klotho beta 0.044872 0.528662 -2.072309 chr3-146 chr3 53738247 53738403 + 50.8 NA intron (NM_172862, intron 1 of 23) intron (NM_172862, intron 1 of 23) 6959 NM_172862 242022 Mm.38378 NM_172862 ENSMUSG00000037016 Frem2 6030440P17Rik|8430406N05Rik|Gm409|my|nv1 Fras1 related extracellular matrix protein 2 0.012821 0.484076 -0.588098 chr13-118 chr13 64214508 64214664 + 50.8 NA exon (NM_172587, exon 13 of 14) exon (NM_172587, exon 13 of 14) 43170 NM_001122989 218294 Mm.25335 NM_001122989 ENSMUSG00000033102 Cdc14b 2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1 CDC14 cell division cycle 14 homolog B (S. cerevisiae) 0.000000 0.515924 -2.774579 chr9-195 chr9 47173869 47174025 + 50.8 NA Intergenic Intergenic -107399 NM_207675 54725 Mm.234832 NM_001025600 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 cell adhesion molecule 1 0.006410 0.515924 0.830609 chr3-156 chr3 121370830 121370986 + 50.8 NA Intergenic Intergenic -47655 NM_028044 71994 Mm.275555 NM_028044 ENSMUSG00000053931 Cnn3 1600014M03Rik|C85854 calponin 3, acidic 0.000000 0.477707 0.538595 chr11-214 chr11 93095063 93095219 + 50.8 NA intron (NM_028296, intron 2 of 8) intron (NM_028296, intron 2 of 8) 179762 NM_028296 72605 Mm.342160 NM_028296 ENSMUSG00000056158 Car10 2700029L05Rik|BB085816|Ca10 carbonic anhydrase 10 0.006410 0.420382 -6.706950 chr10-161 chr10 108341327 108341483 + 50.8 NA intron (NM_009306, intron 1 of 10) intron (NM_009306, intron 1 of 10) 73324 NM_009306 20979 Mm.289702 NM_009306 ENSMUSG00000035864 Syt1 AW124717|G630098F17Rik synaptotagmin I 0.012821 0.471338 -3.710769 chr15-98 chr15 31373316 31373472 + 50.8 NA Intergenic Intergenic 24884 NM_145852 252967 Mm.436668 NM_145852 ENSMUSG00000022236 Ropn1l ASP|AV047578|Akapasp ropporin 1-like 0.025641 0.535032 -5.484983 chr13-111 chr13 51934822 51934978 + 50.8 NA Intergenic B2_Mm2|SINE|B2 75730 NM_011817 23882 Mm.281298 NM_011817 ENSMUSG00000021453 Gadd45g AI327420|C86281|CR6|DDIT2|OIG37 growth arrest and DNA-damage-inducible 45 gamma 0.006410 0.407643 4.360358 chr17-142 chr17 33282259 33282415 + 50.8 NA intron (NM_029804, intron 2 of 15) intron (NM_029804, intron 2 of 15) 9808 NM_001109913 76936 Mm.311439 NM_001109913 ENSMUSG00000059208 Hnrnpm 2610023M21Rik|AA409009|Hnrpm|KIAA4193|mKIAA4193 heterogeneous nuclear ribonucleoprotein M 0.000000 0.433121 -6.307594 chr10-140 chr10 17534577 17534733 + 50.8 NA 3' UTR (NM_138628, exon 10 of 10) 3' UTR (NM_138628, exon 10 of 10) 49021 NM_138628 378431 Mm.283493 NM_138628 ENSMUSG00000039891 Txlnb 2310001N14Rik|Mdp77 taxilin beta 0.000000 0.407643 -1.563208 chr2-219 chr2 173663481 173663637 + 50.8 NA Intergenic Intergenic -56430 NM_172675 228960 Mm.277977 NM_001102423 ENSMUSG00000027522 Stx16 4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16 syntaxin 16 0.012821 0.496815 -3.335665 chr1-302 chr1 181217260 181217416 + 50.8 NA intron (NM_027188, intron 5 of 11) intron (NM_027188, intron 5 of 11) 137340 NM_027188 69726 Mm.222338 NM_027188 ENSMUSG00000055067 Smyd3 2410008A19Rik|Zmynd1 SET and MYND domain containing 3 0.025641 0.503185 4.736528 chr7-132 chr7 111975749 111975905 + 50.8 NA Intergenic Intergenic -25589 NM_015814 50781 Mm.55143 NM_015814 ENSMUSG00000030772 Dkk3 AW061014|C87148 dickkopf homolog 3 (Xenopus laevis) 0.006410 0.484076 -2.001141 chr12-178 chr12 58396509 58396665 + 50.8 NA Intergenic Intergenic 67546 NM_008259 15375 Mm.4578 NM_008259 ENSMUSG00000035451 Foxa1 Hnf-3a|Hnf3a|Tcf-3a|Tcf3a forkhead box A1 0.012821 0.433121 -4.796524 chr12-183 chr12 91268061 91268217 + 50.8 NA Intergenic Intergenic -124311 NM_010050 13371 Mm.408815 NM_010050 ENSMUSG00000007682 Dio2 5DII|AI324267|DIOII deiodinase, iodothyronine, type II 0.012821 0.382166 -1.534616 chr10-159 chr10 93997854 93998010 + 50.8 NA intron (NM_172051, intron 1 of 3) intron (NM_172051, intron 1 of 3) -7123 NM_001168684 319880 Mm.23047 NM_001168684 ENSMUSG00000020023 Tmcc3 AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 transmembrane and coiled coil domains 3 0.044872 0.528662 -2.605294 chr1-291 chr1 129578257 129578413 + 50.8 NA intron (NM_001033041, intron 5 of 9) intron (NM_001033041, intron 5 of 9) 21377 NM_001033041 266645 Mm.25735 NM_001033041 ENSMUSG00000026348 Acmsd - amino carboxymuconate semialdehyde decarboxylase 0.019231 0.484076 0.834185 chr13-121 chr13 67759969 67760125 + 50.8 NA intron (NM_001001152, intron 1 of 3) intron (NM_001001152, intron 1 of 3) 8118 NM_001001152 238690 Mm.306358 NM_001001152 ENSMUSG00000055480 Zfp458 BC062958|Rslcan-7|mszf59-2 zinc finger protein 458 0.006410 0.464968 -6.821183 chr14-60 chr14 24343375 24343531 + 50.8 NA intron (NM_183208, intron 2 of 23) intron (NM_183208, intron 2 of 23) 50978 NM_183208 328365 Mm.227484 XM_001472051 ENSMUSG00000007817 Zmiz1 BC065120|E330020C23|I920194n01|Rai17|Zimp10 zinc finger, MIZ-type containing 1 0.006410 0.490446 -1.942241 chr18-107 chr18 44534633 44534789 + 50.8 NA intron (NM_027490, intron 7 of 10) intron (NM_027490, intron 7 of 10) 28881 NM_027490 70640 Mm.87629 XM_140308 ENSMUSG00000024472 Dcp2 2410015D23Rik|5730537H01Rik|AL118268 DCP2 decapping enzyme homolog (S. cerevisiae) 0.025641 0.490446 0.840639 chr1-303 chr1 185796359 185796515 + 50.8 NA Intergenic B4A|SINE|B4 60721 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5 dual specificity phosphatase 10 0.019231 0.477707 -3.178923 chr7-121 chr7 24168563 24168719 + 50.8 NA Intergenic Intergenic -2618 NM_011113 18793 Mm.1359 NM_011113 ENSMUSG00000046223 Plaur Cd87|u-PAR|uPAR plasminogen activator, urokinase receptor 0.006410 0.515924 0.447030 chr5-251 chr5 67860470 67860626 + 50.8 NA Intergenic Intergenic -26469 NM_001033415 330096 Mm.474484 NM_001033415 ENSMUSG00000050010 Shisa3 D830007B15Rik|mShisa3 shisa homolog 3 (Xenopus laevis) 0.025641 0.509554 7.839434 chr4-202 chr4 104449338 104449494 + 50.8 NA intron (NM_001162980, intron 4 of 19) intron (NM_001162980, intron 4 of 19) 38029 NM_001162980 242594 Mm.65181 XM_161350 ENSMUSG00000078612 1700024P16Rik C1orf168|Gm620|MGC169347 RIKEN cDNA 1700024P16 gene 0.006410 0.477707 -3.211575 chr1-296 chr1 141101887 141102043 + 50.8 NA intron (NM_133239, intron 5 of 11) intron (NM_133239, intron 5 of 11) 91522 NM_133239 170788 Mm.95700 NM_133239 ENSMUSG00000063681 Crb1 7530426H14Rik|A930008G09Rik crumbs homolog 1 (Drosophila) 0.000000 0.439490 -5.903170 chr4-193 chr4 70005882 70006038 + 50.8 NA intron (NM_172694, intron 1 of 5) intron (NM_172694, intron 1 of 5) 15329 NM_172694 230316 Mm.251188 NM_172694 ENSMUSG00000039270 Megf9 4933405H16Rik|9630025C07|Egfl5|mKIAA0818 multiple EGF-like-domains 9 0.006410 0.394904 -5.702188 chr9-214 chr9 96829065 96829221 + 50.8 NA Intergenic Intergenic -1436 NM_145134 211949 Mm.479991 NM_145134 ENSMUSG00000046997 Spsb4 D030068E18Rik|SSB-4|Ssb4 splA/ryanodine receptor domain and SOCS box containing 4 0.006410 0.458599 -1.880745 chr17-141 chr17 31648425 31648581 + 50.8 NA Intergenic Intergenic -64001 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Msk|Sik|Snf1lk salt inducible kinase 1 0.025641 0.579618 -3.647378 chr12-186 chr12 102952176 102952332 + 50.8 NA Intergenic Intergenic -3764 NM_007693 12652 Mm.4137 NM_007693 ENSMUSG00000021194 Chga - chromogranin A 0.006410 0.477707 -2.204295 chr4-205 chr4 111162125 111162281 + 50.8 NA Intergenic Intergenic -55738 NM_026470 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash spermatogenesis associated 6 0.006410 0.407643 -4.157669 chrX-22 chrX 35474467 35474623 + 50.8 NA Intergenic Intergenic -116347 NM_001177380 78631 Mm.243738 XM_976675 ENSMUSG00000079619 Cypt15 1700085A12Rik cysteine-rich perinuclear theca 15 0.012821 0.464968 0.806597 chr1-272 chr1 72116439 72116595 + 50.8 NA intron (NM_001005423, intron 2 of 4) intron (NM_001005423, intron 2 of 4) 28998 NM_001005423 381269 Mm.422636 NM_001005423 ENSMUSG00000039395 Mreg Gm974|MGC92980|Wdt2|dsu melanoregulin 0.025641 0.547771 -8.169660 chr6-153 chr6 125309884 125310040 + 50.8 NA 3' UTR (NM_011324, exon 12 of 12) 3' UTR (NM_011324, exon 12 of 12) -5379 NM_011609 21937 Mm.474976 NM_011609 ENSMUSG00000030341 Tnfrsf1a CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R tumor necrosis factor receptor superfamily, member 1a 0.038462 0.535032 -2.283007 chr14-61 chr14 29759474 29759630 + 50.8 NA intron (NM_008406, intron 19 of 21) intron (NM_008406, intron 19 of 21) -6956 NM_008407 16426 Mm.4517 NM_008407 ENSMUSG00000006522 Itih3 AW108094|Intin3|Itih-3 inter-alpha trypsin inhibitor, heavy chain 3 0.000000 0.484076 -4.606389 chr3-165 chr3 155929418 155929574 + 50.8 NA Intergenic Intergenic -567590 NM_001039094 320840 Mm.317293 NM_001039094 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra|mKIAA3001 neuronal growth regulator 1 0.006410 0.388535 0.568632 chr2-201 chr2 118239048 118239204 + 50.8 NA intron (NM_138313, intron 2 of 4) intron (NM_138313, intron 2 of 4) 1993 NM_138313 171543 Mm.210125 NM_138313 ENSMUSG00000040093 Bmf AW260063|AW411872 BCL2 modifying factor 0.012821 0.592357 -2.930144 chr2-221 chr2 178838831 178838987 + 50.8 NA Intergenic Intergenic 478895 NM_198656 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010|MGC56946 cadherin-like 26 0.019231 0.420382 -8.066175 chr15-103 chr15 37262728 37262884 + 50.8 NA intron (NM_026496, intron 8 of 15) intron (NM_026496, intron 8 of 15) 85182 NM_026496 252973 Mm.391911 NM_026496 ENSMUSG00000022286 Grhl2 0610015A08Rik|BOM|Tcfcp2l3 grainyhead-like 2 (Drosophila) 0.012821 0.426752 -1.377122 chr11-220 chr11 109390258 109390414 + 50.8 NA TTS (NM_001166177) TTS (NM_001166177) 30536 NM_001166177 74008 Mm.211850 NM_001166177 ENSMUSG00000020604 Arsg 6330406P08Rik|AI846872|MGC90567 arylsulfatase G 0.006410 0.433121 -1.974366 chr10-158 chr10 93910727 93910883 + 50.8 NA Intergenic Intergenic -33850 NM_172051 319880 Mm.23047 NM_001168684 ENSMUSG00000020023 Tmcc3 AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 transmembrane and coiled coil domains 3 0.006410 0.471338 -0.921178 chr9-220 chr9 121754360 121754516 + 50.8 NA intron (NM_021609, intron 1 of 2) intron (NM_021609, intron 1 of 2) 7277 NM_021609 59289 Mm.258105 NM_021609 ENSMUSG00000044534 Ccbp2 AI464239|CCR10|CCR9|Cmkbr9|D6|MGC130576 chemokine binding protein 2 0.012821 0.414013 0.666867 chr11-221 chr11 109811230 109811386 + 50.8 NA intron (NM_013851, intron 1 of 38) intron (NM_013851, intron 1 of 38) 598 NM_013851 27404 Mm.341004 NM_013851 ENSMUSG00000020620 Abca8b Abca8 ATP-binding cassette, sub-family A (ABC1), member 8b 0.006410 0.452229 -3.746037 chr9-209 chr9 70870567 70870723 + 50.8 NA Intergenic Intergenic 91204 NM_022026 64008 Mm.480680 XM_001003981 ENSMUSG00000032204 Aqp9 1700020I22Rik|AI266899 aquaporin 9 0.025641 0.592357 -2.628098 chr11-207 chr11 84785129 84785285 + 50.8 NA Intergenic Intergenic 11259 NM_007607 12351 Mm.1641 NM_007607 ENSMUSG00000000805 Car4 AW456718|Ca4 carbonic anhydrase 4 0.019231 0.560510 -2.433618 chr14-59 chr14 24238428 24238584 + 50.8 NA Intergenic Intergenic -53969 NM_183208 328365 Mm.227484 XM_001472051 ENSMUSG00000007817 Zmiz1 BC065120|E330020C23|I920194n01|Rai17|Zimp10 zinc finger, MIZ-type containing 1 0.000000 0.515924 3.463774 chr5-262 chr5 111383226 111383382 + 50.8 NA intron (NM_024477, intron 5 of 23) intron (NM_024477, intron 5 of 23) 138859 NR_030482 735278 NR_030482 Mir701 Mirn701|mmu-mir-701 microRNA 701 0.012821 0.509554 -1.839592 chr11-188 chr11 20247590 20247746 + 50.8 NA Intergenic Intergenic -14952 NM_018861 55963 Mm.6379 NM_018861 ENSMUSG00000020142 Slc1a4 ASCT-1|ASCT1|AW045657|SATT solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 0.019231 0.490446 -0.837549 chr4-208 chr4 119032422 119032578 + 50.8 NA intron (NM_001004178, intron 1 of 3) intron (NM_001004178, intron 1 of 3) 4201 NM_001004178 433752 Mm.425205 NM_001004178 ENSMUSG00000062260 AA415398 MGC100084|MGC73851 expressed sequence AA415398 0.006410 0.426752 -6.503518 chr2-215 chr2 163929779 163929935 + 50.8 NA promoter-TSS (NM_017390) promoter-TSS (NM_017390) -75 NM_017390 53878 Mm.99395 NM_017390 ENSMUSG00000040132 Semg1 BB115391|MGC130221|Svs2|SvsII semenogelin I 0.006410 0.407643 -2.740638 chr6-128 chr6 11901984 11902140 + 50.8 NA intron (NM_001168382, intron 4 of 17) intron (NM_001168382, intron 4 of 17) 26182 NM_001168382 75725 Mm.212411 NM_001168382 ENSMUSG00000029629 Phf14 1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|KIAA0783|mKIAA0783 PHD finger protein 14 0.019231 0.515924 -2.740509 chr15-96 chr15 9779940 9780096 + 50.8 NA Intergenic Intergenic -86487 NM_177123 320277 Mm.127822 NM_177123 ENSMUSG00000072663 Spef2 C230086A09Rik sperm flagellar 2 0.012821 0.458599 -2.573541 chrX-26 chrX 129342309 129342465 + 50.8 NA Intergenic Intergenic -14254 NM_013757 27359 Mm.38674 NM_013757 ENSMUSG00000031255 Sytl4 Gph|Slp4 synaptotagmin-like 4 0.006410 0.528662 -0.570530 chr2-205 chr2 138514176 138514332 + 50.8 NA Intergenic RLTR41|LTR|ERV1 2885 NR_035477 100316816 NR_035477 Mir1952 mmu-mir-1952 microRNA mir-1952 0.000000 0.375796 -2.917351 chr5-254 chr5 98317149 98317305 + 50.8 NA Intergenic Intergenic -45963 NM_133738 71914 Mm.24842 NM_133738 ENSMUSG00000029338 Antxr2 2310046B19Rik|AW561899|CMG-2|CMG2|cI-35 anthrax toxin receptor 2 0.012821 0.496815 -1.100099 chr7-122 chr7 30662994 30663150 + 50.8 NA intron (NM_011680, intron 7 of 9) intron (NM_011680, intron 7 of 9) 2491 NM_011680 22282 Mm.322453 NM_011680 ENSMUSG00000058239 Usf2 MGC91056|Usf-2|bHLHb12 upstream transcription factor 2 0.000000 0.522293 -4.001246 chr6-131 chr6 50580492 50580648 + 50.8 NA intron (NM_021892, intron 2 of 2) intron (NM_021892, intron 2 of 2) 3409 NM_021892 60531 Mm.157158 NM_021892 ENSMUSG00000029831 Npvf Rfrp neuropeptide VF precursor 0.025641 0.490446 -1.349535 chr9-211 chr9 75342686 75342842 + 50.8 NA intron (NM_016963, intron 1 of 9) intron (NM_016963, intron 1 of 9) 2802 NM_016963 50875 Mm.38445 NM_016963 ENSMUSG00000058587 Tmod3 U-Tmod|UTMOD tropomodulin 3 0.006410 0.458599 -1.834846 chr7-129 chr7 90133998 90134154 + 50.8 NA intron (NM_029256, intron 2 of 7) intron (NM_029256, intron 2 of 7) 6548 NM_029256 75338 Mm.160714 NM_029256 ENSMUSG00000030617 Ccdc83 4930549K11Rik|4930554C01Rik|4932423M01Rik coiled-coil domain containing 83 0.000000 0.350318 -7.512722 chr18-103 chr18 22639191 22639347 + 50.8 NA intron (NM_001167777, intron 9 of 12) intron (NM_001167777, intron 9 of 12) 151171 NM_001167777 211961 Mm.392310 XM_001474902 ENSMUSG00000045215 Asxl3 C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945 additional sex combs like 3 (Drosophila) 0.000000 0.598726 -12.270723 chr17-136 chr17 27343404 27343560 + 50.8 NA intron (NM_019837, intron 1 of 4) intron (NM_019837, intron 1 of 4) 7559 NM_019837 56409 Mm.473041 NM_019837 ENSMUSG00000024213 Nudt3 1110011B09Rik|AA960325|Dipp nudix (nucleotide diphosphate linked moiety X)-type motif 3 0.006410 0.547771 1.933522 chr18-116 chr18 81241154 81241310 + 50.8 NA Intergenic Lx8|LINE|L1 -92595 NM_178280 20689 Mm.215917 NM_178280 ENSMUSG00000024565 Sall3 B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt sal-like 3 (Drosophila) 0.000000 0.560510 -3.921564 chr2-198 chr2 92265662 92265818 + 50.8 NA Intergenic Intergenic -4383 NM_145832 228368 Mm.479926 NM_145832 ENSMUSG00000049922 Slc35c1 E430007K15Rik|fuct1 solute carrier family 35, member C1 0.012821 0.490446 -4.811705 chr5-272 chr5 138956842 138956998 + 50.8 NA Intergenic Intergenic -51802 NM_030565 80752 Mm.320355 NM_030565 ENSMUSG00000025854 Fam20c C76981|DMP-4|DMP4|KIAA4081|MGC7673|mKIAA4081 family with sequence similarity 20, member C 0.000000 0.388535 -3.541013 chr2-202 chr2 119021420 119021576 + 50.8 NA intron (NM_019454, intron 6 of 10) intron (NM_019454, intron 6 of 10) -3860 NR_030683 100043609 Mm.185068 XM_001480340 Gm14207 OTTMUSG00000015946 predicted gene 14207 0.012821 0.509554 -1.772174 chr6-151 chr6 108413470 108413626 + 50.8 NA intron (NM_010585, intron 44 of 61) intron (NM_010585, intron 44 of 61) -212857 NM_011498 20893 Mm.2436 NM_011498 ENSMUSG00000030103 Bhlhe40 Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14 basic helix-loop-helix family, member e40 0.025641 0.528662 1.775647 chr5-265 chr5 124493042 124493198 + 50.8 NA Intergenic Intergenic -16084 NM_011256 19679 Mm.44261 NM_011256 ENSMUSG00000029406 Pitpnm2 NIR3|RDGBA2|Rdgb2|mKIAA1457 phosphatidylinositol transfer protein, membrane-associated 2 0.032051 0.528662 0.189623 chr7-134 chr7 112289842 112289998 + 50.8 NA intron (NM_020606, intron 1 of 12) intron (NM_020606, intron 1 of 12) 71034 NM_020606 57342 Mm.143763 NM_020606 ENSMUSG00000030770 Parva 2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin parvin, alpha 0.006410 0.420382 -2.378097 chr9-189 chr9 15285922 15286078 + 50.8 NA intron (NM_133214, intron 2 of 2) intron (NM_133214, intron 2 of 2) 30113 NM_133214 170748 Mm.86572 NM_133214 ENSMUSG00000058173 BC017612 Fn5 cDNA sequence BC017612 0.012821 0.515924 -4.134491 chr16-92 chr16 11946155 11946311 + 50.8 NA intron (NM_001174086, intron 2 of 3) intron (NM_001174086, intron 2 of 3) 48543 NM_001174086 72555 Mm.310139 XM_908737 Shisa9 2700045P11Rik|Ckamp44 shisa homolog 9 (Xenopus laevis) 0.000000 0.433121 -2.965999 chr1-257 chr1 14911103 14911259 + 50.8 NA Intergenic L1ME1|LINE|L1 -7105 NM_177781 277328 Mm.186329 NM_177781 ENSMUSG00000032769 Trpa1 Anktm1 transient receptor potential cation channel, subfamily A, member 1 0.000000 0.331210 -2.178656 chr2-220 chr2 178591949 178592105 + 50.8 NA Intergenic Intergenic 232013 NM_198656 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010|MGC56946 cadherin-like 26 0.000000 0.452229 1.791166 chr4-200 chr4 99216545 99216701 + 50.8 NA intron (NM_001081264, intron 2 of 14) intron (NM_001081264, intron 2 of 14) 8976 NM_001081264 320438 Mm.32408 NM_001081264 ENSMUSG00000073792 Alg6 E230028F23Rik asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase) 0.019231 0.496815 -1.272303 chr18-113 chr18 70570491 70570647 + 50.8 NA Intergenic Intergenic 27280 NM_172967 269033 Mm.87470 NM_172967 ENSMUSG00000044906 4930503L19Rik 9930107F24|BB148262|Lars|Las2 RIKEN cDNA 4930503L19 gene 0.019231 0.484076 -2.655687 chr12-192 chr12 117873060 117873216 + 50.8 NA Intergenic Intergenic -85349 NM_175930 217944 Mm.227642 NM_175930 ENSMUSG00000041992 Rapgef5 4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef Rap guanine nucleotide exchange factor (GEF) 5 0.012821 0.439490 2.322369 chr11-196 chr11 68696700 68696856 + 50.8 NA Intergenic Intergenic -7969 NM_177060 320040 Mm.305696 NM_177060 ENSMUSG00000046490 Rnf222 9930039A11Rik ring finger protein 222 0.000000 0.433121 -6.781770 chr18-99 chr18 6103726 6103882 + 50.8 NA intron (NM_001039692, intron 3 of 18) intron (NM_001039692, intron 3 of 18) 32292 NM_029277 75415 Mm.239675 NM_001039692 ENSMUSG00000041225 Arhgap12 2810011M08Rik Rho GTPase activating protein 12 0.006410 0.407643 -2.379597 chr3-150 chr3 90623559 90623715 + 50.8 NA Intergenic Intergenic -3512 NM_026416 67860 Mm.331185 NM_026416 ENSMUSG00000074457 S100a16 2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F S100 calcium binding protein A16 0.032051 0.598726 -4.359240 chr6-155 chr6 139891201 139891357 + 50.8 NA intron (NM_011084, intron 13 of 15) intron (NM_011084, intron 13 of 15) 87429 NM_011084 18705 Mm.391538 XM_001481182 ENSMUSG00000030228 Pik3c2g C80387 phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide 0.019231 0.414013 0.462601 chr11-216 chr11 94063893 94064049 + 50.8 NA Intergenic MLT1D|LTR|MaLR -5302 NM_181819 278507 Mm.342216 NM_181819 ENSMUSG00000044177 Wfikkn2 2610304F08Rik|AY100450|Gasp1|MGC130508|WFIKKNRP WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 0.012821 0.503185 -5.824544 chr7-141 chr7 131851734 131851890 + 50.8 NA Intergenic Intergenic 47010 NM_173410 233919 Mm.208740 NM_173410 ENSMUSG00000040125 Gpr26 9630036A11Rik|A730021D22 G protein-coupled receptor 26 0.000000 0.439490 -1.801923 chr7-124 chr7 43804120 43804276 + 50.8 NA intron (NM_174865, intron 1 of 4) intron (NM_174865, intron 1 of 4) 2386 NM_174865 317652 Mm.479812 NM_174865 ENSMUSG00000055193 Klk15 MGC129160|MGC129345 kallikrein related-peptidase 15 0.019231 0.426752 -6.878866 chr1-284 chr1 92934094 92934250 + 50.8 NA intron (NM_001111312, intron 5 of 12) intron (NM_001111312, intron 5 of 12) -41336 NM_001033408 329207 Mm.295940 NM_001033408 ENSMUSG00000070732 Rbm44 Gm817 RNA binding motif protein 44 0.064103 0.535032 0.112443 chr11-215 chr11 93516726 93516882 + 50.8 NA Intergenic Intergenic 185052 NM_001013375 217109 Mm.379350 NM_001013375 ENSMUSG00000054079 Utp18 6230425C22Rik|6430513M13|MGC141453|MGC141454|Wdr50 UTP18, small subunit (SSU) processome component, homolog (yeast) 0.012821 0.439490 -6.830645 chr3-157 chr3 122475103 122475259 + 50.8 NA intron (NM_013867, intron 3 of 11) intron (NM_013867, intron 3 of 11) 63380 NM_013867 29815 Mm.45815 NM_013867 ENSMUSG00000028121 Bcar3 AI131758|AND-34 breast cancer anti-estrogen resistance 3 0.019231 0.547771 -3.440977 chr5-241 chr5 20318048 20318204 + 50.8 NA intron (NM_172992, intron 4 of 17) intron (NM_172992, intron 4 of 17) 75822 NM_172992 68770 Mm.86410 NM_172992 ENSMUSG00000039987 Phtf2 1110054G21Rik|9530062N20Rik|AI447096|C77923 putative homeodomain transcription factor 2 0.038462 0.439490 -0.720308 chr12-168 chr12 33786864 33787020 + 50.8 NA intron (NM_028139, intron 2 of 3) intron (NM_028139, intron 2 of 3) 54010 NM_028139 380753 Mm.41540 NM_001033436 ENSMUSG00000020564 Atxn7l1 2810423G08Rik|Atxn7l4|MGC28883 ataxin 7-like 1 0.006410 0.484076 -4.657206 chr3-144 chr3 24631880 24632036 + 50.8 NA Intergenic Intergenic 1712422 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.019231 0.439490 -1.655645 chr2-199 chr2 104870267 104870423 + 50.8 NA Intergenic Intergenic -52479 NM_145380 98221 Mm.379278 NM_145380 ENSMUSG00000027170 Eif3m Ga17|MGC118449|Pcid1 eukaryotic translation initiation factor 3, subunit M 0.006410 0.471338 -2.946206 chr2-203 chr2 124910088 124910244 + 50.8 NA intron (NM_001079690, intron 23 of 26) intron (NM_001079690, intron 23 of 26) -28522 NM_001159646 110074 Mm.471988 NM_001159646 ENSMUSG00000027203 Dut 5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase deoxyuridine triphosphatase 0.000000 0.407643 -4.123435 chr1-273 chr1 72401907 72402063 + 50.8 NA intron (NM_001045533, intron 1 of 3) intron (NM_001045533, intron 1 of 3) 67787 NM_001045533 381270 Mm.337023 NM_001045533 ENSMUSG00000039372 March4 BC056494|KIAA1399|mKIAA1399 membrane-associated ring finger (C3HC4) 4 0.012821 0.515924 -2.256701 chr13-104 chr13 9035871 9036027 + 50.8 NA Intergenic MLT1-int|LTR|MaLR -40691 NM_027000 69237 Mm.41800 NM_027000 ENSMUSG00000021149 Gtpbp4 2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1 GTP binding protein 4 0.006410 0.426752 -5.857752 chr9-201 chr9 56680502 56680658 + 50.8 NA intron (NM_139001, intron 1 of 9) intron (NM_139001, intron 1 of 9) 17340 NM_139001 121021 Mm.41329 NM_139001 ENSMUSG00000032911 Cspg4 4732461B14Rik|AN2|NG2 chondroitin sulfate proteoglycan 4 0.006410 0.560510 -1.379052 chr7-119 chr7 16221469 16221625 + 50.8 NA promoter-TSS (NM_001162950) promoter-TSS (NM_001162950) -598 NM_001162950 53417 Mm.135110 NM_001162950 ENSMUSG00000004328 Hif3a Ipas|MOP7|NEPAS|bHLHe17 hypoxia inducible factor 3, alpha subunit 0.032051 0.490446 0.356830 chr17-138 chr17 31173914 31174070 + 50.8 NA intron (NM_001163748, intron 6 of 18) intron (NM_001163748, intron 6 of 18) 59049 NM_001163748 18585 Mm.10812 NM_001163748 ENSMUSG00000041119 Pde9a PDE9A1 phosphodiesterase 9A 0.006410 0.477707 1.368840 chr3-158 chr3 136681954 136682110 + 50.8 NA intron (NM_008913, intron 1 of 13) intron (NM_008913, intron 1 of 13) 73876 NM_008913 19055 Mm.331389 NM_008913 ENSMUSG00000028161 Ppp3ca 2900074D19Rik|AI841391|AW413465|CN|Caln|Calna|CnA|MGC106804 protein phosphatase 3, catalytic subunit, alpha isoform 0.025641 0.445860 -4.100097 chr11-200 chr11 75029534 75029690 + 50.8 NA intron (NM_177708, intron 1 of 1) intron (NM_177708, intron 1 of 1) 19425 NM_177708 237847 Mm.82661 NM_177708 ENSMUSG00000045287 Rtn4rl1 Ngr3|Ngrh2|Ngrl2 reticulon 4 receptor-like 1 0.012821 0.566879 -2.835210 chr9-198 chr9 53119075 53119231 + 50.8 NA intron (NM_176846, intron 4 of 5) intron (NM_176846, intron 4 of 5) -27264 NM_212445 68304 Mm.427519 NM_212445 ENSMUSG00000034487 Kdelc2 2010004J24Rik|4833410J10Rik|AW549401 KDEL (Lys-Asp-Glu-Leu) containing 2 0.025641 0.458599 -0.994253 chr16-107 chr16 93614420 93614576 + 50.8 NA intron (NM_026700, intron 2 of 3) intron (NM_026700, intron 2 of 3) 14052 NM_027293 70028 Mm.23230 NM_026700 ENSMUSG00000022946 Dopey2 0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933 dopey family member 2 0.012821 0.471338 -3.672749 chr19-45 chr19 17026609 17026765 + 50.8 NA intron (NM_181348, intron 1 of 19) intron (NM_181348, intron 1 of 19) 3551 NM_181348 353211 Mm.480716 NM_181348 Prune2 6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|KIAA0367|mKIAA0367 prune homolog 2 (Drosophila) 0.019231 0.547771 -3.923846 chr5-264 chr5 120241963 120242119 + 50.8 NA Intergenic Intergenic -135088 NM_028762 74111 Mm.41022 NM_028762 ENSMUSG00000029594 Rbm19 1200009A02Rik|AV302714|KIAA0682|NPO RNA binding motif protein 19 0.025641 0.547771 -3.608030 chr2-218 chr2 173210032 173210188 + 50.8 NA Intergenic L4|LINE|RTE 44580 NM_028158 72221 Mm.46132 XM_884453 ENSMUSG00000027518 1700021F07Rik - RIKEN cDNA 1700021F07 gene 0.025641 0.445860 -5.091317 chrX-25 chrX 90013717 90013873 + 50.8 NA Intergenic Intergenic 71019 NM_145630 236900 Mm.12775 NM_145630 ENSMUSG00000035232 Pdk3 2610001M10Rik|AI035637|MGC6383 pyruvate dehydrogenase kinase, isoenzyme 3 0.006410 0.363057 0.610530 chr10-165 chr10 125728136 125728292 + 50.8 NA Intergenic Intergenic 359047 NM_177152 320398 Mm.275586 NM_177152 ENSMUSG00000020105 Lrig3 9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016 leucine-rich repeats and immunoglobulin-like domains 3 0.019231 0.375796 1.545275 chr17-131 chr17 9101430 9101586 + 50.8 NA Intergenic Intergenic -95312 NR_027881 67791 Mm.158175 NR_027881 6530411M01Rik - RIKEN cDNA 6530411M01 gene 0.019231 0.509554 -7.015755 chr17-139 chr17 31465490 31465646 + 50.8 NA Intergenic Intergenic 58914 NM_013501 12954 Mm.1228 NM_013501 ENSMUSG00000024041 Cryaa AI323437|Acry-1|Crya-1|Crya1|DAcry-1|lop18 crystallin, alpha A 0.006410 0.554140 -3.307542 chr10-144 chr10 39225807 39225963 + 50.8 NA intron (NM_001122893, intron 12 of 13) intron (NM_001122893, intron 12 of 13) -76464 NM_134000 103213 Mm.436686 NM_134000 ENSMUSG00000019842 Traf3ip2 AI429613|Act1 TRAF3 interacting protein 2 0.051282 0.522293 1.950971 chr6-144 chr6 93105821 93105977 + 50.8 NA Intergenic Intergenic 199814 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.006410 0.484076 2.866063 chr9-202 chr9 57076539 57076695 + 50.8 NA Intergenic Intergenic -15881 NM_028820 74211 Mm.428905 NM_028820 ENSMUSG00000032300 1700017B05Rik AA682102|D9Ertd278e|MGC144191 RIKEN cDNA 1700017B05 gene 0.012821 0.535032 -4.426817 chr16-97 chr16 28771322 28771478 + 50.8 NA intron (NM_177718, intron 1 of 1) intron (NM_177718, intron 1 of 1) 78045 NM_177718 239796 Mm.155887 NM_177718 ENSMUSG00000051065 1600021P15Rik A430031N04|C87006|MGC103296 RIKEN cDNA 1600021P15 gene 0.012821 0.426752 -4.609969 chr8-171 chr8 130335202 130335358 + 50.8 NA intron (NM_033620, intron 20 of 24) intron (NM_033620, intron 20 of 24) 149539 NM_001013580 93742 Mm.299254 NM_001013580 ENSMUSG00000025812 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) 0.012821 0.464968 4.056977 chr5-281 chr5 151288500 151288656 + 50.8 NA Intergenic Intergenic 67593 NM_013823 16591 Mm.6500 NM_013823 ENSMUSG00000058488 Kl alpha-kl klotho 0.000000 0.439490 -1.120666 chr18-101 chr18 17894229 17894385 + 50.8 NA Intergenic Intergenic -515807 NR_033607 664619 Mm.250005 NR_033607 4921533I20Rik - Riken cDNA 4921533I20 gene 0.006410 0.401274 -1.933603 chr4-211 chr4 132218860 132219016 + 50.8 NA Intergenic Intergenic -24311 NM_145553 230789 Mm.11473 NM_001163792 ENSMUSG00000028878 Fam76a MGC11672 family with sequence similarity 76, member A 0.019231 0.547771 -3.074825 chr6-141 chr6 87243186 87243342 + 50.8 NA intron (NM_054041, intron 8 of 17) intron (NM_054041, intron 8 of 17) 58145 NM_054041 69538 Mm.232525 NM_054041 ENSMUSG00000033420 Antxr1 2310008J16Rik|2810405N18Rik|Antrx1|Tem8 anthrax toxin receptor 1 0.006410 0.477707 -1.059678 chr7-125 chr7 65347343 65347499 + 50.8 NA Intergenic ID_B1|SINE|B4 -97227 NM_009386 21872 Mm.4342 NM_001163574 ENSMUSG00000030516 Tjp1 ZO1 tight junction protein 1 0.019231 0.522293 -2.605888 chr15-95 chr15 8632430 8632586 + 50.8 NA intron (NM_148938, intron 3 of 9) intron (NM_148938, intron 3 of 9) 25514 NM_148938 20512 Mm.204834 NM_148938 ENSMUSG00000005360 Slc1a3 AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 0.019231 0.458599 -0.494473 chr11-218 chr11 98168519 98168675 + 50.8 NA intron (NM_144828, intron 4 of 6) intron (NM_144828, intron 4 of 6) 3770 NM_144828 19049 Mm.45372 NM_144828 ENSMUSG00000061718 Ppp1r1b AU040756|DARPP-32|Darpp32 protein phosphatase 1, regulatory (inhibitor) subunit 1B 0.006410 0.598726 -1.249393 chr1-285 chr1 93267097 93267253 + 50.8 NA intron (NM_011066, intron 9 of 22) intron (NM_011066, intron 9 of 22) 22559 NM_011066 18627 Mm.218141 NM_011066 ENSMUSG00000055866 Per2 mKIAA0347|mPer2 period homolog 2 (Drosophila) 0.019231 0.566879 -3.586514 chr9-190 chr9 27673659 27673815 + 50.8 NA intron (NM_177906, intron 1 of 7) intron (NM_177906, intron 1 of 7) 133023 NM_177906 330908 Mm.379474 NM_177906 ENSMUSG00000062257 Opcml 2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|MGC99974|Obcam opioid binding protein/cell adhesion molecule-like 0.006410 0.420382 -3.501426 chr10-156 chr10 92524803 92524959 + 50.8 NA Intergenic Intergenic -65793 NM_146239 237459 Mm.478891 NM_146239 ENSMUSG00000020015 Cdk17 6430598J10Rik|MGC25109|Pctk2 cyclin-dependent kinase 17 0.006410 0.515924 -3.740065 chr17-148 chr17 45556849 45557005 + 50.8 NA Intergenic Intergenic -17657 NM_026768 68565 Mm.287443 NM_026768 ENSMUSG00000023967 Mrps18a 1110004O20Rik|C79712|MGC66832 mitochondrial ribosomal protein S18A 0.006410 0.484076 -4.512471 chr7-140 chr7 129574139 129574295 + 50.8 NA Intergenic Intergenic 191207 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|MGC47139|mKIAA1351 WD repeat domain 11 0.019231 0.477707 3.340276 chr14-58 chr14 23640386 23640542 + 50.8 NA Intergenic Intergenic 317319 NM_011297 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 MGC107549 ribosomal protein S24 0.025641 0.585987 -7.371595 chr8-162 chr8 120255026 120255182 + 50.8 NA intron (NM_028941, intron 1 of 20) intron (NM_028941, intron 1 of 20) 19958 NM_028941 74440 Mm.233181 XM_001004724 ENSMUSG00000034390 4933407C03Rik 5830471E12Rik|AI314065|AI464126|Cmip RIKEN cDNA 4933407C03 gene 0.006410 0.579618 2.877664 chr17-146 chr17 43352313 43352469 + 50.8 NA intron (NM_207649, intron 2 of 4) intron (NM_207649, intron 2 of 4) -63854 NM_030598 53901 Mm.251242 NM_030598 ENSMUSG00000039601 Rcan2 Csp2|Dscr1l1|MCIP2|ZAKI-4 regulator of calcineurin 2 0.012821 0.414013 -3.700039 chr10-153 chr10 82570945 82571101 + 50.8 NA intron (NM_021439, intron 2 of 2) intron (NM_021439, intron 2 of 2) 155728 NM_021439 58250 Mm.360747 NM_021439 ENSMUSG00000034612 Chst11 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s carbohydrate sulfotransferase 11 0.006410 0.433121 -0.930622 chr15-104 chr15 38226517 38226673 + 50.8 NA Intergenic Intergenic 18701 NM_013692 21847 Mm.4292 NM_013692 ENSMUSG00000037465 Klf10 AI115143|EGR[a]|Egral|Gdnfif|Tieg|Tieg1|mGIF Kruppel-like factor 10 0.012821 0.420382 -4.677978 chr1-286 chr1 93320926 93321082 + 50.8 NA Intergenic Intergenic -4069 NM_028718 74019 Mm.479296 NM_028718 ENSMUSG00000034292 Traf3ip1 3930402D05Rik|AU041749|MGC143957|MIP-T3 TRAF3 interacting protein 1 0.000000 0.471338 -3.446763 chr19-48 chr19 29484802 29484958 + 50.8 NA intron (NM_021396, intron 1 of 5) intron (NM_021396, intron 1 of 5) 7965 NM_021396 58205 Mm.116737 NM_021396 ENSMUSG00000016498 Pdcd1lg2 B7-DC|Btdc|F730015O22Rik|MGC124039|MGC124040|PD-L2 programmed cell death 1 ligand 2 0.019231 0.477707 -4.620368 chr11-206 chr11 83810773 83810929 + 50.8 NA intron (NM_001115009, intron 11 of 21) intron (NM_001115009, intron 11 of 21) 30186 NM_194341 217030 Mm.82680 NM_001115009 ENSMUSG00000034940 Synrg AF007009|Ap1gbp1|C76297|L71-5|SYNG synergin, gamma 0.006410 0.541401 4.834371 chr10-163 chr10 124169101 124169257 + 50.8 NA Intergenic Intergenic 297046 NR_028310 75030 Mm.159403 NR_028310 4930503E24Rik - eukaryotic translation initiation factor 3, subunit I pseudogene 0.006410 0.382166 -6.886459 chr1-294 chr1 134145014 134145170 + 50.8 NA intron (NM_028778, intron 1 of 6) intron (NM_028778, intron 1 of 6) 1409 NM_028778 74137 Mm.445779 NM_001195025 ENSMUSG00000009772 Nuak2 1200013B22Rik|Omphk2|Snark|mKIAA0537 NUAK family, SNF1-like kinase, 2 0.019231 0.471338 -2.544392 chr6-147 chr6 99847094 99847250 + 50.8 NA Intergenic Intergenic -155317 NM_001170419 50501 Mm.87365 NM_001037539 ENSMUSG00000030069 Prok2 Bv8|PK2|Prok1 prokineticin 2 0.012821 0.484076 -3.114431 chr11-222 chr11 113053047 113053203 + 50.8 NA Intergenic MTD|LTR|MaLR -35197 NR_015556 72386 Mm.266961 XM_001472535 2610035D17Rik - RIKEN cDNA 2610035D17 gene 0.025641 0.420382 3.363737 chr1-275 chr1 75471433 75471589 + 50.8 NA Intergenic Intergenic 42098 NM_009208 20536 Mm.5053 NM_009208 ENSMUSG00000006576 Slc4a3 A930038D23Rik|Ae3 solute carrier family 4 (anion exchanger), member 3 0.000000 0.464968 -2.862083 chr5-260 chr5 106166103 106166259 + 50.8 NA Intergenic Intergenic 49312 NM_018759 54367 Mm.248876 NM_018759 ENSMUSG00000029290 Zfp326 5730470H14Rik|ZAN75|Znf326 zinc finger protein 326 0.012821 0.452229 -3.951082 chr2-214 chr2 163278297 163278453 + 50.8 NA Intergenic Intergenic -15379 NM_181734 76080 Mm.89828 NM_029512 ENSMUSG00000017679 Ttpal 3110080A02Rik|5830472M02Rik tocopherol (alpha) transfer protein-like 0.012821 0.458599 -3.789027 chr17-126 chr17 3040689 3040845 + 50.8 NA promoter-TSS (NR_003519) promoter-TSS (NR_003519) -102 NR_003519 328734 Mm.335641 XM_001474127 Pisd-ps2 D030013I16Rik phosphatidylserine decarboxylase, pseudogene 2 0.064103 0.598726 -7.054163 chr7-135 chr7 113519322 113519478 + 50.8 NA Intergenic Intergenic -37778 NM_145584 233744 Mm.334160 NM_145584 ENSMUSG00000038156 Spon1 AI666765|AW455831|BC020531|D330035F22Rik|FSP spondin 1, (f-spondin) extracellular matrix protein 0.006410 0.490446 1.442035 chr13-126 chr13 98634565 98634721 + 50.8 NA Intergenic Intergenic 292840 NM_007930 13803 Mm.481214 NM_007930 ENSMUSG00000041773 Enc1 Nrpb|PIG10 ectodermal-neural cortex 1 0.012821 0.464968 0.212962 chr11-183 chr11 4601946 4602102 + 50.8 NA TTS (NM_197979) TTS (NM_197979) 2323 NM_197979 66152 Mm.269736 NM_197979 ENSMUSG00000059534 Uqcr10 1110020P15Rik|AA960494|Ucrc ubiquinol-cytochrome c reductase, complex III subunit X 0.032051 0.471338 -2.735080 chr8-168 chr8 128747440 128747596 + 50.8 NA intron (NM_175561, intron 10 of 33) intron (NM_175561, intron 10 of 33) 36865 NM_175561 270109 Mm.145535 NM_175561 ENSMUSG00000060212 Pcnxl2 A830048P05|AU067631|E330039K12Rik|KIAA0435|mKIAA0435 pecanex-like 2 (Drosophila) 0.012821 0.522293 -3.285413 chr3-143 chr3 23173649 23173805 + 50.8 NA Intergenic Intergenic 731714 NR_004439 19784 NR_004439 Rprl2 RPRH2|RPRH3|Rmrp3 ribonuclease P RNA-like 2 0.000000 0.445860 -3.316344 chr3-151 chr3 95074942 95075098 + 50.8 NA intron (NM_175356, intron 2 of 10) intron (NM_175356, intron 2 of 10) 14886 NM_175356 107650 Mm.217222 NM_175356 ENSMUSG00000038861 Pi4kb AA437822|ESTM41|Pik4cb phosphatidylinositol 4-kinase, catalytic, beta polypeptide 0.012821 0.522293 -4.668386 chr17-127 chr17 4817339 4817495 + 50.8 NA Intergenic Intergenic -134138 NM_001085355 239985 Mm.133401 XM_001474848 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235 AT rich interactive domain 1B (SWI-like) 0.012821 0.350318 2.135292 chr11-217 chr11 95075285 95075441 + 50.8 NA Intergenic CpG -2255 NM_053093 93670 Mm.40085 NM_053093 ENSMUSG00000020872 Tac4 AW489379|PPT-C tachykinin 4 0.108974 0.694268 -2.072309 chr9-208 chr9 70640173 70640329 + 50.8 NA intron (NM_008280, intron 1 of 8) intron (NM_008280, intron 1 of 8) 93774 NM_008280 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl lipase, hepatic 0.019231 0.471338 -5.243870 chr2-206 chr2 141911159 141911315 + 50.8 NA intron (NM_001013802, intron 11 of 18) intron (NM_001013802, intron 11 of 18) 681668 NM_001081133 16558 Mm.251934 NM_001081133 ENSMUSG00000038844 Kif16b 8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590 kinesin family member 16B 0.006410 0.369427 -0.815332 chr9-191 chr9 31621153 31621309 + 50.8 NA intron (NM_013800, intron 1 of 3) intron (NM_013800, intron 1 of 3) 41619 NM_013800 12023 Mm.261044 NM_013800 ENSMUSG00000032033 Barx2 2310006E12Rik|Barx2b BarH-like homeobox 2 0.019231 0.477707 -5.146064 chr4-216 chr4 151694095 151694251 + 50.8 NA Intergenic Intergenic 152834 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.032051 0.490446 -10.325751 chr10-139 chr10 16279743 16279899 + 50.8 NA Intergenic Intergenic -1132822 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.000000 0.439490 -1.264910 chr1-295 chr1 136998871 136999027 + 50.8 NA Intergenic Intergenic -14857 NM_134438 171469 Mm.272290 NM_134438 ENSMUSG00000026424 Gpr37l1 AW047233|CAG-18|D0Kist8 G protein-coupled receptor 37-like 1 0.012821 0.509554 -5.768445 chr4-198 chr4 87942459 87942615 + 50.8 NA Intergenic Intergenic -32380 NM_025760 66775 Mm.386788 NM_025760 ENSMUSG00000028497 Ptplad2 4933428I03Rik|HACD4 protein tyrosine phosphatase-like A domain containing 2 0.000000 0.363057 -4.634844 chr7-126 chr7 65834192 65834348 + 50.8 NA intron (NM_011048, intron 7 of 21) intron (NM_011048, intron 7 of 21) 93185 NM_011048 18553 Mm.294007 XM_355911 ENSMUSG00000030513 Pcsk6 C86343|Pace4|SPC4 proprotein convertase subtilisin/kexin type 6 0.019231 0.598726 5.185978 chr17-145 chr17 42729519 42729675 + 50.8 NA Intergenic ORR1D2|LTR|MaLR -6019 NM_133776 77596 Mm.159950 NM_133776 ENSMUSG00000041293 Gpr110 5031409J19Rik|KPG_009 G protein-coupled receptor 110 0.012821 0.503185 -4.641320 chr9-200 chr9 56307250 56307406 + 50.8 NA Intergenic L2|LINE|L2 90346 NM_025812 66867 Mm.150856 NM_025812 ENSMUSG00000032329 Hmg20a 1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf high mobility group 20A 0.012821 0.503185 -5.737350 chr12-176 chr12 51940408 51940564 + 50.8 NA Intergenic Intergenic -329363 NM_001167964 217558 Mm.253264 NM_001015099 ENSMUSG00000035293 G2e3 6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333 G2/M-phase specific E3 ubiquitin ligase 0.025641 0.407643 -4.673553 chr14-62 chr14 78930519 78930675 + 50.8 NA Intergenic MLT1H2|LTR|MaLR 196141 NM_001030294 380924 Mm.26456 NM_001030294 ENSMUSG00000022026 Olfm4 GC1|GW112|Gm296|Gm913|OlfD|pPD4 olfactomedin 4 0.000000 0.414013 -5.171096 chr19-49 chr19 29535226 29535382 + 50.8 NA intron (NM_021396, intron 5 of 5) intron (NM_021396, intron 5 of 5) 52680 NR_015567 77779 Mm.458738 NR_015567 A930007I19Rik - RIKEN cDNA A930007I19 gene 0.019231 0.414013 1.358407 chr3-163 chr3 152375559 152375715 + 50.8 NA intron (NM_198416, intron 4 of 13) intron (NM_198416, intron 4 of 13) 41558 NM_198416 108946 Mm.379292 NM_001080755 ENSMUSG00000039068 Zzz3 3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514 zinc finger, ZZ domain containing 3 0.006410 0.471338 -3.072594 chr1-304 chr1 185828718 185828874 + 50.8 NA Intergenic Intergenic 93080 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5 dual specificity phosphatase 10 0.006410 0.439490 -4.261682 chr15-111 chr15 73557678 73557834 + 50.8 NA intron (NM_001166388, intron 1 of 5) intron (NM_001166388, intron 1 of 5) 5572 NM_001166388 19245 Mm.390807 NM_001166388 ENSMUSG00000059895 Ptp4a3 AV088979|Prl-3|pPtp4a3 protein tyrosine phosphatase 4a3 0.000000 0.579618 -0.292662 chr15-109 chr15 72696596 72696752 + 50.8 NA intron (NM_001164642, intron 16 of 16) intron (NM_001164642, intron 16 of 16) -59094 NR_002864 353342 Mm.440245 NR_002864 Peg13 - paternally expressed 13 0.025641 0.503185 -6.609282 chr14-56 chr14 19362956 19363112 + 50.8 NA intron (NM_030180, intron 13 of 20) intron (NM_030180, intron 13 of 20) -27909 NM_008914 19056 Mm.474197 NM_008914 ENSMUSG00000021816 Ppp3cb 1110063J16Rik|Calnb|CnAbeta protein phosphatase 3, catalytic subunit, beta isoform 0.000000 0.458599 6.382766 chr10-162 chr10 117550122 117550278 + 50.8 NA intron (NM_001162905, intron 3 of 13) intron (NM_001162905, intron 3 of 13) 5421 NM_010785 17245 Mm.442618 NM_001162904 ENSMUSG00000020212 Mdm1 Arrd2|Mdm-1 transformed mouse 3T3 cell double minute 1 0.044872 0.560510 -6.510025 chr19-44 chr19 16304353 16304509 + 50.8 NA intron (NM_008139, intron 2 of 6) intron (NM_008139, intron 2 of 6) 73315 NR_033228 595139 Mm.443406 NR_033228 E030024N20Rik 9030417F11Rik|Ppia-ps8 peptidylprolyl isomerase A pseudogene 8 0.000000 0.394904 -3.564353 chr8-163 chr8 121404141 121404297 + 50.8 NA intron (NM_019707, intron 2 of 13) intron (NM_019707, intron 2 of 13) 234488 NM_019707 12554 Mm.334841 NM_019707 ENSMUSG00000031841 Cdh13 4932416G01Rik|Cdht|T-cadherin|Tcad cadherin 13 0.019231 0.471338 -5.118745 chr5-271 chr5 135236286 135236442 + 50.8 NA Intergenic Intergenic -4803 NM_009903 12740 Mm.7339 NM_009903 ENSMUSG00000047501 Cldn4 Cep-r|Cpetr|Cpetr1 claudin 4 0.012821 0.598726 -3.874220 chr13-107 chr13 37060075 37060231 + 50.8 NA Intergenic LTR33A|LTR|ERVL -2443 NM_001166391 74145 Mm.235105 NM_001166391 ENSMUSG00000039109 F13a1 1200014I03Rik|AI462306|F13a coagulation factor XIII, A1 subunit 0.019231 0.484076 -1.682868 chr1-270 chr1 63923411 63923567 + 50.8 NA Intergenic Intergenic 24487 NR_027824 433315 Mm.342696 NM_001013800 Gm13749 OTTMUSG00000013918 predicted gene 13749 0.025641 0.503185 -5.515039 chr4-187 chr4 11164134 11164290 + 50.8 NA intron (NM_001159595, intron 8 of 26) intron (NM_001159595, intron 8 of 26) 17194 NM_178112 72656 Mm.246713 NM_001159595 ENSMUSG00000040738 Ints8 2810013E07Rik|AV063769|D130008D20Rik integrator complex subunit 8 0.006410 0.407643 -2.617816 chr9-215 chr9 96908423 96908579 + 50.8 NA intron (NM_138756, intron 2 of 6) intron (NM_138756, intron 2 of 6) 11892 NM_138756 192287 Mm.475433 NM_138756 ENSMUSG00000032449 Slc25a36 C330005L02Rik solute carrier family 25, member 36 0.006410 0.388535 -6.788572 chr2-209 chr2 152430949 152430972 + 50.8 NA Intergenic CpG 3246 NM_010495 15901 Mm.444 NM_010495 ENSMUSG00000042745 Id1 AI323524|D2Wsu140e|Idb1|bHLHb24 inhibitor of DNA binding 1 0.173913 0.708333 -9.038930 chr3-154 chr3 119580031 119580187 + 50.8 NA Intergenic Lx3C|LINE|L1 195283 NM_019550 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 0.006410 0.433121 -2.697426 chr11-203 chr11 80840907 80841063 + 50.8 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) 128113 NM_007384 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.006410 0.433121 -3.461805 chr11-211 chr11 88197342 88197498 + 50.8 NA intron (NM_054043, intron 10 of 13) intron (NM_054043, intron 10 of 13) 87183 NM_028859 74297 Mm.207320 XM_484061 ENSMUSG00000034031 1700106J16Rik - RIKEN cDNA 1700106J16 gene 0.012821 0.535032 -4.767301 chr18-108 chr18 47190219 47190375 + 50.8 NA intron (NM_178377, intron 5 of 6) intron (NM_178377, intron 5 of 6) 106091 NM_178377 69456 Mm.210734 NM_178377 ENSMUSG00000042705 Commd10 2310003A05Rik|AU019438|DRWMS2 COMM domain containing 10 0.006410 0.509554 -2.523620 chr9-217 chr9 109817745 109817901 + 50.8 NA intron (NM_008633, intron 1 of 18) intron (NM_008633, intron 1 of 18) 40874 NM_008633 17758 Mm.443428 NM_008633 ENSMUSG00000032479 Mtap4 AA407148|MAP4|Mtap-4 microtubule-associated protein 4 0.006410 0.394904 -3.574183 chr5-280 chr5 150475565 150475721 + 50.8 NA Intergenic Intergenic -52665 NM_172887 320365 Mm.454348 XM_001477828 ENSMUSG00000056602 Fry 13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|KIAA4143|cg003|mKIAA4143 furry homolog (Drosophila) 0.000000 0.420382 -7.121135 chr13-110 chr13 49134161 49134317 + 50.8 NA intron (NM_029361, intron 2 of 27) intron (NM_029361, intron 2 of 27) 25712 NM_029361 75607 Mm.342723 NM_029361 ENSMUSG00000037989 Wnk2 1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760 WNK lysine deficient protein kinase 2 0.019231 0.554140 -4.906234 chr6-136 chr6 61488929 61489085 + 50.8 NA intron (NM_001164316, intron 5 of 10) intron (NM_001164316, intron 5 of 10) 379105 NM_183310 232035 Mm.376946 XM_908676 ENSMUSG00000039578 Fam190a 6230405M12Rik|C130092O11Rik|MGC130404|MGC130405 family with sequence similarity 190, member A 0.006410 0.414013 -5.041599 chr14-57 chr14 23576583 23576739 + 50.8 NA Intergenic Intergenic 253516 NM_011297 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 MGC107549 ribosomal protein S24 0.006410 0.420382 -1.234481 chr8-157 chr8 77739673 77739829 + 50.8 NA Intergenic Intergenic -29494 NM_027837 71597 Mm.158735 NM_027837 ENSMUSG00000031621 Isx 9130012O13Rik|Pix-1 intestine specific homeobox 0.006410 0.445860 2.994561 chr17-151 chr17 74099789 74099945 + 50.8 NA Intergenic Intergenic 99978 NM_133771 76890 Mm.311874 NM_133771 ENSMUSG00000058704 Memo1 0610016J10Rik|D930048L02Rik mediator of cell motility 1 0.025641 0.528662 -1.342493 chr2-224 chr2 180206522 180206678 + 50.8 NA TTS (NM_173031) TTS (NM_173031) -3727 NM_145851 252966 Mm.386884 NM_145851 ENSMUSG00000038990 Cables2 ik3-2 CDK5 and Abl enzyme substrate 2 0.012821 0.547771 3.430913 chr4-220 chr4 154916770 154916926 + 50.8 NA Intergenic Intergenic -17298 NR_029587 387243 NR_029587 Mir200b Mirn200b microRNA 200b 0.000000 0.426752 -2.473671 chr17-134 chr17 25175294 25175450 + 50.8 NA Intergenic Intergenic -13989 NM_001163691 58226 Mm.447208 NM_001163691 ENSMUSG00000024112 Cacna1h Cav3.2|MNCb-1209|alpha13.2 calcium channel, voltage-dependent, T type, alpha 1H subunit 0.019231 0.426752 -4.321887 chr8-150 chr8 11662069 11662225 + 50.8 NA intron (NM_024271, intron 3 of 5) intron (NM_024271, intron 3 of 5) 16575 NM_024271 76413 Mm.440041 NM_024271 ENSMUSG00000031509 1700016D06Rik - RIKEN cDNA 1700016D06 gene 0.012821 0.515924 4.381131 chr9-194 chr9 46866666 46866822 + 50.8 NA Intergenic L2|LINE|L2 202147 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.025641 0.503185 -3.047776 chr18-111 chr18 60774381 60774537 + 50.8 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -24785 NM_177340 104027 Mm.440740 XM_001479956 ENSMUSG00000043079 Synpo 9030217H17Rik|9130229N11|9330140I15Rik|AW046661 synaptopodin 0.025641 0.573248 -3.347149 chr3-162 chr3 151540884 151541040 + 50.8 NA Intergenic Intergenic 146383 NM_133871 99899 Mm.30756 NM_133871 ENSMUSG00000028037 Ifi44 A430056A10Rik|AW261460|MTAP44|p44 interferon-induced protein 44 0.019231 0.414013 -2.039449 chr16-101 chr16 68574874 68575030 + 50.8 NA Intergenic Intergenic -1035784 NM_178721 239857 Mm.394300 NM_001145977 ENSMUSG00000064115 Cadm2 2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM2 cell adhesion molecule 2 0.000000 0.331210 1.141568 chr10-143 chr10 21432879 21433035 + 50.8 NA Intergenic Intergenic -138642 NM_001161845 20393 Mm.28405 NM_001161845 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 0.019231 0.509554 2.240456 chr12-177 chr12 58362597 58362753 + 50.8 NA intron (NM_001164370, intron 9 of 9) intron (NM_001164370, intron 9 of 9) 101458 NM_008259 15375 Mm.4578 NM_008259 ENSMUSG00000035451 Foxa1 Hnf-3a|Hnf3a|Tcf-3a|Tcf3a forkhead box A1 0.032051 0.414013 5.181121 chr13-106 chr13 32176801 32176957 + 50.8 NA intron (NM_146041, intron 4 of 10) intron (NM_146041, intron 4 of 10) 169130 NM_146041 218138 Mm.247143 NM_146041 ENSMUSG00000038372 Gmds BC031788|C87208|MGC103045|MGC18773 GDP-mannose 4, 6-dehydratase 0.019231 0.464968 -1.905420 chr9-218 chr9 117291477 117291633 + 50.8 NA intron (NM_001172121, intron 1 of 14) intron (NM_001172121, intron 1 of 14) 187056 NM_001172121 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.012821 0.528662 -5.916441 chr5-278 chr5 144605852 144606008 + 50.8 NA intron (NM_025833, intron 1 of 13) intron (NM_025833, intron 1 of 13) 5709 NM_025833 66898 Mm.18814 NM_025833 ENSMUSG00000038859 Baiap2l1 1300006M19Rik|AI585895|IRTKS BAI1-associated protein 2-like 1 0.012821 0.420382 -3.649423 chr4-188 chr4 15248954 15249110 + 50.8 NA Intergenic Intergenic 56066 NM_181401 100201 Mm.394111 NM_181401 ENSMUSG00000043252 Tmem64 9630015D15Rik|AI790744|AV300874 transmembrane protein 64 0.000000 0.464968 -7.069348 chr5-256 chr5 99627869 99628025 + 50.8 NA intron (NR_030692, intron 2 of 3) intron (NR_030692, intron 2 of 3) -134718 NM_145839 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.044872 0.503185 3.459623 chr8-149 chr8 11192898 11193054 + 50.8 NA Intergenic L1MCa|LINE|L1 119822 NM_009931 12826 Mm.738 NM_009931 ENSMUSG00000031502 Col4a1 Bru|Col4a-1|Del(8)44H|Raw|Svc collagen, type IV, alpha 1 0.000000 0.363057 -1.798989 chr18-117 chr18 82646602 82646758 + 50.8 NA intron (NM_001025245, intron 2 of 3) intron (NM_001025245, intron 2 of 3) 37130 NM_001025245 17196 Mm.454459 NM_001025245 ENSMUSG00000041607 Mbp C76307|Hmbpr|R75289|golli-mbp|mld|shi myelin basic protein 0.012821 0.458599 -1.178289 chr3-149 chr3 63925837 63925993 + 50.8 NA intron (NM_001177732, intron 1 of 23) intron (NM_001177732, intron 1 of 23) 13005 NM_001177733 269437 Mm.316391 NM_001177732 ENSMUSG00000036834 Plch1 BC042549|MGC57096|PLCeta1|Plcl3 phospholipase C, eta 1 0.000000 0.363057 -5.161806 chr5-269 chr5 131881728 131881884 + 50.8 NA intron (NM_177047, intron 5 of 18) intron (NM_177047, intron 5 of 18) -289581 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.006410 0.439490 4.635451 chr15-108 chr15 72269446 72269602 + 50.8 NA Intergenic Intergenic 104011 NM_001033876 223604 Mm.386856 NM_001033876 ENSMUSG00000036760 Kcnk9 Task3 potassium channel, subfamily K, member 9 0.006410 0.331210 -4.791725 chr1-280 chr1 91119789 91119945 + 50.8 NA Intergenic Intergenic -166114 NM_178119 347722 Mm.291135 NM_001037136 ENSMUSG00000055013 Agap1 Centg2|Ggap1|R75364|mKIAA1099 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.000000 0.350318 0.249862 chr11-210 chr11 87239473 87239629 + 50.8 NA intron (NM_031386, intron 1 of 30) intron (NM_031386, intron 1 of 30) 18292 NM_031386 83560 Mm.440758 NM_031386 ENSMUSG00000010342 Tex14 C85585 testis expressed gene 14 0.006410 0.350318 -1.677327 chr12-189 chr12 106940401 106940557 + 50.8 NA Intergenic Intergenic 176895 NR_015512 71033 Mm.159404 NR_015512 4933406K04Rik 4930426M03Rik|4930485I22Rik|4933427G14Rik RIKEN cDNA 4933406K04 gene 0.006410 0.490446 -3.172994 chr11-219 chr11 108048499 108048655 + 50.8 NA intron (NM_011101, intron 2 of 16) intron (NM_011101, intron 2 of 16) 111401 NM_011101 18750 Mm.222178 NM_011101 ENSMUSG00000050965 Prkca AI875142|Pkca protein kinase C, alpha 0.032051 0.522293 3.486972 chr13-123 chr13 82048065 82048221 + 50.8 NA intron (NM_054053, intron 11 of 89) intron (NM_054053, intron 11 of 89) 62338 NM_054053 110789 Mm.288694 NM_054053 ENSMUSG00000069170 Gpr98 Frings|Mass1|Mgr1|VLGR1 G protein-coupled receptor 98 0.006410 0.464968 -5.016834 chr5-245 chr5 29582051 29582207 + 50.8 NA intron (NM_020295, intron 15 of 16) intron (NM_020295, intron 15 of 16) 53337 NM_021470 56874 Mm.477042 NM_021470 ENSMUSG00000029130 Rnf32 1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2|MGC107158 ring finger protein 32 0.032051 0.471338 2.163709 chr9-248 chr9 77536804 77536960 + 45.7 NA Intergenic Intergenic -3611 NM_010295 14629 Mm.89888 NM_010295 ENSMUSG00000032350 Gclc D9Wsu168e|GLCL-H|Ggcs-hs|Glclc glutamate-cysteine ligase, catalytic subunit 0.019231 0.509554 -5.342027 chr3-197 chr3 121595879 121596035 + 45.7 NA Intergenic Intergenic 39551 NR_036456 319738 Mm.65320 NR_036456 A730020M07Rik - RIKEN cDNA A730020M07 gene 0.000000 0.458599 -3.971728 chr8-191 chr8 118634834 118634990 + 45.7 NA Intergenic Intergenic -42041 NM_001025577 17132 Mm.439772 NM_001025577 ENSMUSG00000055435 Maf 2810401A20Rik|A230108G15Rik|AW047063|c-maf avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog 0.000000 0.484076 1.979728 chr2-235 chr2 49391942 49392098 + 45.7 NA Intergenic Intergenic -49302 NM_008449 16574 Mm.256342 NM_008449 ENSMUSG00000026764 Kif5c KINN|Khc|NKHC|NKHC2 kinesin family member 5C 0.025641 0.535032 1.589785 chr4-229-Dup1 chr4 63984423 63984428 + 45.7 NA Intergenic SYNREP_MM|Satellite|Satellite -477338 NM_011607 21923 Mm.454219 NM_011607 ENSMUSG00000028364 Tnc AI528729|C130033P17Rik|Hxb|MGC144208|MGC144209|TN|TN-C|Ten|cytotactin|tenascin-C tenascin C 0.000000 0.000000 -10000000000.000000 chr18-130 chr18 34238573 34238729 + 45.7 NA Intergenic Intergenic -106644 NM_013512 13824 Mm.3465 NM_013512 ENSMUSG00000024376 Epb4.1l4a Epb4.1l4|Epb41l4a|NBL4 erythrocyte protein band 4.1-like 4a 0.019231 0.515924 0.270436 chr15-123 chr15 27494733 27494889 + 45.7 NA intron (NM_020332, intron 2 of 11) intron (NM_020332, intron 2 of 11) 80607 NM_001013792 432940 Mm.309164 NM_001013792 ENSMUSG00000046034 Fam105b C79097 family with sequence similarity 105, member B 0.019231 0.445860 -5.656049 chr5-317 chr5 112511589 112511745 + 45.7 NA Intergenic Intergenic -5342 NM_009419 22022 Mm.250631 NM_009419 ENSMUSG00000029344 Tpst2 AI448750|D5Ucla3|grm|grt protein-tyrosine sulfotransferase 2 0.032051 0.630573 3.553354 chr4-255 chr4 147062920 147063076 + 45.7 NA Intergenic Intergenic 58531 NM_176848 230904 Mm.262287 NM_176848 ENSMUSG00000041556 Fbxo2 FBG1|FBX2|Fbs1|Fbs2|MGC54895|NFB42|Prpl4 F-box protein 2 0.038462 0.528662 -4.205738 chr16-118 chr16 22367477 22367633 + 45.7 NA Intergenic Intergenic -12729 NM_023794 104156 Mm.155708 NM_023794 ENSMUSG00000013089 Etv5 1110005E01Rik|8430401F14Rik|ERM ets variant gene 5 0.025641 0.452229 -3.567814 chr3-178 chr3 69370553 69370709 + 45.7 NA Intergenic Intergenic -34215 NM_178726 242083 Mm.40577 NM_178726 ENSMUSG00000027784 Ppm1l 3222401G13|5930404J21Rik|AI481720|AW045850|KIAA4175|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175 protein phosphatase 1 (formerly 2C)-like 0.032051 0.509554 -3.407388 chr11-263 chr11 93867170 93867326 + 45.7 NA intron (NM_001025428, intron 2 of 26) intron (NM_001025428, intron 2 of 26) 6954 NM_001025429 70834 Mm.260737 NM_001025428 ENSMUSG00000020859 Spag9 3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1 sperm associated antigen 9 0.012821 0.445860 -0.893384 chr19-63 chr19 29194452 29194608 + 45.7 NA intron (NM_021525, intron 6 of 8) intron (NM_021525, intron 6 of 8) -6745 NR_029778 724062 NR_029778 Mir101b Mirn101b|mir-101b microRNA 101b 0.019231 0.388535 1.080206 chr4-235 chr4 84887813 84887969 + 45.7 NA Intergenic Intergenic 211205 NM_019535 20404 Mm.143603 NM_019535 ENSMUSG00000028488 Sh3gl2 9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a SH3-domain GRB2-like 2 0.000000 0.420382 -2.152222 chr4-257 chr4 149648062 149648218 + 45.7 NA Intergenic Intergenic -50750 NM_133753 74155 Mm.318841 NM_133753 ENSMUSG00000028967 Errfi1 1300002F13Rik|AI788755|Mig-6|Mig6|RALT ERBB receptor feedback inhibitor 1 0.019231 0.535032 -2.190550 chr11-275 chr11 120499878 120500034 + 45.7 NA intron (NM_198223, intron 3 of 14) intron (NM_198223, intron 3 of 14) 7206 NM_001164224 68938 Mm.294020 NM_001164224 ENSMUSG00000025142 Aspscr1 1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG alveolar soft part sarcoma chromosome region, candidate 1 (human) 0.000000 0.490446 -1.067073 chr7-167 chr7 111159810 111159966 + 45.7 NA Intergenic Intergenic -246032 NR_015573 75479 Mm.460324 NR_015573 1700012D14Rik - RIKEN cDNA 1700012D14 gene 0.006410 0.426752 -5.191087 chr4-228 chr4 59908196 59908352 + 45.7 NA intron (NM_172468, intron 1 of 8) intron (NM_172468, intron 1 of 8) 8571 NM_172468 209131 Mm.259705 NM_172468 ENSMUSG00000028385 Snx30 4732481H14Rik|C030041J06Rik|MGC106086 sorting nexin family member 30 0.006410 0.503185 -5.926698 chr7-151 chr7 29709439 29709595 + 45.7 NA intron (NM_001167873, intron 6 of 9) intron (NM_001167873, intron 6 of 9) 16803 NM_001167872 243905 Mm.322432 NM_001033355 ENSMUSG00000074221 Zfp568 C80731|Gm1691|chato zinc finger protein 568 0.025641 0.509554 0.845771 chr10-199 chr10 122363404 122363560 + 45.7 NA Intergenic Intergenic 25302 NR_029527 387251 NR_029527 Mirlet7i Mirnlet7i|mmu-let-7i microRNA let7i 0.051282 0.515924 -4.754303 chr11-241 chr11 5154188 5154344 + 45.7 NA intron (NM_032396, intron 1 of 8) intron (NM_032396, intron 1 of 8) 7347 NM_032396 84035 Mm.209989 NM_032396 ENSMUSG00000020393 Kremen1 AV002070|Kremen|Krm1 kringle containing transmembrane protein 1 0.012821 0.464968 -3.995519 chr9-235 chr9 52590605 52590761 + 45.7 NA Intergenic Intergenic -148859 NM_178906 330941 Mm.335160 NM_177907 ENSMUSG00000078307 AI593442 E130102D23|MGC130101 expressed sequence AI593442 0.012821 0.394904 3.792842 chr3-179 chr3 69878745 69878901 + 45.7 NA Intergenic Intergenic 68840 NM_133787 97112 Mm.439485 NM_133787 ENSMUSG00000027787 Nmd3 C87860 NMD3 homolog (S. cerevisiae) 0.000000 0.401274 -2.013883 chr13-135 chr13 29497946 29498102 + 45.7 NA intron (NM_144536, intron 11 of 15) intron (NM_144536, intron 11 of 15) 365029 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.038462 0.394904 -9.216533 chr4-223 chr4 48735135 48735291 + 45.7 NA Intergenic Intergenic 50600 NM_026509 68016 Mm.133444 NM_026509 ENSMUSG00000028348 Murc 2310039E09Rik|MGC107637 muscle-related coiled-coil protein 0.012821 0.509554 -1.274466 chr5-284 chr5 9471409 9471565 + 45.7 NA intron (NM_172706, intron 21 of 21) intron (NM_172706, intron 21 of 21) 89778 NR_030537 100124492 NR_030537 Mir879 Mirn879|mmu-mir-879 microRNA 879 0.006410 0.439490 1.521865 chr13-149 chr13 76784759 76784915 + 45.7 NA Intergenic Intergenic -66125 NM_030174 78771 Mm.316249 NM_030174 ENSMUSG00000021596 Mctp1 2810465F10Rik multiple C2 domains, transmembrane 1 0.019231 0.477707 -1.438747 chr10-169 chr10 18391069 18391225 + 45.7 NA intron (NM_001033258, intron 2 of 33) intron (NM_001033258, intron 2 of 33) 42027 NM_001033258 215821 Mm.428163 NM_001033258 ENSMUSG00000019852 D10Bwg1379e 9630004D11|Arfgef3|B930094H20Rik|mKIAA1244 DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed 0.000000 0.445860 0.801250 chr6-172 chr6 81933303 81933459 + 45.7 NA Intergenic B3A|SINE|B2 -1774 NM_026490 56284 Mm.276293 NM_026490 ENSMUSG00000030045 Mrpl19 9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15 mitochondrial ribosomal protein L19 0.006410 0.535032 4.648285 chr10-177 chr10 59437855 59438011 + 45.7 NA intron (NM_026937, intron 6 of 10) intron (NM_026937, intron 6 of 10) -39464 NM_025514 52717 Mm.21793 NM_025514 ENSMUSG00000020107 Anapc16 2310005G07Rik|APC16|D10Ertd641e anaphase promoting complex subunit 16 0.019231 0.401274 4.908093 chr9-257 chr9 104866706 104866862 + 45.7 NA intron (NM_028719, intron 11 of 15) intron (NM_028719, intron 11 of 15) -44583 NM_053159 94062 Mm.29746 NM_053159 ENSMUSG00000032563 Mrpl3 2010320L16Rik|5930422H18Rik|AA407889 mitochondrial ribosomal protein L3 0.006410 0.477707 -3.677001 chr10-193 chr10 116400486 116400642 + 45.7 NA intron (NM_001007583, intron 4 of 9) intron (NM_001007583, intron 4 of 9) 10141 NM_001007583 382427 Mm.339322 NM_001007583 ENSMUSG00000020169 Best3 Vmd2l3|mBest4 bestrophin 3 0.012821 0.573248 -3.345218 chr5-296 chr5 53732454 53732610 + 45.7 NA Intergenic Intergenic -111494 NM_001080928 19664 Mm.209292 NM_001080927 ENSMUSG00000039191 Rbpj AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBPjk|Rbpsuh recombination signal binding protein for immunoglobulin kappa J region 0.012821 0.611465 3.966300 chr2-246 chr2 126967498 126967654 + 45.7 NA intron (NM_139308, intron 1 of 7) intron (NM_139308, intron 1 of 7) 5907 NM_139308 99138 Mm.41271 NM_139308 ENSMUSG00000027367 Stard7 AI852671|AL022671|AW544915|MGC27663 START domain containing 7 0.019231 0.382166 -4.917758 chr3-180 chr3 83951248 83951404 + 45.7 NA Intergenic RMER19B|LTR|ERVK -23791 NM_011905 24088 Mm.87596 NM_011905 ENSMUSG00000027995 Tlr2 Ly105 toll-like receptor 2 0.000000 0.464968 1.418855 chr17-154 chr17 6386979 6387135 + 45.7 NA intron (NM_001033178, intron 1 of 16) intron (NM_001033178, intron 1 of 16) 6645 NM_001033178 77106 Mm.463722 NM_001033178 ENSMUSG00000038141 Tmem181a 5930418K15Rik|C76977|Gpr178|MGC182481|Tmem181|mKIAA1423 transmembrane protein 181A 0.012821 0.375796 2.587432 chr1-348 chr1 159011513 159011669 + 45.7 NA intron (NM_177644, intron 8 of 17) intron (NM_177644, intron 8 of 17) -66269 NM_028540 73435 Mm.116705 NM_028540 ENSMUSG00000026592 1700057K13Rik MGC118391|MGC144290 RIKEN cDNA 1700057K13 gene 0.025641 0.452229 0.996904 chr3-190 chr3 101736264 101736420 + 45.7 NA Intergenic Intergenic -2624 NM_144900 11928 Mm.280103 NM_144900 ENSMUSG00000033161 Atp1a1 Atpa-1|BC010319|MGC38419 ATPase, Na+/K+ transporting, alpha 1 polypeptide 0.006410 0.439490 -1.128772 chr5-322 chr5 125098808 125098964 + 45.7 NA intron (NM_019536, intron 54 of 78) intron (NM_019536, intron 54 of 78) 52314 NM_144819 215707 Mm.389693 NM_144819 ENSMUSG00000037979 Ccdc92 AW050178|D5Bwg0834e|MGC38387 coiled-coil domain containing 92 0.000000 0.458599 -5.285040 chr14-67 chr14 23488113 23488269 + 45.7 NA Intergenic Intergenic 165046 NM_011297 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 MGC107549 ribosomal protein S24 0.012821 0.560510 -4.285807 chr13-136 chr13 29832846 29833002 + 45.7 NA intron (NM_144536, intron 4 of 15) intron (NM_144536, intron 4 of 15) 30129 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.006410 0.433121 -5.930390 chr9-242 chr9 66017271 66017427 + 45.7 NA intron (NM_010019, intron 2 of 11) intron (NM_010019, intron 2 of 11) 61118 NM_010019 13143 Mm.335252 NM_010019 ENSMUSG00000032380 Dapk2 - death-associated protein kinase 2 0.012821 0.579618 -5.369615 chr13-142 chr13 54412929 54413085 + 45.7 NA Intergenic Intergenic 32034 NM_009946 12890 Mm.268902 NM_009946 ENSMUSG00000025867 Cplx2 921-L|AI413745|AW492120 complexin 2 0.070513 0.522293 4.381131 chr1-338 chr1 92281851 92282007 + 45.7 NA Intergenic Intergenic -151899 NM_133805 108679 Mm.119177 NM_133805 ENSMUSG00000034432 Cops8 9430009J09Rik|AA408242|Csn8|Sgn8 COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana) 0.000000 0.426752 -0.649709 chr9-265 chr9 123440868 123441024 + 45.7 NA 3' UTR (NM_030692, exon 20 of 20) 3' UTR (NM_030692, exon 20 of 20) 40317 NM_011731 22599 Mm.41963 NM_011731 ENSMUSG00000025243 Slc6a20b AA986306|Sit1|Slc6a20|XT3|Xtrp3 solute carrier family 6 (neurotransmitter transporter), member 20B 0.006410 0.318471 0.055980 chr11-257 chr11 79858889 79859045 + 45.7 NA Intergenic Intergenic 38183 NM_018776 54394 Mm.272093 NM_018776 ENSMUSG00000017561 Crlf3 BB164954|Creme9|Crlf2|Cytor4 cytokine receptor-like factor 3 0.006410 0.464968 0.333490 chr5-316 chr5 108187855 108188011 + 45.7 NA intron (NM_026062, intron 1 of 4) intron (NM_026062, intron 1 of 4) 39446 NM_026062 67266 Mm.480596 NM_026062 ENSMUSG00000029270 Fam69a 2900024C23Rik|AI315274|MGC144843 family with sequence similarity 69, member A 0.000000 0.452229 -3.546310 chr13_random-2 chr13_random 31662 31818 + 45.7 NA promoter-TSS (NM_028245) promoter-TSS (NM_028245) -241 NM_028245 72465 Mm.139115 NM_028245 Zfp131 2610109I01Rik|AW558871|Znf131 zinc finger protein 131 NA NA chr12-207 chr12 73966505 73966661 + 45.7 NA Intergenic Intergenic -1033 NM_009189 20471 Mm.4645 NM_009189 ENSMUSG00000051367 Six1 BB138287 sine oculis-related homeobox 1 homolog (Drosophila) 0.006410 0.484076 -3.345862 chr13-140 chr13 51914962 51915118 + 45.7 NA Intergenic Intergenic 55870 NM_011817 23882 Mm.281298 NM_011817 ENSMUSG00000021453 Gadd45g AI327420|C86281|CR6|DDIT2|OIG37 growth arrest and DNA-damage-inducible 45 gamma 0.019231 0.522293 -1.256604 chr18-120 chr18 12188837 12188993 + 45.7 NA intron (NM_178801, intron 12 of 14) intron (NM_178801, intron 12 of 14) 76074 NM_178801 338363 Mm.271567 NM_178801 ENSMUSG00000049411 6030446N20Rik - RIKEN cDNA 6030446N20 gene 0.006410 0.452229 -2.490685 chr4-252 chr4 141370106 141370262 + 45.7 NA Intergenic Intergenic -13804 NM_145402 214359 Mm.27587 NM_145402 ENSMUSG00000040616 Tmem51 BC003277|FLJ10199 transmembrane protein 51 0.012821 0.535032 -2.235838 chr1-349 chr1 159079047 159079203 + 45.7 NA intron (NM_177644, intron 3 of 17) intron (NM_177644, intron 3 of 17) -133803 NM_028540 73435 Mm.116705 NM_028540 ENSMUSG00000026592 1700057K13Rik MGC118391|MGC144290 RIKEN cDNA 1700057K13 gene 0.000000 0.337580 0.997540 chr8-190 chr8 107623401 107623557 + 45.7 NA intron (NM_133960, intron 1 of 11) intron (NM_133960, intron 1 of 11) 348 NM_133960 102022 Mm.212983 NM_001190330 ENSMUSG00000055730 Ces6 9130231C15Rik|AI266984 carboxylesterase 6 0.012821 0.560510 3.031927 chr7-166 chr7 107285800 107285956 + 45.7 NA intron (NM_021889, intron 3 of 6) intron (NM_021889, intron 3 of 6) -72731 NM_172907 244198 Mm.77425 NM_172907 ENSMUSG00000051041 Olfml1 6720478C22|AV321997|BC047207|MGC56882|MVAL564|ONT2|mONT2 olfactomedin-like 1 0.019231 0.484076 -5.142085 chr3-170 chr3 40667504 40667660 + 45.7 NA Intergenic (CAGAA)n|Simple_repeat|Simple_repeat -64733 NM_175515 380614 Mm.432345 NM_175515 ENSMUSG00000060798 Intu 9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284 inturned planar cell polarity effector homolog (Drosophila) 0.000000 0.426752 -7.903979 chr9-230 chr9 35094190 35094346 + 45.7 NA Intergenic Intergenic 76717 NM_028040 71989 Mm.273515 NM_028040 ENSMUSG00000032044 Rpusd4 2410001E19Rik RNA pseudouridylate synthase domain containing 4 0.012821 0.439490 -5.409330 chr3-199 chr3 124396171 124396327 + 45.7 NA intron (NM_027939, intron 11 of 11) intron (NM_027939, intron 11 of 11) 21801 NM_027939 71824 Mm.331353 XM_131185 ENSMUSG00000027973 1700006A11Rik - RIKEN cDNA 1700006A11 gene 0.006410 0.439490 -12.088958 chr4-241 chr4 115673692 115673848 + 45.7 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 2467 NM_001099295 67323 Mm.45442 XM_001472749 ENSMUSG00000078593 1700042G07Rik - RIKEN cDNA 1700042G07 gene 0.006410 0.452229 -2.013882 chr11-262 chr11 93482239 93482395 + 45.7 NA Intergenic Intergenic 219539 NM_001013375 217109 Mm.379350 NM_001013375 ENSMUSG00000054079 Utp18 6230425C22Rik|6430513M13|MGC141453|MGC141454|Wdr50 UTP18, small subunit (SSU) processome component, homolog (yeast) 0.006410 0.503185 -3.151331 chr6-164 chr6 53547907 53548063 + 45.7 NA intron (NM_172728, intron 3 of 6) intron (NM_172728, intron 3 of 6) 45034 NM_172728 231991 Mm.321138 NM_172728 ENSMUSG00000053007 Creb5 Crebpa|D430026C09Rik cAMP responsive element binding protein 5 0.019231 0.496815 -0.381659 chr10-189 chr10 98175832 98175988 + 45.7 NA Intergenic Intergenic -168929 NM_026482 67972 Mm.471912 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 ATPase, Ca++ transporting, plasma membrane 1 0.006410 0.401274 -2.524134 chr16-123 chr16 33711747 33711903 + 45.7 NA Intergenic ID_B1|SINE|B4 -1958 NM_010739 17063 Mm.3177 NM_010739 ENSMUSG00000022824 Muc13 114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1 mucin 13, epithelial transmembrane 0.012821 0.509554 0.083568 chr12-194 chr12 10680648 10680804 + 45.7 NA Intergenic MTEb|LTR|MaLR 263939 NM_023697 105014 Mm.119343 NM_023697 ENSMUSG00000020621 Rdh14 3110030G19Rik|AW215439|PAN2 retinol dehydrogenase 14 (all-trans and 9-cis) 0.012821 0.458599 -2.591717 chr12-218 chr12 103803121 103803277 + 45.7 NA intron (NM_001177841, intron 4 of 6) intron (NM_001177841, intron 4 of 6) 13468 NM_001177841 68149 Mm.127378 NM_001177841 ENSMUSG00000021203 Otub2 2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2 OTU domain, ubiquitin aldehyde binding 2 0.006410 0.471338 -1.300632 chr3-171 chr3 50374573 50374729 + 45.7 NA Intergenic Intergenic 165157 NM_011990 26570 Mm.260988 NM_011990 ENSMUSG00000027737 Slc7a11 9930009M05Rik|AI451155|sut|xCT solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 0.006410 0.503185 -3.407889 chr1-353 chr1 167471047 167471203 + 45.7 NA promoter-TSS (NM_001001880) promoter-TSS (NM_001001880) 91 NM_001001880 68481 Mm.46438 NM_001001880 ENSMUSG00000026566 Mpzl1 1110007A10Rik|PZR myelin protein zero-like 1 0.134615 0.738854 -3.540226 chr8-186 chr8 90163962 90164118 + 45.7 NA Intergenic Intergenic 198657 NM_019626 12404 Mm.4880 NM_019626 ENSMUSG00000031654 Cbln1 AI323299 cerebellin 1 precursor protein 0.012821 0.496815 -5.705312 chr19-59 chr19 17004368 17004524 + 45.7 NA Intergenic Lx9|LINE|L1 -18690 NM_181348 353211 Mm.480716 NM_181348 Prune2 6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|KIAA0367|mKIAA0367 prune homolog 2 (Drosophila) 0.006410 0.426752 -0.815332 chr17-166 chr17 29962548 29962704 + 45.7 NA intron (NM_027060, intron 9 of 10) intron (NM_027060, intron 9 of 10) 160566 NR_030688 623169 Mm.440508 XM_892956 Gm6402 EG623169 ribosomal protein S17 pseudogene 0.006410 0.464968 -4.037670 chr8-183 chr8 82227193 82227349 + 45.7 NA Intergenic Intergenic -36243 NM_133823 109136 Mm.26510 NM_133823 ENSMUSG00000037022 Mmaa 2810018E08Rik|AI840684|MGC37960 methylmalonic aciduria (cobalamin deficiency) type A 0.019231 0.452229 -1.651486 chr6-169 chr6 64457944 64458100 + 45.7 NA intron (NM_008167, intron 13 of 15) intron (NM_008167, intron 13 of 15) -200701 NM_007500 11921 Mm.57229 NM_007500 ENSMUSG00000073043 Atoh1 Hath1|MATH-1|Math1|bHLHa14 atonal homolog 1 (Drosophila) 0.000000 0.350318 4.872751 chr10-200 chr10 126387646 126387802 + 45.7 NA intron (NM_001113470, intron 1 of 7) intron (NM_001113470, intron 1 of 7) 6059 NM_001113470 52468 Mm.29490 NM_001113470 ENSMUSG00000078429 Ctdsp2 AI586070|D10Ertd73e|MGC38258|OS-4|OS4|SCP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 0.012821 0.554140 -4.947597 chr12-226 chr12 112814544 112814700 + 45.7 NA Intergenic RMER15|LTR|ERVL 56384 NR_036459 319590 Mm.255309 NM_176956 ENSMUSG00000047828 A730018C14Rik - RIKEN cDNA A730018C14 gene 0.006410 0.401274 -4.617528 chr2-254 chr2 146999603 146999759 + 45.7 NA 5' UTR (NR_030769, exon 5 of 6) 5' UTR (NR_030769, exon 5 of 6) -56753 NM_008780 18503 Mm.315502 NM_008780 ENSMUSG00000037034 Pax1 MGC175950|Pax-1|hbs|hunchback|un|undulated|wt paired box gene 1 0.000000 0.433121 4.082977 chr14-70 chr14 33717010 33717166 + 45.7 NA intron (NM_008166, intron 2 of 15) intron (NM_008166, intron 2 of 15) -6612 NR_029774 723847 NR_029774 Mir346 Mirn346|mmu-mir-346 microRNA 346 0.006410 0.547771 -0.311280 chr4-233 chr4 82025060 82025216 + 45.7 NA Intergenic Intergenic -48599 NM_008687 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.012821 0.407643 0.251150 chr11-265 chr11 93961146 93961302 + 45.7 NA Intergenic Intergenic -66319 NM_009427 22057 Mm.259673 NM_009427 ENSMUSG00000037573 Tob1 Tob|Trob transducer of ErbB-2.1 0.019231 0.420382 -3.579220 chr5-307 chr5 79271235 79271391 + 45.7 NA Intergenic Intergenic -684790 NR_027806 231332 Mm.373616 NR_027806 Pea15b - phosphoprotein enriched in astrocytes 15B 0.006410 0.420382 1.163835 chr9-225 chr9 22625784 22625940 + 45.7 NA intron (NM_178415, intron 21 of 22) intron (NM_178415, intron 21 of 22) -347615 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator 0.000000 0.426752 -4.301826 chr9-233 chr9 50167138 50167294 + 45.7 NA Intergenic Intergenic -79538 NM_029639 76509 Mm.29959 NM_029639 ENSMUSG00000032068 1600029D21Rik 0610037B23Rik|AA407923|AU043048|PLET1 RIKEN cDNA 1600029D21 gene 0.019231 0.503185 -3.285413 chr11-254 chr11 74741808 74741964 + 45.7 NA promoter-TSS (NM_001002764) promoter-TSS (NM_001002764) 107 NM_013761 27364 Mm.412219 NM_001163311 ENSMUSG00000001323 Srr Srs serine racemase 0.121795 0.668790 0.243015 chr12-217 chr12 102854663 102854819 + 45.7 NA Intergenic Merlin1_HS|DNA|Merlin -13994 NM_011175 19141 Mm.17185 NM_011175 ENSMUSG00000021190 Lgmn AEP|AI746452|AU022324|Prsc1 legumain 0.032051 0.503185 -5.636681 chr11-258 chr11 81510960 81511116 + 45.7 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) -121304 NM_001033765 237880 Mm.435528 NM_001033765 1700071K01Rik - RIKEN cDNA 1700071K01 gene 0.000000 0.490446 -5.336637 chr4-242 chr4 119560998 119561154 + 45.7 NA intron (NM_010657, intron 2 of 8) intron (NM_010657, intron 2 of 8) -97982 NM_007902 13615 Mm.284855 NM_007902 ENSMUSG00000028635 Edn2 VIC endothelin 2 0.012821 0.541401 2.135292 chr10-184 chr10 82372919 82373075 + 45.7 NA Intergenic Intergenic -42298 NM_021439 58250 Mm.360747 NM_021439 ENSMUSG00000034612 Chst11 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s carbohydrate sulfotransferase 11 0.000000 0.445860 -1.116790 chr13-151 chr13 98876955 98877111 + 45.7 NA Intergenic Intergenic 429289 NM_012026 110596 Mm.252718 NM_012026 ENSMUSG00000021662 Rgnef 9230110L08Rik|AI323540|D13Bwg1089e|RIP2|RhoGEF|Rhoip2|p190RhoGEF Rho-guanine nucleotide exchange factor 0.006410 0.515924 -4.728186 chr4-245 chr4 130161933 130162089 + 45.7 NA Intergenic Intergenic -23398 NM_010686 16792 Mm.271868 NM_010686 ENSMUSG00000028581 Laptm5 E3 lysosomal-associated protein transmembrane 5 0.012821 0.630573 -1.495782 chr7-156 chr7 55600905 55601061 + 45.7 NA Intergenic Intergenic -35213 NM_178706 233274 Mm.481804 NM_178706 ENSMUSG00000051504 Siglech 6430529G09Rik|MGC106898|Siglec-H sialic acid binding Ig-like lectin H 0.000000 0.522293 -1.482968 chr3-207 chr3 149211607 149211763 + 45.7 NA Intergenic Intergenic -319664 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.012821 0.407643 -1.529246 chr7-180 chr7 141633901 141634057 + 45.7 NA Intergenic Intergenic -14482 NM_028801 74180 Mm.200752 NM_028801 ENSMUSG00000066108 Muc5b 2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b mucin 5, subtype B, tracheobronchial 0.025641 0.515924 0.186807 chr17-172 chr17 46792255 46792411 + 45.7 NA intron (NM_001097623, intron 14 of 18) intron (NM_001097623, intron 14 of 18) -39744 NM_001146212 64657 Mm.216250 NM_001146211 ENSMUSG00000034729 Mrps10 1110038B19Rik|AW743084|Rpms10 mitochondrial ribosomal protein S10 0.044872 0.515924 -2.512344 chr9-264 chr9 121857553 121857709 + 45.7 NA Intergenic Intergenic -12907 NM_153540 215494 Mm.402151 NM_153540 ENSMUSG00000066235 C85492 Ago61|MGC31712 expressed sequence C85492 0.006410 0.535032 -1.318406 chr9-253 chr9 95655168 95655324 + 45.7 NA promoter-TSS (NM_001033210) promoter-TSS (NM_001033210) -615 NM_001033210 102502 Mm.11869 NM_001033210 ENSMUSG00000049493 Pls1 AI427122 plastin 1 (I-isoform) 0.012821 0.509554 -4.785292 chr18-128 chr18 33258612 33258768 + 45.7 NA intron (NM_009793, intron 5 of 10) intron (NM_009793, intron 5 of 10) 79937 NM_133774 170459 Mm.393277 NM_133774 ENSMUSG00000024378 Stard4 4632419C16Rik|9030213J02Rik|AA517649|AW324468 StAR-related lipid transfer (START) domain containing 4 0.006410 0.445860 -2.354758 chr2-251 chr2 138628756 138628912 + 45.7 NA Intergenic MIRm|SINE|MIR 117465 NR_035477 100316816 NR_035477 Mir1952 mmu-mir-1952 microRNA mir-1952 0.012821 0.420382 2.057863 chr9-262 chr9 121335153 121335309 + 45.7 NA Intergenic Intergenic 9156 NM_031161 12424 Mm.2619 NM_031161 ENSMUSG00000032532 Cck - cholecystokinin 0.012821 0.484076 -4.535810 chr18-121 chr18 21786761 21786917 + 45.7 NA intron (NM_001081403, intron 1 of 7) intron (NM_001081403, intron 1 of 7) 8539 NM_001081403 225266 Mm.436836 NM_001081403 ENSMUSG00000042514 Klhl14 6330403N15Rik|AI785250|printor kelch-like 14 (Drosophila) 0.000000 0.407643 -1.298702 chr5-339 chr5 149494890 149495046 + 45.7 NA promoter-TSS (NM_001115150) promoter-TSS (NM_001115150) 60 NM_001115149 231915 Mm.29402 NM_001013378 ENSMUSG00000041264 Uspl1 D030048C09|E430026A01Rik ubiquitin specific peptidase like 1 0.064103 0.681529 -3.723377 chr3-183 chr3 85640711 85640867 + 45.7 NA Intergenic Intergenic -19266 NM_144896 229487 Mm.52275 NM_144896 ENSMUSG00000028085 Pet112l 9430026F02Rik|MGC11629 PET112-like (yeast) 0.006410 0.554140 1.073377 chr5-337 chr5 146630724 146630880 + 45.7 NA Intergenic L1MA8|LINE|L1 -58437 NM_145155 245880 Mm.472750 NM_145155 ENSMUSG00000029636 Wasf3 Scar3|Wave3 WAS protein family, member 3 0.006410 0.490446 -3.444320 chr3-200 chr3 129642446 129642602 + 45.7 NA Intergenic RLTR25B|LTR|ERVK 104820 NM_010113 13645 Mm.480769 NM_010113 ENSMUSG00000028017 Egf AI790464 epidermal growth factor 0.000000 0.522293 -1.698982 chr2-229 chr2 17627926 17628082 + 45.7 NA intron (NM_028757, intron 2 of 6) intron (NM_028757, intron 2 of 6) 20818 NM_028757 74103 Mm.440498 NM_028757 ENSMUSG00000053702 Nebl 1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl|MGC118387 nebulette 0.000000 0.401274 0.157912 chr19-53 chr19 3709059 3709215 + 45.7 NA intron (NM_028077, intron 1 of 3) intron (NM_028077, intron 1 of 3) 805 NM_028077 72056 Mm.23780 NM_028077 ENSMUSG00000035372 1810055G02Rik AI256204 RIKEN cDNA 1810055G02 gene 0.025641 0.433121 -1.259827 chr11-273 chr11 107026845 107027001 + 45.7 NA 3' UTR (NM_145823, exon 10 of 10) 3' UTR (NM_145823, exon 10 of 10) -21452 NM_001161329 68979 Mm.294617 NM_001161329 ENSMUSG00000018433 Nol11 1500002M01Rik|AU015220|AU019874 nucleolar protein 11 0.019231 0.490446 -6.746839 chr13-138 chr13 34262252 34262408 + 45.7 NA intron (NM_001033167, intron 3 of 10) intron (NM_001033167, intron 3 of 10) 90317 NM_001033167 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik solute carrier family 22, member 23 0.006410 0.503185 -1.733378 chr11-247 chr11 42991560 42991716 + 45.7 NA Intergenic Intergenic -1661 NM_176999 319767 Mm.252339 NM_176999 ENSMUSG00000055415 Atp10b 5930426O13Rik|9030605H24Rik ATPase, class V, type 10B 0.019231 0.452229 -2.745062 chr13-144 chr13 57718461 57718617 + 45.7 NA intron (NM_001166464, intron 2 of 10) intron (NM_001166464, intron 2 of 10) 199416 NM_009262 20745 Mm.379020 NM_001166463 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 0.025641 0.560510 -4.783823 chr4-234 chr4 84165877 84166033 + 45.7 NA Intergenic Intergenic -19638 NM_172870 242509 Mm.190774 NM_172870 ENSMUSG00000028487 Bnc2 5031434M05Rik|8430420F16Rik|MGC124423|MGC124424 basonuclin 2 0.006410 0.382166 0.561021 chr2-264 chr2 173331886 173332042 + 45.7 NA intron (NM_024436, intron 3 of 6) intron (NM_024436, intron 3 of 6) 29181 NM_024436 19334 Mm.275304 NM_024436 ENSMUSG00000027519 Rab22a 3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22 RAB22A, member RAS oncogene family 0.019231 0.445860 -3.377869 chr17-165 chr17 29727441 29727597 + 45.7 NA Intergenic Intergenic -4579 NM_148926 21769 Mm.220972 NM_148926 ENSMUSG00000044477 Zfand3 AW539211|MGC103362|MGC118625|TEG-27|Tex27 zinc finger, AN1-type domain 3 0.000000 0.426752 -3.564353 chr10-170 chr10 21433916 21434072 + 45.7 NA Intergenic Intergenic -137605 NM_001161845 20393 Mm.28405 NM_001161845 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 0.006410 0.452229 -3.607271 chr8-182 chr8 81404926 81405082 + 45.7 NA promoter-TSS (NM_029736) promoter-TSS (NM_029736) -4 NM_009033 19656 Mm.24718 NM_009033 ENSMUSG00000037070 Rbmxrt Hnrpg|MGC102184|Rbmx RNA binding motif protein, X chromosome retrogene 0.179487 0.694268 -8.388033 chr5-329 chr5 139103612 139103768 + 45.7 NA Intergenic Intergenic 94968 NM_030565 80752 Mm.320355 NM_030565 ENSMUSG00000025854 Fam20c C76981|DMP-4|DMP4|KIAA4081|MGC7673|mKIAA4081 family with sequence similarity 20, member C 0.012821 0.541401 -1.570842 chr14-73 chr14 74627882 74628038 + 45.7 NA Intergenic B3|SINE|B2 -45507 NR_002218 497210 Mm.297482 NR_002218 Tpt1p - tumor protein, translationally-controlled 1 pseudogene 0.000000 0.426752 -5.602758 chr11-276 chr11 120748887 120749043 + 45.7 NA promoter-TSS (NM_027745) promoter-TSS (NM_027745) -3 NM_027745 71276 Mm.275751 NM_027745 ENSMUSG00000048445 Ccdc57 4933434G05Rik coiled-coil domain containing 57 0.096154 0.624204 -6.164579 chr16-135 chr16 95472773 95472929 + 45.7 NA intron (NM_133659, intron 10 of 10) intron (NM_133659, intron 10 of 10) 106403 NM_001039056 16516 Mm.272239 NM_001039056 ENSMUSG00000062609 Kcnj15 4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2 potassium inwardly-rectifying channel, subfamily J, member 15 0.025641 0.439490 -1.935439 chr1-354 chr1 171589055 171589211 + 45.7 NA Intergenic Intergenic -4816 NM_009062 19736 Mm.41642 NM_009062 ENSMUSG00000038530 Rgs4 AA004315|AA597169|ESTM48|ESTM50 regulator of G-protein signaling 4 0.012821 0.394904 -2.261322 chr10-195 chr10 118390069 118390225 + 45.7 NA Intergenic Intergenic -118251 NM_001014390 69181 Mm.458174 NM_001014390 ENSMUSG00000028630 Dyrk2 1810038L18Rik dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 0.032051 0.458599 -3.595239 chr3-182 chr3 85296008 85296164 + 45.7 NA Intergenic Intergenic -244579 NM_001040461 654362 Mm.466598 NM_001040461 Dear1 Dear dual endothelin 1/angiotensin II receptor 1 homolog (rat) 0.025641 0.566879 -1.059678 chr2-236 chr2 71448311 71448467 + 45.7 NA Intergenic MIRb|SINE|MIR -71866 NM_201366 381371 Mm.330284 NM_201366 ENSMUSG00000064263 Gm1631 - predicted gene 1631 0.044872 0.496815 5.520402 chr10-190 chr10 102192240 102192396 + 45.7 NA Intergenic Lx8|LINE|L1 250409 NM_146240 237504 Mm.282672 NM_146240 ENSMUSG00000044921 Rassf9 AW322107|MGC41694|Pamci Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 0.006410 0.471338 -4.839192 chr19-56 chr19 5846544 5846700 + 45.7 NA Intergenic Intergenic -1144 NR_003513 66961 Mm.472837 NR_003513 Neat1 2310043N10Rik|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) 0.019231 0.541401 -5.849601 chr7-171 chr7 118365573 118365729 + 45.7 NA intron (NM_172476, intron 1 of 15) intron (NM_172476, intron 1 of 15) 10184 NM_172476 209760 Mm.69380 NM_172476 ENSMUSG00000042246 Tmc7 1700030H01Rik|C230064B05|C630024K23Rik transmembrane channel-like gene family 7 0.025641 0.566879 3.267203 chr5-331 chr5 140863883 140864039 + 45.7 NA intron (NM_008494, intron 1 of 7) intron (NM_008494, intron 1 of 7) 4147 NM_008494 16848 Mm.12834 NM_008494 ENSMUSG00000029570 Lfng AW061165 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 0.038462 0.643312 -3.740066 chr2-243 chr2 119298447 119298603 + 45.7 NA Intergenic Intergenic -11213 NM_133851 108907 Mm.439488 NM_001042652 ENSMUSG00000027306 Nusap1 2610201A12Rik|AI481307|ANKT|AW547774|BB165529|BM037|LNP|NuSAP|Q0310|SAPL nucleolar and spindle associated protein 1 0.000000 0.394904 -2.973819 chr3-167 chr3 25870658 25870814 + 45.7 NA intron (NM_138666, intron 5 of 7) intron (NM_138666, intron 5 of 7) 473644 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.000000 0.464968 -6.031283 chr9-226 chr9 22902201 22902357 + 45.7 NA Intergenic Intergenic -71198 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator 0.025641 0.426752 7.137164 chr1-323 chr1 60708352 60708508 + 45.7 NA intron (NM_007642, intron 2 of 3) intron (NM_007642, intron 2 of 3) 17497 NM_007642 12487 Mm.255003 NM_007642 ENSMUSG00000026012 Cd28 - CD28 antigen 0.006410 0.312102 6.725507 chr12-216 chr12 102672682 102672838 + 45.7 NA Intergenic Intergenic -11363 NM_177620 217835 Mm.24145 NM_001161365 ENSMUSG00000044456 Rin3 6430500K07|C86933 Ras and Rab interactor 3 0.006410 0.547771 -5.992308 chr9-240 chr9 61594001 61594157 + 45.7 NA Intergenic Intergenic 118437 NM_018853 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik|MGC103133 ribosomal protein, large, P1 0.012821 0.477707 -0.443934 chr16-130 chr16 85657851 85658007 + 45.7 NA Intergenic Intergenic 34382 NM_009621 11504 Mm.1421 NM_009621 ENSMUSG00000022893 Adamts1 ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 0.019231 0.414013 -1.590796 chr7-157 chr7 65163181 65163337 + 45.7 NA Intergenic Intergenic 86935 NM_001163574 21872 Mm.4342 NM_001163574 ENSMUSG00000030516 Tjp1 ZO1 tight junction protein 1 0.012821 0.445860 -1.226490 chr6-166 chr6 56831571 56831727 + 45.7 NA intron (NM_026004, intron 1 of 8) intron (NM_026004, intron 1 of 8) 21861 NM_026004 107569 Mm.158936 NM_026004 ENSMUSG00000029780 Nt5c3 1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36 5'-nucleotidase, cytosolic III 0.006410 0.477707 -4.278932 chr1-329 chr1 72467734 72467890 + 45.7 NA intron (NM_001045533, intron 1 of 3) intron (NM_001045533, intron 1 of 3) 1960 NM_001045533 381270 Mm.337023 NM_001045533 ENSMUSG00000039372 March4 BC056494|KIAA1399|mKIAA1399 membrane-associated ring finger (C3HC4) 4 0.019231 0.541401 -6.584338 chr5-336 chr5 144897502 144897658 + 45.7 NA Intergenic MIRm|SINE|MIR 98167 NM_016789 53324 Mm.10099 NM_016789 ENSMUSG00000059991 Nptx2 Narp|np2 neuronal pentraxin 2 0.006410 0.426752 3.158714 chr18-135 chr18 61921459 61921615 + 45.7 NA Intergenic Intergenic -9506 NM_178928 106877 Mm.26632 NM_178928 ENSMUSG00000033032 Afap1l1 AI173486 actin filament associated protein 1-like 1 0.006410 0.484076 -3.203599 chr15-129 chr15 72436177 72436333 + 45.7 NA intron (NM_029640, intron 20 of 21) intron (NM_029640, intron 20 of 21) -62720 NM_001033876 223604 Mm.386856 NM_001033876 ENSMUSG00000036760 Kcnk9 Task3 potassium channel, subfamily K, member 9 0.000000 0.477707 3.363737 chr5-338 chr5 148695153 148695309 + 45.7 NA intron (NM_007513, intron 1 of 12) intron (NM_007513, intron 1 of 12) 15022 NM_007513 11987 Mm.275489 NM_007513 ENSMUSG00000041313 Slc7a1 4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 0.006410 0.547771 4.775868 chr10-183 chr10 80954756 80954912 + 45.7 NA Intergenic Intergenic -6659 NM_010301 14672 Mm.471081 NM_010301 ENSMUSG00000034781 Gna11 Dsk7|E430025L19 guanine nucleotide binding protein, alpha 11 0.019231 0.566879 -1.834345 chr17-167 chr17 31060890 31061046 + 45.7 NA intron (NM_153062, intron 10 of 19) intron (NM_153062, intron 10 of 19) 36776 NM_153062 224674 Mm.311395 NM_153062 ENSMUSG00000024036 Slc37a1 G3PP|MGC28167 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 0.000000 0.445860 -5.425862 chr18-122 chr18 22641714 22641870 + 45.7 NA intron (NM_001167777, intron 9 of 12) intron (NM_001167777, intron 9 of 12) 153694 NM_001167777 211961 Mm.392310 XM_001474902 ENSMUSG00000045215 Asxl3 C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945 additional sex combs like 3 (Drosophila) 0.006410 0.388535 -5.848334 chr5-314 chr5 104034101 104034257 + 45.7 NA intron (NM_001080798, intron 3 of 19) intron (NM_001080798, intron 3 of 19) 39305 NM_001080798 17355 Mm.6949 NM_001080798 ENSMUSG00000029313 Aff1 9630032B01Rik|AW319193|Af4|Mllt2h|Rob AF4/FMR2 family, member 1 0.025641 0.414013 -3.701925 chr1-336 chr1 82308270 82308426 + 45.7 NA intron (NM_001122685, intron 6 of 6) intron (NM_001122685, intron 6 of 6) 90276 NM_001122685 76867 Mm.226994 NM_001122685 ENSMUSG00000026142 Rhbdd1 4930418P06Rik|MGC7809 rhomboid domain containing 1 0.000000 0.471338 -9.758658 chr12-200 chr12 36458083 36458239 + 45.7 NA intron (NM_207531, intron 6 of 7) intron (NM_207531, intron 6 of 7) 22275 NM_207531 403205 Mm.190508 NM_207531 ENSMUSG00000036231 Agr3 BCMP11|E030025L21Rik|Gm888 anterior gradient homolog 3 (Xenopus laevis) 0.012821 0.394904 1.724436 chr9-261 chr9 118972209 118972365 + 45.7 NA intron (NM_177117, intron 10 of 36) intron (NM_177117, intron 10 of 36) 21112 NM_177117 320256 Mm.110648 XM_486268 ENSMUSG00000038060 Dlec1 D630005C06Rik deleted in lung and esophageal cancer 1 0.019231 0.503185 -5.342815 chr6-163 chr6 52755283 52755439 + 45.7 NA intron (NM_001168277, intron 2 of 4) intron (NM_001168277, intron 2 of 4) 83837 NM_001168277 231986 Mm.386865 NM_001168277 ENSMUSG00000063568 Jazf1 AI591476|C820002C15|Jaz1|Tip27 JAZF zinc finger 1 0.006410 0.503185 -5.652190 chr5-301 chr5 73136990 73137146 + 45.7 NA intron (NM_001113461, intron 1 of 17) intron (NM_001113461, intron 1 of 17) 10515 NM_001113461 21682 Mm.319581 NM_001113460 ENSMUSG00000029217 Tec - tec protein tyrosine kinase 0.006410 0.528662 -8.010982 chr7-148 chr7 24906532 24906688 + 45.7 NA Intergenic Intergenic 22009 NM_207677 67379 Mm.280594 NM_207677 ENSMUSG00000054499 Dedd2 2410050E11Rik|FLAME-3 death effector domain-containing DNA binding protein 2 0.012821 0.515924 -2.263184 chr7-168 chr7 114102405 114102561 + 45.7 NA Intergenic Intergenic -35186 NM_011965 26440 Mm.121265 NM_011965 ENSMUSG00000030751 Psma1 C2|alpha-type proteasome (prosome, macropain) subunit, alpha type 1 0.006410 0.484076 -3.564353 chr13-139 chr13 46630729 46630885 + 45.7 NA intron (NM_026056, intron 7 of 12) intron (NM_026056, intron 7 of 12) -49686 NM_001033192 97863 Mm.275934 NM_001033192 ENSMUSG00000069237 C78339 - expressed sequence C78339 0.038462 0.598726 -0.804897 chr16-125 chr16 45369870 45370026 + 45.7 NA intron (NM_001005854, intron 1 of 4) intron (NM_001005854, intron 1 of 4) -41563 NM_010818 17470 Mm.245851 NM_010818 ENSMUSG00000022661 Cd200 Mox2|OX2 CD200 antigen 0.000000 0.407643 -7.408010 chr6-185 chr6 97512045 97512201 + 45.7 NA intron (NM_145148, intron 1 of 23) intron (NM_145148, intron 1 of 23) 70997 NM_145148 232288 Mm.27789 NM_145148 ENSMUSG00000030064 Frmd4b 6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013 FERM domain containing 4B 0.006410 0.426752 1.252560 chr5-286 chr5 15749854 15750010 + 45.7 NA intron (NM_001110844, intron 6 of 38) intron (NM_001110844, intron 6 of 38) 303418 NM_001110846 12293 Mm.159842 NM_001110843 ENSMUSG00000040118 Cacna2d1 Cacna2|Cchl2a|MGC141430 calcium channel, voltage-dependent, alpha2/delta subunit 1 0.025641 0.566879 0.607942 chr2-265 chr2 174308402 174308558 + 45.7 NA intron (NM_001099328, intron 3 of 4) intron (NM_001099328, intron 3 of 4) 22008 NM_001099328 100043757 Mm.48711 XM_001480903 ENSMUSG00000050600 Zfp831 ENSMUSG00000050600|OTTMUSG00000017459|Rp23-45p4.1 zinc finger protein 831 0.019231 0.522293 -5.021083 chr8-184 chr8 85365487 85365643 + 45.7 NA Intergenic Charlie1|DNA|MER1_type -67273 NM_008357 16168 Mm.4392 NM_008357 ENSMUSG00000031712 Il15 AI503618 interleukin 15 0.000000 0.401274 0.945118 chr10-178 chr10 70733973 70734129 + 45.7 NA intron (NM_134007, intron 1 of 2) intron (NM_134007, intron 1 of 2) 6098 NM_134007 52637 Mm.254114 NM_134007 ENSMUSG00000037710 Cisd1 AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET CDGSH iron sulfur domain 1 0.012821 0.515924 -2.788642 chr11-259 chr11 85490181 85490337 + 45.7 NA intron (NM_001166642, intron 23 of 24) intron (NM_001166642, intron 23 of 24) -158550 NM_009324 21385 Mm.287052 NM_009324 ENSMUSG00000000093 Tbx2 - T-box 2 0.000000 0.617834 -3.964445 chr17-155 chr17 8255207 8255363 + 45.7 NA intron (NM_001161832, intron 7 of 10) intron (NM_001161832, intron 7 of 10) -17311 NM_009309 20997 Mm.913 NM_009309 ENSMUSG00000062327 T Bra|D17Mit170|Low|Lr|T1|Tl2|Tl3|cou|me75 brachyury 0.032051 0.605096 -5.172400 chr13-155 chr13 105474841 105474997 + 45.7 NA intron (NM_001081020, intron 9 of 24) intron (NM_001081020, intron 9 of 24) 66665 NM_001081020 108154 Mm.208125 NM_001081020 ENSMUSG00000046169 Adamts6 5031426K13|A930019D11Rik|ADAM-TS6 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6 0.019231 0.490446 -5.696009 chr9-234 chr9 50174146 50174302 + 45.7 NA Intergenic Intergenic -72530 NM_029639 76509 Mm.29959 NM_029639 ENSMUSG00000032068 1600029D21Rik 0610037B23Rik|AA407923|AU043048|PLET1 RIKEN cDNA 1600029D21 gene 0.051282 0.541401 -2.807524 chr5-297 chr5 53878593 53878749 + 45.7 NA promoter-TSS (NM_001080927) promoter-TSS (NM_001080927) -150 NM_001080927 19664 Mm.209292 NM_001080927 ENSMUSG00000039191 Rbpj AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBPjk|Rbpsuh recombination signal binding protein for immunoglobulin kappa J region 0.102564 0.636943 -5.077075 chr1-328 chr1 72177993 72178149 + 45.7 NA Intergenic Intergenic -32556 NM_001005423 381269 Mm.422636 NM_001005423 ENSMUSG00000039395 Mreg Gm974|MGC92980|Wdt2|dsu melanoregulin 0.006410 0.382166 0.656137 chr8-181 chr8 75985273 75985429 + 45.7 NA intron (NM_010687, intron 5 of 14) intron (NM_010687, intron 5 of 14) 263277 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large BPFD#36|Gyltl1a|Mbp-1|Mbp1|enr|fg|froggy|mKIAA0609|myd like-glycosyltransferase 0.006410 0.445860 -1.189985 chr7-181 chr7 143217503 143217659 + 45.7 NA intron (NM_008434, intron 15 of 15) intron (NM_008434, intron 15 of 15) 52859 NM_009876 12577 Mm.168789 NM_001161624 ENSMUSG00000037664 Cdkn1c AL024410|CDKI|Kip2|p57(kip2)|p57Kip2 cyclin-dependent kinase inhibitor 1C (P57) 0.012821 0.515924 1.411907 chr1-344 chr1 130435832 130435988 + 45.7 NA Intergenic Intergenic -16065 NM_009911 12767 Mm.1401 XM_001478244 ENSMUSG00000045382 Cxcr4 CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r chemokine (C-X-C motif) receptor 4 0.019231 0.490446 -1.309432 chr14-74 chr14 98570280 98570436 + 45.7 NA Intergenic Intergenic 388534 NM_009769 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF Kruppel-like factor 5 0.012821 0.445860 -2.927620 chr10-198 chr10 120835141 120835297 + 45.7 NA intron (NM_138956, intron 1 of 4) intron (NM_138956, intron 1 of 4) 44091 NM_138956 192678 Mm.41265 NM_138956 ENSMUSG00000025795 Rassf3 AW212023|AW322379 Ras association (RalGDS/AF-6) domain family member 3 0.012821 0.420382 -9.083406 chr5-288 chr5 22534196 22534352 + 45.7 NA intron (NM_029990, intron 1 of 2) intron (NM_029990, intron 1 of 2) -275566 NR_027362 330052 Mm.468581 NR_027362 A930003O13Rik - RIKEN cDNA A930003O13 gene 0.000000 0.471338 2.641073 chr12-220 chr12 104403793 104403949 + 45.7 NA intron (NM_027997, intron 2 of 4) intron (NM_027997, intron 2 of 4) 10831 NM_027997 71907 Mm.326723 NM_027997 ENSMUSG00000058260 Serpina9 2310014L03Rik|AW049635|Centerin serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 0.019231 0.452229 -2.084324 chr10-172 chr10 44437229 44437385 + 45.7 NA Intergenic Intergenic -290205 NM_007548 12142 Mm.4800 NM_007548 ENSMUSG00000038151 Prdm1 Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1 PR domain containing 1, with ZNF domain 0.038462 0.426752 -7.157216 chr6-157 chr6 5753320 5753476 + 45.7 NA intron (NM_001191026, intron 6 of 16) intron (NM_001191026, intron 6 of 16) 77760 NM_001191026 13426 Mm.20893 NM_001191023 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 0.025641 0.535032 -3.316343 chr19-55 chr19 5845487 5845605 + 45.7 NA promoter-TSS (NR_003513) promoter-TSS (NR_003513) -68 NR_003513 66961 Mm.472837 NR_003513 Neat1 2310043N10Rik|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) 0.050847 0.470588 0.393433 chr6-188 chr6 115368099 115368255 + 45.7 NA intron (NM_001127330, intron 2 of 7) intron (NM_001127330, intron 2 of 7) -19507 NM_011146 19016 Mm.3020 NM_001127330 ENSMUSG00000000440 Pparg Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2 peroxisome proliferator activated receptor gamma 0.000000 0.458599 1.166787 chr6-182 chr6 94887371 94887527 + 45.7 NA Intergenic Intergenic -195919 NM_001102670 243574 Mm.333275 NM_001008785 ENSMUSG00000030031 Kbtbd8 AU040152|MGC91215|SSEC-51|SSEC51|Takrp|mKIAA1842 kelch repeat and BTB (POZ) domain containing 8 0.000000 0.375796 3.007190 chr15-125 chr15 51944848 51945004 + 45.7 NA Intergenic Intergenic 74746 NM_175503 239435 Mm.24204 NM_175503 ENSMUSG00000068522 Aard A5D3|AV328152|MGC107188 alanine and arginine rich domain containing protein 0.000000 0.382166 -1.259827 chr16-112 chr16 9255153 9255309 + 45.7 NA Intergenic RMER15|LTR|ERVL 509262 NM_001081400 69053 Mm.479940 XM_001480138 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|R74903 RIKEN cDNA 1810013L24 gene 0.000000 0.445860 0.652260 chr12-223 chr12 107984088 107984244 + 45.7 NA Intergenic Intergenic 467055 NM_001079883 58208 Mm.392694 NM_001079883 ENSMUSG00000048251 Bcl11b 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 B-cell leukemia/lymphoma 11B 0.012821 0.382166 1.591599 chr17-159 chr17 26091993 26092149 + 45.7 NA Intergenic Intergenic -50493 NM_001081656 240055 Mm.390976 NM_001081656 ENSMUSG00000034413 Neurl1B C230078M08Rik|EG240055|MGC183766|MGC183777 neuralized homolog 1B (Drosophila) 0.012821 0.503185 -5.677132 chr5-308 chr5 85483139 85483295 + 45.7 NA intron (NM_007937, intron 1 of 15) intron (NM_007937, intron 1 of 15) 8726 NM_007937 13839 Mm.438006 NM_007937 ENSMUSG00000029245 Epha5 AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk Eph receptor A5 0.000000 0.484076 -2.500281 chr11-261 chr11 90499457 90499613 + 45.7 NA intron (NM_028011, intron 2 of 15) intron (NM_028011, intron 2 of 15) 4156 NM_028011 71943 Mm.167868 NM_028011 ENSMUSG00000020541 Tom1l1 2310045L10Rik|C80573|Srcasm target of myb1-like 1 (chicken) 0.019231 0.484076 0.137068 chr11-246 chr11 22272878 22273034 + 45.7 NA Intergenic Intergenic -87115 NM_153078 216565 Mm.281732 NM_153078 ENSMUSG00000042302 Ehbp1 AF424697|Flj21950|NACSIN EH domain binding protein 1 0.000000 0.547771 -9.467069 chr12-193 chr12 5220247 5220403 + 45.7 NA intron (NM_001164493, intron 3 of 13) intron (NM_001164493, intron 3 of 13) 181365 NM_001164493 208439 Mm.388281 XM_906219 ENSMUSG00000020627 Klhl29 A230106N14Rik|Gm68|Kbtbd9|mKIAA1921 kelch-like 29 (Drosophila) 0.025641 0.509554 1.538596 chr18-138 chr18 65101831 65101987 + 45.7 NA intron (NM_001114386, intron 1 of 30) intron (NM_001114386, intron 1 of 30) -46986 NM_031881 83814 Mm.98668 NM_001114386 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b neural precursor cell expressed, developmentally down-regulated gene 4-like 0.038462 0.490446 -0.289202 chr8-198 chr8 129461658 129461814 + 45.7 NA Intergenic Intergenic 17790 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.000000 0.484076 -2.929596 chr2-249 chr2 132423377 132423533 + 45.7 NA intron (NM_028637, intron 2 of 2) intron (NM_028637, intron 2 of 2) 41732 NM_028637 73747 Mm.284114 XM_001000361 1110034G24Rik MGC118301 RIKEN cDNA 1110034G24 gene 0.006410 0.522293 -4.424652 chr1-335 chr1 80050784 80050940 + 45.7 NA Intergenic Intergenic 42106 NM_173425 241128 Mm.145511 NM_173425 ENSMUSG00000043230 Fam124b A830043J08Rik family with sequence similarity 124, member B 0.000000 0.433121 1.830356 chr1-318 chr1 51457027 51457183 + 45.7 NA Intergenic B1F|SINE|Alu -34161 NM_028696 109019 Mm.196290 NM_028696 ENSMUSG00000026107 Obfc2a 4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nabp1|Nbp1 oligonucleotide/oligosaccharide-binding fold containing 2A 0.000000 0.471338 -2.072309 chr2-231 chr2 23158065 23158221 + 45.7 NA intron (NM_008752, intron 1 of 1) intron (NM_008752, intron 1 of 1) 14889 NM_008752 18232 Mm.131616 NM_008752 ENSMUSG00000069132 Nxph2 MGC124297|MGC124298 neurexophilin 2 0.000000 0.356688 0.096550 chr4-230 chr4 70039877 70040033 + 45.7 NA Intergenic RMER19B|LTR|ERVK -18666 NM_172694 230316 Mm.251188 NM_172694 ENSMUSG00000039270 Megf9 4933405H16Rik|9630025C07|Egfl5|mKIAA0818 multiple EGF-like-domains 9 0.012821 0.433121 -1.549595 chr3-185 chr3 98457667 98457823 + 45.7 NA Intergenic Intergenic -10140 NM_172863 242109 Mm.444963 NM_172863 ENSMUSG00000050064 Zfp697 9430053K19|AI467503 zinc finger protein 697 0.012821 0.484076 -2.967929 chr2-240 chr2 108725438 108725594 + 45.7 NA Intergenic L1ME4a|LINE|L1 353613 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mett5d1 0610027B03Rik|AI303697|AW049952|MGC118452 methyltransferase 5 domain containing 1 0.000000 0.350318 4.386478 chr7-162 chr7 80060149 80060305 + 45.7 NA promoter-TSS (NM_013659) promoter-TSS (NM_013659) -126 NM_013659 20352 Mm.275909 NM_013659 ENSMUSG00000030539 Sema4b KIAA1745|SemC|Semac|mKIAA1745 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 0.070513 0.624204 1.471553 chr14-64 chr14 8401008 8401164 + 45.7 NA intron (NM_010210, intron 7 of 8) intron (NM_010210, intron 7 of 8) -276794 NR_030680 100042415 Mm.235938 NR_030680 Gm3833 - meiotic nuclear divisions 1 homolog pseudogene 0.006410 0.433121 -3.939049 chr6-179 chr6 92810684 92810840 + 45.7 NA intron (NM_175314, intron 18 of 29) intron (NM_175314, intron 18 of 29) 56183 NM_175314 101401 Mm.257557 NM_175314 Adamts9 1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9 0.006410 0.407643 -1.254078 chr4-225 chr4 58892005 58892161 + 45.7 NA Intergenic Intergenic -12309 NM_146920 258922 Mm.223327 NM_146920 ENSMUSG00000043385 Olfr267 MGC157545|MOR262-1 olfactory receptor 267 0.019231 0.356688 -2.473671 chr1-361 chr1 188175519 188175675 + 45.7 NA Intergenic Intergenic 231183 NM_009367 21808 Mm.18213 NM_009367 ENSMUSG00000039239 Tgfb2 BB105277|Tgf-beta2|Tgfb-2 transforming growth factor, beta 2 0.000000 0.382166 3.075527 chr10-186 chr10 91418167 91418323 + 45.7 NA Intergenic Intergenic 83739 NR_029812 723955 NR_029812 Mir135a-2 Mirn135a-2 microRNA 135a-2 0.012821 0.420382 -3.203599 chr9-239 chr9 59978155 59978311 + 45.7 NA intron (NM_001040426, intron 7 of 17) intron (NM_001040426, intron 7 of 17) -39007 NM_172444 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.006410 0.394904 -2.362709 chr7-176 chr7 126427929 126428085 + 45.7 NA Intergenic Intergenic -11389 NM_019738 56312 Mm.18742 NM_019738 ENSMUSG00000030717 Nupr1 2310032H04Rik|Com1|p8 nuclear protein 1 0.006410 0.439490 -1.940692 chr5-313 chr5 101982420 101982576 + 45.7 NA Intergenic Intergenic -22933 NM_173370 74596 Mm.46764 NM_173370 ENSMUSG00000029330 Cds1 4833409J18Rik|AI314024|AW125888 CDP-diacylglycerol synthase 1 0.006410 0.401274 0.596014 chr16-128 chr16 78356109 78356265 + 45.7 NA Intergenic Lx8|LINE|L1 -96810 NM_009770 12228 Mm.392910 NM_009770 ENSMUSG00000022863 Btg3 ANA|tob5 B-cell translocation gene 3 0.025641 0.522293 -3.317630 chr11-251 chr11 70651923 70652079 + 45.7 NA Intergenic L1M4|LINE|L1 -8956 NM_019400 54189 Mm.7087 NM_019400 ENSMUSG00000020817 Rabep1 AA409789|AI481320|AV213537|AW240603|MGC150053|MGC150054|Rab5ep|rabaptin-5 rabaptin, RAB GTPase binding effector protein 1 0.006410 0.452229 -5.000104 chr13-152 chr13 99128750 99128906 + 45.7 NA intron (NM_012026, intron 9 of 35) intron (NM_012026, intron 9 of 35) 177494 NM_012026 110596 Mm.252718 NM_012026 ENSMUSG00000021662 Rgnef 9230110L08Rik|AI323540|D13Bwg1089e|RIP2|RhoGEF|Rhoip2|p190RhoGEF Rho-guanine nucleotide exchange factor 0.006410 0.464968 -8.102739 chr3-166 chr3 9583769 9583925 + 45.7 NA intron (NM_133218, intron 1 of 8) intron (NM_133218, intron 1 of 8) 9311 NM_133218 170753 Mm.212908 NM_133218 ENSMUSG00000040209 Zfp704 C030026M03|C030034L19Rik|Gig1|Znf704 zinc finger protein 704 0.019231 0.547771 -4.208213 chr2-263 chr2 172618316 172618472 + 45.7 NA Intergenic Intergenic -4386 NM_012046 26972 Mm.23495 NM_001083959 ENSMUSG00000005883 Spo11 AI449549 sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae) 0.012821 0.484076 -3.995519 chr16-113 chr16 10577586 10577742 + 45.7 NA intron (NM_177562, intron 18 of 22) intron (NM_177562, intron 18 of 22) 118700 NM_177562 74374 Mm.159176 NM_177562 ENSMUSG00000068663 Clec16a 4932416N17Rik|AW742259|KIAA0350|mKIAA0350 C-type lectin domain family 16, member A 0.012821 0.515924 -3.541013 chr12-214 chr12 99906128 99906284 + 45.7 NA Intergenic Intergenic -55082 NM_183186 71375 Mm.480620 XM_001473733 ENSMUSG00000033713 Foxn3 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1|MGC107530|MGC36260 forkhead box N3 0.000000 0.547771 -2.072310 chr3-175 chr3 55336642 55336798 + 45.7 NA intron (NM_019978, intron 2 of 16) intron (NM_019978, intron 2 of 16) 6266 NM_001111053 13175 Mm.472264 NM_001111051 ENSMUSG00000027797 Dclk1 1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369 doublecortin-like kinase 1 0.012821 0.433121 -4.611971 chr16-126 chr16 66697397 66697553 + 45.7 NA intron (NM_001145977, intron 5 of 8) intron (NM_001145977, intron 5 of 8) 841693 NM_001145977 239857 Mm.394300 NM_001145977 ENSMUSG00000064115 Cadm2 2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM2 cell adhesion molecule 2 0.006410 0.324841 0.101920 chr17-157 chr17 14948098 14948254 + 45.7 NA Intergenic L1ME2|LINE|L1 111248 NR_033511 100038481 Mm.387544 NR_033511 Gm10510 ENSMUSG00000073453 predicted gene 10510 0.000000 0.433121 1.918230 chr9-256 chr9 102676552 102676708 + 45.7 NA Intergenic Intergenic -16439 NM_013649 20187 Mm.335391 NM_001042607 ENSMUSG00000032547 Ryk AW536699|ERK-3|Vik receptor-like tyrosine kinase 0.000000 0.426752 -5.809155 chr14-76 chr14 117551384 117551540 + 45.7 NA intron (NM_001033336, intron 3 of 30) intron (NM_001033336, intron 3 of 30) 9161 NM_001163675 239273 Mm.478748 NM_001033336 ENSMUSG00000032849 Abcc4 D630049P08Rik|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.006410 0.433121 2.746920 chr10-197 chr10 120650799 120650955 + 45.7 NA Intergenic RMER19B|LTR|ERVK 63372 NM_029057 74694 Mm.233833 XM_001481269 ENSMUSG00000052302 Tbc1d30 4930505D03Rik TBC1 domain family, member 30 0.032051 0.426752 -1.549595 chr19-60 chr19 25774539 25774695 + 45.7 NA Intergenic L1MC4|LINE|L1 35110 NM_145831 226049 Mm.275572 NM_145831 ENSMUSG00000048138 Dmrt2 Terra doublesex and mab-3 related transcription factor 2 0.006410 0.464968 4.556171 chr10-173 chr10 55812187 55812343 + 45.7 NA intron (NM_001033385, intron 21 of 32) intron (NM_001033385, intron 21 of 32) 16934 NM_001163833 73390 Mm.181475 NM_001163833 Msl3l2 1700060H10Rik male-specific lethal 3-like 2 (Drosophila) 0.019231 0.445860 -6.764284 chrX-27 chrX 44139327 44139483 + 45.7 NA Intergenic Intergenic -2226 NM_053123 93761 Mm.229151 NM_053123 ENSMUSG00000031099 Smarca1 5730494M04Rik|Snf2l SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 0.006410 0.382166 -1.733378 chr8-173 chr8 10483938 10484094 + 45.7 NA intron (NM_001081397, intron 23 of 35) intron (NM_001081397, intron 23 of 35) 330122 NM_001081397 244281 Mm.422761 NM_001081397 ENSMUSG00000039057 Myo16 C230040D10Rik|Gm1105|KIAA0865|mKIAA0865 myosin XVI 0.000000 0.515924 1.853906 chr18-133 chr18 50874160 50874316 + 45.7 NA Intergenic B4|SINE|B4 -180354 NM_026108 67365 Mm.158150 NM_026108 ENSMUSG00000048875 Hdhd1a 1700121L12Rik|GS1 haloacid dehalogenase-like hydrolase domain containing 1A 0.006410 0.484076 -1.316373 chr10-192 chr10 107849892 107850048 + 45.7 NA Intergenic Intergenic 113672 NM_054056 114774 Mm.391419 NM_054056 ENSMUSG00000035873 Pawr 2310001G03Rik|PAR4|Par-4 PRKC, apoptosis, WT1, regulator 0.025641 0.458599 1.591306 chr8-199 chr8 131311198 131311354 + 45.7 NA intron (NM_008737, intron 3 of 16) intron (NM_008737, intron 3 of 16) 65946 NR_035436 100316680 NR_035436 Mir1903 mmu-mir-1903 microRNA mir-1903 0.025641 0.509554 -4.197162 chr3-169 chr3 27780133 27780289 + 45.7 NA intron (NM_173182, intron 3 of 25) intron (NM_173182, intron 3 of 25) 121301 NM_173182 72007 Mm.38832 NM_173182 ENSMUSG00000039286 Fndc3b 1600019O04Rik|AW550168|Fad104|KIAA4164|mKIAA4164 fibronectin type III domain containing 3B 0.012821 0.554140 -3.536224 chr1-309 chr1 21471480 21471636 + 45.7 NA intron (NM_023872, intron 6 of 13) intron (NM_023872, intron 6 of 13) 102852 NM_001113187 98582 Mm.326336 NM_001113187 Khdc1b AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c KH domain containing 1B 0.000000 0.496815 1.163835 chr6-175 chr6 89825538 89825694 + 45.7 NA Intergenic LTRIS5-int|LTR|ERV1 10342 NM_053220 113847 Mm.431989 NM_053220 ENSMUSG00000068231 Vmn1r43 V1RA2|V1ra5 vomeronasal 1 receptor 43 0.006410 0.439490 1.873883 chr3-201 chr3 140794155 140794311 + 45.7 NA Intergenic Intergenic 355509 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 0.000000 0.337580 0.053473 chr17-158 chr17 24424507 24424663 + 45.7 NA promoter-TSS (NM_023040) promoter-TSS (NM_023040) 752 NM_027988 71893 Mm.390971 NM_027988 ENSMUSG00000019320 Noxo1 2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt NADPH oxidase organizer 1 0.006410 0.477707 -3.285412 chr4-236 chr4 85537346 85537502 + 45.7 NA intron (NM_029967, intron 1 of 27) intron (NM_029967, intron 1 of 27) 12279 NM_029967 77739 Mm.331690 NM_029967 ENSMUSG00000066113 Adamtsl1 5930437A14Rik|6720426B09Rik|ADAMTSL-1 ADAMTS-like 1 0.006410 0.401274 1.179224 chr18-127 chr18 30396318 30396474 + 45.7 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -19509 NM_181414 225326 Mm.194127 NM_181414 ENSMUSG00000033628 Pik3c3 5330434F23Rik|Vps34 phosphoinositide-3-kinase, class 3 0.000000 0.369427 -1.807258 chr12-230 chr12 119830954 119831110 + 45.7 NA Intergenic Intergenic -56479 NM_001163136 238455 Mm.31376 XM_138397 ENSMUSG00000041886 Macc1 4732474O15Rik|Gm267 metastasis associated in colon cancer 1 0.006410 0.414013 -6.770179 chr1-327 chr1 72170357 72170513 + 45.7 NA Intergenic Intergenic -24920 NM_001005423 381269 Mm.422636 NM_001005423 ENSMUSG00000039395 Mreg Gm974|MGC92980|Wdt2|dsu melanoregulin 0.012821 0.318471 -2.445215 chr11-249 chr11 51695750 51695906 + 45.7 NA intron (NM_199299, intron 1 of 11) intron (NM_199299, intron 1 of 11) 5076 NM_199299 76901 Mm.259996 NM_199299 ENSMUSG00000020387 Phf15 1200017K05Rik|AI480685|Jade2|mKIAA0239 PHD finger protein 15 0.000000 0.528662 -7.725741 chr4-224 chr4 57368413 57368569 + 45.7 NA intron (NM_011207, intron 1 of 25) intron (NM_011207, intron 1 of 25) 27400 NM_011207 545622 Mm.246552 NM_011207 ENSMUSG00000038764 Ptpn3 9530011I20Rik|PTP-H1|PTPCL protein tyrosine phosphatase, non-receptor type 3 0.006410 0.401274 -3.541013 chr4-231 chr4 81143326 81143482 + 45.7 NA Intergenic Intergenic -229368 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.006410 0.394904 -2.064624 chr7-161 chr7 79717751 79717907 + 45.7 NA Intergenic Intergenic -1964 NM_008486 16790 Mm.4487 NM_008486 ENSMUSG00000039062 Anpep Apn|Cd13|Lap-1|Lap1|P150 alanyl (membrane) aminopeptidase 0.012821 0.522293 -2.439037 chr14-65 chr14 15521796 15521952 + 45.7 NA Intergenic Intergenic -153397 NM_011243 218772 Mm.259318 NM_011243 ENSMUSG00000017491 Rarb A830025K23|Hap|Nr1b2|RARbeta2 retinoic acid receptor, beta 0.000000 0.394904 2.199185 chr2-241 chr2 118371130 118371286 + 45.7 NA intron (NM_001033254, intron 3 of 10) intron (NM_001033254, intron 3 of 10) 2522 NM_001145854 214230 Mm.241857 NM_001033254 ENSMUSG00000074923 Pak6 4732456M09 p21 protein (Cdc42/Rac)-activated kinase 6 0.006410 0.515924 -0.454664 chr1-317 chr1 51453141 51453297 + 45.7 NA Intergenic Intergenic -30275 NM_028696 109019 Mm.196290 NM_028696 ENSMUSG00000026107 Obfc2a 4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nabp1|Nbp1 oligonucleotide/oligosaccharide-binding fold containing 2A 0.000000 0.445860 -4.605207 chr5-312 chr5 96815363 96815519 + 45.7 NA intron (NM_175473, intron 14 of 73) intron (NM_175473, intron 14 of 73) 201185 NM_175473 231470 Mm.291120 NM_175473 ENSMUSG00000034687 Fras1 E130113P14Rik|bl|mKIAA1500 Fraser syndrome 1 homolog (human) 0.000000 0.420382 -1.766448 chr9-223 chr9 21730155 21730311 + 45.7 NA intron (NM_023622, intron 9 of 18) intron (NM_023622, intron 9 of 18) 9622 NM_023622 71746 Mm.110594 NM_023622 ENSMUSG00000040146 Rgl3 1300003D20Rik|mFLJ00153 ral guanine nucleotide dissociation stimulator-like 3 0.019231 0.496815 -2.567810 chr2-230 chr2 21086845 21087001 + 45.7 NA Intergenic Intergenic 36196 NM_027728 71233 Mm.27658 NM_027728 ENSMUSG00000026679 Enkur 4933434I06Rik|AU016229|MGC117794 enkurin, TRPC channel interacting protein 0.006410 0.426752 -2.256701 chr8-194 chr8 125907041 125907197 + 45.7 NA intron (NM_001081379, intron 1 of 14) intron (NM_001081379, intron 1 of 14) 20968 NM_001081379 77087 Mm.31567 NM_001081379 ENSMUSG00000035569 Ankrd11 2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod ankyrin repeat domain 11 0.006410 0.490446 3.202825 chr6-161 chr6 49586269 49586425 + 45.7 NA Intergenic Intergenic -165967 NM_023456 109648 Mm.154796 NM_023456 ENSMUSG00000029819 Npy 0710005A05Rik neuropeptide Y 0.012821 0.503185 1.499668 chr11-268 chr11 98749340 98749496 + 45.7 NA Intergenic Intergenic -4367 NM_009024 19401 Mm.439744 NM_001176528 ENSMUSG00000037992 Rara Nr1b1|RAR|RARalpha1 retinoic acid receptor, alpha 0.019231 0.605096 -5.537147 chrX-29 chrX 89296777 89296933 + 45.7 NA Intergenic L2|LINE|L2 -242509 NM_007492 11878 Mm.275547 NM_007492 ENSMUSG00000035277 Arx - aristaless related homeobox 0.000000 0.394904 -2.938412 chr19-70 chr19 47598560 47598716 + 45.7 NA Intergenic Intergenic -8307 NM_175360 108689 Mm.218048 NM_175360 ENSMUSG00000042694 Obfc1 0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32 oligonucleotide/oligosaccharide-binding fold containing 1 0.012821 0.433121 -8.244967 chr5-304 chr5 74526428 74526584 + 45.7 NA intron (NM_001114660, intron 5 of 8) intron (NM_001114660, intron 5 of 8) 49484 NM_026878 68939 Mm.293316 NM_026878 ENSMUSG00000049907 Rasl11b 1190017B18Rik|MGC103217 RAS-like, family 11, member B 0.025641 0.528662 -3.746244 chr2-225 chr2 3095861 3096017 + 45.7 NA intron (NM_001081161, intron 2 of 7) intron (NM_001081161, intron 2 of 7) 60280 NM_001081161 269233 Mm.478311 NM_001081161 ENSMUSG00000050530 Fam171a1 9630050M13Rik|AA409679 family with sequence similarity 171, member A1 0.025641 0.573248 -4.167644 chr11-243 chr11 5870014 5870170 + 45.7 NA 3' UTR (NM_001174054, exon 21 of 21) 3' UTR (NM_001174054, exon 21 of 21) 14332 NM_019661 56418 Mm.294821 NM_019661 ENSMUSG00000002741 Ykt6 0610042I15Rik|1810013M05Rik|AW105923 YKT6 homolog (S. Cerevisiae) 0.000000 0.560510 -1.495782 chr15-127 chr15 58577010 58577166 + 45.7 NA Intergenic Intergenic 76422 NM_175212 74868 Mm.293754 NM_175212 ENSMUSG00000062373 Tmem65 2610029O13Rik|4930438D12Rik transmembrane protein 65 0.006410 0.420382 -3.473837 chr1-346 chr1 135882028 135882184 + 45.7 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 13460 NM_007570 12227 Mm.392646 NM_007570 ENSMUSG00000020423 Btg2 AA959598|APRO1|Pc3|TIS21 B-cell translocation gene 2, anti-proliferative 0.012821 0.471338 -1.197990 chr6-196 chr6 137852498 137852654 + 45.7 NA Intergenic (CAGAA)n|Simple_repeat|Simple_repeat 133804 NM_172733 232449 Mm.29181 NM_172733 ENSMUSG00000030225 Dera 2010002D22Rik|2500002K03Rik|DEOC 2-deoxyribose-5-phosphate aldolase homolog (C. elegans) 0.000000 0.452229 -7.459587 chr3-191 chr3 101853669 101853825 + 45.7 NA Intergenic L1M5|LINE|L1 111537 NM_172295 242125 Mm.32900 NM_172295 ENSMUSG00000044313 BC037703 MGC47256 cDNA sequence BC037703 0.006410 0.382166 -1.290818 chr11-248 chr11 50493353 50493509 + 45.7 NA intron (NM_175643, intron 2 of 21) intron (NM_175643, intron 2 of 21) 47924 NM_175643 216725 Mm.339048 NM_175643 ENSMUSG00000036545 Adamts2 4732482M10|A430089F14|ADAM-TS2|ADAMTS-3|KIAA4060|PCINP|hPCPNI|mKIAA4060 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 0.000000 0.439490 4.164241 chr6-174 chr6 86592204 86592360 + 45.7 NA Intergenic Intergenic -1525 NM_026414 67855 Mm.183043 NM_026414 ENSMUSG00000033508 Asprv1 2300003P22Rik|AA986851|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 0.000000 0.445860 0.828837 chr15-135 chr15 83864911 83865067 + 45.7 NA intron (NM_029946, intron 3 of 31) intron (NM_029946, intron 3 of 31) 28126 NM_029946 77627 Mm.196288 NM_001161628 ENSMUSG00000022441 Efcab6 4931407K02Rik|4932408N08Rik|KIAA1672|bM150J22.2|mKIAA1672 EF-hand calcium binding domain 6 0.012821 0.566879 -4.998217 chr6-191 chr6 124550632 124550788 + 45.7 NA Intergenic Intergenic 14662 NM_001113356 667277 Mm.333375 XM_001002804 ENSMUSG00000055172 C1rb Gm8551|mC1rB complement component 1, r subcomponent B 0.006410 0.439490 -2.128882 chr5-332 chr5 142453318 142453474 + 45.7 NA intron (NM_177879, intron 44 of 44) intron (NM_177879, intron 44 of 44) -200574 NM_199068 17425 Mm.24214 NM_199068 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf forkhead box K1 0.012821 0.509554 -4.100725 chr7-165 chr7 84137680 84137836 + 45.7 NA intron (NM_007488, intron 17 of 18) intron (NM_007488, intron 17 of 18) -109680 NM_133722 70178 Mm.23914 NM_133722 ENSMUSG00000038459 Fam108c 2210412D01Rik|AL023007|Fam108c1 family with sequence similarity 108, member C 0.012821 0.541401 -3.479134 chr4-221 chr4 47279407 47279563 + 45.7 NA intron (NM_009928, intron 7 of 39) intron (NM_009928, intron 7 of 39) 50374 NM_009928 12819 Mm.233547 NM_009928 ENSMUSG00000028339 Col15a1 - collagen, type XV, alpha 1 0.012821 0.509554 -1.706208 chr9-258 chr9 115179603 115179759 + 45.7 NA Intergenic Intergenic -20562 NM_024222 68292 Mm.296158 NM_024222 ENSMUSG00000032437 Stt3b 1300006C19Rik|Simp STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) 0.019231 0.407643 1.200236 chr6-178 chr6 90895575 90895731 + 45.7 NA Intergenic Intergenic -120026 NM_001134384 232227 Mm.473438 XM_001479632 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 IQ motif and Sec7 domain 1 0.019231 0.445860 2.890320 chr16-115 chr16 10888625 10888657 + 45.7 NA intron (NM_019980, intron 1 of 3) intron (NM_019980, intron 1 of 3) 18058 NM_019980 56722 Mm.294753 NM_019980 ENSMUSG00000022500 Litaf 3222402J11Rik|C85531|N4WBP3|TBX1 LPS-induced TN factor 0.000000 0.363636 -12.258307 chr3-204 chr3 145279792 145279948 + 45.7 NA exon (NM_027770, exon 9 of 60) exon (NM_027770, exon 9 of 60) 50013 NM_027770 71355 Mm.235570 NM_027770 ENSMUSG00000028197 Col24a1 5430404K19Rik|MGC107332 collagen, type XXIV, alpha 1 0.012821 0.471338 -0.140848 chr7-175 chr7 123916202 123916358 + 45.7 NA Intergenic Intergenic -624683 NM_001081329 210162 Mm.135397 NM_001081329 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 0.006410 0.484076 -1.406640 chr12-213 chr12 94632313 94632469 + 45.7 NA Intergenic ORR1B1|LTR|MaLR -1455665 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 KIAA0405 fibronectin leucine rich transmembrane protein 2 0.006410 0.420382 -5.626256 chr13-133 chr13 23670498 23670654 + 45.7 NA Intergenic Intergenic 20848 NM_178189 319164 Mm.261973 NM_178189 ENSMUSG00000069270 Hist1h2ac 9030420B16|Hist1h2ab|Hist1h2ad|Hist1h2ae|Hist1h2ag|Hist1h2ai|Hist1h2an|Hist1h2ao histone cluster 1, H2ac 0.012821 0.407643 -1.583304 chr14-72 chr14 71543096 71543252 + 45.7 NA Intergenic Intergenic -98089 NM_207636 319448 Mm.450820 NM_207636 ENSMUSG00000033487 Fndc3a 1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys fibronectin type III domain containing 3A 0.006410 0.426752 -4.229281 chr19-71 chr19 53750650 53750806 + 45.7 NA intron (NM_001170847, intron 1 of 13) intron (NM_001170847, intron 1 of 13) 20111 NM_001170847 73713 Mm.479259 XM_001002314 Rbm20 1110018J23Rik|2010003H22Rik|AI646761 RNA binding motif protein 20 0.019231 0.496815 -1.340217 chr3-194 chr3 108141352 108141508 + 45.7 NA intron (NM_010358, intron 7 of 7) intron (NM_010358, intron 7 of 7) 4599 NM_010358 14862 Mm.37199 NM_010358 ENSMUSG00000058135 Gstm1 Gstb-1|Gstb1 glutathione S-transferase, mu 1 0.012821 0.471338 1.465374 chr7-174 chr7 121628163 121628319 + 45.7 NA Intergenic L2|LINE|L2 -28017 NM_011325 20277 Mm.7709 NM_011325 ENSMUSG00000030873 Scnn1b - sodium channel, nonvoltage-gated 1 beta 0.012821 0.522293 -2.400658 chr11-264 chr11 93950605 93950761 + 45.7 NA Intergenic Intergenic -76860 NM_009427 22057 Mm.259673 NM_009427 ENSMUSG00000037573 Tob1 Tob|Trob transducer of ErbB-2.1 0.025641 0.662420 -2.523620 chr19-73 chr19 54213565 54213721 + 45.7 NA Intergenic L1MEc|LINE|L1 115150 NM_007417 11551 Mm.235195 NM_007417 ENSMUSG00000033717 Adra2a AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR adrenergic receptor, alpha 2a 0.006410 0.388535 -3.516886 chr1-316 chr1 40289460 40289616 + 45.7 NA intron (NM_133193, intron 5 of 10) intron (NM_133193, intron 5 of 10) 20366 NM_133193 107527 Mm.155583 NM_133193 ENSMUSG00000070942 Il1rl2 AI481289|AW551444|IL-1Rrp2 interleukin 1 receptor-like 2 0.000000 0.509554 -3.805885 chr19-69 chr19 46350387 46350543 + 45.7 NA Intergenic MYSERV|LTR|ERVK -7582 NM_001177369 18034 Mm.102365 NM_001177369 ENSMUSG00000025225 Nfkb2 NF-kappaB2|lyt|p49|p49/p100|p50B|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100 0.012821 0.407643 1.179223 chr4-259 chr4 151954305 151954461 + 45.7 NA Intergenic Intergenic 372247 NM_001099299 230959 Mm.318874 XM_001475023 ENSMUSG00000039546 Ajap1 Gm573 adherens junction associated protein 1 0.044872 0.509554 -1.384349 chr9-232 chr9 49733880 49734036 + 45.7 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -182659 NM_010875 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.012821 0.375796 -6.155514 chr12-205 chr12 59474199 59474355 + 45.7 NA Intergenic Intergenic -287007 NM_025809 66864 Mm.280563 NM_025809 ENSMUSG00000045930 Clec14a 1200003C23Rik|AI642649 C-type lectin domain family 14, member a 0.006410 0.439490 -4.466776 chr4-246 chr4 131925103 131925259 + 45.7 NA intron (NM_211357, intron 1 of 14) intron (NM_211357, intron 1 of 14) 14050 NM_010166 14050 Mm.227733 NM_010166 ENSMUSG00000028886 Eya3 AI844637 eyes absent 3 homolog (Drosophila) 0.019231 0.566879 -4.035104 chr2-255 chr2 151432715 151432871 + 45.7 NA promoter-TSS (NM_212446) promoter-TSS (NM_212446) -59 NM_212446 228769 Mm.146984 NM_144889 ENSMUSG00000032869 Psmf1 AW048666|BC012260|MGC18784|PI31 proteasome (prosome, macropain) inhibitor subunit 1 0.083333 0.541401 -4.813134 chr1-333 chr1 78182294 78182450 + 45.7 NA Intergenic Intergenic -11120 NM_001004173 433323 Mm.406972 NM_001004173 ENSMUSG00000032908 Sgpp2 MGC59240|SPPase2|Spp2 sphingosine-1-phosphate phosphotase 2 0.006410 0.433121 -3.003338 chr18-139 chr18 65201391 65201547 + 45.7 NA intron (NM_031881, intron 2 of 29) intron (NM_031881, intron 2 of 29) 52574 NM_031881 83814 Mm.98668 NM_001114386 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b neural precursor cell expressed, developmentally down-regulated gene 4-like 0.012821 0.535032 -5.662597 chr17-163 chr17 28245641 28245797 + 45.7 NA Intergenic CpG -12730 NM_026290 67645 Mm.46170 NM_026290 ENSMUSG00000024223 4930511I11Rik AV041658 RIKEN cDNA 4930511I11 gene 0.096154 0.719745 12.141450 chr15-132 chr15 78974828 78974984 + 45.7 NA intron (NM_027231, intron 3 of 4) intron (NM_027231, intron 3 of 4) 6285 NM_027231 69833 Mm.279861 NM_027231 ENSMUSG00000033020 Polr2f 1810060D16Rik polymerase (RNA) II (DNA directed) polypeptide F 0.012821 0.509554 -0.810766 chr16-114 chr16 10886190 10886346 + 45.7 NA intron (NM_019980, intron 1 of 3) intron (NM_019980, intron 1 of 3) 20431 NM_019980 56722 Mm.294753 NM_019980 ENSMUSG00000022500 Litaf 3222402J11Rik|C85531|N4WBP3|TBX1 LPS-induced TN factor 0.006410 0.522293 1.461646 chr17-171 chr17 45037407 45037563 + 45.7 NA promoter-TSS (NM_008302) promoter-TSS (NM_008302) -643 NM_008302 15516 Mm.2180 NM_008302 ENSMUSG00000023944 Hsp90ab1 90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb|MGC115780 heat shock protein 90 alpha (cytosolic), class B member 1 0.064103 0.681529 -6.863916 chr5-333 chr5 143888348 143888504 + 45.7 NA intron (NM_011182, intron 1 of 12) intron (NM_011182, intron 1 of 12) 10361 NM_011182 19159 Mm.281003 NM_001163548 ENSMUSG00000018001 Cyth3 AI648983|ARNO3|CLM3|Grp1|KIAA4241|Pscd3 cytohesin 3 0.000000 0.401274 -5.008651 chr5-292 chr5 39469480 39469636 + 45.7 NA Intergenic Intergenic -304616 NM_013748 27278 Mm.440845 NM_013748 ENSMUSG00000039315 Clnk MGC159342|MIST cytokine-dependent hematopoietic cell linker 0.019231 0.509554 -3.330369 chr17-162 chr17 28239672 28239828 + 45.7 NA Intergenic B1_Mur2|SINE|Alu -18699 NM_026290 67645 Mm.46170 NM_026290 ENSMUSG00000024223 4930511I11Rik AV041658 RIKEN cDNA 4930511I11 gene 0.025641 0.484076 -3.289306 chr6-190 chr6 116601037 116601193 + 45.7 NA 3' UTR (NM_178045, exon 11 of 11) 3' UTR (NM_178045, exon 11 of 11) -6519 NM_026057 67255 Mm.18810 NM_026057 ENSMUSG00000059878 Zfp422 2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22 zinc finger protein 422 0.000000 0.535032 -0.701022 chr7-164 chr7 82909353 82909509 + 45.7 NA Intergenic Intergenic 165914 NM_175366 108797 Mm.306789 XM_620516 Mex3b 4931439A04Rik|M-04814|Rkhd3|mKIAA2009 mex3 homolog B (C. elegans) 0.000000 0.420382 -5.558237 chr1-319 chr1 51722952 51723108 + 45.7 NA exon (NM_001161817, exon 17 of 31) exon (NM_001161817, exon 17 of 31) 137489 NM_010863 17912 Mm.3390 NM_001161817 ENSMUSG00000018417 Myo1b AA406997|myosin-1b myosin IB 0.012821 0.503185 -2.254771 chr6-173 chr6 85297072 85297228 + 45.7 NA intron (NM_178639, intron 1 of 13) intron (NM_178639, intron 1 of 13) 1930 NM_178639 94282 Mm.121485 NM_178639 ENSMUSG00000033720 Sfxn5 C230001H08Rik sideroflexin 5 0.012821 0.528662 -0.091389 chr5-302 chr5 73224826 73224982 + 45.7 NA intron (NM_001113423, intron 2 of 7) intron (NM_001113423, intron 2 of 7) 31453 NM_153567 75991 Mm.478300 NM_001113423 ENSMUSG00000036087 Slain2 5033405K12Rik|8030444K12Rik|AI596370|MGC47019|mKIAA1458 SLAIN motif family, member 2 0.012821 0.484076 1.396428 chr16-132 chr16 93614889 93615045 + 45.7 NA intron (NM_026700, intron 2 of 3) intron (NM_026700, intron 2 of 3) 14521 NM_027293 70028 Mm.23230 NM_026700 ENSMUSG00000022946 Dopey2 0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933 dopey family member 2 0.000000 0.433121 -2.349329 chr5-305 chr5 75013465 75013621 + 45.7 NA Intergenic Intergenic -28943 NM_001159577 16924 Mm.440403 NM_001159577 ENSMUSG00000029228 Lnx1 Lnx ligand of numb-protein X 1 0.006410 0.477707 -5.046663 chr4-229 chr4 63984272 63984277 + 45.7 NA Intergenic SYNREP_MM|Satellite|Satellite -477187 NM_011607 21923 Mm.454219 NM_011607 ENSMUSG00000028364 Tnc AI528729|C130033P17Rik|Hxb|MGC144208|MGC144209|TN|TN-C|Ten|cytotactin|tenascin-C tenascin C 0.000000 0.166667 -10000000000.000000 chr3-186 chr3 99450284 99450440 + 45.7 NA intron (NM_009323, intron 5 of 7) intron (NM_009323, intron 5 of 7) 67542 NM_009323 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de T-box 15 0.012821 0.433121 3.158714 chr6-181 chr6 94720765 94720921 + 45.7 NA Intergenic L2|LINE|L2 -55235 NM_008377 16206 Mm.245210 NM_008377 ENSMUSG00000030029 Lrig1 D6Bwg0781e|Img|LIG-1 leucine-rich repeats and immunoglobulin-like domains 1 0.044872 0.496815 -0.971677 chr9-243 chr9 66655357 66655513 + 45.7 NA intron (NM_173413, intron 3 of 7) intron (NM_173413, intron 3 of 7) -21585 NM_026674 68318 Mm.284229 NM_026674 ENSMUSG00000053040 Aph1c 0610008A10Rik|APH-1b|Aph1b anterior pharynx defective 1c homolog (C. elegans) 0.000000 0.375796 0.076849 chr9-250 chr9 84710263 84710419 + 45.7 NA Intergenic Intergenic 413501 NM_001160378 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.000000 0.407643 -9.489696 chr9-229 chr9 31333673 31333829 + 45.7 NA Intergenic Intergenic -119948 NM_144936 235135 Mm.390134 NM_144936 ENSMUSG00000041737 Tmem45b BC018222|MGC25912|MGC37581 transmembrane protein 45b 0.032051 0.554140 -5.704720 chr14-71 chr14 45606837 45606993 + 45.7 NA Intergenic (CACAG)n|Simple_repeat|Simple_repeat -75502 NM_028222 72391 Mm.272394 XM_899867 ENSMUSG00000037628 Cdkn3 2410006H10Rik cyclin-dependent kinase inhibitor 3 0.006410 0.484076 -3.652937 chr6-195 chr6 135419723 135419879 + 45.7 NA Intergenic Intergenic 91178 NM_010128 13730 Mm.182785 NM_010128 ENSMUSG00000030208 Emp1 TMP epithelial membrane protein 1 0.000000 0.388535 -1.511276 chr10-194 chr10 117361457 117361613 + 45.7 NA Intergenic Intergenic -112568 NM_024457 215449 Mm.392484 NM_024457 ENSMUSG00000052681 Rap1b 2810443E11Rik RAS related protein 1b 0.012821 0.433121 -0.988526 chr2-266 chr2 174416785 174416941 + 45.7 NA intron (NM_007903, intron 2 of 4) intron (NM_007903, intron 2 of 4) 13152 NM_007903 13616 Mm.9478 NM_007903 ENSMUSG00000027524 Edn3 114-CH19|114CH19|ls|tmgc48 endothelin 3 0.000000 0.445860 2.643680 chr1-347 chr1 153393951 153394107 + 45.7 NA intron (NM_022018, intron 1 of 13) intron (NM_022018, intron 1 of 13) 60439 NM_022018 63913 Mm.157700 NM_022018 ENSMUSG00000026483 Fam129a AI256368|AU019833|Niban family with sequence similarity 129, member A 0.019231 0.439490 -4.325935 chr11-274 chr11 119035941 119036097 + 45.7 NA intron (NM_172443, intron 1 of 11) intron (NM_172443, intron 1 of 11) 8570 NM_172443 207592 Mm.205263 NM_172443 ENSMUSG00000039976 Tbc1d16 B930087K01|BC026530|Tcd1d16 TBC1 domain family, member 16 0.019231 0.605096 -0.655057 chr5-326 chr5 135268674 135268830 + 45.7 NA Intergenic L2|LINE|L2 -2088 NM_009902 12739 Mm.158662 NM_009902 ENSMUSG00000070473 Cldn3 AI182374|Cpetr2|mRVP1 claudin 3 0.012821 0.464968 -0.454664 chr2-248 chr2 128658537 128658693 + 45.7 NA promoter-TSS (NM_178404) promoter-TSS (NM_178404) -227 NM_178404 78751 Mm.26377 NM_178404 ENSMUSG00000042851 Zc3h6 4631426G04Rik|4833425H18Rik|AU024389|AW060453|KIAA2035|Zc3hdc6|mKIAA2035 zinc finger CCCH type containing 6 0.076923 0.636943 -3.485933 chr16-117 chr16 21742446 21742602 + 45.7 NA Intergenic Intergenic -40707 NM_023737 74147 Mm.28100 NM_023737 ENSMUSG00000022853 Ehhadh 1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase 0.012821 0.515924 -4.757704 chr3-193 chr3 104715754 104715910 + 45.7 NA Intergenic Intergenic -51896 NM_009196 20501 Mm.9086 NM_009196 ENSMUSG00000032902 Slc16a1 AL022710|Mct1 solute carrier family 16 (monocarboxylic acid transporters), member 1 0.012821 0.426752 -2.445215 chr17-179 chr17 78174513 78174669 + 45.7 NA intron (NM_015800, intron 2 of 16) intron (NM_015800, intron 2 of 16) 69286 NM_015800 50766 Mm.311912 NM_015800 ENSMUSG00000024074 Crim1 AU015004 cysteine rich transmembrane BMP regulator 1 (chordin like) 0.012821 0.407643 -1.151666 chr12-212 chr12 79000905 79001061 + 45.7 NA Intergenic Intergenic -144511 NM_172952 268566 Mm.453131 NM_145965 ENSMUSG00000047454 Gphn 5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|MGC150066|MGC38765|geph gephyrin 0.000000 0.312102 -3.124291 chr10-168 chr10 17418278 17418434 + 45.7 NA Intergenic Intergenic 5713 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.025641 0.509554 -0.150959 chr11-250 chr11 65746641 65746797 + 45.7 NA intron (NM_001099633, intron 49 of 68) intron (NM_001099633, intron 49 of 68) 123281 NM_026107 52712 Mm.340052 NM_026107 ENSMUSG00000018347 Zkscan6 1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18 zinc finger with KRAB and SCAN domains 6 0.006410 0.464968 3.208961 chr15-121 chr15 22846858 22847014 + 45.7 NA Intergenic Intergenic -134251 NM_001081299 320865 Mm.464338 XM_001487793 Cdh18 B230220E17Rik|Cdh14l cadherin 18 0.000000 0.369427 2.635958 chr12-211 chr12 78618826 78618982 + 45.7 NA Intergenic Intergenic 461044 NM_016893 53618 Mm.35628 NM_016893 ENSMUSG00000021065 Fut8 - fucosyltransferase 8 0.000000 0.496815 -2.187520 chr5-310 chr5 93032607 93032763 + 45.7 NA intron (NM_026557, intron 3 of 8) intron (NM_026557, intron 3 of 8) -5396 NR_028429 381650 Mm.392636 XM_975229 ENSMUSG00000060466 Thap6 4930534K21Rik|AI448650 THAP domain containing 6 0.000000 0.394904 0.656136 chr1-363 chr1 193896834 193896990 + 45.7 NA intron (NM_001038607, intron 1 of 10) intron (NM_001038607, intron 1 of 10) 5317 NM_010600 16510 Mm.4489 NM_001038607 ENSMUSG00000058248 Kcnh1 M-eag|MGC124419|MGC124420 potassium voltage-gated channel, subfamily H (eag-related), member 1 0.006410 0.445860 -1.120666 chr1-315 chr1 38125697 38125853 + 45.7 NA intron (NM_010678, intron 22 of 22) intron (NM_010678, intron 22 of 22) -51567 NM_019570 56210 Mm.389103 NM_019570 ENSMUSG00000026082 Rev1 1110027I23Rik|AU022044|MGC66950|Rev1l REV1 homolog (S. cerevisiae) 0.019231 0.515924 -6.743512 chr11-303 chr11 63679047 63679203 + 40.6 NA Intergenic Intergenic 59354 NM_018805 54710 Mm.274426 NM_018805 ENSMUSG00000070407 Hs3st3b1 3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 0.000000 0.439490 -2.835210 chr5-419 chr5 144242758 144242914 + 40.6 NA intron (NM_177682, intron 14 of 14) intron (NM_177682, intron 14 of 14) 25544 NM_177682 231874 Mm.320432 NM_177682 ENSMUSG00000029617 AU022870 MGC56855 expressed sequence AU022870 0.000000 0.484076 -6.468344 chr7-231 chr7 141658643 141658799 + 40.6 NA intron (NM_028801, intron 17 of 48) intron (NM_028801, intron 17 of 48) 10260 NM_028801 74180 Mm.200752 NM_028801 ENSMUSG00000066108 Muc5b 2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b mucin 5, subtype B, tracheobronchial 0.006410 0.528662 1.873882 chr4-277 chr4 59855500 59855656 + 40.6 NA Intergenic Intergenic 22331 NM_001013577 66209 Mm.443220 NM_001013577 ENSMUSG00000038544 1110054O05Rik 2610312O17Rik|AA399876|Ssbip1 RIKEN cDNA 1110054O05 gene 0.012821 0.471338 -2.140832 chr3-243 chr3 117810116 117810272 + 40.6 NA intron (NM_029655, intron 7 of 8) intron (NM_029655, intron 7 of 8) 50746 NM_001190156 76561 Mm.33824 NM_001190156 ENSMUSG00000028007 Snx7 2510028H01Rik|MGC107328 sorting nexin 7 0.006410 0.343949 1.179223 chr6-229 chr6 119203343 119203499 + 40.6 NA intron (NM_001033382, intron 1 of 37) intron (NM_001033382, intron 1 of 37) 1277 NM_001033382 319734 Mm.440773 NM_001033382 ENSMUSG00000041460 Cacna2d4 5730412N02Rik|BE686333 calcium channel, voltage-dependent, alpha 2/delta subunit 4 0.006410 0.554140 1.904647 chr8-241 chr8 129636693 129636849 + 40.6 NA Intergenic Intergenic -157245 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.025641 0.490446 4.565382 chr16-162 chr16 81897589 81897745 + 40.6 NA Intergenic Intergenic 814379 NM_010954 17968 Mm.433941 NM_001113208 ENSMUSG00000022762 Ncam2 Ncam-2|Ocam|RNCAM neural cell adhesion molecule 2 0.000000 0.414013 -2.375568 chr6-222 chr6 99061968 99062124 + 40.6 NA intron (NM_053202, intron 1 of 15) intron (NM_053202, intron 1 of 15) 66435 NM_053202 108655 Mm.461753 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 0.012821 0.522293 1.684977 chr11-299 chr11 30457509 30457665 + 40.6 NA intron (NM_029344, intron 3 of 3) intron (NM_029344, intron 3 of 3) -85758 NM_001100394 75087 Mm.159422 NM_001100394 4930505A04Rik - RIKEN cDNA 4930505A04 gene 0.000000 0.477707 -2.681478 chr6-231 chr6 119609557 119609713 + 40.6 NA intron (NM_053204, intron 17 of 20) intron (NM_053204, intron 17 of 20) -99669 NM_009525 22419 Mm.321818 NM_009525 ENSMUSG00000030170 Wnt5b AW545702|Wnt-5b wingless-related MMTV integration site 5B 0.012821 0.509554 -3.394601 chr3-222 chr3 66430760 66430916 + 40.6 NA Intergenic Intergenic -46090 NM_145820 72789 Mm.443526 NM_028357 ENSMUSG00000027831 Veph1 2810471M23Rik|Veph ventricular zone expressed PH domain homolog 1 (zebrafish) 0.000000 0.573248 -2.736044 chr14-96 chr14 104320132 104320288 + 40.6 NA Intergenic Intergenic 175859 NM_029561 76273 Mm.387487 NM_001190989 ENSMUSG00000053253 Ndfip2 0710001O20Rik|2810436B12Rik|9130207N19Rik|KIAA1165|N4wbp5a|mKIAA1165 Nedd4 family interacting protein 2 0.000000 0.388535 0.573818 chr18-151 chr18 44457264 44457420 + 40.6 NA Intergenic (TCCTG)n|Simple_repeat|Simple_repeat -2062 NM_001033621 58916 Mm.143804 NM_001033621 ENSMUSG00000024471 Myot 5530402I04Rik|Ttid myotilin 0.000000 0.528662 -9.033633 chr9-276 chr9 22576996 22577152 + 40.6 NA intron (NM_178415, intron 21 of 22) intron (NM_178415, intron 21 of 22) 350958 NM_178415 319845 Mm.176725 NM_178415 ENSMUSG00000035919 Bbs9 E130103I17Rik Bardet-Biedl syndrome 9 (human) 0.006410 0.369427 -2.473671 chrX-35 chrX 112370928 112371084 + 40.6 NA Intergenic Intergenic 33430 NR_035504 100316718 NR_035504 Mir2132 mmu-mir-2132 microRNA mir-2132 0.006410 0.388535 -1.971551 chr15-140 chr15 3347473 3347629 + 40.6 NA intron (NM_001048147, intron 2 of 8) intron (NM_001048147, intron 2 of 8) 73936 NM_001048147 14600 Mm.3986 NM_001048147 ENSMUSG00000055737 Ghr AA986417|GHBP|GHR/BP growth hormone receptor 0.012821 0.496815 0.907096 chr8-215 chr8 71960248 71960404 + 40.6 NA Intergenic Intergenic -57398 NM_007509 11966 Mm.392573 NM_007509 ENSMUSG00000006273 Atp6v1b2 AI194269|AI790362|Atp6b2|HO57|R74844 ATPase, H+ transporting, lysosomal V1 subunit B2 0.000000 0.394904 -1.408477 chr13-180 chr13 63966450 63966606 + 40.6 NA Intergenic Intergenic 131895 NM_008291 15487 Mm.5109 NM_008291 ENSMUSG00000033122 Hsd17b3 - hydroxysteroid (17-beta) dehydrogenase 3 0.019231 0.477707 -2.205743 chr17-206 chr17 62311229 62311385 + 40.6 NA intron (NM_207654, intron 2 of 4) intron (NM_207654, intron 2 of 4) 255472 NM_207654 13640 Mm.401670 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 0.019231 0.503185 -6.192167 chr13-177 chr13 56085480 56085636 + 40.6 NA intron (NM_001159514, intron 8 of 8) intron (NM_001159514, intron 8 of 8) 59614 NM_012015 26914 Mm.478369 XM_001476780 ENSMUSG00000015937 H2afy H2AF12M|mH2a1|macroH2A1 H2A histone family, member Y 0.000000 0.573248 -3.228306 chr13-196 chr13 111396918 111397074 + 40.6 NA intron (NM_023852, intron 1 of 4) intron (NM_023852, intron 1 of 4) 4088 NM_023852 67295 Mm.151600 NM_023852 ENSMUSG00000021700 Rab3c 2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886|MGC124069 RAB3C, member RAS oncogene family 0.000000 0.388535 -6.018505 chr4-323 chr4 141428676 141428832 + 40.6 NA intron (NM_001109685, intron 3 of 7) intron (NM_001109685, intron 3 of 7) 53530 NM_144531 71529 Mm.477412 NM_001109684 ENSMUSG00000040606 9030409G11Rik 2310007B04Rik|AI256607|AI666764|AW061099|Kaz|Kazrin RIKEN cDNA 9030409G11 gene 0.012821 0.535032 -3.448588 chr13-164 chr13 29609121 29609277 + 40.6 NA intron (NM_144536, intron 9 of 15) intron (NM_144536, intron 9 of 15) 253854 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.000000 0.452229 -2.523621 chr10-246 chr10 119351560 119351716 + 40.6 NA intron (NM_133442, intron 6 of 21) intron (NM_133442, intron 6 of 21) 129067 NM_028736 74053 Mm.196692 NM_028736 ENSMUSG00000034813 Grip1 4931400F03Rik|KIAA4223|eb|mKIAA4223 glutamate receptor interacting protein 1 0.006410 0.503185 0.031244 chr3-253 chr3 130078851 130079007 + 40.6 NA Intergenic Intergenic -26000 NM_207209 99683 Mm.192303 NM_207209 ENSMUSG00000001052 Sec24b AI605202|SEC24 Sec24 related gene family, member B (S. cerevisiae) 0.006410 0.464968 3.174189 chr1-394 chr1 66889084 66889240 + 40.6 NA Intergenic RMER6D|LTR|ERVK -10898 NM_021285 17901 Mm.1000 NM_001113387 ENSMUSG00000061816 Myl1 AI325107|MLC1f|MLC3f|Mylf myosin, light polypeptide 1 0.000000 0.407643 1.073378 chr13-160 chr13 21687222 21687378 + 40.6 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -4855 NM_146543 258536 Mm.223076 NM_146543 ENSMUSG00000056866 Olfr1360 MGC167510|MGC167593|MGC167676|MGC167759|MOR256-10|MOR256-35 olfactory receptor 1360 0.000000 0.426752 -5.192185 chr4-297 chr4 101498569 101498725 + 40.6 NA Intergenic Intergenic 13876 NM_001085520 381536 Mm.297685 XM_355504 ENSMUSG00000078625 Gm12789 OTTMUSG00000008445 predicted gene 12789 0.012821 0.414013 -4.535810 chr5-408 chr5 135243883 135244039 + 40.6 NA Intergenic Intergenic -12400 NM_009903 12740 Mm.7339 NM_009903 ENSMUSG00000047501 Cldn4 Cep-r|Cpetr|Cpetr1 claudin 4 0.019231 0.522293 -2.032000 chr2-326 chr2 143991898 143992054 + 40.6 NA Intergenic Intergenic 29501 NM_028984 74528 Mm.386817 NM_028984 ENSMUSG00000027424 8430406I07Rik AI426476 RIKEN cDNA 8430406I07 gene 0.006410 0.452229 0.468105 chr11-326 chr11 104214759 104214915 + 40.6 NA intron (NM_001081045, intron 2 of 13) intron (NM_001081045, intron 2 of 13) 43544 NM_001081045 76719 Mm.136418 NM_001081045 ENSMUSG00000018412 1700081L11Rik 9430041J06Rik|KIAA1267|MGC90742|mKIAA1267 RIKEN cDNA 1700081L11 gene 0.000000 0.388535 -0.194632 chr3-258 chr3 146132699 146132855 + 40.6 NA 3' UTR (NM_026656, exon 14 of 14) 3' UTR (NM_026656, exon 14 of 14) -25569 NM_022983 65086 Mm.155520 NM_022983 ENSMUSG00000036832 Lpar3 Edg7|lpA3 lysophosphatidic acid receptor 3 0.006410 0.541401 -3.805885 chr3-238 chr3 101933589 101933745 + 40.6 NA Intergenic Intergenic 31617 NM_172295 242125 Mm.32900 NM_172295 ENSMUSG00000044313 BC037703 MGC47256 cDNA sequence BC037703 0.032051 0.515924 -1.230738 chr1-396 chr1 73108550 73108706 + 40.6 NA Intergenic Intergenic -159522 NM_009407 21958 Mm.425024 NM_009407 ENSMUSG00000026182 Tnp1 Stp-1|TP1|Tp-1 transition protein 1 0.000000 0.484076 5.342546 chr19-75 chr19 3283016 3283029 + 40.6 NA promoter-TSS (NM_009212) promoter-TSS (NM_009212) -12 NM_009212 20589 Mm.3179 NM_009212 ENSMUSG00000024831 Ighmbp2 AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma immunoglobulin mu binding protein 2 0.076923 0.571429 -10000000000.000000 chr12-243 chr12 45487939 45488095 + 40.6 NA Intergenic Intergenic 288847 NM_176930 319504 Mm.208439 NM_001146031 ENSMUSG00000020598 Nrcam Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343 neuron-glia-CAM-related cell adhesion molecule 0.000000 0.401274 2.618944 chr9-281 chr9 36766933 36767089 + 40.6 NA intron (NM_001029838, intron 2 of 12) intron (NM_001029838, intron 2 of 12) 129926 NM_001029838 208076 Mm.260335 NM_001029838 ENSMUSG00000035934 Pknox2 D230005H23Rik|Prep2 Pbx/knotted 1 homeobox 2 0.025641 0.484076 -3.845236 chr3-229 chr3 85737894 85738050 + 40.6 NA intron (NM_144896, intron 11 of 12) intron (NM_144896, intron 11 of 12) 77917 NM_144896 229487 Mm.52275 NM_144896 ENSMUSG00000028085 Pet112l 9430026F02Rik|MGC11629 PET112-like (yeast) 0.006410 0.573248 3.569620 chr3-248 chr3 125851851 125852007 + 40.6 NA Intergenic Intergenic 78643 NM_011674 22239 Mm.306021 NM_011674 ENSMUSG00000032854 Ugt8a AI850488|AW455908|Cgt|Ugt8|mCerGT UDP galactosyltransferase 8A 0.000000 0.363057 2.393068 chr1-409 chr1 88318663 88318819 + 40.6 NA Intergenic CpG -39165 NM_008972 19231 Mm.19187 NM_008972 ENSMUSG00000026238 Ptma MGC102090|MGC103390|Thym prothymosin alpha 0.141026 0.681529 2.513097 chr17-205 chr17 59040819 59040975 + 40.6 NA Intergenic (TTCTG)n|Simple_repeat|Simple_repeat -342244 NM_026497 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 0.012821 0.439490 -6.354461 chr14-90 chr14 64342306 64342462 + 40.6 NA intron (NM_199029, intron 3 of 9) intron (NM_199029, intron 3 of 9) 29599 NM_199029 380912 Mm.270087 NM_199029 Zfp395 BC053701|Gm910|MGC60757 zinc finger protein 395 0.006410 0.356688 -1.124524 chr5-394 chr5 118150650 118150806 + 40.6 NA intron (NM_008712, intron 2 of 27) intron (NM_008712, intron 2 of 27) 22580 NM_008712 18125 Mm.442195 NM_008712 ENSMUSG00000029361 Nos1 2310005C01Rik|NO|NOS-I|Nos-1|bNOS|nNOS nitric oxide synthase 1, neuronal 0.012821 0.573248 -2.681479 chr16-158 chr16 52328104 52328260 + 40.6 NA intron (NM_009655, intron 1 of 15) intron (NM_009655, intron 1 of 15) 44163 NM_009655 11658 Mm.288282 NM_009655 ENSMUSG00000022636 Alcam AI853494|BEN|CD166|DM-GRASP|MGC27910|MuSC|SC1 activated leukocyte cell adhesion molecule 0.006410 0.388535 -3.579742 chr5-351 chr5 27486310 27486466 + 40.6 NA intron (NM_207282, intron 1 of 25) intron (NM_207282, intron 1 of 25) -106333 NM_001136060 13483 Mm.42078 NM_001136060 ENSMUSG00000061576 Dpp6 B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|MGC113720|Peplb|Rw dipeptidylpeptidase 6 0.012821 0.458599 -3.180853 chr9-315 chr9 111649856 111650012 + 40.6 NA Intergenic Intergenic -114829 NM_016853 20840 Mm.1414 NM_016853 ENSMUSG00000032502 Stac MGC130287|MGC130288 src homology three (SH3) and cysteine rich domain 0.006410 0.528662 -1.897693 chr5-401 chr5 127466131 127466287 + 40.6 NA Intergenic (CAGAA)n|Simple_repeat|Simple_repeat -64819 NM_175432 208213 Mm.479667 XM_915891 ENSMUSG00000034324 Tmem132c 2810482M11Rik|3230401P16|4632425D07Rik transmembrane protein 132C 0.000000 0.464968 1.023659 chr7-221 chr7 129820644 129820800 + 40.6 NA Intergenic Intergenic 237234 NM_010207 14183 Mm.16340 NM_010207 ENSMUSG00000030849 Fgfr2 AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFRTr|MGC102519|svs fibroblast growth factor receptor 2 0.000000 0.433121 4.832441 chr1-418 chr1 99728204 99728360 + 40.6 NA intron (NM_013626, intron 8 of 25) intron (NM_013626, intron 8 of 25) 127698 NM_026250 252876 Mm.86090 NM_026250 ENSMUSG00000026333 Gin1 4930429M06Rik|8430411H10Rik|Gin-1|MGC29171|Zh2c2 gypsy retrotransposon integrase 1 0.019231 0.375796 -3.053013 chr4-263 chr4 9671194 9671350 + 40.6 NA Intergenic (TCCTG)n|Simple_repeat|Simple_repeat -26459 NR_030693 320152 Mm.159946 NR_030693 4930412C18Rik 5730591J02Rik RIKEN cDNA 4930412C18 gene 0.000000 0.515924 0.822431 chr2-291 chr2 51552095 51552251 + 40.6 NA Intergenic RMER6B|LTR|ERVK 102654 NM_199158 387511 Mm.377918 NM_199158 ENSMUSG00000056115 Tas2r134 T2R134|Tas2r34 taste receptor, type 2, member 134 0.000000 0.286624 1.096717 chr7-216 chr7 117086375 117086531 + 40.6 NA Intergenic RMER6D|LTR|ERVK -85674 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.000000 0.420382 -3.812366 chr9-293 chr9 55497466 55497622 + 40.6 NA intron (NM_001081341, intron 24 of 32) intron (NM_001081341, intron 24 of 32) 158259 NM_027397 104360 Mm.273996 NM_027397 ENSMUSG00000032318 Isl2 3110001N10Rik|MGC171130 insulin related protein 2 (islet 2) 0.006410 0.375796 0.017327 chr14-86 chr14 47847978 47848134 + 40.6 NA Intergenic Intergenic 47233 NR_033783 66770 Mm.136954 NR_033783 4933429O19Rik 1700031B11Rik RIKEN cDNA 4933429O19 gene 0.006410 0.515924 -4.940961 chr1-434 chr1 158839736 158839892 + 40.6 NA Intergenic Intergenic -63511 NM_023884 78255 Mm.28376 NM_001159965 ENSMUSG00000026594 Ralgps2 1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161 Ral GEF with PH domain and SH3 binding motif 2 0.019231 0.496815 -7.361159 chr11-341 chr11 118868920 118869076 + 40.6 NA Intergenic Intergenic -11995 NM_013926 30951 Mm.99953 NM_013926 ENSMUSG00000025578 Cbx8 Pc3 chromobox homolog 8 (Drosophila Pc class) 0.006410 0.598726 -4.309811 chr6-218 chr6 92861849 92862005 + 40.6 NA intron (NM_175314, intron 1 of 29) intron (NM_175314, intron 1 of 29) 5018 NM_175314 101401 Mm.257557 NM_175314 Adamts9 1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9 0.012821 0.477707 0.162160 chr8-231 chr8 123429585 123429741 + 40.6 NA intron (NM_001145896, intron 1 of 15) intron (NM_001145896, intron 1 of 15) 6278 NM_001145896 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.006410 0.496815 -2.880719 chr13-190 chr13 103101701 103101857 + 40.6 NA Intergenic Intergenic -233305 NM_001077495 18708 Mm.259333 NM_001024955 ENSMUSG00000041417 Pik3r1 AA414921|C530050K14|PI3K|p50alpha|p55alpha|p85alpha phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) 0.012821 0.484076 -8.511492 chr4-266 chr4 15243402 15243558 + 40.6 NA Intergenic Intergenic 50514 NM_181401 100201 Mm.394111 NM_181401 ENSMUSG00000043252 Tmem64 9630015D15Rik|AI790744|AV300874 transmembrane protein 64 0.019231 0.541401 -3.672407 chr8-209 chr8 23656801 23656957 + 40.6 NA Intergenic L1_Mus4|LINE|L1 -1525 NM_027338 70160 Mm.474298 NM_027338 ENSMUSG00000031479 Vps36 1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45 vacuolar protein sorting 36 (yeast) 0.000000 0.414013 -4.645116 chr9-301 chr9 66810554 66810710 + 40.6 NA Intergenic Intergenic 32383 NM_001164252 22003 Mm.121878 NM_001164248 ENSMUSG00000032366 Tpm1 AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM tropomyosin 1, alpha 0.032051 0.477707 -4.091317 chr17-186 chr17 11655185 11655341 + 40.6 NA intron (NM_016694, intron 7 of 11) intron (NM_016694, intron 7 of 11) -307378 NM_026644 68262 Mm.258300 NM_026644 ENSMUSG00000023827 Agpat4 1500003P24Rik 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 0.000000 0.452229 -6.763342 chr4-328 chr4 148840207 148840363 + 40.6 NA intron (NM_173371, intron 1 of 4) intron (NM_173371, intron 1 of 4) 12538 NM_173371 100198 Mm.22183 NM_173371 ENSMUSG00000028980 H6pd AI785303|G6pd1|Gpd-1|Gpd1 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) 0.012821 0.490446 0.666867 chr5-345 chr5 17670533 17670689 + 40.6 NA Intergenic (CAGAA)n|Simple_repeat|Simple_repeat 196218 NM_001081143 242851 Mm.332230 NM_001081143 ENSMUSG00000028777 Gnat3 Ggust|Gtn guanine nucleotide binding protein, alpha transducing 3 0.006410 0.426752 -3.540225 chr3-244 chr3 118045331 118045487 + 40.6 NA Intergenic Intergenic -184469 NM_029655 76561 Mm.33824 NM_001190156 ENSMUSG00000028007 Snx7 2510028H01Rik|MGC107328 sorting nexin 7 0.006410 0.484076 -6.696984 chr12-257 chr12 74491933 74492089 + 40.6 NA Intergenic B4A|SINE|B4 -11867 NM_008856 18755 Mm.341677 NM_008856 ENSMUSG00000021108 Prkch Pkch protein kinase C, eta 0.006410 0.388535 -1.078918 chr12-253 chr12 71322975 71323131 + 40.6 NA Intergenic Intergenic -48705 NM_028339 72736 Mm.479585 NM_028339 ENSMUSG00000021072 Tmx1 2810425A04Rik|AI465319|Txndc1 thioredoxin-related transmembrane protein 1 0.012821 0.515924 -4.733533 chr9-320 chr9 120585205 120585361 + 40.6 NA Intergenic Intergenic 165070 NM_025974 67115 Mm.289810 NM_025974 ENSMUSG00000025794 Rpl14 3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14 ribosomal protein L14 0.012821 0.388535 1.545275 chr5-411 chr5 137936731 137936887 + 40.6 NA Intergenic MLT1F|LTR|MaLR -22328 NM_145566 231801 Mm.260869 NM_145566 ENSMUSG00000029722 Agfg2 A630095P14Rik|Hrbl|MGC61203|MGC7148|RABR ArfGAP with FG repeats 2 0.025641 0.573248 -1.393260 chr17-195 chr17 30191381 30191537 + 40.6 NA intron (NM_027060, intron 6 of 10) intron (NM_027060, intron 6 of 10) -68267 NR_030688 623169 Mm.440508 XM_892956 Gm6402 EG623169 ribosomal protein S17 pseudogene 0.012821 0.535032 -1.538784 chr10-243 chr10 118011850 118012006 + 40.6 NA Intergenic Intergenic 167889 NM_008337 15978 Mm.240327 NM_008337 ENSMUSG00000055170 Ifng IFN-g|Ifg interferon gamma 0.000000 0.414013 2.226773 chr12-267 chr12 90223475 90223631 + 40.6 NA intron (NM_172544, intron 14 of 19) intron (NM_172544, intron 14 of 19) 756685 NM_172544 18191 Mm.477211 NM_172544 ENSMUSG00000066392 Nrxn3 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e neurexin III 0.012821 0.458599 -0.908613 chr8-236 chr8 127381774 127381930 + 40.6 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -25004 NM_029746 76332 Mm.240108 NM_029746 ENSMUSG00000031979 Cog2 1190002B08Rik|2700012E02Rik|C86089|Ldlc component of oligomeric golgi complex 2 0.044872 0.579618 -8.158869 chr5-349 chr5 25390402 25390558 + 40.6 NA Intergenic Intergenic 120390 NM_001004365 242894 Mm.150319 NM_001004365 ENSMUSG00000056367 Actr3b 9630005C02|ARP11|AW047569|Arp3b|Arp3beta|MGC91290 ARP3 actin-related protein 3 homolog B (yeast) 0.006410 0.452229 0.582942 chr19-97 chr19 58749723 58749879 + 40.6 NA Intergenic Intergenic 26187 NM_026925 69060 Mm.20407 NM_026925 ENSMUSG00000046008 Pnlip 1810007A24Rik|MGC74173|PTL pancreatic lipase 0.012821 0.445860 -2.839999 chr7-230 chr7 140759402 140759558 + 40.6 NA TTS (NR_015583) TTS (NR_015583) 2097 NR_015583 212965 Mm.387212 NR_015583 BC024386 BC039766 cDNA sequence BC023486 0.006410 0.471338 0.997540 chr13-161 chr13 23872360 23872516 + 40.6 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -5299 NM_009198 20504 Mm.2656 NM_001170638 ENSMUSG00000021335 Slc17a1 NAPI-1|Napi1|Npt1 solute carrier family 17 (sodium phosphate), member 1 0.025641 0.452229 0.138211 chr3-223 chr3 66891016 66891172 + 40.6 NA Intergenic Intergenic 178606 NM_013665 20429 Mm.39093 NM_013665 ENSMUSG00000027833 Shox2 6330543G17Rik|OG12|Og12x|Prx3|SHOT short stature homeobox 2 0.025641 0.490446 2.239527 chr6-197 chr6 6100488 6100644 + 40.6 NA intron (NM_001177572, intron 4 of 17) intron (NM_001177572, intron 4 of 17) 66607 NM_015829 50799 Mm.24513 NM_001177572 ENSMUSG00000015112 Slc25a13 AI785475|Ctrn solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 0.006410 0.420382 -5.997696 chr13-183 chr13 76009726 76009882 + 40.6 NA Intergenic Intergenic -101243 NR_030451 751556 NR_030451 Mir682 Mirn682|mir-682|mmu-mir-682 microRNA 682 0.012821 0.433121 -9.288146 chr10-216 chr10 41935962 41936118 + 40.6 NA intron (NM_019740, intron 2 of 3) intron (NM_019740, intron 2 of 3) 29117 NM_019740 56484 Mm.466459 NM_019740 ENSMUSG00000048756 Foxo3 1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a forkhead box O3 0.025641 0.585987 -0.564803 chr3-242 chr3 108235879 108236035 + 40.6 NA 3' UTR (NM_010306, exon 9 of 9) 3' UTR (NM_010306, exon 9 of 9) 14834 NM_008141 14686 Mm.439652 NM_008141 ENSMUSG00000009108 Gnat2 AW490837|Gnat-2|Gt-2|Tcalpha guanine nucleotide binding protein, alpha transducing 2 0.012821 0.407643 -1.210941 chr10-223 chr10 66683453 66683609 + 40.6 NA Intergenic Intergenic -2893 NM_001036293 641340 Mm.380601 NM_001036293 ENSMUSG00000075000 Nrbf2 NRBF-2 nuclear receptor binding factor 2 0.000000 0.592357 -6.277307 chr19-76 chr19 5060531 5060687 + 40.6 NA Intergenic Intergenic -7468 NM_054042 70445 Mm.29597 NM_054042 ENSMUSG00000056481 Cd248 2610111G01Rik|AI842296|Cd164l1|Tem1 CD248 antigen, endosialin 0.006410 0.535032 -3.778296 chr9-270 chr9 13499501 13499657 + 40.6 NA promoter-TSS (NM_023858) promoter-TSS (NM_023858) 2 NR_024025 77116 Mm.210405 NM_023858 ENSMUSG00000031918 Mtmr2 6030445P13Rik myotubularin related protein 2 0.141026 0.770701 -6.809165 chr2-280 chr2 29319743 29319899 + 40.6 NA intron (NM_026896, intron 4 of 7) intron (NM_026896, intron 4 of 7) -121907 NM_054050 107746 Mm.298274 NM_001039086 ENSMUSG00000039844 Rapgef1 4932418O06Rik|C3G|Grf2 Rap guanine nucleotide exchange factor (GEF) 1 0.000000 0.484076 -1.865705 chr12-244 chr12 46351678 46351834 + 40.6 NA Intergenic Intergenic -406987 NM_144552 217517 Mm.285400 NM_144552 ENSMUSG00000046314 Stxbp6 BC024598|C85317|MGC30948 syntaxin binding protein 6 (amisyn) 0.000000 0.554140 -5.957417 chr4-314 chr4 124861052 124861208 + 40.6 NA Intergenic Intergenic -132004 NM_001081097 14807 Mm.40896 NM_001081097 ENSMUSG00000001985 Grik3 9630027E11|GluR7-3|Glur-7|Glur7 glutamate receptor, ionotropic, kainate 3 0.025641 0.445860 5.498111 chr19-82 chr19 28502572 28502728 + 40.6 NA intron (NM_175459, intron 4 of 10) intron (NM_175459, intron 4 of 10) 243424 NM_175459 226075 Mm.459186 NM_175459 ENSMUSG00000052942 Glis3 4833409N03Rik|E230012L24|E330013K21Rik GLIS family zinc finger 3 0.019231 0.573248 -2.312091 chr13-179 chr13 60375741 60375897 + 40.6 NA Intergenic Intergenic 160726 NR_036449 328264 Mm.38101 NM_177810 ENSMUSG00000050765 Gm5084 A030007L22|EG328264 predicted gene 5084 0.000000 0.337580 2.646393 chr2-334 chr2 160024106 160024262 + 40.6 NA Intergenic Intergenic -5249 NM_001033411 329554 Mm.291144 NM_001033411 ENSMUSG00000074623 Gm826 - predicted gene 826 0.025641 0.541401 0.112443 chr8-224 chr8 114803085 114803241 + 40.6 NA intron (NM_001033321, intron 4 of 6) intron (NM_001033321, intron 4 of 6) -6291 NM_019950 56773 Mm.432506 NM_019950 ENSMUSG00000031952 Chst5 AI173964|GST-4|Gn6st-3|I-GlcNAc-6-ST carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 0.000000 0.388535 -7.885255 chr11-325 chr11 102208631 102208787 + 40.6 NA promoter-TSS (NM_016759) promoter-TSS (NM_016759) -815 NM_016759 51799 Mm.2560 NM_016759 ENSMUSG00000006575 Rundc3a RPIP-8|Rap2ip|Rpip8 RUN domain containing 3A 0.025641 0.452229 1.434058 chr11-312 chr11 81052197 81052353 + 40.6 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) -83177 NM_007384 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.006410 0.471338 2.819742 chr1-436 chr1 161898134 161898290 + 40.6 NA intron (NR_028111, intron 1 of 2) intron (NR_028111, intron 1 of 2) 17156 NM_001162896 67647 Mm.171518 NM_001162896 4930523C07Rik - RIKEN cDNA 4930523C07 gene 0.012821 0.484076 5.983573 chr1-427 chr1 135883538 135883694 + 40.6 NA Intergenic Intergenic 11950 NM_007570 12227 Mm.392646 NM_007570 ENSMUSG00000020423 Btg2 AA959598|APRO1|Pc3|TIS21 B-cell translocation gene 2, anti-proliferative 0.012821 0.528662 -6.355753 chr7-218 chr7 124088250 124088406 + 40.6 NA Intergenic Intergenic -796731 NM_001081329 210162 Mm.135397 NM_001081329 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 0.006410 0.445860 0.430226 chr1-448 chr1 180426450 180426606 + 40.6 NA intron (NM_001161665, intron 2 of 14) intron (NM_001161665, intron 2 of 14) 60729 NM_001161665 269152 Mm.138659 NM_001161665 ENSMUSG00000026494 Kif26b 4832420M10|BC056349|D230039L06Rik|MGC156028|MGC169313 kinesin family member 26B 0.012821 0.369427 4.296466 chr1-452 chr1 187280700 187280856 + 40.6 NA Intergenic L1M2|LINE|L1 82685 NR_033600 114668 Mm.379303 NR_033600 5033404E19Rik - RIKEN cDNA 5033404E19 gene 0.000000 0.363057 -1.150701 chr5-344 chr5 15715423 15715579 + 40.6 NA intron (NM_001110844, intron 5 of 38) intron (NM_001110844, intron 5 of 38) 268987 NM_001110846 12293 Mm.159842 NM_001110843 ENSMUSG00000040118 Cacna2d1 Cacna2|Cchl2a|MGC141430 calcium channel, voltage-dependent, alpha2/delta subunit 1 0.019231 0.433121 2.635792 chr5-368 chr5 72634239 72634395 + 40.6 NA intron (NM_001122756, intron 9 of 21) intron (NM_001122756, intron 9 of 21) 149026 NM_016869 53419 Mm.332425 NM_001122756 ENSMUSG00000005220 Corin AV273130|Lrp4|MGC118735 corin 0.006410 0.490446 -1.698981 chr12-282 chr12 119075003 119075159 + 40.6 NA Intergenic Intergenic -215349 NM_177082 320145 Mm.51682 NM_177082 ENSMUSG00000048562 Sp8 D930049B17Rik|MGC105193|mBtd trans-acting transcription factor 8 0.006410 0.414013 0.207766 chr1-426 chr1 134521743 134521899 + 40.6 NA intron (NM_182716, intron 1 of 29) intron (NM_182716, intron 1 of 29) 13051 NM_001160318 269116 Mm.326702 NM_001160316 ENSMUSG00000026442 Nfasc AA387016|D430023G06Rik|NF|mKIAA0756 neurofascin 0.019231 0.598726 -3.664842 chr1-393 chr1 65113466 65113526 + 40.6 NA promoter-TSS (NM_010497) promoter-TSS (NM_010497) -78 NM_010497 15926 Mm.9925 NM_001111320 ENSMUSG00000025950 Idh1 AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc|MGC115782 isocitrate dehydrogenase 1 (NADP+), soluble 0.050000 0.557377 -5.342325 chr7-219 chr7 126269042 126269198 + 40.6 NA Intergenic Intergenic -2842 NM_011363 20399 Mm.8538 NM_001081459 ENSMUSG00000030733 Sh2b1 AI425885|C530001K22Rik|Irip|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299 SH2B adaptor protein 1 0.012821 0.477707 -1.405349 chr14-85 chr14 33466982 33467138 + 40.6 NA Intergenic (CAGAA)n|Simple_repeat|Simple_repeat -35959 NM_001004436 218914 Mm.27957 NM_001004436 ENSMUSG00000041408 Wapal 2410073G16|A530089A20Rik|BC037674|FOE|KIAA0261|mKIAA0261|mWAPL wings apart-like homolog (Drosophila) 0.000000 0.369427 9.523693 chr7-226 chr7 132726322 132726478 + 40.6 NA Intergenic MTE2a|LTR|MaLR 28833 NM_198017 109359 Mm.274824 NM_198017 ENSMUSG00000030965 Fam175b AA589499|AI853413|Abro1|C430003P19Rik family with sequence similarity 175, member B 0.006410 0.407643 -4.482163 chr2-305 chr2 77212189 77212345 + 40.6 NA 3' UTR (NM_001113399, exon 8 of 8) 3' UTR (NM_001113399, exon 8 of 8) 108238 NM_001113400 241494 Mm.453232 NM_001113399 ENSMUSG00000027016 Zfp385b B830010L13Rik|C130013B13Rik|Zfp533|Znf385b zinc finger protein 385B 0.044872 0.458599 -6.046501 chr5-398 chr5 122961598 122961754 + 40.6 NA Intergenic Intergenic -6497 NM_011026 18438 Mm.463383 NM_011026 ENSMUSG00000029470 P2rx4 AI504491|AW555605|D5Ertd444e|P2X4 purinergic receptor P2X, ligand-gated ion channel 4 0.006410 0.388535 -6.052372 chr7-229 chr7 140022918 140023074 + 40.6 NA Intergenic Intergenic -4427 NM_146518 258511 Mm.334306 NM_146518 ENSMUSG00000051051 Olfr523 MOR104-4 olfactory receptor 523 0.000000 0.445860 -3.334166 chr11-292 chr11 5918669 5918825 + 40.6 NA intron (NM_007595, intron 2 of 20) intron (NM_007595, intron 2 of 20) 47004 NM_001174054 12323 Mm.439733 NM_001174053 ENSMUSG00000057897 Camk2b Camk2d|MGC90738 calcium/calmodulin-dependent protein kinase II, beta 0.019231 0.617834 -7.992782 chr9-289 chr9 51278282 51278438 + 40.6 NA Intergenic Intergenic -197213 NM_027217 69809 Mm.75315 XM_134800 ENSMUSG00000036027 1810046K07Rik - RIKEN cDNA 1810046K07 gene 0.006410 0.477707 -0.442108 chr3-249 chr3 126318264 126318420 + 40.6 NA Intergenic Intergenic -37531 NM_173451 271970 Mm.317021 NM_173451 ENSMUSG00000046561 Arsj 9330196J05Rik|D830047F08 arylsulfatase J 0.012821 0.350318 -2.344951 chr1-419 chr1 120568899 120569055 + 40.6 NA Intergenic Intergenic 113487 NM_023755 81879 Mm.24621 NM_023755 ENSMUSG00000026380 Tcfcp2l1 1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9 transcription factor CP2-like 1 0.025641 0.573248 1.596371 chr12-258 chr12 79858657 79858813 + 40.6 NA Intergenic Intergenic -32957 NM_013738 27260 Mm.103380 NM_013738 ENSMUSG00000021118 Plek2 - pleckstrin 2 0.019231 0.477707 -1.298702 chr3-264 chr3 156701505 156701661 + 40.6 NA intron (NM_001039094, intron 1 of 6) intron (NM_001039094, intron 1 of 6) 204332 NM_177274 320840 Mm.317293 NM_001039094 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra|mKIAA3001 neuronal growth regulator 1 0.006410 0.452229 -2.261679 chr2-310 chr2 101719485 101719641 + 40.6 NA Intergenic Intergenic 32463 NM_029635 76501 Mm.330424 NM_029635 ENSMUSG00000027163 Commd9 1810029F08Rik|AA409293 COMM domain containing 9 0.012821 0.560510 -3.875429 chr9-309 chr9 102844221 102844377 + 40.6 NA Intergenic Intergenic -22339 NM_033314 24059 Mm.412758 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2|mPgt solute carrier organic anion transporter family, member 2a1 0.012821 0.471338 -3.748510 chr17-211 chr17 71578019 71578175 + 40.6 NA promoter-TSS (NM_177087) promoter-TSS (NM_177087) -20 NM_177087 320159 Mm.187372 NM_177087 ENSMUSG00000045761 Fam179a 4632412N22Rik family with sequence similarity 179, member A 0.025641 0.573248 -3.655688 chr2-329 chr2 152051282 152051438 + 40.6 NA intron (NR_033505, intron 1 of 4) intron (NR_033505, intron 1 of 4) 14251 NR_033505 791417 Mm.451219 NR_033505 Gm14164 OTTMUSG00000015846 predicted gene 14164 0.012821 0.560510 0.134572 chr18-143 chr18 12770044 12770200 + 40.6 NA Intergenic Intergenic -16579 NM_028341 72747 Mm.52526 NM_028341 ENSMUSG00000024424 Ttc39c 1700008N02Rik|2810439F02Rik tetratricopeptide repeat domain 39C 0.019231 0.458599 5.342546 chr3-211 chr3 20853013 20853169 + 40.6 NA Intergenic Intergenic -294841 NM_175086 11608 Mm.134863 NM_175086 ENSMUSG00000054988 Agtr1b AT1B|AT2R1B|Agtr-1b|Angtr-1b|MGC129325 angiotensin II receptor, type 1b 0.000000 0.458599 -3.534957 chr3-224 chr3 67104104 67104260 + 40.6 NA intron (NM_025822, intron 3 of 9) intron (NM_025822, intron 3 of 9) 30582 NM_025822 66880 Mm.316418 NM_025822 ENSMUSG00000034544 Rsrc1 1200013F24Rik|MGC103357|SRrp53 arginine/serine-rich coiled-coil 1 0.000000 0.369427 -1.590797 chr2-303 chr2 74702841 74702997 + 40.6 NA Intergenic Intergenic 76269 NM_016804 53375 Mm.478750 NM_016804 ENSMUSG00000027099 Mtx2 1500012G02Rik metaxin 2 0.006410 0.484076 6.473382 chr14-88 chr14 57207877 57208033 + 40.6 NA Intergenic Intergenic 181160 NM_013518 14180 Mm.8846 NM_013518 ENSMUSG00000021974 Fgf9 Eks fibroblast growth factor 9 0.000000 0.535032 -4.290055 chr13-174 chr13 51897282 51897438 + 40.6 NA Intergenic Intergenic 38190 NM_011817 23882 Mm.281298 NM_011817 ENSMUSG00000021453 Gadd45g AI327420|C86281|CR6|DDIT2|OIG37 growth arrest and DNA-damage-inducible 45 gamma 0.000000 0.407643 -2.651960 chr8-230 chr8 123387005 123387161 + 40.6 NA intron (NM_198671, intron 1 of 15) intron (NM_198671, intron 1 of 15) 12241 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.019231 0.636943 -3.501425 chr9-275 chr9 21176606 21176762 + 40.6 NA intron (NM_001039520, intron 1 of 20) intron (NM_001039520, intron 1 of 20) 1338 NM_001039520 13430 Mm.433257 NM_001039520 ENSMUSG00000033335 Dnm2 Dyn2 dynamin 2 0.006410 0.503185 -2.972178 chr4-334 chr4 152614870 152615026 + 40.6 NA Intergenic Intergenic -186088 NM_175287 97159 Mm.7066 NM_001163019 ENSMUSG00000047613 A430005L14Rik C79672 RIKEN cDNA A430005L14 gene 0.025641 0.375796 -1.078917 chr1-376 chr1 36379992 36380148 + 40.6 NA intron (NM_001013374, intron 4 of 7) intron (NM_001013374, intron 4 of 7) 9715 NM_001013374 214895 Mm.287854 NM_001013374 ENSMUSG00000001143 Lman2l A630028F14Rik|DKFZp564L2423|VIP36-like|VIPL lectin, mannose-binding 2-like 0.006410 0.414013 -1.078768 chr4-298 chr4 103546435 103546591 + 40.6 NA Intergenic L1MEc|LINE|L1 -318978 NM_010014 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled homolog 1 (Drosophila) 0.006410 0.388535 -5.747794 chr3-237 chr3 101849252 101849408 + 40.6 NA Intergenic Lx8|LINE|L1 -115612 NM_144900 11928 Mm.280103 NM_144900 ENSMUSG00000033161 Atp1a1 Atpa-1|BC010319|MGC38419 ATPase, Na+/K+ transporting, alpha 1 polypeptide 0.006410 0.464968 -1.865705 chr8-225 chr8 118787233 118787389 + 40.6 NA Intergenic Intergenic -194440 NM_001025577 17132 Mm.439772 NM_001025577 ENSMUSG00000055435 Maf 2810401A20Rik|A230108G15Rik|AW047063|c-maf avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog 0.006410 0.477707 4.009783 chr11-324 chr11 101100044 101100200 + 40.6 NA intron (NM_026562, intron 3 of 6) intron (NM_026562, intron 3 of 6) 4830 NM_026562 68107 Mm.262369 NM_026562 ENSMUSG00000078653 Cntd1 1700051C09Rik|4921513J16Rik|5430417M23Rik|Cntd|MGC11788 cyclin N-terminal domain containing 1 0.006410 0.433121 -1.251510 chr3-256 chr3 139855371 139855527 + 40.6 NA Intergenic Intergenic 712170 NM_198659 381476 Mm.188334 NM_198659 ENSMUSG00000047940 B930007M17Rik Gm1017 RIKEN cDNA B930007M17 gene 0.000000 0.394904 -2.021225 chr3-251 chr3 128446544 128446700 + 40.6 NA Intergenic Intergenic -558277 NM_027482 70617 Mm.317049 NM_027482 ENSMUSG00000050549 5730508B09Rik 2700063A17Rik|C80506|MGC151168|MGC151170 RIKEN cDNA 5730508B09 gene 0.000000 0.414013 -2.821774 chr1-417 chr1 99630415 99630571 + 40.6 NA Intergenic RMER6C|LTR|ERVK 29909 NM_026250 252876 Mm.86090 NM_026250 ENSMUSG00000026333 Gin1 4930429M06Rik|8430411H10Rik|Gin-1|MGC29171|Zh2c2 gypsy retrotransposon integrase 1 0.000000 0.433121 -3.812366 chr1-439 chr1 166654131 166654287 + 40.6 NA intron (NM_019759, intron 2 of 3) intron (NM_019759, intron 2 of 3) 20803 NM_019759 56429 Mm.28935 NM_019759 ENSMUSG00000026574 Dpt 1810032B19Rik|5033416F05Rik|EQ-1|Eq1 dermatopontin 0.000000 0.401274 -3.157514 chr17-192 chr17 28395275 28395431 + 40.6 NA Intergenic Intergenic -23577 NM_001168508 26416 Mm.311337 NM_001168508 ENSMUSG00000053436 Mapk14 CSBP2|Crk1|Csbp1|MGC102436|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha mitogen-activated protein kinase 14 0.012821 0.496815 -2.032000 chr13-182 chr13 73266738 73266894 + 40.6 NA Intergenic Intergenic 171341 NM_010574 16372 Mm.28888 NM_010574 ENSMUSG00000001504 Irx2 IRX6|MGC103290 Iroquois related homeobox 2 (Drosophila) 0.006410 0.382166 -2.923509 chr4-301 chr4 105997605 105997761 + 40.6 NA Intergenic Intergenic -7508 NM_080458 140475 Mm.135448 NM_080458 ENSMUSG00000025418 Bsnd MGC47291 Bartter syndrome, infantile, with sensorineural deafness (Barttin) 0.012821 0.503185 -3.875330 chr3-221 chr3 60256643 60256799 + 40.6 NA Intergenic Intergenic 86924 NM_032400 84112 Mm.125110 NM_032400 ENSMUSG00000027762 Sucnr1 Gpr91 succinate receptor 1 0.000000 0.369427 -7.576180 chr1-398 chr1 74330661 74330817 + 40.6 NA TTS (NM_153088) TTS (NM_153088) 3223 NR_029743 387219 NR_029743 Mir26b Mirn26b|mmu-mir-26b microRNA 26b 0.083333 0.681529 -1.644711 chr7-200 chr7 98749829 98749985 + 40.6 NA Intergenic Intergenic 35871 NM_009519 22411 Mm.22182 NM_009519 ENSMUSG00000015957 Wnt11 - wingless-related MMTV integration site 11 0.012821 0.515924 0.133607 chr15-163 chr15 76951797 76951953 + 40.6 NA intron (NM_001110829, intron 2 of 12) intron (NM_001110829, intron 2 of 12) 29192 NM_001110830 93686 Mm.202774 NM_001110827 ENSMUSG00000033565 Rbm9 2810460A15Rik|AA407676|AI118529|Fbm2|Fxh|Hrnbp2 RNA binding motif protein 9 0.012821 0.464968 -0.655057 chr10-205 chr10 13137256 13137412 + 40.6 NA Intergenic Intergenic -53891 NM_025799 66848 Mm.26625 NM_025799 ENSMUSG00000019810 Fuca2 0610025O11Rik|5530401P20Rik fucosidase, alpha-L- 2, plasma 0.006410 0.496815 1.330818 chr4-311 chr4 119113276 119113432 + 40.6 NA intron (NM_172699, intron 6 of 12) intron (NM_172699, intron 6 of 12) -22309 NM_008190 14915 Mm.2614 NM_008190 ENSMUSG00000023247 Guca2a Guca2 guanylate cyclase activator 2a (guanylin) 0.012821 0.414013 0.716585 chr19-81 chr19 24410056 24410212 + 40.6 NA intron (NM_008846, intron 13 of 14) intron (NM_008846, intron 13 of 14) -62451 NM_008044 14297 Mm.7319 NM_008044 ENSMUSG00000059363 Fxn FA|FARR|Frda|X25 frataxin 0.006410 0.350318 0.610530 chr4-281 chr4 81051011 81051167 + 40.6 NA Intergenic Intergenic -137053 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.006410 0.471338 -2.768674 chr4-321 chr4 137267503 137267659 + 40.6 NA intron (NM_172703, intron 2 of 34) intron (NM_172703, intron 2 of 34) 2036 NM_172703 230861 Mm.268903 NM_172703 ENSMUSG00000028760 Eif4g3 1500002J22Rik|4833436O05|4930523M17Rik|G1-419-52|eIF4GII|repro8 eukaryotic translation initiation factor 4 gamma, 3 0.025641 0.452229 -2.311781 chr5-346 chr5 20903488 20903644 + 40.6 NA intron (NM_029195, intron 2 of 18) intron (NM_029195, intron 2 of 18) 19070 NM_008013 14190 Mm.292100 NM_008013 ENSMUSG00000039899 Fgl2 AI385601|musfiblp fibrinogen-like protein 2 0.025641 0.541401 -5.126793 chr18-150 chr18 36013664 36013820 + 40.6 NA Intergenic Intergenic 57951 NM_133687 67393 Mm.94560 NM_133687 ENSMUSG00000046668 Cxxc5 4930415K17Rik|MGC101987 CXXC finger 5 0.096154 0.726115 -8.955066 chr6-220 chr6 94744372 94744528 + 40.6 NA Intergenic Intergenic -78842 NM_008377 16206 Mm.245210 NM_008377 ENSMUSG00000030029 Lrig1 D6Bwg0781e|Img|LIG-1 leucine-rich repeats and immunoglobulin-like domains 1 0.006410 0.490446 0.076849 chr16-144 chr16 22369433 22369589 + 40.6 NA Intergenic Charlie5|DNA|MER1_type -14685 NM_023794 104156 Mm.155708 NM_023794 ENSMUSG00000013089 Etv5 1110005E01Rik|8430401F14Rik|ERM ets variant gene 5 0.000000 0.305732 -1.043733 chr17-199 chr17 40660626 40660782 + 40.6 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 262536 NM_008650 17850 Mm.259884 NM_008650 ENSMUSG00000023921 Mut D230010K02Rik|Mcm methylmalonyl-Coenzyme A mutase 0.006410 0.458599 -2.927620 chr2-286 chr2 44471704 44471860 + 40.6 NA intron (NM_172662, intron 5 of 10) intron (NM_172662, intron 5 of 10) 211849 NM_172662 227835 Mm.446613 NM_172662 ENSMUSG00000036890 Gtdc1 E330008O22Rik glycosyltransferase-like domain containing 1 0.012821 0.394904 0.497530 chr8-228 chr8 122726349 122726505 + 40.6 NA 5' UTR (NM_028071, exon 1 of 4) 5' UTR (NM_028071, exon 1 of 4) 129 NM_028071 72042 Mm.393405 NM_028071 ENSMUSG00000031827 Cotl1 1810074P22Rik|2010004C08Rik|Clp coactosin-like 1 (Dictyostelium) 0.108974 0.662420 -5.867703 chr7-196 chr7 81746011 81746167 + 40.6 NA intron (NM_145375, intron 6 of 9) intron (NM_145375, intron 6 of 9) 13555 NM_145375 107769 Mm.392934 NM_145375 ENSMUSG00000038623 Tm6sf1 AI428514|BC023123|C630016D09Rik|MGC25583 transmembrane 6 superfamily member 1 0.019231 0.394904 -4.798963 chr16-169 chr16 93403016 93403172 + 40.6 NA Intergenic Intergenic 89261 NM_145482 224440 Mm.10628 NM_145482 ENSMUSG00000022948 Setd4 AY037804|C21orf18|ORF21 SET domain containing 4 0.032051 0.528662 -4.424886 chr1-440 chr1 169083799 169083955 + 40.6 NA intron (NM_030724, intron 1 of 6) intron (NM_030724, intron 1 of 6) 37925 NM_030724 80914 Mm.440156 NM_030724 ENSMUSG00000026558 Uck2 AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk uridine-cytidine kinase 2 0.025641 0.477707 -0.294549 chr5-405 chr5 132553907 132554063 + 40.6 NA intron (NM_177047, intron 1 of 18) intron (NM_177047, intron 1 of 18) 273061 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.019231 0.414013 -7.014261 chr18-157 chr18 55208056 55208212 + 40.6 NA Intergenic Intergenic -92585 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.032051 0.515924 3.696309 chr9-322 chr9 121480781 121480937 + 40.6 NA intron (NM_026915, intron 1 of 5) intron (NM_026915, intron 1 of 5) 9405 NM_026915 69032 Mm.33351 NM_026915 ENSMUSG00000032530 Lyzl4 1810009N24Rik|AI504271|Lyc4 lysozyme-like 4 0.012821 0.541401 -6.036603 chr15-147 chr15 31843013 31843169 + 40.6 NA Intergenic Intergenic -278786 NM_020503 57254 Mm.377133 NM_020503 ENSMUSG00000045267 Tas2r119 T2r19|Tas2r19|mGR19|mt2r19 taste receptor, type 2, member 119 0.006410 0.369427 1.436034 chr8-239 chr8 128491131 128491287 + 40.6 NA intron (NR_015535, intron 2 of 2) intron (NR_015535, intron 2 of 2) 20482 NR_015535 75930 Mm.234080 NR_015535 4930567H12Rik 4930579P07Rik RIKEN cDNA 4930567H12 gene 0.019231 0.484076 -2.084324 chr10-242 chr10 98171172 98171328 + 40.6 NA Intergenic Intergenic -173589 NM_026482 67972 Mm.471912 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 ATPase, Ca++ transporting, plasma membrane 1 0.012821 0.496815 -3.812366 chr11-318 chr11 93512627 93512783 + 40.6 NA Intergenic Intergenic 189151 NM_001013375 217109 Mm.379350 NM_001013375 ENSMUSG00000054079 Utp18 6230425C22Rik|6430513M13|MGC141453|MGC141454|Wdr50 UTP18, small subunit (SSU) processome component, homolog (yeast) 0.019231 0.503185 -3.890718 chr2-270 chr2 7211996 7212152 + 40.6 NA intron (NM_001110231, intron 2 of 15) intron (NM_001110231, intron 2 of 15) 101779 NM_001110232 14007 Mm.411896 NM_001110228 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 0.019231 0.375796 -0.072276 chr9-303 chr9 75196018 75196174 + 40.6 NA promoter-TSS (NM_015806) promoter-TSS (NM_015806) -173 NM_015806 50772 Mm.18856 NM_015806 ENSMUSG00000042688 Mapk6 2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6 mitogen-activated protein kinase 6 0.128205 0.713376 2.613551 chr2-323 chr2 138281927 138282083 + 40.6 NA Intergenic L1M3|LINE|L1 -229364 NR_035477 100316816 NR_035477 Mir1952 mmu-mir-1952 microRNA mir-1952 0.000000 0.433121 -1.644711 chr17-213 chr17 81337580 81337736 + 40.6 NA intron (NM_011406, intron 8 of 10) intron (NM_011406, intron 8 of 10) 309045 NM_001112798 20541 Mm.265834 NM_001112798 ENSMUSG00000054640 Slc8a1 AI852629|AV344025|D930008O12Rik|MGC90693|Ncx1 solute carrier family 8 (sodium/calcium exchanger), member 1 0.012821 0.394904 -4.768936 chr15-159 chr15 71669219 71669375 + 40.6 NA intron (NM_027174, intron 49 of 63) intron (NM_027174, intron 49 of 63) -111790 NM_177819 70363 Mm.126450 NM_027401 Fam135b 1700010C24Rik|A830008O07Rik|MGC159348|MGC159350 family with sequence similarity 135, member B 0.006410 0.426752 3.336937 chr15-146 chr15 30839164 30839320 + 40.6 NA intron (NM_008729, intron 14 of 22) intron (NM_008729, intron 14 of 22) -329731 NM_146057 223453 Mm.222867 NM_146057 ENSMUSG00000039168 Dap 4921531N22Rik|AI789753|AU040360|MGC19154|MGC6998 death-associated protein 0.006410 0.382166 -2.821774 chr10-203 chr10 8824022 8824178 + 40.6 NA Intergenic Intergenic -247840 NM_175155 70097 Mm.338275 NM_175155 ENSMUSG00000015305 Sash1 1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790 SAM and SH3 domain containing 1 0.006410 0.407643 0.462786 chr5-347 chr5 22946000 22946156 + 40.6 NA promoter-TSS (NM_026984) promoter-TSS (NM_026984) -174 NM_026984 69188 Mm.403814 XM_893956 Mll5 1810033J14Rik|9530077A04Rik|D230038D11Rik|FLJ10078|Kmt2E myeloid/lymphoid or mixed-lineage leukemia 5 0.096154 0.662420 -2.930773 chr11-346 chr11 120508535 120508691 + 40.6 NA intron (NM_198223, intron 6 of 14) intron (NM_198223, intron 6 of 14) 15863 NM_001164224 68938 Mm.294020 NM_001164224 ENSMUSG00000025142 Aspscr1 1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG alveolar soft part sarcoma chromosome region, candidate 1 (human) 0.019231 0.509554 0.343752 chr2-313 chr2 113335458 113335614 + 40.6 NA intron (NM_001043322, intron 7 of 18) intron (NM_001043322, intron 7 of 18) 206962 NM_010230 14260 Mm.4938 NM_001043322 ENSMUSG00000044042 Fmn1 BB164513|Fmn|formin-1|ld formin 1 0.006410 0.471338 -4.901981 chr7-211 chr7 112435683 112435839 + 40.6 NA Intergenic Intergenic -34739 NM_001166584 21676 Mm.398985 NM_001166584 ENSMUSG00000055320 Tead1 2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1 TEA domain family member 1 0.019231 0.509554 5.236701 chr2-311 chr2 104859606 104859762 + 40.6 NA Intergenic Intergenic -41818 NM_145380 98221 Mm.379278 NM_145380 ENSMUSG00000027170 Eif3m Ga17|MGC118449|Pcid1 eukaryotic translation initiation factor 3, subunit M 0.012821 0.490446 -1.974366 chr2-289 chr2 49638102 49638258 + 40.6 NA intron (NM_027990, intron 1 of 9) intron (NM_027990, intron 1 of 9) 28486 NM_027990 71897 Mm.41381 NM_027990 ENSMUSG00000026765 Lypd6b 2310010M24Rik|AW049525|MGC143485 LY6/PLAUR domain containing 6B 0.006410 0.382166 -0.802767 chr9-269 chr9 9641789 9641945 + 40.6 NA intron (NM_001170787, intron 21 of 24) intron (NM_001170787, intron 21 of 24) -441012 NM_027823 71544 Mm.334955 XM_146632 Arhgap42 9030420J04Rik|BE136619 Rho GTPase activating protein 42 0.000000 0.350318 -2.838744 chr11-338 chr11 115107111 115107267 + 40.6 NA intron (NM_178035, intron 2 of 5) intron (NM_178035, intron 2 of 5) 6447 NM_178035 328035 Mm.21995 NM_178035 ENSMUSG00000044788 Fads6 BC044804|OTTMUSG00000021749 fatty acid desaturase domain family, member 6 0.025641 0.503185 -4.237732 chr17-208 chr17 63809704 63809860 + 40.6 NA intron (NM_001037997, intron 15 of 17) intron (NM_001037997, intron 15 of 17) 186582 NM_008000 14158 Mm.23039 NM_001037997 ENSMUSG00000000127 Fert2 AV082135|C330004K01Rik|Fer|Fert fer (fms/fps related) protein kinase, testis specific 2 0.000000 0.394904 -4.987056 chr12-255 chr12 73352151 73352307 + 40.6 NA Intergenic Intergenic -8474 NM_001142728 78257 Mm.266280 NM_001142728 ENSMUSG00000021090 Lrrc9 4921529O18Rik|4930432K16Rik leucine rich repeat containing 9 0.000000 0.439490 -0.215356 chr18-146 chr18 30662068 30662224 + 40.6 NA Intergenic RLTR25A|LTR|ERVK 246241 NM_181414 225326 Mm.194127 NM_181414 ENSMUSG00000033628 Pik3c3 5330434F23Rik|Vps34 phosphoinositide-3-kinase, class 3 0.006410 0.414013 -2.424863 chr1-416 chr1 94497627 94497783 + 40.6 NA Intergenic Intergenic -18458 NM_153114 260301 Mm.219545 NM_153114 ENSMUSG00000044055 Otos OTOSP otospiralin 0.012821 0.547771 -3.874220 chr5-357 chr5 51456489 51456645 + 40.6 NA Intergenic Intergenic 385602 NR_027710 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|PGC-1|PGC-1v|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 0.012821 0.394904 -1.098732 chr13-165 chr13 30712104 30712260 + 40.6 NA intron (NM_001037955, intron 4 of 6) intron (NM_001037955, intron 4 of 6) -44540 NM_013674 16364 Mm.4677 NM_013674 ENSMUSG00000021356 Irf4 AI385587|IRF-4|LSIRF|Spip interferon regulatory factor 4 0.012821 0.496815 -2.606268 chr8-240 chr8 129559532 129559688 + 40.6 NA Intergenic Intergenic -80084 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.019231 0.554140 -2.390134 chr18-159 chr18 62377602 62377758 + 40.6 NA Intergenic L1_Rod|LINE|L1 -71892 NM_008313 15562 Mm.20440 NM_008313 ENSMUSG00000026322 Htr4 5-HT4|5-HT<4L> 5 hydroxytryptamine (serotonin) receptor 4 0.012821 0.414013 -2.522100 chr4-310 chr4 117717363 117717519 + 40.6 NA intron (NM_011213, intron 21 of 32) intron (NM_011213, intron 21 of 32) -39466 NM_172382 230674 Mm.234234 NM_001161823 ENSMUSG00000033326 Kdm4a D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|MGC28562|mKIAA0677 lysine (K)-specific demethylase 4A 0.000000 0.433121 -2.152221 chr8-210 chr8 26876593 26876749 + 40.6 NA Intergenic (GA)n|Simple_repeat|Simple_repeat -107645 NM_001079909 14182 Mm.265716 NM_001079908 ENSMUSG00000031565 Fgfr1 AW208770|FLG|Fgfr-1|Flt-2 fibroblast growth factor receptor 1 0.006410 0.522293 -2.603060 chr9-290 chr9 52131731 52131887 + 40.6 NA Intergenic Intergenic -211333 NM_001162921 244871 Mm.390172 XM_146893 ENSMUSG00000035164 Zc3h12c A230108E06|C230027N18Rik|KIAA1726|mKIAA1726 zinc finger CCCH type containing 12C 0.012821 0.414013 6.049659 chr14-92 chr14 71749570 71749726 + 40.6 NA Intergenic Intergenic -11036 NR_027860 668489 Mm.158324 NR_027860 Gm9199 EG668489 glycine cleavage system protein H (aminomethyl carrier) pseudogene 0.006410 0.382166 -7.157216 chr2-339 chr2 174401700 174401856 + 40.6 NA Intergenic MER113|DNA|MER1_type -1933 NM_007903 13616 Mm.9478 NM_007903 ENSMUSG00000027524 Edn3 114-CH19|114CH19|ls|tmgc48 endothelin 3 0.000000 0.318471 4.459536 chr13-175 chr13 53660413 53660569 + 40.6 NA Intergenic Intergenic -180177 NM_013601 17702 Mm.1763 NM_013601 ENSMUSG00000021469 Msx2 BB122635|Hox-8|Hox8|Hox8.1 homeobox, msh-like 2 0.012821 0.401274 -0.204218 chr8-206 chr8 14323733 14323889 + 40.6 NA intron (NM_001145965, intron 2 of 14) intron (NM_001145965, intron 2 of 14) 227960 NM_172910 244310 Mm.478217 NM_001145965 ENSMUSG00000047495 Dlgap2 6430596N04Rik|DAP2|Sapap2 discs, large (Drosophila) homolog-associated protein 2 0.019231 0.477707 -7.287967 chr12-264 chr12 87469456 87469612 + 40.6 NA Intergenic Intergenic -98268 NM_177354 238328 Mm.216101 NM_177354 ENSMUSG00000021256 Vash1 AI834978|D930046M13Rik|G630009D10Rik vasohibin 1 0.012821 0.420382 -2.105194 chr11-322 chr11 98953525 98953681 + 40.6 NA Intergenic Intergenic 17564 NM_007719 12775 Mm.2932 NM_007719 ENSMUSG00000037944 Ccr7 CD197|Cdw197|Cmkbr7|EBI1|Ebi1h chemokine (C-C motif) receptor 7 0.000000 0.458599 -7.986506 chr18-152 chr18 47428987 47429143 + 40.6 NA intron (NM_018744, intron 3 of 18) intron (NM_018744, intron 3 of 18) 65134 NM_018744 20358 Mm.40909 NM_018744 ENSMUSG00000019647 Sema6a 9330158E07|A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.025641 0.414013 -8.055630 chr17-207 chr17 62980507 62980663 + 40.6 NA intron (NM_015794, intron 6 of 8) intron (NM_015794, intron 6 of 8) 205457 NM_015794 50758 Mm.136366 XM_001478436 ENSMUSG00000023965 Fbxl17 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 F-box and leucine-rich repeat protein 17 0.012821 0.458599 -2.243484 chr16-172 chr16 97798719 97798875 + 40.6 NA Intergenic Intergenic -32686 NM_015775 50528 Mm.276145 NM_015775 ENSMUSG00000000385 Tmprss2 D16Ertd61e|MGC6821 transmembrane protease, serine 2 0.006410 0.407643 2.958449 chr15-162 chr15 76932634 76932790 + 40.6 NA intron (NM_001110829, intron 5 of 12) intron (NM_001110829, intron 5 of 12) 48355 NM_001110830 93686 Mm.202774 NM_001110827 ENSMUSG00000033565 Rbm9 2810460A15Rik|AA407676|AI118529|Fbm2|Fxh|Hrnbp2 RNA binding motif protein 9 0.000000 0.477707 -5.908706 chr4-320 chr4 136097473 136097629 + 40.6 NA intron (NM_010142, intron 1 of 15) intron (NM_010142, intron 1 of 15) 10460 NM_010142 13844 Mm.250981 NM_010142 ENSMUSG00000028664 Ephb2 Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5 Eph receptor B2 0.025641 0.560510 -6.609120 chr3-262 chr3 153708945 153709101 + 40.6 NA Intergenic Intergenic -46504 NM_011372 20447 Mm.440929 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.006410 0.382166 -0.622579 chr3-212 chr3 23528190 23528346 + 40.6 NA Intergenic Intergenic 1086255 NR_004439 19784 NR_004439 Rprl2 RPRH2|RPRH3|Rmrp3 ribonuclease P RNA-like 2 0.000000 0.350318 -4.657206 chr19-78 chr19 5771348 5771397 + 40.6 NA promoter-TSS (NM_023912) promoter-TSS (NM_023912) 29 NM_023912 78891 Mm.276063 NM_023912 ENSMUSG00000024941 Scyl1 2810011O19Rik|C85140|Ntkl|mdf|mfd|p105 SCY1-like 1 (S. cerevisiae) 0.142857 0.840000 -5.257716 chr2-319 chr2 128026646 128026802 + 40.6 NA intron (NR_028590, intron 1 of 2) intron (NR_028590, intron 1 of 2) 94068 NR_028591 100043424 Mm.297222 XM_001480133 Gm14005 OTTMUSG00000015351 predicted gene 14005 0.012821 0.471338 -3.180854 chr5-387 chr5 108000350 108000506 + 40.6 NA intron (NM_007964, intron 17 of 17) intron (NM_007964, intron 17 of 17) -35782 NM_010278 14581 Mm.453139 NM_010278 ENSMUSG00000029275 Gfi1 AW495828|Gfi-1|Pal-1|Pal1 growth factor independent 1 0.006410 0.445860 -6.436646 chr11-291 chr11 5917267 5917423 + 40.6 NA intron (NM_007595, intron 2 of 20) intron (NM_007595, intron 2 of 20) 48406 NM_001174054 12323 Mm.439733 NM_001174053 ENSMUSG00000057897 Camk2b Camk2d|MGC90738 calcium/calmodulin-dependent protein kinase II, beta 0.006410 0.496815 2.529946 chr16-161 chr16 64073343 64073499 + 40.6 NA Intergenic Intergenic -267062 NM_010140 13837 Mm.1977 NM_010140 ENSMUSG00000052504 Epha3 AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4 Eph receptor A3 0.000000 0.414013 2.051664 chr4-296 chr4 97978592 97978748 + 40.6 NA intron (NM_001005784, intron 17 of 19) intron (NM_001005784, intron 17 of 19) -59981 NM_007704 12695 Mm.90218 NM_001005784 ENSMUSG00000061859 Inadl Cipp|MGC176366|Patj InaD-like (Drosophila) 0.019231 0.547771 1.506476 chr1-405 chr1 80219612 80219768 + 40.6 NA promoter-TSS (NM_016716) promoter-TSS (NM_016716) -236 NM_016716 26554 Mm.12665 NM_016716 ENSMUSG00000004364 Cul3 AI467304|AW146203|mKIAA0617 cullin 3 0.115385 0.694268 -9.306436 chr16-142 chr16 10833548 10833704 + 40.6 NA Intergenic Intergenic 73073 NM_019980 56722 Mm.294753 NM_019980 ENSMUSG00000022500 Litaf 3222402J11Rik|C85531|N4WBP3|TBX1 LPS-induced TN factor 0.000000 0.541401 -5.543797 chr9-319 chr9 120450460 120450616 + 40.6 NA Intergenic Intergenic 30325 NM_025974 67115 Mm.289810 NM_025974 ENSMUSG00000025794 Rpl14 3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14 ribosomal protein L14 0.038462 0.509554 0.924346 chr1-447 chr1 177518216 177518372 + 40.6 NA TTS (NM_021350) TTS (NM_021350) 6734 NM_021350 12663 Mm.440490 NM_021350 ENSMUSG00000078185 Chml AI450814|E030003F13Rik|Rep2 choroideremia-like 0.006410 0.414013 0.454966 chr10-241 chr10 97966447 97966603 + 40.6 NA Intergenic Intergenic -378314 NM_026482 67972 Mm.471912 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 ATPase, Ca++ transporting, plasma membrane 1 0.006410 0.343949 -7.363288 chr3-250 chr3 127914199 127914355 + 40.6 NA Intergenic Intergenic -25932 NM_027482 70617 Mm.317049 NM_027482 ENSMUSG00000050549 5730508B09Rik 2700063A17Rik|C80506|MGC151168|MGC151170 RIKEN cDNA 5730508B09 gene 0.012821 0.503185 1.368840 chr7-201 chr7 100830734 100830890 + 40.6 NA intron (NM_183168, intron 1 of 2) intron (NM_183168, intron 1 of 2) 7641 NM_183168 233571 Mm.471196 NM_183168 ENSMUSG00000048779 P2ry6 2010204J23Rik|P2Y6 pyrimidinergic receptor P2Y, G-protein coupled, 6 0.019231 0.452229 2.128486 chr13-193 chr13 103609030 103609186 + 40.6 NA Intergenic Intergenic -204831 NM_008533 17079 Mm.373974 NM_008533 ENSMUSG00000021624 Cd180 F630107B15|Ly78|RP105 CD180 antigen 0.000000 0.388535 0.331234 chr3-259 chr3 148683657 148683813 + 40.6 NA Intergenic MLT1H|LTR|MaLR 208286 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.006410 0.375796 -8.712008 chr3-241 chr3 107675057 107675213 + 40.6 NA Intergenic Intergenic 7994 NM_026261 67591 Mm.55982 NM_026261 ENSMUSG00000055891 Ubl4b 4930522D07Rik ubiquitin-like 4B 0.006410 0.598726 -2.930144 chr13-185 chr13 90710106 90710262 + 40.6 NA Intergenic Lx8|LINE|L1 146279 NM_025335 66074 Mm.241387 XM_001479626 ENSMUSG00000012422 Tmem167 0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a transmembrane protein 167 0.000000 0.445860 -4.585665 chr5-410 chr5 136738440 136738596 + 40.6 NA intron (NM_198602, intron 2 of 22) intron (NM_198602, intron 2 of 22) -78088 NR_030500 723975 NR_030500 Mir721 Mirn721|miRY|mir-721|mmu-mir-721 microRNA 721 0.012821 0.420382 -0.032837 chr15-167 chr15 84482098 84482254 + 40.6 NA Intergenic Intergenic -26587 NM_146061 109270 Mm.291372 NM_146061 ENSMUSG00000036106 Prr5 AU043908|Arhgap8|C030017C09Rik|C78947|MGC32512|Protor-1|Protor1 proline rich 5 (renal) 0.044872 0.636943 -0.377055 chr7-232 chr7 143123440 143123596 + 40.6 NA intron (NM_008434, intron 11 of 15) intron (NM_008434, intron 11 of 15) -17581 NR_001461 63830 Mm.448015 NR_001461 Kcnq1ot1 Kvlqt1-as|Lit1 KCNQ1 overlapping transcript 1 0.032051 0.573248 -0.882720 chr10-204 chr10 13126621 13126777 + 40.6 NA Intergenic Intergenic -64526 NM_025799 66848 Mm.26625 NM_025799 ENSMUSG00000019810 Fuca2 0610025O11Rik|5530401P20Rik fucosidase, alpha-L- 2, plasma 0.000000 0.464968 0.016881 chr4-280 chr4 71685238 71685394 + 40.6 NA intron (NM_011599, intron 2 of 19) intron (NM_011599, intron 2 of 19) 1964 NM_011599 21885 Mm.399716 NM_011599 ENSMUSG00000008305 Tle1 C230057C06Rik|Estm14|Grg1|Tle4l transducin-like enhancer of split 1, homolog of Drosophila E(spl) 0.032051 0.433121 -2.354758 chr9-299 chr9 62275169 62275325 + 40.6 NA intron (NM_175484, intron 2 of 11) intron (NM_175484, intron 2 of 11) 59803 NM_175484 235431 Mm.335229 NM_175484 ENSMUSG00000041729 Coro2b CLIPINC|E130012P22Rik coronin, actin binding protein, 2B 0.012821 0.681529 -8.925858 chr7-188 chr7 49252432 49252588 + 40.6 NA intron (NM_175272, intron 3 of 37) intron (NM_175272, intron 3 of 37) 138301 NM_175272 78286 Mm.471488 NM_001111016 ENSMUSG00000052512 Nav2 5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015 neuron navigator 2 0.012821 0.477707 -1.933604 chr2-278 chr2 28463190 28463346 + 40.6 NA promoter-TSS (NM_022887) promoter-TSS (NM_022887) 17 NM_022887 64930 Mm.224354 NM_022887 ENSMUSG00000026812 Tsc1 hamartin|mKIAA0243 tuberous sclerosis 1 0.076923 0.649682 -0.822462 chr4-300 chr4 105614635 105614791 + 40.6 NA Intergenic Intergenic -199431 NM_183225 329908 Mm.234544 XM_001473472 ENSMUSG00000028514 Usp24 2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851 ubiquitin specific peptidase 24 0.025641 0.515924 1.405366 chr13-163 chr13 28499629 28499785 + 40.6 NA Intergenic Intergenic 349759 NM_023746 28078 Mm.155058 NM_023746 ENSMUSG00000017064 Prl5a1 1600013P04Rik|D13Wsu14e|PLP-L|Prlpl|RP23-231P12.2 prolactin family 5, subfamily a, member 1 0.000000 0.337580 -3.059114 chr7-195 chr7 80460968 80461124 + 40.6 NA 3' UTR (NM_173863, exon 15 of 15) 3' UTR (NM_173863, exon 15 of 15) -52414 NM_001042527 12144 Mm.12932 NM_001042527 ENSMUSG00000030528 Blm - Bloom syndrome, RecQ helicase-like 0.044872 0.585987 4.998735 chr17-193 chr17 28668690 28668846 + 40.6 NA intron (NM_153390, intron 2 of 2) intron (NM_153390, intron 2 of 2) 1083 NM_153390 69307 Mm.107605 NM_153390 ENSMUSG00000045378 Pxt1 1700001G18Rik|Stepp peroxisomal, testis specific 1 0.012821 0.592357 -5.932045 chr14-97 chr14 105958034 105958190 + 40.6 NA Intergenic (TCCTG)n|Simple_repeat|Simple_repeat 966307 NM_198601 212085 Mm.452063 NM_198601 ENSMUSG00000022113 Trim52 4921513B05Rik tripartite motif-containing 52 0.000000 0.490446 -10.826314 chr11-313 chr11 85915654 85915810 + 40.6 NA intron (NM_178309, intron 16 of 19) intron (NM_178309, intron 16 of 19) 101656 NM_178309 237911 Mm.186143 NM_178309 ENSMUSG00000034329 Brip1 3110009N10Rik|8030460J03Rik|Bach1|OF BRCA1 interacting protein C-terminal helicase 1 0.000000 0.407643 -7.032843 chr2-327 chr2 146021732 146021888 + 40.6 NA intron (NM_001033348, intron 36 of 40) intron (NM_001033348, intron 36 of 40) 108373 NM_016889 53626 Mm.379070 NM_016889 ENSMUSG00000068154 Insm1 IA-1 insulinoma-associated 1 0.006410 0.420382 0.550408 chr2-288 chr2 49634060 49634216 + 40.6 NA intron (NM_027990, intron 1 of 9) intron (NM_027990, intron 1 of 9) 24444 NM_027990 71897 Mm.41381 NM_027990 ENSMUSG00000026765 Lypd6b 2310010M24Rik|AW049525|MGC143485 LY6/PLAUR domain containing 6B 0.012821 0.515924 -0.777309 chr1-375 chr1 35243201 35243357 + 40.6 NA Intergenic Intergenic 448775 NM_145516 226971 Mm.292751 NM_145516 ENSMUSG00000026123 Plekhb2 2310009M15Rik|AU018239|Evt2|Phdc|evt-2 pleckstrin homology domain containing, family B (evectins) member 2 0.000000 0.458599 -3.775120 chr4-268 chr4 35408951 35409107 + 40.6 NA intron (NM_001081343, intron 1 of 10) intron (NM_001081343, intron 1 of 10) 5738 NM_001081343 73205 Mm.331544 NM_001081343 ENSMUSG00000028300 3110043O21Rik AI840585 RIKEN cDNA 3110043O21 gene 0.019231 0.439490 -5.822345 chr17-209 chr17 66257270 66257426 + 40.6 NA intron (NM_172963, intron 10 of 13) intron (NM_172963, intron 10 of 13) 97347 NM_172963 68617 Mm.456506 NM_001114098 ENSMUSG00000052105 1110012J17Rik D130071O13|Kiaa0802|MGC77963|mKIAA0802|t8219b25 RIKEN cDNA 1110012J17 gene 0.019231 0.464968 -5.136924 chr12-274 chr12 105924976 105925132 + 40.6 NA Intergenic Intergenic -39167 NM_009747 12062 Mm.390475 NM_009747 ENSMUSG00000021070 Bdkrb2 B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2 bradykinin receptor, beta 2 0.012821 0.541401 -4.710194 chr11-345 chr11 119824680 119824836 + 40.6 NA intron (NM_007377, intron 13 of 13) intron (NM_007377, intron 13 of 13) 6194 NR_029767 723844 NR_029767 Mir338 Mirn338|mmu-mir-338 microRNA 338 0.000000 0.464968 -6.366157 chr11-347 chr11 121531000 121531156 + 40.6 NA intron (NM_144797, intron 3 of 3) intron (NM_144797, intron 3 of 3) 12562 NM_144797 210029 Mm.153566 NM_144797 ENSMUSG00000039208 Metrnl 9430048M07Rik|BC019776|MGC25696 meteorin, glial cell differentiation regulator-like 0.000000 0.477707 -0.739044 chr18-145 chr18 25055948 25056104 + 40.6 NA intron (NM_175276, intron 5 of 26) intron (NM_175276, intron 5 of 26) 203572 NM_175276 225288 Mm.329322 NM_175276 ENSMUSG00000034295 Fhod3 A930009H06Rik|FHOS2|KIAA1695|mKIAA1695 formin homology 2 domain containing 3 0.000000 0.496815 -2.337729 chr6-217 chr6 87445085 87445241 + 40.6 NA intron (NM_001037727, intron 4 of 10) intron (NM_001037727, intron 4 of 10) 16778 NM_175476 232201 Mm.119564 NM_001037727 ENSMUSG00000030047 Arhgap25 A130039I20Rik Rho GTPase activating protein 25 0.000000 0.388535 -2.976505 chr2-296 chr2 58692220 58692376 + 40.6 NA intron (NM_001001178, intron 12 of 14) intron (NM_001001178, intron 12 of 14) 121728 NM_029692 76654 Mm.437094 NM_029692 ENSMUSG00000026839 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 0.000000 0.414013 -2.604759 chr4-332 chr4 151569400 151569556 + 40.6 NA Intergenic Intergenic 28139 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.000000 0.541401 1.762666 chr7-190 chr7 65659763 65659919 + 40.6 NA Intergenic Intergenic -81244 NM_011048 18553 Mm.294007 XM_355911 ENSMUSG00000030513 Pcsk6 C86343|Pace4|SPC4 proprotein convertase subtilisin/kexin type 6 0.006410 0.445860 5.370134 chr11-330 chr11 108827744 108827900 + 40.6 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA 91384 NM_015732 12006 Mm.71710 NM_015732 ENSMUSG00000000142 Axin2 Axi1|Axil|Conductin axin2 0.064103 0.592357 -3.211576 chr17-187 chr17 24496835 24496991 + 40.6 NA Intergenic Intergenic 16311 NM_001012402 328779 Mm.328848 NM_001012402 ENSMUSG00000039628 Hs3st6 - heparan sulfate (glucosamine) 3-O-sulfotransferase 6 0.006410 0.535032 1.868512 chr6-210 chr6 67118184 67118340 + 40.6 NA Intergenic Intergenic -78294 NM_001113564 66870 Mm.440861 NM_001113564 ENSMUSG00000036371 Serbp1 1200009K13Rik|9330147J08Rik|AL022786|Pairbp1 serpine1 mRNA binding protein 1 0.012821 0.515924 0.306762 chr11-290 chr11 4240531 4240687 + 40.6 NA Intergenic Intergenic 73512 NM_001039537 16878 Mm.4964 NM_001039537 ENSMUSG00000034394 Lif - leukemia inhibitory factor 0.006410 0.433121 -1.821864 chr11-305 chr11 68013829 68013985 + 40.6 NA intron (NM_018768, intron 7 of 7) intron (NM_018768, intron 7 of 7) 189114 NM_008744 18208 Mm.39095 NM_008744 ENSMUSG00000020902 Ntn1 AI561871|BC019633|Netrin-1 netrin 1 0.025641 0.490446 6.382766 chr12-279 chr12 108813345 108813501 + 40.6 NA Intergenic Intergenic 31236 NM_010010 13116 Mm.41911 NM_010010 ENSMUSG00000021259 Cyp46a1 Cyp46 cytochrome P450, family 46, subfamily a, polypeptide 1 0.012821 0.624204 -0.216372 chr4-276 chr4 59457155 59457311 + 40.6 NA intron (NM_001163288, intron 10 of 16) intron (NM_001163288, intron 10 of 16) 75454 NM_001163288 634731 Mm.331637 XM_909547 ENSMUSG00000038578 Susd1 A530080P10|FLJ32142|Gm12528|OTTMUSG00000007332 sushi domain containing 1 0.025641 0.484076 2.275022 chr9-298 chr9 61941184 61941340 + 40.6 NA Intergenic Intergenic -72650 NM_033320 93683 Mm.447195 NM_033320 ENSMUSG00000032252 Glce 1110017N23Rik|AI747411|C130034A12Rik|Hsepi glucuronyl C5-epimerase 0.000000 0.420382 -5.202534 chr2-308 chr2 92863476 92863632 + 40.6 NA Intergenic Intergenic -16571 NM_001177536 100042784 Mm.442142 XM_001478808 ENSMUSG00000075028 Prdm11 8030443D09Rik|AA163972|Gm707 PR domain containing 11 0.025641 0.566879 1.545274 chr11-321 chr11 98769587 98769657 + 40.6 NA intron (NM_001177302, intron 3 of 9) intron (NM_001177302, intron 3 of 9) -6938 NM_001176528 19401 Mm.439744 NM_001176528 ENSMUSG00000037992 Rara Nr1b1|RAR|RARalpha1 retinoic acid receptor, alpha 0.000000 0.591549 -9.807281 chr1-433 chr1 155912710 155912866 + 40.6 NA Intergenic Intergenic 250626 NM_008131 14645 Mm.210745 NM_008131 ENSMUSG00000026473 Glul GS|Glns glutamate-ammonia ligase (glutamine synthetase) 0.006410 0.535032 -3.725265 chr7-220 chr7 127303873 127304029 + 40.6 NA promoter-TSS (NR_024331) promoter-TSS (NR_024331) 66 NR_024331 629159 Mm.256720 XM_001002915 1700008J07Rik AW048743 RIKEN cDNA 1700008J07 gene 0.083333 0.630573 -4.829996 chr17-194 chr17 29681433 29681589 + 40.6 NA Intergenic Intergenic -50587 NM_148926 21769 Mm.220972 NM_148926 ENSMUSG00000044477 Zfand3 AW539211|MGC103362|MGC118625|TEG-27|Tex27 zinc finger, AN1-type domain 3 0.019231 0.585987 -2.205743 chr5-356 chr5 44113855 44114011 + 40.6 NA intron (NM_009763, intron 5 of 8) intron (NM_009763, intron 5 of 8) 6793 NM_009763 12182 Mm.246332 NM_009763 ENSMUSG00000029082 Bst1 114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65 bone marrow stromal cell antigen 1 0.025641 0.515924 -2.867380 chr5-352 chr5 29586612 29586768 + 40.6 NA intron (NM_020295, intron 12 of 16) intron (NM_020295, intron 12 of 16) 57898 NM_021470 56874 Mm.477042 NM_021470 ENSMUSG00000029130 Rnf32 1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2|MGC107158 ring finger protein 32 0.006410 0.363057 4.223272 chr10-251 chr10 125673631 125673787 + 40.6 NA Intergenic RMER10B|LTR|ERVL 304542 NM_177152 320398 Mm.275586 NM_177152 ENSMUSG00000020105 Lrig3 9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016 leucine-rich repeats and immunoglobulin-like domains 3 0.019231 0.452229 0.555443 chr2-279 chr2 29067182 29067338 + 40.6 NA 3' UTR (NR_029460, exon 2 of 2) 3' UTR (NR_029460, exon 2 of 2) 2789 NM_133501 171171 Mm.442448 NM_133500 ENSMUSG00000035513 Ntng2 2610016D08Rik|Lmnt2 netrin G2 0.000000 0.509554 -5.445793 chr14-89 chr14 58505717 58505873 + 40.6 NA Intergenic Intergenic 46274 NM_001168537 71891 Mm.439850 NM_001168535 ENSMUSG00000021982 Cdadc1 2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15 cytidine and dCMP deaminase domain containing 1 0.000000 0.515924 1.502483 chr16-138 chr16 5050085 5050241 + 40.6 NA Intergenic Intergenic -2361 NM_008909 19041 Mm.266875 NM_008909 ENSMUSG00000039457 Ppl AW553870 periplakin 0.019231 0.560510 -3.291198 chr7-202 chr7 101190887 101191043 + 40.6 NA Intergenic Intergenic -4176 NM_019990 56018 Mm.28896 NM_019990 ENSMUSG00000030688 Stard10 AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81 START domain containing 10 0.019231 0.566879 -1.411937 chr5-359 chr5 52083692 52083848 + 40.6 NA Intergenic Intergenic -241601 NM_008904 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|PGC-1|PGC-1v|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 0.000000 0.426752 1.568614 chr12-277 chr12 107847835 107847991 + 40.6 NA Intergenic Intergenic 603308 NM_001079883 58208 Mm.392694 NM_001079883 ENSMUSG00000048251 Bcl11b 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 B-cell leukemia/lymphoma 11B 0.000000 0.515924 -1.971759 chr12-272 chr12 100857305 100857461 + 40.6 NA intron (NM_001033213, intron 4 of 19) intron (NM_001033213, intron 4 of 19) 64489 NM_001033213 104718 Mm.295441 XM_127105 ENSMUSG00000033530 Ttc7b AA408451|Ttc7l1 tetratricopeptide repeat domain 7B 0.019231 0.407643 -2.967930 chr4-331 chr4 150689496 150689652 + 40.6 NA intron (NM_001081557, intron 1 of 23) intron (NM_001081557, intron 1 of 23) 15983 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.025641 0.547771 6.871914 chr2-301 chr2 68235593 68235749 + 40.6 NA intron (NM_016866, intron 1 of 17) intron (NM_016866, intron 1 of 17) 37149 NM_016866 53416 Mm.198414 NM_016866 ENSMUSG00000027030 Stk39 AW227544|AW556857|DCHT|SPAK serine/threonine kinase 39, STE20/SPS1 homolog (yeast) 0.012821 0.343949 -3.180854 chr15-145 chr15 27203205 27203361 + 40.6 NA Intergenic Intergenic -208118 NM_020332 11732 Mm.265264 NM_020332 ENSMUSG00000022265 Ank Ankh|D15Ertd221e|ank|mKIAA1581 progressive ankylosis 0.019231 0.464968 -1.394915 chr5-403 chr5 129764835 129764991 + 40.6 NA Intergenic Intergenic -51025 NM_172276 231769 Mm.288714 NM_172276 ENSMUSG00000029439 Srsf8 1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8 serine/arginine-rich splicing factor 8 0.000000 0.363057 -0.660600 chr5-416 chr5 143047693 143047849 + 40.6 NA intron (NM_001122730, intron 4 of 29) intron (NM_001122730, intron 4 of 29) 34756 NM_178242 231861 Mm.480618 XM_355727 ENSMUSG00000039477 Tnrc18 BC025631|EG381742|MGC59613|Zfp469 trinucleotide repeat containing 18 0.012821 0.566879 -0.798566 chr5-391 chr5 113264798 113264954 + 40.6 NA Intergenic Intergenic -9059 NM_177078 320129 Mm.285619 NM_001035531 ENSMUSG00000042249 Adrbk2 4833444A01Rik|AI851927|AW551196|Adrbk-2|Bark-2|GRK3 adrenergic receptor kinase, beta 2 0.038462 0.554140 -3.241093 chr2-292 chr2 51717681 51717837 + 40.6 NA Intergenic Intergenic 38894 NM_001141982 71684 Mm.28309 NM_001141981 ENSMUSG00000036249 Rbm43 0610033I05Rik RNA binding motif protein 43 0.006410 0.292994 -4.130243 chr2-295 chr2 55662528 55662684 + 40.6 NA Intergenic Intergenic 410065 NM_008426 16519 Mm.5127 NM_008426 ENSMUSG00000026824 Kcnj3 GIRK1|Kcnf3|Kir3.1|MGC124233|MGC124234 potassium inwardly-rectifying channel, subfamily J, member 3 0.012821 0.433121 -3.143885 chr9-311 chr9 103026452 103026608 + 40.6 NA intron (NM_173781, intron 7 of 7) intron (NM_173781, intron 7 of 7) 33685 NM_009275 20818 Mm.273053 NM_009275 ENSMUSG00000032553 Srprb AA409543 signal recognition particle receptor, B subunit 0.000000 0.522293 -5.953268 chr10-238 chr10 94895435 94895591 + 40.6 NA Intergenic Intergenic 36102 NM_026065 67270 Mm.30008 NM_026065 ENSMUSG00000062981 Mrpl42 2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|MRP-L31|PTD007|Rpml31 mitochondrial ribosomal protein L42 0.019231 0.464968 4.269400 chr17-182 chr17 5579531 5579687 + 40.6 NA intron (NM_146073, intron 1 of 8) intron (NM_146073, intron 1 of 8) 130528 NM_146073 224454 Mm.478308 NM_146073 ENSMUSG00000034265 Zdhhc14 B530001K09Rik|MGC29194|New1cp zinc finger, DHHC domain containing 14 0.012821 0.439490 -1.838325 chr1-458 chr1 192546357 192546513 + 40.6 NA intron (NM_178775, intron 6 of 14) intron (NM_178775, intron 6 of 14) 65950 NM_178775 320119 Mm.220912 NM_178775 ENSMUSG00000037581 Rps6kc1 AA682037|B130003F20Rik|C80612|Rpk118 ribosomal protein S6 kinase polypeptide 1 0.012821 0.477707 -0.537215 chr11-320 chr11 98244527 98244683 + 40.6 NA intron (NM_001003817, intron 14 of 26) intron (NM_001003817, intron 14 of 26) 10473 NM_025559 103742 Mm.259614 NM_025559 ENSMUSG00000002580 1810046J19Rik AI463380|Rdx12 RIKEN cDNA 1810046J19 gene 0.006410 0.458599 -1.774781 chr3-263 chr3 156603609 156603765 + 40.6 NA intron (NM_001039094, intron 1 of 6) intron (NM_001039094, intron 1 of 6) 106436 NM_177274 320840 Mm.317293 NM_001039094 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra|mKIAA3001 neuronal growth regulator 1 0.000000 0.420382 -4.278932 chr12-261 chr12 81522573 81522729 + 40.6 NA TTS (NM_001081421) TTS (NM_001081421) 40058 NM_007951 13877 Mm.378913 NM_007951 ENSMUSG00000021131 Erh MGC103398|MGC130271|MGC130272|Mer|Prei1 enhancer of rudimentary homolog (Drosophila) 0.019231 0.509554 0.610530 chr6-215 chr6 82969869 82970025 + 40.6 NA intron (NM_033079, intron 5 of 9) intron (NM_033079, intron 5 of 9) 29182 NM_010070 13448 Mm.156 NM_010070 ENSMUSG00000068335 Dok1 AW557123|p62DOK docking protein 1 0.019231 0.464968 2.408456 chr8-203 chr8 12001440 12001596 + 40.6 NA Intergenic Intergenic 161026 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.000000 0.547771 -5.199987 chr1-446 chr1 177274973 177275129 + 40.6 NA intron (NM_011880, intron 2 of 16) intron (NM_011880, intron 2 of 16) 54169 NM_011880 24012 Mm.7956 NM_011880 ENSMUSG00000026527 Rgs7 - regulator of G protein signaling 7 0.012821 0.369427 -5.199987 chr3-240 chr3 104450153 104450309 + 40.6 NA Intergenic Intergenic -100764 NM_001159354 99470 Mm.264849 NM_001159354 ENSMUSG00000052539 Magi3 4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634 membrane associated guanylate kinase, WW and PDZ domain containing 3 0.006410 0.350318 -0.277298 chr4-313 chr4 119467233 119467389 + 40.6 NA intron (NM_010657, intron 1 of 8) intron (NM_010657, intron 1 of 8) 154999 NM_010657 16656 Mm.422538 NM_010657 ENSMUSG00000028634 Hivep3 2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3 human immunodeficiency virus type I enhancer binding protein 3 0.012821 0.528662 -4.067188 chr8-218 chr8 82469723 82469879 + 40.6 NA Intergenic Intergenic -65946 NM_001081164 73945 Mm.34348 NM_001081164 ENSMUSG00000036990 Otud4 4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046 OTU domain containing 4 0.019231 0.471338 3.251814 chr9-271 chr9 13503019 13503175 + 40.6 NA intron (NR_024025, intron 1 of 15) intron (NR_024025, intron 1 of 15) 3520 NR_024025 77116 Mm.210405 NM_023858 ENSMUSG00000031918 Mtmr2 6030445P13Rik myotubularin related protein 2 0.019231 0.375796 0.721738 chr8-219 chr8 104539819 104539975 + 40.6 NA Intergenic Intergenic 1134343 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|MGC25339 cadherin 11 0.006410 0.426752 2.302582 chr13-195 chr13 105307809 105307965 + 40.6 NA exon (NM_030731, exon 3 of 10) exon (NM_030731, exon 3 of 10) 8408 NM_030731 81003 Mm.244190 NM_030731 ENSMUSG00000021712 Trim23 6330516O20Rik|AI450195|Arfd1 tripartite motif-containing 23 0.012821 0.452229 6.648223 chr11-319 chr11 94006884 94007040 + 40.6 NA Intergenic Intergenic -20581 NM_009427 22057 Mm.259673 NM_009427 ENSMUSG00000037573 Tob1 Tob|Trob transducer of ErbB-2.1 0.025641 0.496815 -1.505037 chr17-190 chr17 27157100 27157256 + 40.6 NA intron (NM_001013385, intron 8 of 8) intron (NM_001013385, intron 8 of 8) 73715 NM_001013385 268934 Mm.358940 NM_001013385 ENSMUSG00000063239 Grm4 Gprc1d|mGluR4 glutamate receptor, metabotropic 4 0.032051 0.598726 -3.741996 chr4-282 chr4 81507441 81507597 + 40.6 NA Intergenic Intergenic 469020 NM_001113210 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.019231 0.496815 -3.440977 chr18-149 chr18 35724444 35724600 + 40.6 NA promoter-TSS (NM_026420) promoter-TSS (NM_026420) -118 NM_026420 67869 Mm.126534 NM_026420 ENSMUSG00000037058 Paip2 2310050K10Rik|AU045972 polyadenylate-binding protein-interacting protein 2 0.070513 0.585987 -3.649423 chr7-185 chr7 43797427 43797583 + 40.6 NA Intergenic Intergenic -4307 NM_174865 317652 Mm.479812 NM_174865 ENSMUSG00000055193 Klk15 MGC129160|MGC129345 kallikrein related-peptidase 15 0.006410 0.490446 -0.366420 chr7-198 chr7 84528205 84528361 + 40.6 NA intron (NM_022985, intron 2 of 7) intron (NM_022985, intron 2 of 7) 27253 NM_022985 65098 Mm.397115 NM_022985 ENSMUSG00000030629 Zfand6 3110005P07Rik|Awp1|Za20d3 zinc finger, AN1-type domain 6 0.006410 0.433121 -4.985608 chr2-276 chr2 27264395 27264551 + 40.6 NA Intergenic CpG -15639 NM_009500 22325 Mm.179011 NM_009500 ENSMUSG00000009621 Vav2 2810040F13Rik|AI847175 vav 2 oncogene 0.089744 0.681529 -3.777406 chr13-184 chr13 90403789 90403945 + 40.6 NA intron (NM_028012, intron 7 of 7) intron (NM_028012, intron 7 of 7) 159980 NM_028012 108138 Mm.37531 NM_028012 ENSMUSG00000021615 Xrcc4 2310057B22Rik|AW413319|AW545101 X-ray repair complementing defective repair in Chinese hamster cells 4 0.012821 0.426752 -2.655527 chr6-236 chr6 144052183 144052339 + 40.6 NA intron (NM_001113559, intron 3 of 13) intron (NM_001113559, intron 3 of 13) 114456 NM_001113559 20678 Mm.1752 NM_001113559 ENSMUSG00000041540 Sox5 A730017D01Rik|AI528773|MGC124352 SRY-box containing gene 5 0.019231 0.414013 -9.071423 chr12-248 chr12 56379205 56379361 + 40.6 NA Intergenic Intergenic 31494 NM_010907 18035 Mm.170515 NM_010907 ENSMUSG00000021025 Nfkbia AI462015|Nfkbi nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.012821 0.426752 -6.336118 chr10-211 chr10 20603908 20604064 + 40.6 NA Intergenic Intergenic -38014 NM_026203 52906 Mm.253280 NM_001177776 ENSMUSG00000019986 Ahi1 1700015F03Rik|Ahi-1|D10Bwg0629e Abelson helper integration site 1 0.038462 0.579618 -8.030953 chr8-204 chr8 12842426 12842582 + 40.6 NA intron (NM_015804, intron 17 of 28) intron (NM_015804, intron 17 of 28) -73365 NM_178076 17207 Mm.334413 NM_001159485 ENSMUSG00000031442 Mcf2l C130040G20Rik|Dbs|Ost|mKIAA0362 mcf.2 transforming sequence-like 0.012821 0.414013 -0.366421 chr8-229 chr8 123257342 123257498 + 40.6 NA Intergenic Intergenic -117422 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.006410 0.414013 3.052367 chr4-289 chr4 94244633 94244789 + 40.6 NA intron (NM_013690, intron 1 of 22) intron (NM_013690, intron 1 of 22) 13394 NM_013690 21687 Mm.14313 NM_013690 ENSMUSG00000006386 Tek AA517024|Cd202b|Hyk|Tie2|tie-2 endothelial-specific receptor tyrosine kinase 0.012821 0.547771 -4.100725 chr7-205 chr7 109594988 109595144 + 40.6 NA intron (NM_020052, intron 20 of 21) intron (NM_020052, intron 20 of 21) -22344 NM_020610 78593 Mm.275374 NM_020610 ENSMUSG00000034825 Nrip3 A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2 nuclear receptor interacting protein 3 0.006410 0.407643 -5.012899 chr12-262 chr12 83418843 83418999 + 40.6 NA Intergenic Intergenic -116964 NM_015812 50779 Mm.153013 NM_015812 ENSMUSG00000021219 Rgs6 - regulator of G-protein signaling 6 0.000000 0.464968 5.498111 chr18-155 chr18 53346676 53346832 + 40.6 NA TTS (NM_026386) TTS (NM_026386) -24276 NM_029394 69226 Mm.32414 NM_029394 ENSMUSG00000024535 Snx24 2810011K15Rik|5730433I16Rik|AI451341 sorting nexing 24 0.025641 0.528662 -2.541862 chr9-297 chr9 61437050 61437206 + 40.6 NA Intergenic Intergenic 266757 NM_001083927 21887 Mm.469199 NM_001083927 ENSMUSG00000032280 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 transducin-like enhancer of split 3, homolog of Drosophila E(spl) 0.025641 0.477707 1.591598 chr2-316 chr2 126263675 126263831 + 40.6 NA intron (NM_011978, intron 4 of 9) intron (NM_011978, intron 4 of 9) 19289 NM_011978 26458 Mm.290044 NM_011978 ENSMUSG00000027359 Slc27a2 ACSVL1|FATP2|VLCS|Vlac|Vlacs solute carrier family 27 (fatty acid transporter), member 2 0.006410 0.496815 -3.784788 chr5-404 chr5 130558432 130558588 + 40.6 NA intron (NM_001015876, intron 6 of 15) intron (NM_001015876, intron 6 of 15) 16771 NM_001015876 100929 Mm.271296 NM_001015876 ENSMUSG00000056310 Tyw1 AW125391|Rsafd1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) 0.019231 0.535032 -7.770581 chr13-173 chr13 51710048 51710204 + 40.6 NA Intergenic Intergenic 45917 NM_029279 75420 Mm.275981 NM_029279 ENSMUSG00000035139 Secisbp2 2210413N07Rik|2810012K13Rik|SBP2 SECIS binding protein 2 0.006410 0.509554 2.529946 chr2-321 chr2 130729184 130729340 + 40.6 NA Intergenic Intergenic 4861 NM_020014 14588 Mm.198399 NM_001136063 ENSMUSG00000027316 Gfra4 AW060733|G630015H18Rik glial cell line derived neurotrophic factor family receptor alpha 4 0.025641 0.547771 -3.509278 chrX-30 chrX 4779901 4780057 + 40.6 NA Intergenic L1_Mus4|LINE|L1 -64563 NM_001085523 434725 Mm.457958 XM_486609 ENSMUSG00000078209 Gm14374 OTTMUSG00000016453 predicted gene 14374 0.006410 0.452229 -0.431369 chr1-370 chr1 10322973 10323129 + 40.6 NA intron (NM_177834, intron 8 of 10) intron (NM_177834, intron 8 of 10) -105167 NM_001102430 211673 Mm.229141 XM_001473166 ENSMUSG00000067851 Arfgef1 ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 0.000000 0.407643 -2.034606 chr10-240 chr10 95788745 95788901 + 40.6 NA Intergenic Intergenic -257865 NM_007569 12226 Mm.23811 NM_007569 ENSMUSG00000036478 Btg1 AI426953|AW546738 B-cell translocation gene 1, anti-proliferative 0.000000 0.477707 -3.135247 chr10-239 chr10 95748631 95748787 + 40.6 NA Intergenic Intergenic -297979 NM_007569 12226 Mm.23811 NM_007569 ENSMUSG00000036478 Btg1 AI426953|AW546738 B-cell translocation gene 1, anti-proliferative 0.006410 0.407643 -4.857335 chr2-330 chr2 153238080 153238236 + 40.6 NA Intergenic L2|LINE|L2 -16746 NM_001134300 329540 Mm.50600 NM_001001986 ENSMUSG00000061411 8430427H17Rik 4931410H15|AI429157|Gm1636 RIKEN cDNA 8430427H17 gene 0.012821 0.541401 3.198230 chr2-299 chr2 65148070 65148226 + 40.6 NA intron (NM_177074, intron 7 of 11) intron (NM_177074, intron 7 of 11) 16717 NM_177074 320106 Mm.227703 NM_177074 ENSMUSG00000061171 Slc38a11 9330158F14Rik solute carrier family 38, member 11 0.006410 0.452229 -3.904073 chr6-201 chr6 37328775 37328931 + 40.6 NA intron (NM_178661, intron 1 of 11) intron (NM_178661, intron 1 of 11) 42903 NM_178661 208647 Mm.169929 NM_178661 ENSMUSG00000038648 Creb3l2 BBF2H7|C530025K05Rik cAMP responsive element binding protein 3-like 2 0.032051 0.547771 -0.885205 chr9-284 chr9 47544441 47544597 + 40.6 NA intron (NM_001025600, intron 3 of 8) intron (NM_001025600, intron 3 of 8) 263173 NM_018770 54725 Mm.234832 NM_001025600 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 cell adhesion molecule 1 0.025641 0.490446 6.564595 chr1-422 chr1 128931402 128931558 + 40.6 NA Intergenic L1MC4a|LINE|L1 -101051 NM_145128 107895 Mm.472488 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 0.006410 0.420382 -1.203150 chr17-189 chr17 26409995 26410151 + 40.6 NA intron (NM_025272, intron 1 of 3) intron (NM_025272, intron 1 of 3) 6078 NM_025272 11974 Mm.22602 NM_025272 ENSMUSG00000015575 Atp6v0e Atp6k|Atp6v0e1|M9.2 ATPase, H+ transporting, lysosomal V0 subunit E 0.006410 0.471338 -1.733378 chr3-219 chr3 52286076 52286232 + 40.6 NA Intergenic Intergenic -70111 NM_019739 56458 Mm.29891 NM_019739 ENSMUSG00000044167 Foxo1 AI876417|Afxh|FKHR|Fkhr1|Foxo1a forkhead box O1 0.038462 0.528662 -4.845786 chr5-365 chr5 66283482 66283638 + 40.6 NA promoter-TSS (NR_027961) promoter-TSS (NR_027961) -140 NR_027961 231253 Mm.478504 NR_027961 9130230L23Rik - RIKEN cDNA 9130230L23 gene 0.025641 0.477707 -2.176225 chr3-257 chr3 140420786 140420942 + 40.6 NA Intergenic Intergenic 728878 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 0.000000 0.363057 -1.504172 chr1-390 chr1 60690307 60690463 + 40.6 NA promoter-TSS (NM_007642) promoter-TSS (NM_007642) -548 NM_007642 12487 Mm.255003 NM_007642 ENSMUSG00000026012 Cd28 - CD28 antigen 0.012821 0.433121 -1.651693 chr16-152 chr16 37630293 37630449 + 40.6 NA Intergenic Intergenic -56764 NM_026610 68194 Mm.390788 NM_026610 ENSMUSG00000022820 Ndufb4 0610006N12Rik|1300010H20Rik NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 0.006410 0.401274 0.528211 chr10-207 chr10 17172391 17172547 + 40.6 NA Intergenic Intergenic -240174 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.006410 0.420382 1.887916 chr9-321 chr9 120858363 120858519 + 40.6 NA intron (NM_177589, intron 35 of 36) intron (NM_177589, intron 35 of 36) 76166 NM_001165902 12387 Mm.291928 NM_001165902 ENSMUSG00000006932 Ctnnb1 Catnb|Mesc catenin (cadherin associated protein), beta 1 0.000000 0.433121 2.363643 chr17-188 chr17 25645048 25645204 + 40.6 NA intron (NM_139154, intron 2 of 6) intron (NM_139154, intron 2 of 6) 2188 NM_139154 224624 Mm.328872 NM_139154 ENSMUSG00000025730 Rab40c RAR3 Rab40c, member RAS oncogene family 0.019231 0.433121 -2.468555 chr14-93 chr14 75929674 75929830 + 40.6 NA intron (NM_172813, intron 1 of 18) intron (NM_172813, intron 1 of 18) 38782 NM_172813 239188 Mm.441158 NM_172813 ENSMUSG00000022012 Enox1 B230207J08|D230005D02Rik ecto-NOX disulfide-thiol exchanger 1 0.006410 0.401274 -3.306578 chr5-388 chr5 108173049 108173205 + 40.6 NA intron (NM_026062, intron 1 of 4) intron (NM_026062, intron 1 of 4) 32236 NM_016980 19983 Mm.426204 NM_016980 ENSMUSG00000058558 Rpl5 MGC101934|MGC117998|U21RNA ribosomal protein L5 0.000000 0.509554 -3.111907 chr1-445 chr1 177079414 177079570 + 40.6 NA intron (NM_011880, intron 3 of 16) intron (NM_011880, intron 3 of 16) 249728 NM_011880 24012 Mm.7956 NM_011880 ENSMUSG00000026527 Rgs7 - regulator of G protein signaling 7 0.019231 0.445860 -4.935753 chr5-390 chr5 113148436 113148592 + 40.6 NA Intergenic Intergenic -11849 NM_028901 74376 Mm.441903 XM_912851 Myo18b 4932408L24Rik|4933411E19Rik|Gm448 myosin XVIIIb 0.019231 0.490446 0.868928 chr10-206 chr10 16480630 16480786 + 40.6 NA Intergenic Intergenic -931935 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.000000 0.305732 -2.335121 chr5-354 chr5 33564993 33565149 + 40.6 NA 3' UTR (NM_013502, exon 9 of 9) 3' UTR (NM_013502, exon 9 of 9) 26755 NM_013502 13016 Mm.7286 NM_013502 ENSMUSG00000037373 Ctbp1 BARS|CtBP1-L|CtBP1-S|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E C-terminal binding protein 1 0.012821 0.343949 -5.781132 chr9-312 chr9 103416956 103417112 + 40.6 NA intron (NM_178638, intron 3 of 5) intron (NM_178638, intron 3 of 5) -78556 NM_001002896 107993 Mm.437003 NM_001002896 ENSMUSG00000032556 Bfsp2 5830418P13Rik|AI448593|CP49 beaded filament structural protein 2, phakinin 0.025641 0.477707 -3.340427 chr10-250 chr10 125544810 125544966 + 40.6 NA Intergenic L2|LINE|L2 175721 NM_177152 320398 Mm.275586 NM_177152 ENSMUSG00000020105 Lrig3 9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016 leucine-rich repeats and immunoglobulin-like domains 3 0.038462 0.407643 -2.009931 chr7-186 chr7 46378197 46378353 + 40.6 NA intron (NM_013789, intron 10 of 10) intron (NM_013789, intron 10 of 10) 113737 NM_001112739 16502 Mm.249386 NM_001112739 ENSMUSG00000058975 Kcnc1 C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw potassium voltage gated channel, Shaw-related subfamily, member 1 0.019231 0.592357 -3.567651 chr14-79 chr14 17409082 17409238 + 40.6 NA intron (NM_144839, intron 4 of 5) intron (NM_144839, intron 4 of 5) 277593 NM_144839 218793 Mm.23551 NM_144839 ENSMUSG00000058317 Ube2e2 BC016265|MGC28917 ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast) 0.006410 0.522293 -1.009215 chr5-379 chr5 97684580 97684736 + 40.6 NA Intergenic Intergenic 12652 NM_010294 14626 Mm.61206 NM_010294 ENSMUSG00000050553 Gk2 GKTA|Gk-rs2 glycerol kinase 2 0.000000 0.426752 -4.769458 chr5-393 chr5 115183411 115183460 + 40.6 NA promoter-TSS (NM_145209) promoter-TSS (NM_145209) -803 NM_145209 231655 Mm.95479 NM_145209 ENSMUSG00000041827 Oasl1 7530414C13Rik|oasl9 2'-5' oligoadenylate synthetase-like 1 0.000000 0.580000 -1.938900 chr8-242 chr8 130131629 130131785 + 40.6 NA intron (NM_001122850, intron 2 of 15) intron (NM_001122850, intron 2 of 15) -53994 NM_001013581 93742 Mm.299254 NM_001013580 ENSMUSG00000025812 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) 0.019231 0.407643 -1.550652 chr5-364 chr5 65883745 65883901 + 40.6 NA Intergenic Intergenic 67428 NM_016786 53323 Mm.441014 NM_016786 ENSMUSG00000029203 Ube2k AW492011|D5Ertd601e|E2-25k|Hip2|Hypg|Lig ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 0.006410 0.452229 0.358122 chr17-215 chr17 84927084 84927240 + 40.6 NA intron (NM_001159497, intron 5 of 5) intron (NM_001159497, intron 5 of 5) -9510 NM_009205 20532 Mm.227176 NM_009205 ENSMUSG00000024131 Slc3a1 D2H|NBAT|NTAA|RBAT solute carrier family 3, member 1 0.006410 0.414013 -5.090556 chr15-155 chr15 61942377 61942533 + 40.6 NA intron (NR_003368, intron 2 of 8) intron (NR_003368, intron 2 of 8) 74803 NR_003368 19296 Mm.4608 NR_003368 Pvt1 Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1 plasmacytoma variant translocation 1 0.012821 0.452229 -1.718772 chr6-207 chr6 56318174 56318330 + 40.6 NA Intergenic MIRb|SINE|MIR -19040 NM_001159955 18575 Mm.5145 NM_001025568 ENSMUSG00000004347 Pde1c - phosphodiesterase 1C 0.000000 0.439490 -3.323569 chr7-223 chr7 131748063 131748219 + 40.6 NA Intergenic Intergenic -56661 NM_173410 233919 Mm.208740 NM_173410 ENSMUSG00000040125 Gpr26 9630036A11Rik|A730021D22 G protein-coupled receptor 26 0.012821 0.509554 -0.505136 chr8-217 chr8 81551423 81551579 + 40.6 NA intron (NM_029736, intron 5 of 11) intron (NM_029736, intron 5 of 11) 146095 NM_029736 76775 Mm.334631 NM_029736 ENSMUSG00000031684 Slc10a7 2410193C02Rik|P7 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 0.000000 0.426752 -2.490685 chr10-228 chr10 79110404 79110560 + 40.6 NA intron (NM_001077184, intron 1 of 6) intron (NM_001077184, intron 1 of 6) 2996 NM_009768 12215 Mm.431532 NM_001077184 ENSMUSG00000023175 Bsg AI115436|AI325119|CD147|EMMPRIN|HT-7 basigin 0.000000 0.617834 -3.413389 chr13-194 chr13 103977981 103978137 + 40.6 NA intron (NM_175171, intron 4 of 28) intron (NM_175171, intron 4 of 28) 164120 NM_008533 17079 Mm.373974 NM_008533 ENSMUSG00000021624 Cd180 F630107B15|Ly78|RP105 CD180 antigen 0.000000 0.445860 -0.458539 chr4-278 chr4 62703984 62704140 + 40.6 NA intron (NM_025685, intron 1 of 60) intron (NM_025685, intron 1 of 60) 2290 NM_025685 373864 Mm.194116 NM_025685 ENSMUSG00000045672 Col27a1 5730512J02Rik|AI449266|mKIAA1870 collagen, type XXVII, alpha 1 0.006410 0.547771 -4.171104 chr9-308 chr9 94582674 94582830 + 40.6 NA intron (NM_177909, intron 4 of 15) intron (NM_177909, intron 4 of 15) 103509 NM_177909 331004 Mm.326125 NM_177909 ENSMUSG00000031129 Slc9a9 5730527A11Rik|9930105B05|AI854429|Nhe9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 0.012821 0.439490 0.159219 chr13-178 chr13 59288561 59288717 + 40.6 NA Intergenic Intergenic 278303 NM_001048008 67269 Mm.212923 NM_001048008 ENSMUSG00000021557 Agtpbp1 1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|BB114605|CCP1|MGC90651|Nna1|mKIAA1035|nmf243|pcd ATP/GTP binding protein 1 0.006410 0.445860 -9.026791 chr18-165 chr18 84084453 84084609 + 40.6 NA Intergenic Intergenic 136224 NM_001081300 110796 Mm.102136 NM_001081300 ENSMUSG00000046982 Tshz1 5730407I04Rik|D18Bwg1409e|KIAA4206|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1 teashirt zinc finger family member 1 0.006410 0.515924 -6.139737 chr10-230 chr10 86696007 86696163 + 40.6 NA Intergenic Intergenic 208241 NM_029685 76640 Mm.78423 XM_354556 1700113H08Rik - RIKEN cDNA 1700113H08 gene 0.019231 0.477707 -0.292662 chr9-279 chr9 25790299 25790455 + 40.6 NA Intergenic Intergenic 559335 NM_026189 67484 Mm.112977 NM_026189 ENSMUSG00000036611 Eepd1 2310005P05Rik|AI481005 endonuclease/exonuclease/phosphatase family domain containing 1 0.006410 0.414013 1.278494 chr2-287 chr2 48045138 48045294 + 40.6 NA Intergenic Intergenic -590901 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA 0.006410 0.477707 1.950970 chr9-317 chr9 115808501 115808657 + 40.6 NA intron (NM_028638, intron 8 of 14) intron (NM_028638, intron 8 of 14) 50427 NM_028638 73748 Mm.29221 XM_135211 ENSMUSG00000056880 Gadl1 1110027M19Rik glutamate decarboxylase-like 1 0.000000 0.445860 -2.037036 chr17-198 chr17 35449276 35449432 + 40.6 NA promoter-TSS (NM_001010833) promoter-TSS (NM_001010833) -196 NM_001010833 240087 Mm.218511 NM_001010833 ENSMUSG00000061607 Mdc1 6820401C03|AA413496|Nfbd1|mKIAA0170 mediator of DNA damage checkpoint 1 0.070513 0.585987 -3.473837 chr8-227 chr8 122246962 122247118 + 40.6 NA Intergenic Intergenic 16526 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 0.012821 0.401274 -4.853086 chr12-263 chr12 86625556 86625712 + 40.6 NA Intergenic Intergenic -10007 NM_145447 217721 Mm.301076 NM_145447 ENSMUSG00000034258 Mfsd7c CCT|Flvcr2|MGC19050 major facilitator superfamily domain containing 7C 0.000000 0.464968 -2.927620 chr16-171 chr16 95911626 95911782 + 40.6 NA Intergenic Intergenic 100500 NM_011809 23872 Mm.290207 NM_011809 ENSMUSG00000022895 Ets2 AU022856|Ets-2 E26 avian leukemia oncogene 2, 3' domain 0.019231 0.452229 -3.304648 chr19-90 chr19 46981420 46981576 + 40.6 NA intron (NM_029810, intron 2 of 17) intron (NM_029810, intron 2 of 17) 34164 NM_029810 76952 Mm.40965 NM_001164363 ENSMUSG00000025041 Nt5c2 2010002I23Rik|CnII|Gmp|Nt5b|Pnt5|cN-II 5'-nucleotidase, cytosolic II 0.000000 0.363057 -2.195897 chr15-160 chr15 72234399 72234555 + 40.6 NA Intergenic Intergenic 139058 NM_001033876 223604 Mm.386856 NM_001033876 ENSMUSG00000036760 Kcnk9 Task3 potassium channel, subfamily K, member 9 0.000000 0.464968 -4.123435 chr4-273 chr4 46575303 46575338 + 40.6 NA intron (NM_178893, intron 3 of 12) intron (NM_178893, intron 3 of 12) 12220 NM_178893 107684 Mm.416311 NM_001164804 ENSMUSG00000028337 Coro2a AI563590|IR10 coronin, actin binding protein 2A 0.000000 0.555556 -9.908088 chr1-406 chr1 82029959 82030115 + 40.6 NA Intergenic Intergenic 140426 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.025641 0.554140 3.064796 chr7-197 chr7 83967114 83967270 + 40.6 NA Intergenic L1MC|LINE|L1 -4502 NM_030728 80982 Mm.160389 NM_030728 ENSMUSG00000052353 9930013L23Rik 12H19.01.T7|6330404C01Rik|AY007814 RIKEN cDNA 9930013L23 gene 0.012821 0.407643 -2.012410 chr16-145 chr16 22453819 22453975 + 40.6 NA intron (NM_138650, intron 20 of 24) intron (NM_138650, intron 20 of 24) -99071 NM_023794 104156 Mm.155708 NM_023794 ENSMUSG00000013089 Etv5 1110005E01Rik|8430401F14Rik|ERM ets variant gene 5 0.012821 0.509554 -3.343624 chr13-187 chr13 97186126 97186282 + 40.6 NA intron (NM_029210, intron 2 of 12) intron (NM_029210, intron 2 of 12) 47072 NM_029210 75209 Mm.441155 XM_914033 ENSMUSG00000051111 Sv2c 4930527L09Rik|AI841971 synaptic vesicle glycoprotein 2c 0.000000 0.356688 6.537007 chr1-423 chr1 130499134 130499290 + 40.6 NA Intergenic Intergenic -79367 NM_009911 12767 Mm.1401 XM_001478244 ENSMUSG00000045382 Cxcr4 CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r chemokine (C-X-C motif) receptor 4 0.006410 0.382166 4.296466 chr5-415 chr5 141901058 141901214 + 40.6 NA intron (NM_177879, intron 4 of 44) intron (NM_177879, intron 4 of 44) 407129 NM_177879 330222 Mm.406697 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik sidekick homolog 1 (chicken) 0.019231 0.458599 3.958927 chrX-36 chrX 155481624 155481780 + 40.6 NA intron (NM_008810, intron 1 of 10) intron (NM_008810, intron 1 of 10) 739 NM_008810 18597 Mm.34775 NM_008810 ENSMUSG00000031299 Pdha1 Pdha-1 pyruvate dehydrogenase E1 alpha 1 0.019231 0.554140 -3.673659 chr4-308 chr4 117621125 117621177 + 40.6 NA intron (NM_001161774, intron 1 of 11) intron (NM_001161774, intron 1 of 11) 11671 NM_009176 20441 Mm.251002 NM_001161774 ENSMUSG00000028538 St3gal3 ST3N|Siat3|Siat6 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 0.038462 0.471698 -11.609597 chr2-298 chr2 62613859 62614015 + 40.6 NA intron (NM_133207, intron 6 of 15) intron (NM_133207, intron 6 of 15) 148772 NM_145523 227960 Mm.219877 NM_145523 ENSMUSG00000026893 Gca 5133401E04Rik|AI573844 grancalcin 0.012821 0.343949 -0.678825 chr2-317 chr2 127723801 127723957 + 40.6 NA intron (NM_028765, intron 12 of 17) intron (NM_028765, intron 12 of 17) -93599 NM_207681 12125 Mm.453214 NM_009754 ENSMUSG00000027381 Bcl2l11 1500006F24Rik|Bim|Bod BCL2-like 11 (apoptosis facilitator) 0.012821 0.445860 -0.950495 chr16-151 chr16 37309314 37309470 + 40.6 NA Intergenic Intergenic -5195 NM_001114612 207227 Mm.403226 NM_001114611 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|MGC169507|tomosyn-2 syntaxin binding protein 5-like 0.000000 0.375796 -7.689401 chr15-151 chr15 37227578 37227734 + 40.6 NA intron (NM_026496, intron 4 of 15) intron (NM_026496, intron 4 of 15) 50032 NM_026496 252973 Mm.391911 NM_026496 ENSMUSG00000022286 Grhl2 0610015A08Rik|BOM|Tcfcp2l3 grainyhead-like 2 (Drosophila) 0.000000 0.464968 -4.642622 chr9-296 chr9 60887166 60887322 + 40.6 NA Intergenic Intergenic -283127 NM_001083928 21887 Mm.469199 NM_001083927 ENSMUSG00000032280 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 transducin-like enhancer of split 3, homolog of Drosophila E(spl) 0.000000 0.464968 -1.411937 chr2-331 chr2 153605879 153606035 + 40.6 NA Intergenic Intergenic -3713 NM_194357 378700 Mm.55392 NM_194357 ENSMUSG00000068008 Rya3 Lplunc3 antimicrobial peptide RYA3 0.012821 0.522293 -5.564895 chr19-84 chr19 30182817 30182973 + 40.6 NA intron (NM_138595, intron 17 of 24) intron (NM_138595, intron 17 of 24) 58520 NM_138595 104174 Mm.274852 NM_138595 ENSMUSG00000024827 Gldc D030049L12Rik|D19Wsu57e glycine decarboxylase 0.012821 0.496815 -3.793112 chr3-208 chr3 9479932 9480088 + 40.6 NA intron (NM_133218, intron 2 of 8) intron (NM_133218, intron 2 of 8) 93860 NR_015499 320088 Mm.422009 NR_015499 C030034L19Rik A130044O20Rik RIKEN cDNA C030034L19 gene 0.006410 0.464968 -1.763940 chr2-322 chr2 137561008 137561164 + 40.6 NA Intergenic Intergenic -386938 NM_001025431 228662 Mm.153405 NM_001025431 ENSMUSG00000062098 Btbd3 MGC25591|mKIAA0952 BTB (POZ) domain containing 3 0.000000 0.490446 -1.638531 chr2-338 chr2 173365371 173365527 + 40.6 NA Intergenic Intergenic -15060 NM_019806 56491 Mm.260456 NM_019806 ENSMUSG00000054455 Vapb AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b vesicle-associated membrane protein, associated protein B and C 0.006410 0.369427 -1.067073 chr7-203 chr7 109393886 109394042 + 40.6 NA intron (NM_001001326, intron 1 of 19) intron (NM_001001326, intron 1 of 19) 14360 NM_001001326 76954 Mm.252009 NM_001001326 ENSMUSG00000031024 St5 2010004M01Rik|2610305K15Rik suppression of tumorigenicity 5 0.006410 0.509554 -5.202533 chr10-248 chr10 120924059 120924215 + 40.6 NA Intergenic Intergenic -44827 NM_138956 192678 Mm.41265 NM_138956 ENSMUSG00000025795 Rassf3 AW212023|AW322379 Ras association (RalGDS/AF-6) domain family member 3 0.006410 0.484076 3.780459 chr1-371 chr1 10994764 10994920 + 40.6 NA intron (NM_029525, intron 1 of 39) intron (NM_029525, intron 1 of 39) 16164 NM_029525 109294 Mm.123247 XM_001475275 Prex2 6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 0.000000 0.363057 -1.563208 chr9-295 chr9 59970668 59970824 + 40.6 NA intron (NM_001040426, intron 7 of 17) intron (NM_001040426, intron 7 of 17) -31520 NM_172444 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.019231 0.490446 -3.384048 chr2-335 chr2 165096233 165096389 + 40.6 NA TTS (NM_054055) TTS (NM_054055) -4712 NM_029021 74614 Mm.72179 NM_029021 ENSMUSG00000027670 4833422F24Rik OC-STAMP RIKEN cDNA 4833422F24 gene 0.012821 0.522293 -4.091316 chr4-264 chr4 11017396 11017552 + 40.6 NA Intergenic Intergenic -14123 NM_001085493 76947 Mm.275265 XM_131300 ENSMUSG00000050323 2310030N02Rik - RIKEN cDNA 2310030N02 gene 0.012821 0.464968 -3.552892 chr12-238 chr12 31784457 31784613 + 40.6 NA Intergenic Intergenic -66813 NM_008482 16777 Mm.172674 NM_008482 ENSMUSG00000002900 Lamb1 C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1 laminin B1 0.012821 0.452229 -3.614209 chr10-231 chr10 87474613 87474769 + 40.6 NA Intergenic Intergenic -46179 NM_029971 110312 Mm.391436 NM_029971 ENSMUSG00000035383 Pmch A230109K23Rik|MCH pro-melanin-concentrating hormone 0.012821 0.458599 0.716585 chr5-371 chr5 73507960 73508116 + 40.6 NA intron (NM_028194, intron 1 of 62) intron (NM_028194, intron 1 of 62) 27715 NM_028194 72313 Mm.480322 NM_028194 ENSMUSG00000070733 Fryl 2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|AI930088|mKIAA0826 furry homolog-like (Drosophila) 0.012821 0.496815 -3.262073 chr15-168 chr15 92735372 92735528 + 40.6 NA Intergenic Intergenic 310162 NM_001164594 239618 Mm.479306 XM_001481302 Pdzrn4 1110017D07Rik|KIAA3027|LNX4|SAMCAP3L|mKIAA3027 PDZ domain containing RING finger 4 0.019231 0.496815 2.529946 chr6-213 chr6 72654187 72654343 + 40.6 NA intron (NM_009332, intron 3 of 11) intron (NM_009332, intron 3 of 11) 64200 NM_001079822 21415 Mm.440067 NM_001079822 ENSMUSG00000055799 Tcf7l1 Tcf-3|Tcf3|bHLHb21 transcription factor 7-like 1 (T-cell specific, HMG box) 0.006410 0.541401 -5.945960 chr9-307 chr9 84930017 84930173 + 40.6 NA Intergenic Intergenic 193747 NM_001160378 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.012821 0.363057 1.202563 chr19-95 chr19 58324131 58324287 + 40.6 NA intron (NM_010279, intron 5 of 9) intron (NM_010279, intron 5 of 9) 183507 NM_010279 14585 Mm.88367 NM_010279 ENSMUSG00000025089 Gfra1 AU042498 glial cell line derived neurotrophic factor family receptor alpha 1 0.012821 0.439490 -2.544392 chr5-423 chr5 149051325 149051481 + 40.6 NA promoter-TSS (NR_028285) promoter-TSS (NR_028285) -785 NR_028285 70138 Mm.417834 XM_001473363 2210417A02Rik AV081004 RIKEN cDNA 2210417A02 gene 0.038462 0.566879 -7.275670 chr11-342 chr11 119526846 119527002 + 40.6 NA intron (NM_028898, intron 3 of 33) intron (NM_028898, intron 3 of 33) 107840 NM_028898 74370 Mm.209933 NM_028898 ENSMUSG00000025583 Rptor 4932417H02Rik|Raptor|mKIAA1303 regulatory associated protein of MTOR, complex 1 0.000000 0.490446 -5.133352 chr12-259 chr12 79960264 79960420 + 40.6 NA intron (NM_181073, intron 2 of 28) intron (NM_181073, intron 2 of 28) 12340 NM_181073 211945 Mm.478321 XM_126961 ENSMUSG00000060716 Plekhh1 AV308913|C77772|D630024D12Rik|mKIAA1200 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 0.000000 0.420382 2.508848 chr9-302 chr9 68198681 68198837 + 40.6 NA Intergenic Intergenic -254206 NM_013646 19883 Mm.481170 NM_013646 ENSMUSG00000032238 Rora 9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer RAR-related orphan receptor alpha 0.000000 0.407643 3.198231 chr3-260 chr3 149089657 149089813 + 40.6 NA Intergenic Intergenic -197714 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.019231 0.420382 -1.725975 chr18-161 chr18 70113520 70113676 + 40.6 NA intron (NM_001082553, intron 5 of 6) intron (NM_001082553, intron 5 of 6) 62671 NM_201362 381175 Mm.266831 NM_201362 ENSMUSG00000038903 Ccdc68 BC046343|MGC54896 coiled-coil domain containing 68 0.012821 0.420382 -3.228306 chr13-169 chr13 49124635 49124791 + 40.6 NA intron (NM_029361, intron 2 of 27) intron (NM_029361, intron 2 of 27) 35238 NM_029361 75607 Mm.342723 NM_029361 ENSMUSG00000037989 Wnk2 1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760 WNK lysine deficient protein kinase 2 0.019231 0.547771 -2.944939 chr4-270 chr4 45211528 45211684 + 40.6 NA intron (NM_001081172, intron 1 of 15) intron (NM_001081172, intron 1 of 15) 5601 NM_001081172 666060 Mm.24783 NM_001081172 ENSMUSG00000035615 Frmpd1 BC031840|mKIAA0967 FERM and PDZ domain containing 1 0.012821 0.407643 -0.015979 chr17-185 chr17 10299861 10300017 + 40.6 NA intron (NM_027032, intron 4 of 4) intron (NM_027032, intron 4 of 4) -137221 NM_001159517 19317 Mm.393248 NM_001159516 ENSMUSG00000062078 Qk 1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1 quaking 0.006410 0.477707 -2.395482 chr14-77 chr14 7613855 7614011 + 40.6 NA Intergenic Intergenic -153857 NM_028934 74430 Mm.271901 NM_028934 ENSMUSG00000021747 4930452B06Rik 4933406L09Rik|AI854000 RIKEN cDNA 4930452B06 gene 0.000000 0.356688 -9.071424 chr6-208 chr6 58561337 58561493 + 40.6 NA intron (NM_011920, intron 1 of 15) intron (NM_011920, intron 1 of 15) 35166 NM_011920 26357 Mm.333096 NM_011920 ENSMUSG00000029802 Abcg2 ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1 ATP-binding cassette, sub-family G (WHITE), member 2 0.006410 0.382166 -4.958933 chr13-159 chr13 9906601 9906757 + 40.6 NA intron (NM_033269, intron 4 of 4) intron (NM_033269, intron 4 of 4) -142225 NM_144516 66505 Mm.397307 NM_144516 ENSMUSG00000021156 Zmynd11 2210402G22Rik zinc finger, MYND domain containing 11 0.012821 0.445860 -2.465719 chr15-152 chr15 39185030 39185186 + 40.6 NA intron (NM_053271, intron 5 of 26) intron (NM_053271, intron 5 of 26) 156703 NM_053271 116838 Mm.309296 NM_053271 ENSMUSG00000037386 Rims2 2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751 regulating synaptic membrane exocytosis 2 0.019231 0.407643 -1.638531 chr3-216 chr3 32143348 32143504 + 40.6 NA intron (NM_028231, intron 2 of 5) intron (NM_028231, intron 2 of 5) 49846 NM_028231 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik|MGC57945 potassium large conductance calcium-activated channel, subfamily M, beta member 2 0.006410 0.401274 1.538596 chr1-389 chr1 60679636 60679792 + 40.6 NA Intergenic Intergenic -11219 NM_007642 12487 Mm.255003 NM_007642 ENSMUSG00000026012 Cd28 - CD28 antigen 0.012821 0.445860 -1.150701 chr3-247 chr3 121877059 121877215 + 40.6 NA Intergenic Intergenic -68211 NM_172525 214137 Mm.229287 NM_172525 ENSMUSG00000039831 Arhgap29 6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1 Rho GTPase activating protein 29 0.051282 0.452229 -7.928441 chr13-170 chr13 49212935 49213091 + 40.6 NA Intergenic Intergenic 13530 NM_013610 18081 Mm.18503 NM_013610 ENSMUSG00000037966 Ninj1 AU024536 ninjurin 1 0.019231 0.471338 -0.400395 chr5-363 chr5 65650885 65651041 + 40.6 NA intron (NM_031180, intron 1 of 4) intron (NM_031180, intron 1 of 4) 19603 NM_011292 20005 Mm.422908 NM_011292 ENSMUSG00000047215 Rpl9 MGC102393 ribosomal protein L9 0.038462 0.433121 -0.370920 chr1-430 chr1 138675048 138675204 + 40.6 NA intron (NM_030676, intron 8 of 8) intron (NM_030676, intron 8 of 8) 94915 NM_001159769 26424 Mm.16794 NM_001159769 ENSMUSG00000026398 Nr5a2 AU020803|D1Ertd308e|Ftf|LRH-1 nuclear receptor subfamily 5, group A, member 2 0.006410 0.458599 0.808065 chr12-268 chr12 90384548 90384704 + 40.6 NA intron (NM_172544, intron 15 of 19) intron (NM_172544, intron 15 of 19) 759202 NM_010050 13371 Mm.408815 NM_010050 ENSMUSG00000007682 Dio2 5DII|AI324267|DIOII deiodinase, iodothyronine, type II 0.006410 0.407643 1.950971 chr7-199 chr7 87950580 87950736 + 40.6 NA intron (NM_001081414, intron 9 of 9) intron (NM_001081414, intron 9 of 9) -202626 NM_009982 13032 Mm.322945 NM_009982 ENSMUSG00000030560 Ctsc AI047818|DPP1|DPPI cathepsin C 0.012821 0.388535 -3.642712 chr9-318 chr9 117007848 117008004 + 40.6 NA intron (NM_001172123, intron 1 of 14) intron (NM_001172123, intron 1 of 14) 93255 NM_001172123 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.000000 0.458599 -2.740509 chr19-83 chr19 29550538 29550694 + 40.6 NA Intergenic Intergenic 37368 NR_015567 77779 Mm.458738 NR_015567 A930007I19Rik - RIKEN cDNA A930007I19 gene 0.000000 0.433121 -7.742301 chr1-453 chr1 187442165 187442321 + 40.6 NA Intergenic Intergenic 244150 NR_033600 114668 Mm.379303 NR_033600 5033404E19Rik - RIKEN cDNA 5033404E19 gene 0.000000 0.464968 -5.058862 chr3-255 chr3 138780838 138780994 + 40.6 NA intron (NM_019571, intron 1 of 7) intron (NM_019571, intron 1 of 7) 101335 NM_019571 56224 Mm.31927 NM_019571 ENSMUSG00000028152 Tspan5 2810455A09Rik|4930505M03Rik|AU024142|NET-4|Tm4sf9 tetraspanin 5 0.019231 0.433121 1.358407 chr6-224 chr6 112988554 112988710 + 40.6 NA Intergenic RLTR28|LTR|ERVL -23471 NM_008188 14911 Mm.781 NM_008188 ENSMUSG00000030264 Thumpd3 AW556087|Gt(ROSA)26asSor|Gtrosa26as THUMP domain containing 3 0.000000 0.496815 -5.702188 chr11-335 chr11 113555320 113555476 + 40.6 NA intron (NM_001163346, intron 1 of 1) intron (NM_001163346, intron 1 of 1) 11852 NM_020006 56699 Mm.293378 NM_001163346 ENSMUSG00000041598 Cdc42ep4 1500041M20Rik|Borg4|CEP4 CDC42 effector protein (Rho GTPase binding) 4 0.025641 0.592357 -3.839955 chr12-245 chr12 47509618 47509774 + 40.6 NA Intergenic Intergenic 185036 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.006410 0.445860 1.853906 chr8-235 chr8 126835379 126835535 + 40.6 NA promoter-TSS (NM_172288) promoter-TSS (NM_172288) -102 NM_172288 234865 Mm.267812 NM_172288 ENSMUSG00000039509 Nup133 mermaid nucleoporin 133 0.102564 0.636943 1.777578 chr9-272 chr9 13625104 13625260 + 40.6 NA Intergenic Intergenic 47059 NM_176836 72826 Mm.246174 NM_176836 ENSMUSG00000037808 Fam76b 2810485I05Rik|C78303 family with sequence similarity 76, member B 0.006410 0.452229 -5.443125 chr1-456 chr1 191195756 191195912 + 40.6 NA Intergenic Intergenic -150854 NR_027627 16526 Mm.33304 NM_001159850 ENSMUSG00000037624 Kcnk2 A430027H14Rik|AI848635|TREK-1 potassium channel, subfamily K, member 2 0.044872 0.496815 -4.774666 chr16-154 chr16 43013427 43013583 + 40.6 NA Intergenic Intergenic 138594 NR_002445 170658 Mm.375824 NR_002445 BC002163 - NADH dehydrogenase Fe-S protein 5 pseudogene 0.000000 0.318471 -0.315957 chr5-376 chr5 92694069 92694225 + 40.6 NA intron (NM_145562, intron 3 of 3) intron (NM_145562, intron 3 of 3) 101248 NM_145562 231440 Mm.5002 NM_145562 ENSMUSG00000034981 Parm1 2210012L08Rik|9130213B05Rik|W91666 prostate androgen-regulated mucin-like protein 1 0.006410 0.496815 -4.815064 chr2-306 chr2 91450941 91451097 + 40.6 NA promoter-TSS (NM_001033451) promoter-TSS (NM_001033451) 63 NR_027371 228359 Mm.463444 NM_001145902 ENSMUSG00000027247 Arhgap1 B230365D05Rik|C76222|Cdc42GAP|MGC101942|MGC7050|RP23-12H6.2|p50rhoGAP Rho GTPase activating protein 1 0.070513 0.636943 -8.782184 chr12-275 chr12 106645093 106645249 + 40.6 NA Intergenic Intergenic 233859 NM_001029843 22367 Mm.2981 NM_001029843 ENSMUSG00000021115 Vrk1 51PK vaccinia related kinase 1 0.012821 0.496815 -0.239484 chrX-33 chrX 78993727 78993883 + 40.6 NA Intergenic Intergenic -207783 NM_007868 13405 Mm.416750 NM_007868 ENSMUSG00000045103 Dmd DXSmh7|DXSmh9|Dp427|mdx|pke dystrophin, muscular dystrophy 0.000000 0.337580 -1.244438 chr10-208 chr10 18548543 18548699 + 40.6 NA Intergenic Intergenic 14135 NM_022032 64058 Mm.28209 NM_022032 ENSMUSG00000019851 Perp 1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW PERP, TP53 apoptosis effector 0.000000 0.439490 -4.457898 chr17-197 chr17 31555494 31555650 + 40.6 NA Intergenic Intergenic 28930 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Msk|Sik|Snf1lk salt inducible kinase 1 0.019231 0.592357 -3.579683 chr1-407 chr1 82718294 82718450 + 40.6 NA promoter-TSS (NM_010472) promoter-TSS (NM_010472) -134 NM_010472 15463 Mm.433409 NM_010472 ENSMUSG00000026159 Agfg1 AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip ArfGAP with FG repeats 1 0.070513 0.662420 -4.985312 chr16-149 chr16 30637440 30637596 + 40.6 NA Intergenic (CTGTG)n|Simple_repeat|Simple_repeat 118049 NM_177632 224093 Mm.28244 NM_177632 ENSMUSG00000046546 Fam43a Tuf1 family with sequence similarity 43, member A 0.000000 0.605096 0.652260 chr10-247 chr10 119418227 119418383 + 40.6 NA intron (NM_133442, intron 12 of 21) intron (NM_133442, intron 12 of 21) 97720 NM_080446 117599 Mm.214703 NM_080446 ENSMUSG00000020228 Helb AI447783|D10Ertd664e helicase (DNA) B 0.006410 0.407643 -3.511496 chr6-233 chr6 133148559 133148715 + 40.6 NA Intergenic ETnERV2|LTR|ERVK 77706 NM_001163445 381820 Mm.291762 XM_001480602 2700089E24Rik AI662692 RIKEN cDNA 2700089E24 gene 0.000000 0.375796 -0.443933 chr4-304 chr4 107898469 107898625 + 40.6 NA 3' UTR (NM_024198, exon 3 of 3) 3' UTR (NM_024198, exon 3 of 3) 6098 NM_024198 67305 Mm.20164 NM_024198 ENSMUSG00000028597 Gpx7 3110050F08Rik|AI327032|GPX6 glutathione peroxidase 7 0.006410 0.503185 -4.374805 chr3-225 chr3 81300490 81300646 + 40.6 NA TTS (NM_019971) TTS (NM_019971) 178226 NM_019971 54635 Mm.331089 NM_019971 ENSMUSG00000028019 Pdgfc 1110064L01Rik|AI647969|PDGF-C platelet-derived growth factor, C polypeptide 0.006410 0.477707 -4.853086 chr10-217 chr10 43417548 43417704 + 40.6 NA Intergenic Intergenic 135785 NR_033558 414125 Mm.244305 NR_033558 F830002L21Rik - RIKEN cDNA F830002L21 gene 0.006410 0.528662 -4.593112 chr5-414 chr5 141105067 141105223 + 40.6 NA Intergenic Intergenic -22240 NM_010302 14673 Mm.478529 NM_010302 ENSMUSG00000000149 Gna12 AI414047|AI504261|Galpha12|MGC130498 guanine nucleotide binding protein, alpha 12 0.032051 0.541401 -3.417777 chr8-220 chr8 105428080 105428236 + 40.6 NA Intergenic RLTR12B|LTR|ERVK 246082 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|MGC25339 cadherin 11 0.006410 0.535032 -5.465322 chr12-234 chr12 26154642 26154798 + 40.6 NA Intergenic Intergenic -469548 NM_010496 15902 Mm.476766 NM_010496 ENSMUSG00000020644 Id2 AI255428|C78922|Idb2|bHLHb26 inhibitor of DNA binding 2 0.006410 0.350318 -0.149027 chr10-218 chr10 45065587 45065743 + 40.6 NA 3' UTR (NM_001031772, exon 5 of 5) 3' UTR (NM_001031772, exon 5 of 5) 41489 NM_024285 23828 Mm.332793 NM_024285 ENSMUSG00000071317 Bves Pop1|Popdc1|mBVES blood vessel epicardial substance 0.000000 0.407643 4.319806 chr11-307 chr11 75594411 75594567 + 40.6 NA intron (NM_007873, intron 5 of 8) intron (NM_007873, intron 5 of 8) 17763 NM_007873 13447 Mm.5137 NM_007873 ENSMUSG00000020848 Doc2b - double C2, beta 0.006410 0.509554 -4.051822 chr18-162 chr18 73962189 73962345 + 40.6 NA Intergenic RMER6A|LTR|ERVK -21506 NM_145494 107029 Mm.36817 NM_145494 ENSMUSG00000024556 Me2 AW120568|D030040L20Rik|NAD-ME malic enzyme 2, NAD(+)-dependent, mitochondrial 0.000000 0.388535 -4.853086 chr16-147 chr16 25497681 25497837 + 40.6 NA Intergenic Intergenic -101354 NM_001127261 22061 Mm.20894 NM_001127259 ENSMUSG00000022510 Trp63 AI462811|Ket|MGC115972|P51/P63|P63|P73l|Tp63|Trp53rp1 transformation related protein 63 0.000000 0.401274 -4.691038 chr15-143 chr15 12141212 12141368 + 40.6 NA Intergenic Intergenic -8528 NM_172958 268783 Mm.54460 NM_172958 ENSMUSG00000039458 Mtmr12 3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682 myotubularin related protein 12 0.044872 0.547771 -5.285039 chr1-379 chr1 39491852 39492008 + 40.6 NA TTS (NM_028043) TTS (NM_028043) 1456 NR_028555 100217461 NR_028555 Snord89 MBII-289 small nucleolar RNA, C/D box 89 0.006410 0.407643 1.306082 chr4-265 chr4 13771697 13771853 + 40.6 NA intron (NM_001111027, intron 5 of 11) intron (NM_001111027, intron 5 of 11) 59847 NM_009822 12395 Mm.470961 NM_001111026 ENSMUSG00000006586 Runx1t1 Cbfa2t1h|ETO|MTG8 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.012821 0.433121 5.759085 chr6-214 chr6 79535963 79536119 + 40.6 NA Intergenic Lx5|LINE|L1 -211498 NM_001190732 100463512 Mm.461086 NM_001190732 Mtrnr2l - Mtrnr2-like 0.000000 0.356688 1.179223 chr17-183 chr17 8110613 8110769 + 40.6 NA Intergenic Intergenic -11295 NM_018819 55951 Mm.288510 NM_018819 ENSMUSG00000023861 Brp44l 0610006G08Rik|3830411I18Rik|MGC117549 brain protein 44-like 0.006410 0.509554 -5.983538 chr1-400 chr1 75254722 75254878 + 40.6 NA Intergenic Intergenic -3644 NM_007463 11790 Mm.275397 NM_001085370 ENSMUSG00000026207 Speg AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297 SPEG complex locus 0.019231 0.579618 -4.576382 chr12-278 chr12 108693332 108693488 + 40.6 NA intron (NM_001159910, intron 1 of 5) intron (NM_001159910, intron 1 of 5) 29814 NM_001159910 668158 Mm.233524 NM_001159910 Ccdc85c EG668158|Gm265|Gm9010 coiled-coil domain containing 85C 0.038462 0.592357 -1.494515 chr12-233 chr12 12903709 12903865 + 40.6 NA Intergenic Intergenic 64035 NM_008709 18109 Mm.16469 NM_008709 ENSMUSG00000037169 Mycn N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) 0.019231 0.617834 -1.032090 chr5-385 chr5 106188491 106188647 + 40.6 NA Intergenic Intergenic 71700 NM_018759 54367 Mm.248876 NM_018759 ENSMUSG00000029290 Zfp326 5730470H14Rik|ZAN75|Znf326 zinc finger protein 326 0.006410 0.554140 3.417550 chr4-336 chr4 152818789 152818945 + 40.6 NA promoter-TSS (NM_177673) promoter-TSS (NM_177673) 14 NM_007859 13368 Mm.388918 NM_007859 ENSMUSG00000029027 Dffb 40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff DNA fragmentation factor, beta subunit 0.089744 0.605096 1.757088 chr9-277 chr9 25204543 25204699 + 40.6 NA Intergenic Intergenic -26421 NM_026189 67484 Mm.112977 NM_026189 ENSMUSG00000036611 Eepd1 2310005P05Rik|AI481005 endonuclease/exonuclease/phosphatase family domain containing 1 0.000000 0.471338 1.064636 chr1-431 chr1 138703232 138703388 + 40.6 NA intron (NM_030676, intron 7 of 8) intron (NM_030676, intron 7 of 8) 66731 NM_001159769 26424 Mm.16794 NM_001159769 ENSMUSG00000026398 Nr5a2 AU020803|D1Ertd308e|Ftf|LRH-1 nuclear receptor subfamily 5, group A, member 2 0.025641 0.509554 -3.122461 chr5-362 chr5 54276415 54276571 + 40.6 NA Intergenic Intergenic -10277 NM_001081103 116873 Mm.265985 NM_001081103 ENSMUSG00000039156 Stim2 - stromal interaction molecule 2 0.006410 0.369427 5.733326 chr18-156 chr18 55073104 55073260 + 40.6 NA intron (NM_175751, intron 2 of 9) intron (NM_175751, intron 2 of 9) 42367 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.006410 0.471338 -5.508322 chr2-293 chr2 52747193 52747349 + 40.6 NA intron (NM_172409, intron 1 of 26) intron (NM_172409, intron 1 of 26) 67395 NM_172409 71409 Mm.394427 NM_172409 ENSMUSG00000036053 Fmnl2 5430425K04Rik|Man formin-like 2 0.012821 0.452229 -1.272354 chr2-307 chr2 92548313 92548469 + 40.6 NA Intergenic Intergenic 147846 NM_023850 76969 Mm.38021 NM_023850 ENSMUSG00000027221 Chst1 2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 0.006410 0.522293 -1.804419 chr7-224 chr7 131791864 131792020 + 40.6 NA Intergenic L1M5|LINE|L1 -12860 NM_173410 233919 Mm.208740 NM_173410 ENSMUSG00000040125 Gpr26 9630036A11Rik|A730021D22 G protein-coupled receptor 26 0.006410 0.420382 3.179486 chr12-269 chr12 92211257 92211413 + 40.6 NA TTS (NM_011344) TTS (NM_011344) -19342 NM_175367 108800 Mm.23125 NM_175367 ENSMUSG00000020961 Ston2 4933401N24Rik|AI425999|AW544599 stonin 2 0.000000 0.407643 -3.022900 chr9-287 chr9 49611823 49611979 + 40.6 NA Intergenic Intergenic -60602 NM_010875 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.019231 0.464968 -4.576381 chr12-260 chr12 81519073 81519229 + 40.6 NA intron (NM_001081421, intron 14 of 14) intron (NM_001081421, intron 14 of 14) 43558 NM_007951 13877 Mm.378913 NM_007951 ENSMUSG00000021131 Erh MGC103398|MGC130271|MGC130272|Mer|Prei1 enhancer of rudimentary homolog (Drosophila) 0.019231 0.477707 -0.622579 chr16-159 chr16 52812406 52812562 + 40.6 NA Intergenic Intergenic -440139 NM_009655 11658 Mm.288282 NM_009655 ENSMUSG00000022636 Alcam AI853494|BEN|CD166|DM-GRASP|MGC27910|MuSC|SC1 activated leukocyte cell adhesion molecule 0.000000 0.414013 -9.661287 chr1-408 chr1 88050989 88051145 + 40.6 NA intron (NM_030184, intron 19 of 24) intron (NM_030184, intron 19 of 24) 65082 NM_027456 78795 Mm.379264 NM_027456 ENSMUSG00000062590 Armc9 3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik armadillo repeat containing 9 0.019231 0.490446 1.771313 chr8-244 chr8 131706790 131706946 + 40.6 NA Intergenic Intergenic 135125 NM_010578 16412 Mm.263396 NM_010578 ENSMUSG00000025809 Itgb1 4633401G24Rik|AA409975|AA960159|CD29|Fnrb|gpIIa integrin beta 1 (fibronectin receptor beta) 0.000000 0.324841 1.790254 chr14-78 chr14 8112720 8112876 + 40.6 NA Intergenic Intergenic -565082 NR_030680 100042415 Mm.235938 NR_030680 Gm3833 - meiotic nuclear divisions 1 homolog pseudogene 0.000000 0.458599 2.311639 chr1-459 chr1 194446272 194446428 + 40.6 NA intron (NM_144881, intron 3 of 11) intron (NM_144881, intron 3 of 11) 25593 NM_144881 226861 Mm.145857 NM_144881 ENSMUSG00000037375 Hhat 2810432O22Rik|AI462858|MGC11697|Skn hedgehog acyltransferase 0.025641 0.388535 -7.560236 chr3-227 chr3 84613988 84614144 + 40.6 NA intron (NM_001081093, intron 4 of 8) intron (NM_001081093, intron 4 of 8) -47710 NM_001033301 229474 Mm.481803 NM_001033301 ENSMUSG00000041842 Fhdc1 6330505N24Rik|Gm126 FH2 domain containing 1 0.012821 0.445860 -6.950953 chr13-171 chr13 49249619 49249775 + 40.6 NA intron (NM_025491, intron 3 of 4) intron (NM_025491, intron 3 of 4) 10403 NM_025491 66329 Mm.34308 NM_025491 ENSMUSG00000021384 Susd3 1700017I11Rik|2810440J20Rik sushi domain containing 3 0.025641 0.566879 -1.638532 chr19-79 chr19 16197623 16197779 + 40.6 NA Intergenic Intergenic -2148 NM_008139 14682 Mm.441601 NM_008139 ENSMUSG00000024639 Gnaq 1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI guanine nucleotide binding protein, alpha q polypeptide 0.006410 0.388535 -2.032000 chr12-246 chr12 52346490 52346646 + 40.6 NA intron (NM_029825, intron 15 of 24) intron (NM_029825, intron 15 of 24) 47369 NM_029825 76983 Mm.216511 NM_029825 ENSMUSG00000020952 Scfd1 3110021P21Rik|RA410|STXBP1L2 Sec1 family domain containing 1 0.038462 0.509554 -3.407387 chrX-32 chrX 39791322 39791478 + 40.6 NA Intergenic RMER6D|LTR|ERVK -271987 NM_011855 23963 Mm.327698 NM_011855 ENSMUSG00000016150 Odz1 Odz2|TCAP-1|Ten-m1 odd Oz/ten-m homolog 1 (Drosophila) 0.000000 0.394904 -0.466557 chr1-421 chr1 121432257 121432413 + 40.6 NA intron (NM_001113416, intron 14 of 16) intron (NM_001113416, intron 14 of 16) 44211 NM_001113416 226352 Mm.253156 NM_001113416 ENSMUSG00000026383 Epb4.1l5 1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb41l5|Lulu1|NBL5 erythrocyte protein band 4.1-like 5 0.019231 0.426752 -1.620129 chr10-219 chr10 45591368 45591524 + 40.6 NA Intergenic Intergenic 325203 NM_172473 209462 Mm.458633 NM_172473 ENSMUSG00000038822 Hace1 1700042J16Rik|A730034A22Rik|BC025474|KIAA1320 HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 0.000000 0.382166 4.933199 chr9-294 chr9 57218984 57219140 + 40.6 NA intron (NM_176831, intron 4 of 6) intron (NM_176831, intron 4 of 6) 19189 NM_176831 66812 Mm.250508 NM_176831 ENSMUSG00000063849 Ppcdc 1810057I13Rik|8430432M10Rik|MGC102190 phosphopantothenoylcysteine decarboxylase 0.025641 0.592357 -0.010261 chr3-234 chr3 100986711 100986867 + 40.6 NA intron (NM_178594, intron 1 of 5) intron (NM_178594, intron 1 of 5) 32270 NM_178594 242122 Mm.137467 NM_178594 ENSMUSG00000051076 Vtcn1 B7h4|B7s1|B7x|BC032925|MGC41287 V-set domain containing T cell activation inhibitor 1 0.006410 0.439490 -3.672450 chr5-377 chr5 94095475 94095631 + 40.6 NA Intergenic Intergenic 24673 NM_175270 78088 Mm.477202 NM_175270 ENSMUSG00000045314 Ankrd56 5730467H21Rik ankyrin repeat domain 56 0.000000 0.464968 -5.881091 chr11-336 chr11 114638982 114639138 + 40.6 NA Intergenic Intergenic 24047 NM_181749 217302 Mm.269127 NM_181749 ENSMUSG00000034677 Gpr142 PGR2 G protein-coupled receptor 142 0.025641 0.560510 -3.842489 chr19-92 chr19 53156273 53156429 + 40.6 NA Intergenic MER2|DNA|MER2_type -37405 NM_001164101 27360 Mm.426080 NM_001164099 ENSMUSG00000025026 Add3 AI463285|R75380 adducin 3 (gamma) 0.000000 0.458599 -3.845236 chr9-310 chr9 102911828 102911984 + 40.6 NA intron (NM_033314, intron 3 of 13) intron (NM_033314, intron 3 of 13) 45268 NM_033314 24059 Mm.412758 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2|mPgt solute carrier organic anion transporter family, member 2a1 0.019231 0.433121 1.771313 chr3-233 chr3 95629982 95630138 + 40.6 NA intron (NM_021281, intron 4 of 7) intron (NM_021281, intron 4 of 7) -15020 NM_026489 67981 Mm.179050 NM_026489 ENSMUSG00000028109 Hormad1 4921522K05Rik|Nohma HORMA domain containing 1 0.006410 0.496815 0.652260 chr14-83 chr14 29090637 29090793 + 40.6 NA intron (NM_001083616, intron 3 of 46) intron (NM_001083616, intron 3 of 46) 91780 NM_001083616 12289 Mm.9772 NM_001083616 ENSMUSG00000015968 Cacna1d 8430418G19Rik|C79217|Cacnl1a2|Cchl1a|Cchl1a2|D-LTCC calcium channel, voltage-dependent, L type, alpha 1D subunit 0.019231 0.490446 -0.315286 chr4-283 chr4 81720371 81720527 + 40.6 NA Intergenic Intergenic 256090 NM_001113210 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.000000 0.445860 -2.467345 chr1-428 chr1 136895623 136895779 + 40.6 NA intron (NM_001033409, intron 1 of 17) intron (NM_001033409, intron 1 of 17) 25986 NM_001033409 329252 Mm.279594 NM_001033409 ENSMUSG00000042793 Lgr6 A530037C04Rik|D830026M09 leucine-rich repeat-containing G protein-coupled receptor 6 0.006410 0.535032 0.935805 chr15-148 chr15 32441577 32441733 + 40.6 NA intron (NM_009154, intron 5 of 22) intron (NM_009154, intron 5 of 22) -250338 NR_028575 66835 Mm.391938 XM_001475347 Snord123 0610007N19Rik small nucleolar RNA, C/D box 123 0.012821 0.445860 -9.649813 chr2-275 chr2 26018085 26018241 + 40.6 NA Intergenic L1M4|LINE|L1 10402 NM_001039653 16871 Mm.386765 NM_001039653 ENSMUSG00000026934 Lhx3 Lim3|P-LIM|mLIM3|mLim-3 LIM homeobox protein 3 0.019231 0.452229 -2.284289 chr4-318 chr4 130756243 130756399 + 40.6 NA Intergenic Intergenic 354033 NM_011214 19273 Mm.4860 NM_001083119 ENSMUSG00000028909 Ptpru Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda protein tyrosine phosphatase, receptor type, U 0.025641 0.464968 -4.112295 chr5-402 chr5 129085291 129085447 + 40.6 NA intron (NM_001081388, intron 19 of 21) intron (NM_001081388, intron 19 of 21) 34416 NM_021311 57749 Mm.272720 NM_021311 ENSMUSG00000029423 Piwil1 MGC150073|MIWI piwi-like homolog 1 (Drosophila) 0.000000 0.471338 1.359528 chr5-409 chr5 136052981 136053137 + 40.6 NA intron (NM_029659, intron 3 of 7) intron (NM_029659, intron 3 of 7) 9859 NM_029659 76571 Mm.247666 NM_029659 ENSMUSG00000019178 Styxl1 1700011C14Rik|Dusp24|Mkstyx serine/threonine/tyrosine interacting-like 1 0.012821 0.490446 -6.737555 chr3-254 chr3 130719703 130719749 + 40.6 NA promoter-TSS (NM_026724) promoter-TSS (NM_026724) -263 NM_026724 68436 Mm.140568 NM_001005859 ENSMUSG00000062006 Rpl34 1100001I22Rik|MGC103270 ribosomal protein L34 0.043478 0.553191 -12.177313 chr2-336 chr2 170718212 170718368 + 40.6 NA Intergenic RSINE1|SINE|B4 295279 NM_001163686 76829 Mm.41633 NM_001163686 ENSMUSG00000027560 Dok5 2700055C10Rik docking protein 5 0.000000 0.433121 -4.096613 chr11-310 chr11 79607273 79607429 + 40.6 NA Intergenic MLT1D|LTR|MaLR 64757 NR_029959 723853 NR_029959 Mir365-2 Mirn365-2 microRNA 365-2 0.012821 0.439490 1.637098 chr3-245 chr3 118483019 118483175 + 40.6 NA Intergenic Intergenic 57237 NR_029551 387155 NR_029551 Mir137 Mirn137|mmu-mir-137 microRNA 137 0.000000 0.343949 2.767828 chr4-293 chr4 96641544 96641700 + 40.6 NA Intergenic Intergenic -364444 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 OTTMUSG00000008003 predicted gene 12695 0.000000 0.363057 -2.541862 chr4-303 chr4 107885604 107885760 + 40.6 NA Intergenic Intergenic -4401 NM_001099303 545667 Mm.380025 XM_620088 ENSMUSG00000059816 Fam159a OTTMUSG00000008243 family with sequence similarity 159, member A 0.038462 0.611465 -0.395048 chr9-268 chr9 3858469 3858625 + 40.6 NA intron (NM_001033322, intron 6 of 7) intron (NM_001033322, intron 6 of 7) 326194 NM_001033322 234889 Mm.435507 NM_001033322 ENSMUSG00000041624 Gucy1a2 9430053E15 guanylate cyclase 1, soluble, alpha 2 0.000000 0.458599 -4.134727 chr5-342 chr5 8987380 8987536 + 40.6 NA intron (NM_023733, intron 7 of 17) intron (NM_023733, intron 7 of 17) 15694 NM_023733 74114 Mm.28197 NM_023733 ENSMUSG00000003623 Crot 1200003H03Rik carnitine O-octanoyltransferase 0.006410 0.439490 0.898341 chr7-217 chr7 124061946 124062102 + 40.6 NA Intergenic Intergenic -770427 NM_001081329 210162 Mm.135397 NM_001081329 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 0.000000 0.522293 -4.043849 chr1-391 chr1 61148076 61148091 + 40.6 NA Intergenic Intergenic 225624 NM_017480 54167 Mm.42044 NM_017480 ENSMUSG00000026009 Icos AILIM|H4|Ly115 inducible T-cell co-stimulator 0.066667 0.625000 -25.021273 chr17-204 chr17 51898009 51898165 + 40.6 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat -169604 NM_001031811 211468 Mm.462650 NM_001031811 ENSMUSG00000073383 Kcnh8 C130090D05Rik|ELK|ELK1|ELK3|Kv12.1 potassium voltage-gated channel, subfamily H (eag-related), member 8 0.006410 0.445860 -4.563593 chr16-166 chr16 88624359 88624515 + 40.6 NA Intergenic RMER19A|LTR|ERVK 6717 NM_183189 268905 Mm.206668 NM_183189 ENSMUSG00000056350 Krtap13-1 AA589563|KAP13.1|MGC41371 keratin associated protein 13-1 0.012821 0.535032 -2.494933 chr13-189 chr13 101193319 101193475 + 40.6 NA intron (NM_001081061, intron 5 of 38) intron (NM_001081061, intron 5 of 38) 10930 NM_001081061 544971 Mm.288546 XM_001474306 ENSMUSG00000049658 Bdp1 AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|KIAA1241|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 0.012821 0.407643 -0.881733 chr4-275 chr4 53875473 53875629 + 40.6 NA intron (NM_028053, intron 5 of 5) intron (NM_028053, intron 5 of 5) 28407 NM_028053 52076 Mm.27184 NM_028053 ENSMUSG00000028420 Tmem38b 1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b transmembrane protein 38B 0.012821 0.439490 -0.943604 chr8-221 chr8 109126017 109126173 + 40.6 NA exon (NM_145404, exon 7 of 18) exon (NM_145404, exon 7 of 18) 25913 NM_145404 214572 Mm.446217 NM_145404 ENSMUSG00000060098 Prmt7 4933402B05Rik|BC006705|MGC7929 protein arginine N-methyltransferase 7 0.038462 0.573248 -2.590450 chr7-193 chr7 79393783 79393939 + 40.6 NA Intergenic Intergenic 15085 NR_029818 723968 NR_029818 Mir9-3 Mirn9-3|mmu-mir-9-3 microRNA 9-3 0.006410 0.598726 -5.008650 chr1-443 chr1 172173647 172173803 + 40.6 NA intron (NM_001109985, intron 6 of 9) intron (NM_001109985, intron 6 of 9) 28190 NM_001039593 76925 Mm.33631 NM_001039593 ENSMUSG00000042800 1700015E13Rik MGC118338 RIKEN cDNA 1700015E13 gene 0.006410 0.356688 -6.294220 chr1-566 chr1 179295849 179296005 + 35.6 NA Intergenic Intergenic 13432 NM_013915 30928 Mm.480309 NM_001012330 ENSMUSG00000063659 Zfp238 RP58|Znf238 zinc finger protein 238 0.025641 0.388535 -2.310200 chr13-220 chr13 48449111 48449267 + 35.6 NA Intergenic Intergenic 76158 NM_001164575 67911 Mm.251375 NM_001164575 ENSMUSG00000050954 Zfp169 1700025J14Rik|4930429A13Rik|BE688704 zinc finger protein 169 0.025641 0.592357 -10.465145 chr7-282 chr7 122357192 122357348 + 35.6 NA intron (NM_008855, intron 9 of 16) intron (NM_008855, intron 9 of 16) -105621 NM_019430 54376 Mm.444212 NM_019430 ENSMUSG00000066189 Cacng3 - calcium channel, voltage-dependent, gamma subunit 3 0.012821 0.439490 -4.463717 chr14-113 chr14 31362035 31362191 + 35.6 NA intron (NM_001081221, intron 5 of 20) intron (NM_001081221, intron 5 of 20) 19584 NM_001081221 319955 Mm.318310 NM_001081221 ENSMUSG00000054051 Ercc6 4732403I04|C130058G22Rik|CSB excision repair cross-complementing rodent repair deficiency, complementation group 6 0.006410 0.375796 -5.919250 chr3-318 chr3 100947872 100948028 + 35.6 NA Intergenic ORR1D2|LTR|MaLR -6569 NM_178594 242122 Mm.137467 NM_178594 ENSMUSG00000051076 Vtcn1 B7h4|B7s1|B7x|BC032925|MGC41287 V-set domain containing T cell activation inhibitor 1 0.006410 0.464968 1.056416 chrX-48 chrX 129550432 129550588 + 35.6 NA intron (NM_028947, intron 6 of 9) intron (NM_028947, intron 6 of 9) 16660 NM_028947 74448 Mm.159203 XM_136037 ENSMUSG00000052549 Arl13a 4933422M21Rik|Arl13|MGC118383 ADP-ribosylation factor-like 13A 0.000000 0.375796 -4.581078 chr11-362 chr11 4656024 4656180 + 35.6 NA Intergenic Intergenic -9321 NM_138948 192650 Mm.207056 NM_138948 ENSMUSG00000009075 Cabp7 MGC129428|MGC129429 calcium binding protein 7 0.025641 0.496815 1.082406 chr2-451 chr2 179712642 179712798 + 35.6 NA intron (NM_009867, intron 3 of 15) intron (NM_009867, intron 3 of 15) 193334 NM_001081092 228980 Mm.235542 NM_001081092 ENSMUSG00000039117 Taf4a 135kDa|AI450312|TAFII130|TAFII135|Taf2c1 TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor 0.012821 0.445860 -3.550224 chr15-175 chr15 12029661 12029817 + 35.6 NA Intergenic Intergenic -32836 NM_011767 22763 Mm.273496 NM_011767 ENSMUSG00000022201 Zfr C920030H05Rik|MGC176100 zinc finger RNA binding protein 0.000000 0.509554 1.535135 chr12-292 chr12 25818743 25818899 + 35.6 NA Intergenic Intergenic -133649 NM_010496 15902 Mm.476766 NM_010496 ENSMUSG00000020644 Id2 AI255428|C78922|Idb2|bHLHb26 inhibitor of DNA binding 2 0.006410 0.496815 -7.777128 chr18-192 chr18 61757850 61758006 + 35.6 NA Intergenic Intergenic 15335 NR_029557 387163 NR_029557 Mir145 Mirn145|mmu-mir-145 microRNA 145 0.044872 0.592357 -1.825401 chr19-98 chr19 3674703 3674859 + 35.6 NA intron (NM_008513, intron 1 of 22) intron (NM_008513, intron 1 of 22) 11783 NM_008513 16973 Mm.274581 NM_008513 ENSMUSG00000024913 Lrp5 BMND1|HBM|KIAA4142|LR3|LRP7|OPPG|mKIAA4142 low density lipoprotein receptor-related protein 5 0.000000 0.490446 -2.334517 chr4-390 chr4 89929930 89930086 + 35.6 NA Intergenic Intergenic -76676 NR_033610 619842 NR_033610 Gm12633 OTTMUSG00000007790 zinc finger protein 352 pseudogene 0.006410 0.452229 -0.288370 chr6-322 chr6 145556522 145556678 + 35.6 NA Intergenic Intergenic -16521 NM_009449 22147 Mm.270295 NM_009449 ENSMUSG00000067338 Tuba3b M[a]7|Tuba3a|Tuba7 tubulin, alpha 3B 0.012821 0.471338 -4.445676 chr17-288 chr17 90439584 90439740 + 35.6 NA intron (NM_177284, intron 15 of 20) intron (NM_177284, intron 15 of 20) 561459 NM_177284 18189 Mm.480021 NM_020252 ENSMUSG00000024109 Nrxn1 1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578 neurexin I 0.012821 0.337580 -3.278025 chr18-167 chr18 5565403 5565559 + 35.6 NA intron (NR_033552, intron 3 of 6) intron (NR_033552, intron 3 of 6) -26407 NM_011546 21417 Mm.3929 NM_011546 ENSMUSG00000024238 Zeb1 3110032K11Rik|AREB6|BZP|MEB1|Nil2|Tcf18|Tcf8|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1 zinc finger E-box binding homeobox 1 0.012821 0.394904 8.338809 chr8-296 chr8 118838078 118838234 + 35.6 NA Intergenic Intergenic -245285 NM_001025577 17132 Mm.439772 NM_001025577 ENSMUSG00000055435 Maf 2810401A20Rik|A230108G15Rik|AW047063|c-maf avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog 0.000000 0.401274 0.017327 chr2-397 chr2 79375998 79376154 + 35.6 NA Intergenic Intergenic -60187 NM_080558 70599 Mm.272881 NM_080558 ENSMUSG00000027007 Ssfa2 5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927 sperm specific antigen 2 0.019231 0.445860 1.358406 chr2-366 chr2 37599498 37599654 + 35.6 NA intron (NM_001163566, intron 1 of 12) intron (NM_001163566, intron 1 of 12) 1319 NM_001163566 241324 Mm.392369 XM_140952 Crb2 5930402A21|BC043114 crumbs homolog 2 (Drosophila) 0.006410 0.535032 -0.593060 chr3-328 chr3 116375417 116375573 + 35.6 NA intron (NM_001080818, intron 4 of 15) intron (NM_001080818, intron 4 of 15) 40541 NM_001080818 229776 Mm.17647 NM_001080818 ENSMUSG00000033502 Cdc14a A830059A17Rik|CDC14A2|CDC14a1|Cdc14 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 0.019231 0.509554 2.641073 chr1-525 chr1 107818235 107818391 + 35.6 NA 5' UTR (NM_001122676, exon 1 of 14) 5' UTR (NM_001122676, exon 1 of 14) 361 NM_001122675 227449 Mm.210188 XM_001478125 ENSMUSG00000038866 Zcchc2 9930114B20Rik|AW212015 zinc finger, CCHC domain containing 2 0.141026 0.732484 -8.788772 chr9-328 chr9 7837562 7837718 + 35.6 NA Intergenic CpG -1864 NM_007465 11797 Mm.335659 NM_007465 ENSMUSG00000057367 Birc2 AW146227|Api1|Api2|Birc3|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1 baculoviral IAP repeat-containing 2 0.134615 0.719745 -3.901809 chr1-509 chr1 79279496 79279652 + 35.6 NA Intergenic Intergenic 39540 NM_009129 20254 Mm.5038 NM_009129 ENSMUSG00000050711 Scg2 Chgc|SgII secretogranin II 0.012821 0.471338 -3.211576 chr7-235 chr7 16219350 16219506 + 35.6 NA intron (NM_001162950, intron 1 of 14) intron (NM_001162950, intron 1 of 14) 1521 NM_001162950 53417 Mm.135110 NM_001162950 ENSMUSG00000004328 Hif3a Ipas|MOP7|NEPAS|bHLHe17 hypoxia inducible factor 3, alpha subunit 0.044872 0.662420 -3.424119 chr13-231 chr13 58597769 58597925 + 35.6 NA exon (NM_022317, exon 2 of 18) exon (NM_022317, exon 2 of 18) 22653 NM_022317 114304 Mm.18188 NM_022317 ENSMUSG00000021553 Slc28a3 Cnt3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 0.025641 0.496815 -5.027506 chr1-511 chr1 80975008 80975164 + 35.6 NA intron (NM_172849, intron 2 of 4) intron (NM_172849, intron 2 of 4) 18746 NM_172849 241134 Mm.313904 NM_172849 ENSMUSG00000054976 9430031J16Rik Jr6|Kiaa1486|MGC90544 RIKEN cDNA 9430031J16 gene 0.006410 0.414013 3.227748 chr1-556 chr1 164346114 164346270 + 35.6 NA Intergenic Intergenic -31483 NM_172646 103967 Mm.441620 NM_001038619 ENSMUSG00000040265 Dnm3 9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820 dynamin 3 0.012821 0.528662 -6.199862 chr9-406 chr9 115702288 115702444 + 35.6 NA Intergenic Intergenic -55786 NM_028638 73748 Mm.29221 XM_135211 ENSMUSG00000056880 Gadl1 1110027M19Rik glutamate decarboxylase-like 1 0.000000 0.445860 0.394726 chr16-217 chr16 91652238 91652394 + 35.6 NA intron (NM_001110276, intron 1 of 15) intron (NM_001110276, intron 1 of 15) 34087 NM_010587 16443 Mm.40546 NM_001110275 ENSMUSG00000022957 Itsn1 AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17 intersectin 1 (SH3 domain protein 1A) 0.000000 0.363057 -1.002283 chr10-302 chr10 93896281 93896437 + 35.6 NA Intergenic Intergenic -48296 NM_172051 319880 Mm.23047 NM_001168684 ENSMUSG00000020023 Tmcc3 AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 transmembrane and coiled coil domains 3 0.032051 0.515924 -0.381651 chr10-283 chr10 70737377 70737533 + 35.6 NA intron (NM_134007, intron 1 of 2) intron (NM_134007, intron 1 of 2) 2694 NM_134007 52637 Mm.254114 NM_134007 ENSMUSG00000037710 Cisd1 AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET CDGSH iron sulfur domain 1 0.012821 0.490446 -1.620129 chr7-248 chr7 73491653 73491809 + 35.6 NA Intergenic CpG 68345 NR_033604 244061 NR_033604 Gm4971 EG244061 predicted gene 4971 0.102564 0.745223 -9.398853 chr5-447 chr5 33538391 33538547 + 35.6 NA Intergenic (GGGAGA)n|Simple_repeat|Simple_repeat -3374 NM_133903 100689 Mm.34694 NM_133903 ENSMUSG00000037379 Spon2 2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin spondin 2, extracellular matrix protein 0.012821 0.560510 5.624663 chr3-288 chr3 52710622 52710778 + 35.6 NA Intergenic Intergenic 354435 NM_019739 56458 Mm.29891 NM_019739 ENSMUSG00000044167 Foxo1 AI876417|Afxh|FKHR|Fkhr1|Foxo1a forkhead box O1 0.019231 0.547771 -5.107092 chr11-392 chr11 62355355 62355511 + 35.6 NA promoter-TSS (NM_028448) promoter-TSS (NM_028448) 23 NM_028448 73139 Mm.390409 XM_203393 ENSMUSG00000018509 Cenpv 3110013H01Rik|AA671303|Prr6 centromere protein V 0.153846 0.783440 1.041094 chr8-307 chr8 123378677 123378833 + 35.6 NA intron (NM_198671, intron 1 of 15) intron (NM_198671, intron 1 of 15) 3913 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.019231 0.592357 -5.308380 chr4-441 chr4 150024250 150024406 + 35.6 NA intron (NM_001166021, intron 5 of 22) intron (NM_001166021, intron 5 of 22) -122575 NM_009498 22319 Mm.273930 NM_009498 ENSMUSG00000028955 Vamp3 D130027G05Rik|VAMP-3|ceb vesicle-associated membrane protein 3 0.012821 0.458599 -4.875305 chr3-329 chr3 118587641 118587797 + 35.6 NA intron (NM_170778, intron 1 of 22) intron (NM_170778, intron 1 of 22) 33538 NM_170778 99586 Mm.27907 NM_170778 ENSMUSG00000033308 Dpyd AI315208|DPD|E330028L06Rik|MGC37940 dihydropyrimidine dehydrogenase 0.006410 0.401274 -2.556221 chr10-263 chr10 21491217 21491373 + 35.6 NA Intergenic Intergenic -80304 NM_001161845 20393 Mm.28405 NM_001161845 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 0.006410 0.452229 1.936201 chr2-352 chr2 19472158 19472314 + 35.6 NA promoter-TSS (NM_027600) promoter-TSS (NM_027600) -572 NM_027600 70909 Mm.158488 NM_027600 ENSMUSG00000026734 4921504E06Rik 4921522E24Rik RIKEN cDNA 4921504E06 gene 0.006410 0.477707 -8.257859 chr9-387 chr9 83766053 83766209 + 35.6 NA intron (NM_199195, intron 3 of 10) intron (NM_199195, intron 3 of 10) 20633 NM_199195 12040 Mm.12819 NM_199195 ENSMUSG00000032263 Bckdhb - branched chain ketoacid dehydrogenase E1, beta polypeptide 0.019231 0.414013 -7.770545 chr2-377 chr2 62465962 62466118 + 35.6 NA intron (NM_145523, intron 1 of 7) intron (NM_145523, intron 1 of 7) 875 NM_145523 227960 Mm.219877 NM_145523 ENSMUSG00000026893 Gca 5133401E04Rik|AI573844 grancalcin 0.000000 0.356688 -4.606389 chr4-446 chr4 153987726 153987882 + 35.6 NA intron (NM_001081100, intron 13 of 13) intron (NM_001081100, intron 13 of 13) 57428 NM_001081100 76866 Mm.200590 NM_001081100 ENSMUSG00000029049 Morn1 2900057D20Rik|4930417P05Rik|AU042805 MORN repeat containing 1 0.032051 0.662420 -3.650320 chr9-333 chr9 21542098 21542254 + 35.6 NA intron (NM_145611, intron 3 of 11) intron (NM_145611, intron 3 of 11) 6772 NM_145611 235041 Mm.257371 NM_145611 ENSMUSG00000032194 Kank2 AI504612|Ankrd25|BC010245|MGC12143|MGC7734 KN motif and ankyrin repeat domains 2 0.012821 0.458599 -5.387135 chr18-199 chr18 74122184 74122340 + 35.6 NA intron (NM_172632, intron 1 of 5) intron (NM_172632, intron 1 of 5) 68056 NM_172632 225724 Mm.254517 NM_172632 ENSMUSG00000024558 Mapk4 A330097D03Rik|Erk3|Prkm4|p63Mapk mitogen-activated protein kinase 4 0.006410 0.503185 -3.978670 chr10-314 chr10 117451607 117451763 + 35.6 NA Intergenic Intergenic -93094 NM_001162904 17245 Mm.442618 NM_001162904 ENSMUSG00000020212 Mdm1 Arrd2|Mdm-1 transformed mouse 3T3 cell double minute 1 0.006410 0.471338 -2.294811 chr5-539 chr5 142185840 142185996 + 35.6 NA intron (NM_177879, intron 5 of 44) intron (NM_177879, intron 5 of 44) -468052 NM_199068 17425 Mm.24214 NM_199068 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf forkhead box K1 0.032051 0.515924 -3.649139 chr1-531 chr1 131390489 131390645 + 35.6 NA intron (NM_172485, intron 2 of 27) intron (NM_172485, intron 2 of 27) 289718 NM_172485 210417 Mm.478578 NM_172485 ENSMUSG00000042581 Thsd7b 1700074E13Rik|B930082A18|D130067I03Rik thrombospondin, type I, domain containing 7B 0.000000 0.426752 -1.771401 chr12-368 chr12 102945391 102945547 + 35.6 NA Intergenic Intergenic -10549 NM_007693 12652 Mm.4137 NM_007693 ENSMUSG00000021194 Chga - chromogranin A 0.012821 0.477707 -4.848375 chr12-309 chr12 44633770 44633926 + 35.6 NA Intergenic Intergenic 446506 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ (Hsp40) homolog, subfamily B, member 9 0.006410 0.445860 -1.317961 chr3-290 chr3 54335998 54336154 + 35.6 NA intron (NM_016984, intron 3 of 10) intron (NM_016984, intron 3 of 10) 92044 NM_016984 22066 Mm.10100 NM_016984 ENSMUSG00000027748 Trpc4 CCE1|STRPC4|Trp4|Trrp4 transient receptor potential cation channel, subfamily C, member 4 0.006410 0.369427 -6.731860 chr1-487 chr1 62109745 62109901 + 35.6 NA intron (NM_001081050, intron 10 of 22) intron (NM_001081050, intron 10 of 22) -527769 NM_001077406 18187 Mm.266341 NM_001077403 ENSMUSG00000025969 Nrp2 1110048P06Rik|Np-2|Np2|Npn-2|Npn2 neuropilin 2 0.006410 0.394904 -7.199300 chr11-459 chr11 117998930 117999086 + 35.6 NA intron (NM_001112699, intron 7 of 12) intron (NM_001112699, intron 7 of 12) 29824 NM_001112700 19157 Mm.86413 NM_001112699 ENSMUSG00000017132 Cyth1 CLM1|CTH-1|CYTIP|KIAA4240|Pscd1|mKIAA4240 cytohesin 1 0.006410 0.522293 -4.366058 chr2-386 chr2 69602797 69602953 + 35.6 NA Intergenic Intergenic 12300 NM_028521 73373 Mm.9621 NM_028521 ENSMUSG00000027088 Phospho2 1700048E23Rik|AI661517|AU021728|AV006103|Phos2 phosphatase, orphan 2 0.000000 0.464968 -5.211795 chr4-429 chr4 137868704 137868860 + 35.6 NA intron (NM_029401, intron 8 of 21) intron (NM_029401, intron 8 of 21) 27286 NM_029401 75718 Mm.251530 XM_144060 ENSMUSG00000028753 Vwa5b1 4931403E03Rik von Willebrand factor A domain containing 5B1 0.000000 0.452229 4.343182 chr13-263 chr13 118128250 118128406 + 35.6 NA intron (NM_001081009, intron 3 of 26) intron (NM_001081009, intron 3 of 26) 16469 NM_001081009 52552 Mm.274466 NM_001081009 ENSMUSG00000021725 Parp8 2810430O08Rik|D13Ertd275e poly (ADP-ribose) polymerase family, member 8 0.000000 0.509554 -2.684437 chr2-343 chr2 4985241 4985397 + 35.6 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -4109 NM_181848 71648 Mm.116942 NM_181848 ENSMUSG00000026672 Optn 4930441O07Rik|FIP2|HYPL|NRP optineurin 0.006410 0.509554 0.780400 chr8-261 chr8 37664241 37664397 + 35.6 NA Intergenic Intergenic 53714 NM_001081150 244421 Mm.324032 NM_001081150 ENSMUSG00000039633 Lonrf1 - LON peptidase N-terminal domain and ring finger 1 0.019231 0.426752 -7.091614 chr10-308 chr10 97437280 97437436 + 35.6 NA Intergenic Intergenic -40580 NR_033537 100038699 Mm.467933 NR_033537 Gm10754 ENSMUSG00000074776 predicted gene 10754 0.019231 0.337580 -1.405349 chr2-447 chr2 169900386 169900542 + 35.6 NA Intergenic Intergenic -66584 NM_001159683 228913 Mm.478627 NM_001033299 ENSMUSG00000052056 Zfp217 4933431C08Rik|AW987152|Gm562|ZABC1|Znf217 zinc finger protein 217 0.025641 0.566879 -3.377869 chr5-523 chr5 135331529 135331685 + 35.6 NA intron (NM_016801, intron 8 of 9) intron (NM_016801, intron 8 of 9) 17130 NM_025375 66138 Mm.439878 NM_025375 ENSMUSG00000005378 Wbscr22 1110003N24Rik|MGC144442|MGC144443 Williams Beuren syndrome chromosome region 22 0.006410 0.363057 -6.298096 chr6-243 chr6 31436821 31436977 + 35.6 NA intron (NM_013791, intron 17 of 17) intron (NM_013791, intron 17 of 17) 57201 NM_013723 27205 Mm.89918 NM_013723 ENSMUSG00000025608 Podxl AW121214|Ly102|PC|PCLP-1|Pclp1 podocalyxin-like 0.000000 0.324841 -2.344951 chr6-256 chr6 47760083 47760239 + 35.6 NA promoter-TSS (NM_177882) promoter-TSS (NM_177882) -70 NM_177882 330301 Mm.128149 NM_177882 ENSMUSG00000051499 Zfp786 A730012O14Rik|Znf786 zinc finger protein 786 0.102564 0.726115 -3.522552 chr6-294 chr6 100754769 100754925 + 35.6 NA intron (NM_198612, intron 5 of 6) intron (NM_198612, intron 5 of 6) -44888 NM_182939 232314 Mm.480664 NM_182939 ENSMUSG00000052144 Ppp4r2 BE691708|C230060M08Rik protein phosphatase 4, regulatory subunit 2 0.012821 0.452229 7.112517 chr10-319 chr10 125934952 125935108 + 35.6 NA Intergenic Intergenic 369290 NM_026858 68876 Mm.276769 NM_001159559 ENSMUSG00000025436 Xrcc6bp1 1110068E08Rik|2410012H02Rik XRCC6 binding protein 1 0.006410 0.439490 -1.793618 chr13-215 chr13 38373616 38373772 + 35.6 NA intron (NM_007556, intron 1 of 6) intron (NM_007556, intron 1 of 6) 20513 NM_007556 12161 Mm.385759 NM_007556 ENSMUSG00000039004 Bmp6 D13Wsu115e|Vgr1 bone morphogenetic protein 6 0.006410 0.484076 -3.335130 chr10-275 chr10 60971666 60971822 + 35.6 NA intron (NM_153542, intron 4 of 4) intron (NM_153542, intron 4 of 4) -19096 NM_001177511 237362 Mm.131297 XM_137119 Npffr1 Gm236|Gpr147|NPFF1|OT7T022 neuropeptide FF receptor 1 0.006410 0.477707 -3.677011 chr18-190 chr18 56160605 56160761 + 35.6 NA Intergenic Intergenic -396817 NM_026240 107022 Mm.24356 NM_026240 ENSMUSG00000001700 Gramd3 9030613F08Rik|9130427A09Rik|AW061306|NS3TP2 GRAM domain containing 3 0.012821 0.388535 7.818662 chr8-315 chr8 127936041 127936197 + 35.6 NA Intergenic Intergenic -4165 NM_174853 244667 Mm.233504 NM_174853 ENSMUSG00000043051 Disc1 - disrupted in schizophrenia 1 0.019231 0.515924 -3.074825 chr17-246 chr17 38100743 38100899 + 35.6 NA Intergenic Intergenic -61423 NM_001177585 100126773 Mm.471587 NM_001177585 Esp34 - exocrine gland-secreting peptide 34 0.000000 0.375796 -0.971677 chr7-268 chr7 102263081 102263237 + 35.6 NA intron (NM_009287, intron 3 of 11) intron (NM_009287, intron 3 of 11) -52356 NM_009103 20133 Mm.197486 NM_009103 ENSMUSG00000030978 Rrm1 RnrM1 ribonucleotide reductase M1 0.012821 0.433121 1.887916 chr13-254 chr13 105156892 105157048 + 35.6 NA intron (NM_029447, intron 11 of 12) intron (NM_029447, intron 11 of 12) 73026 NM_029447 75805 Mm.127692 NM_029447 ENSMUSG00000021710 Nln 4930472G13Rik|C79345 neurolysin (metallopeptidase M3 family) 0.012821 0.566879 2.643679 chr9-381 chr9 71071898 71072054 + 35.6 NA intron (NM_009022, intron 7 of 13) intron (NM_009022, intron 7 of 13) 57628 NM_009022 19378 Mm.42016 NM_009022 ENSMUSG00000013584 Aldh1a2 AV116159|Aldh1a7|Raldh1|Raldh2 aldehyde dehydrogenase family 1, subfamily A2 0.012821 0.388535 -1.065579 chr7-252 chr7 79762703 79762859 + 35.6 NA intron (NM_009682, intron 4 of 5) intron (NM_009682, intron 4 of 5) 31372 NM_009682 11778 Mm.220173 NM_009682 ENSMUSG00000063801 Ap3s2 [s]3B adaptor-related protein complex 3, sigma 2 subunit 0.032051 0.382166 1.904647 chr4-416 chr4 119037378 119037534 + 35.6 NA promoter-TSS (NM_172699) promoter-TSS (NM_172699) -163 NM_172699 230700 Mm.259227 NM_172699 ENSMUSG00000032998 Foxj3 C330039G02Rik|DKFZp761E2211|Fhd6|mKIAA1041 forkhead box J3 0.134615 0.726115 9.390260 chr9-353 chr9 47302175 47302331 + 35.6 NA intron (NM_001025600, intron 1 of 8) intron (NM_001025600, intron 1 of 8) 20907 NM_018770 54725 Mm.234832 NM_001025600 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 cell adhesion molecule 1 0.000000 0.343949 8.301179 chr16-184 chr16 18057901 18058057 + 35.6 NA intron (NM_022982, intron 1 of 1) intron (NM_022982, intron 1 of 1) 16711 NM_022982 65079 Mm.40149 NM_022982 ENSMUSG00000043811 Rtn4r NOGOR|NgR reticulon 4 receptor 0.038462 0.566879 -1.722399 chr4-348 chr4 11855511 11855667 + 35.6 NA Intergenic 7SK|RNA|RNA 37271 NM_001098231 381511 Mm.331489 NM_001033453 ENSMUSG00000049225 Pdp1 Gm1024|Ppm2c pyruvate dehyrogenase phosphatase catalytic subunit 1 0.000000 0.458599 -4.745104 chr3-304 chr3 88578925 88579081 + 35.6 NA intron (NM_001002011, intron 1 of 11) intron (NM_001002011, intron 1 of 11) 223 NM_019390 16905 Mm.471227 NM_001002011 ENSMUSG00000028063 Lmna Dhe lamin A 0.057692 0.675159 -5.091317 chr9-346 chr9 44027599 44027755 + 35.6 NA intron (NM_138955, intron 12 of 14) intron (NM_138955, intron 12 of 14) -8083 NM_001163742 270151 Mm.3957 NM_001163742 ENSMUSG00000032109 Nlrx1 BC034204|NOD9 NLR family member X1 0.012821 0.464968 1.729805 chr17-277 chr17 78012574 78012730 + 35.6 NA Intergenic Intergenic -92653 NM_015800 50766 Mm.311912 NM_015800 ENSMUSG00000024074 Crim1 AU015004 cysteine rich transmembrane BMP regulator 1 (chordin like) 0.006410 0.401274 -5.588234 chr8-291 chr8 109803638 109803794 + 35.6 NA intron (NM_011574, intron 12 of 16) intron (NM_011574, intron 12 of 16) 20948 NM_011574 21771 Mm.10665 NM_011574 ENSMUSG00000041438 Cirh1a Cirhin|Naic|Teg-292|Tex292 cirrhosis, autosomal recessive 1A (human) 0.012821 0.414013 1.545275 chr11-363 chr11 4821299 4821455 + 35.6 NA intron (NM_172438, intron 15 of 19) intron (NM_172438, intron 15 of 19) 26032 NM_172438 107829 Mm.446885 NM_172438 ENSMUSG00000034274 Thoc5 1700060C24Rik|A430085L24Rik|Fmip|MGC49541|PK1.3|Sgk2 THO complex 5 0.006410 0.554140 -4.011017 chr17-219 chr17 5052355 5052511 + 35.6 NA intron (NM_001085355, intron 2 of 19) intron (NM_001085355, intron 2 of 19) 100878 NM_001085355 239985 Mm.133401 XM_001474848 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235 AT rich interactive domain 1B (SWI-like) 0.032051 0.452229 -1.674979 chr10-262 chr10 21133874 21134030 + 35.6 NA Intergenic Intergenic 67237 NM_178713 237320 Mm.90181 NM_178713 ENSMUSG00000037542 Aldh8a1 Raldh4 aldehyde dehydrogenase 8 family, member A1 0.019231 0.509554 -3.748510 chr5-432 chr5 20021612 20021768 + 35.6 NA intron (NM_015823, intron 9 of 21) intron (NM_015823, intron 9 of 21) 372258 NM_172992 68770 Mm.86410 NM_172992 ENSMUSG00000039987 Phtf2 1110054G21Rik|9530062N20Rik|AI447096|C77923 putative homeodomain transcription factor 2 0.019231 0.420382 -1.505037 chr10-254 chr10 3126305 3126461 + 35.6 NA Intergenic Intergenic -7920 NM_172546 215748 Mm.37984 NM_172546 ENSMUSG00000015202 Cnksr3 6820402C05|BC024086|MGC37681|Magi1 Cnksr family member 3 0.006410 0.394904 4.383698 chr11-418 chr11 93247692 93247848 + 35.6 NA intron (NM_028296, intron 3 of 8) intron (NM_028296, intron 3 of 8) 332391 NM_028296 72605 Mm.342160 NM_028296 ENSMUSG00000056158 Car10 2700029L05Rik|BB085816|Ca10 carbonic anhydrase 10 0.012821 0.452229 -6.263968 chr18-172 chr18 24723238 24723394 + 35.6 NA 3' UTR (NM_139143, exon 10 of 10) 3' UTR (NM_139143, exon 10 of 10) 23511 NM_139143 106957 Mm.21688 NM_139143 ENSMUSG00000024270 Slc39a6 Ermelin solute carrier family 39 (metal ion transporter), member 6 0.019231 0.388535 -2.658140 chr11-376 chr11 36021918 36022074 + 35.6 NA intron (NM_011856, intron 7 of 28) intron (NM_011856, intron 7 of 28) -198484 NM_170779 211652 Mm.31267 NM_170779 ENSMUSG00000018849 Wwc1 AA408228|AU017197|BC037006|KIAA0869|Kibra|MGC47054|mKIAA0869 WW, C2 and coiled-coil domain containing 1 0.006410 0.535032 0.828838 chr2-365 chr2 34113270 34113426 + 35.6 NA intron (NM_016768, intron 2 of 8) intron (NM_016768, intron 2 of 8) 80697 NM_016768 18516 Mm.239941 NM_016768 ENSMUSG00000038718 Pbx3 - pre B-cell leukemia transcription factor 3 0.000000 0.375796 2.368940 chr4-363 chr4 46544364 46544520 + 35.6 NA intron (NM_029077, intron 3 of 5) intron (NM_029077, intron 3 of 5) 12802 NM_029077 74735 Mm.240252 NM_029077 ENSMUSG00000039853 Trim14 5830400N10Rik|pub tripartite motif-containing 14 0.006410 0.452229 -0.095615 chr16-190 chr16 25412976 25413132 + 35.6 NA Intergenic L1M4|LINE|L1 -186059 NM_001127261 22061 Mm.20894 NM_001127259 ENSMUSG00000022510 Trp63 AI462811|Ket|MGC115972|P51/P63|P63|P73l|Tp63|Trp53rp1 transformation related protein 63 0.000000 0.363057 -2.182404 chr7-298 chr7 144044781 144044937 + 35.6 NA intron (NM_001113373, intron 4 of 15) intron (NM_001113373, intron 4 of 15) -48915 NM_001081370 210274 Mm.323725 NM_001081370 ENSMUSG00000037541 Shank2 KIAA1022|mKIAA1022 SH3/ankyrin domain gene 2 0.006410 0.426752 -5.780963 chr18-185 chr18 54282075 54282231 + 35.6 NA Intergenic MMERGLN-int|LTR|ERV1 294672 NM_152809 70425 Mm.368668 NM_152809 ENSMUSG00000073563 Csnk1g3 3300002K07Rik|C330049O21Rik casein kinase 1, gamma 3 0.006410 0.458599 -3.122461 chr13-258 chr13 111265658 111265814 + 35.6 NA intron (NM_023852, intron 3 of 4) intron (NM_023852, intron 3 of 4) 135348 NM_023852 67295 Mm.151600 NM_023852 ENSMUSG00000021700 Rab3c 2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886|MGC124069 RAB3C, member RAS oncogene family 0.006410 0.388535 -4.212750 chr12-386 chr12 118301673 118301829 + 35.6 NA intron (NM_146040, intron 1 of 9) intron (NM_146040, intron 1 of 9) 15882 NM_146040 217946 Mm.281149 NM_146040 ENSMUSG00000021175 Cdca7l BC006933|JPO2|MGC11998 cell division cycle associated 7 like 0.006410 0.471338 -5.942590 chr3-271 chr3 20435039 20435195 + 35.6 NA promoter-TSS (NM_007753) promoter-TSS (NM_007753) -886 NM_007753 12873 Mm.1135 NM_007753 ENSMUSG00000001865 Cpa3 MC-CPA|mMC-CPA carboxypeptidase A3, mast cell 0.006410 0.401274 -5.702188 chr8-275 chr8 72199847 72200003 + 35.6 NA promoter-TSS (NM_172491) promoter-TSS (NM_172491) -143 NM_172491 211135 Mm.294970 NM_172491 ENSMUSG00000079038 D130040H23Rik - RIKEN cDNA D130040H23 gene 0.019231 0.515924 4.408719 chr3-351 chr3 154130730 154130886 + 35.6 NA intron (NM_001081263, intron 2 of 21) intron (NM_001081263, intron 2 of 21) 135045 NM_010713 16875 Mm.15530 NM_010713 ENSMUSG00000028201 Lhx8 L3|Lhx7 LIM homeobox protein 8 0.012821 0.503185 -3.949152 chr11-462 chr11 119663707 119663863 + 35.6 NA intron (NM_028898, intron 16 of 33) intron (NM_028898, intron 16 of 33) -66114 NM_001085498 208092 Mm.306673 XM_126613 ENSMUSG00000025371 Chmp6 2400004G01Rik chromatin modifying protein 6 0.006410 0.445860 -5.432669 chr4-404 chr4 105751260 105751416 + 35.6 NA Intergenic MTEb|LTR|MaLR -62806 NM_183225 329908 Mm.234544 XM_001473472 ENSMUSG00000028514 Usp24 2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851 ubiquitin specific peptidase 24 0.006410 0.464968 -1.434065 chr5-467 chr5 76325737 76325893 + 35.6 NA Intergenic Intergenic -65690 NM_010612 16542 Mm.285 NM_010612 ENSMUSG00000062960 Kdr 6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2 kinase insert domain protein receptor 0.038462 0.554140 0.333490 chr17-255 chr17 42380448 42380604 + 35.6 NA Intergenic Intergenic -40618 NM_009847 12488 Mm.218637 NM_009847 ENSMUSG00000061665 Cd2ap AL024079|C78928|METS-1|Mets1 CD2-associated protein 0.025641 0.477707 -7.613114 chr6-260 chr6 54029254 54029410 + 35.6 NA intron (NM_001163640, intron 1 of 12) intron (NM_001163640, intron 1 of 12) 59823 NM_001163640 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.019231 0.452229 -1.700911 chr1-542 chr1 138712416 138712572 + 35.6 NA intron (NM_030676, intron 6 of 8) intron (NM_030676, intron 6 of 8) 57547 NM_001159769 26424 Mm.16794 NM_001159769 ENSMUSG00000026398 Nr5a2 AU020803|D1Ertd308e|Ftf|LRH-1 nuclear receptor subfamily 5, group A, member 2 0.038462 0.439490 1.147896 chr4-386 chr4 86567595 86567751 + 35.6 NA intron (NM_172426, intron 2 of 10) intron (NM_172426, intron 2 of 10) 131521 NM_001110240 76376 Mm.127296 NM_001110240 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 0.006410 0.509554 -2.466514 chr5-542 chr5 143142611 143142767 + 35.6 NA intron (NM_001033312, intron 4 of 4) intron (NM_001033312, intron 4 of 4) 17689 NM_001033312 231863 Mm.454456 NM_001033312 ENSMUSG00000066640 Fbxl18 AI427077|B130019G13Rik|C330021B20Rik F-box and leucine-rich repeat protein 18 0.025641 0.649682 -5.598690 chr18-193 chr18 61884107 61884263 + 35.6 NA intron (NM_178928, intron 1 of 18) intron (NM_178928, intron 1 of 18) 27846 NM_178928 106877 Mm.26632 NM_178928 ENSMUSG00000033032 Afap1l1 AI173486 actin filament associated protein 1-like 1 0.006410 0.573248 -8.476860 chr5-489 chr5 106776478 106776634 + 35.6 NA Intergenic MIR|SINE|MIR -78088 NM_001005477 104382 Mm.271593 NM_001005477 ENSMUSG00000034384 Barhl2 E130309B19Rik|MBH1|MGC90874 BarH-like 2 (Drosophila) 0.000000 0.439490 1.360953 chr9-401 chr9 110103922 110104078 + 35.6 NA intron (NM_001166273, intron 4 of 4) intron (NM_001166273, intron 4 of 4) 15042 NM_001166273 29873 Mm.38496 NM_001166273 ENSMUSG00000032482 Cspg5 AI604859|Caleb|Ngc chondroitin sulfate proteoglycan 5 0.019231 0.566879 -5.942590 chr6-277 chr6 88452412 88452568 + 35.6 NA intron (NM_019685, intron 8 of 10) intron (NM_019685, intron 8 of 10) 21427 NM_019685 56505 Mm.42195 NM_019685 ENSMUSG00000030079 Ruvbl1 2510009G06Rik|Pontin52|Tip49a RuvB-like protein 1 0.006410 0.509554 2.746919 chr12-350 chr12 87772796 87772885 + 35.6 NA exon (NM_145836, exon 1 of 1) exon (NM_145836, exon 1 of 1) 1077 NM_145836 238330 Mm.248358 NM_145836 ENSMUSG00000034168 6430527G18Rik Eap1 RIKEN cDNA 6430527G18 gene 0.123596 0.577778 -12.146885 chr13-206 chr13 28691920 28692076 + 35.6 NA Intergenic Intergenic 269149 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.006410 0.433121 2.065558 chr1-526 chr1 108587359 108587515 + 35.6 NA promoter-TSS (NM_027534) promoter-TSS (NM_027534) -148 NM_027534 70750 Mm.475435 NM_027534 ENSMUSG00000009905 Kdsr 6330410P18Rik|9430079B08Rik|Fvt1 3-ketodihydrosphingosine reductase 0.076923 0.592357 0.346532 chr2-398 chr2 85016136 85016292 + 35.6 NA Intergenic L2|LINE|L2 -18676 NM_001033346 241528 Mm.476412 NM_001033346 ENSMUSG00000075224 Lrrc55 A330097E02Rik|Gm351 leucine rich repeat containing 55 0.000000 0.407643 0.500623 chr2-367 chr2 37835784 37835940 + 35.6 NA intron (NM_146122, intron 9 of 21) intron (NM_146122, intron 9 of 21) 237605 NM_001163566 241324 Mm.392369 XM_140952 Crb2 5930402A21|BC043114 crumbs homolog 2 (Drosophila) 0.006410 0.452229 1.052619 chr12-308 chr12 44512199 44512355 + 35.6 NA Intergenic Intergenic 568077 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ (Hsp40) homolog, subfamily B, member 9 0.000000 0.292994 2.024076 chr13-228 chr13 55546173 55546329 + 35.6 NA promoter-TSS (NM_134059) promoter-TSS (NM_134059) 29 NM_134059 72935 Mm.205045 NM_134059 ENSMUSG00000021494 Ddx41 2900024F02Rik|AA958953|ABS|AI324246 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 0.108974 0.592357 -5.152815 chr3-291 chr3 60411623 60411779 + 35.6 NA Intergenic Intergenic -177479 NM_020007 56758 Mm.255723 XM_001474780 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 muscleblind-like 1 (Drosophila) 0.000000 0.369427 -6.865913 chr12-321 chr12 59958676 59958832 + 35.6 NA Intergenic Intergenic 20719 NM_030057 78232 Mm.290070 NM_030057 ENSMUSG00000020993 Trappc6b 5830498C14Rik|C79212 trafficking protein particle complex 6B 0.006410 0.433121 -0.897998 chr11-461 chr11 119375621 119375777 + 35.6 NA Intergenic Intergenic -11789 NM_008730 18164 Mm.5142 NM_008730 ENSMUSG00000025582 Nptx1 D11Bwg1004e|Np1 neuronal pentraxin 1 0.000000 0.554140 -2.490685 chr11-407 chr11 81612512 81612668 + 35.6 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) 172001 NM_001034013 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.006410 0.522293 1.731097 chr3-309 chr3 95779399 95779555 + 35.6 NA Intergenic Intergenic -6214 NM_144899 229595 Mm.480058 NM_144899 ENSMUSG00000015850 Adamtsl4 MGC28749|Tsrc1 ADAMTS-like 4 0.012821 0.490446 -6.402682 chr16-216 chr16 91634923 91635079 + 35.6 NA intron (NM_001110276, intron 1 of 15) intron (NM_001110276, intron 1 of 15) 16772 NM_010587 16443 Mm.40546 NM_001110275 ENSMUSG00000022957 Itsn1 AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17 intersectin 1 (SH3 domain protein 1A) 0.006410 0.477707 -3.170388 chr7-254 chr7 83112005 83112161 + 35.6 NA Intergenic Intergenic -349032 NM_177695 233424 Mm.333991 NM_177695 ENSMUSG00000038540 Tmc3 9030203A06 transmembrane channel-like gene family 3 0.012821 0.471338 -0.784650 chr19-128 chr19 47708194 47708350 + 35.6 NA intron (NM_007732, intron 37 of 52) intron (NM_007732, intron 37 of 52) 37081 NM_007732 12821 Mm.478398 NM_007732 ENSMUSG00000025064 Col17a1 BP180|Bpag|Bpag2 collagen, type XVII, alpha 1 0.019231 0.554140 -4.820787 chr7-234 chr7 15910672 15910828 + 35.6 NA Intergenic Intergenic 13785 NM_198613 232910 Mm.333597 NM_198613 ENSMUSG00000008036 Ap2s1 AI043088|MGC62945 adaptor-related protein complex 2, sigma 1 subunit 0.044872 0.560510 0.110949 chr15-185 chr15 41713787 41713943 + 35.6 NA Intergenic MIR|SINE|MIR -14071 NM_175456 223513 Mm.148913 NM_175456 ENSMUSG00000042895 Abra C130068O12Rik|STARS actin-binding Rho activating protein 0.019231 0.426752 -1.105095 chr6-276 chr6 88256952 88257108 + 35.6 NA intron (NM_023060, intron 5 of 6) intron (NM_023060, intron 5 of 6) 69122 NM_019964 56691 Mm.272871 NM_019964 ENSMUSG00000048206 Dnajb8 1700016F14Rik|1700031F10Rik|AI326313|mDj6 DnaJ (Hsp40) homolog, subfamily B, member 8 0.012821 0.477707 -1.377122 chr1-498 chr1 72977026 72977182 + 35.6 NA Intergenic Intergenic -27998 NM_009407 21958 Mm.425024 NM_009407 ENSMUSG00000026182 Tnp1 Stp-1|TP1|Tp-1 transition protein 1 0.032051 0.496815 -2.967929 chr1-522 chr1 99826828 99826984 + 35.6 NA intron (NM_013626, intron 1 of 25) intron (NM_013626, intron 1 of 25) 99132 NM_013626 18484 Mm.441453 NM_013626 ENSMUSG00000026335 Pam PHM peptidylglycine alpha-amidating monooxygenase 0.006410 0.407643 -3.228869 chr4-440 chr4 149875152 149875308 + 35.6 NA intron (NM_011067, intron 7 of 20) intron (NM_011067, intron 7 of 20) 13192 NM_011067 18628 Mm.121361 NM_011067 ENSMUSG00000028957 Per3 2810049O06Rik|mPer3 period homolog 3 (Drosophila) 0.006410 0.363057 -2.534689 chr5-451 chr5 43341081 43341237 + 35.6 NA Intergenic MIRb|SINE|MIR -180551 NM_175937 231207 Mm.7233 NM_001177379 ENSMUSG00000039782 Cpeb2 A630055H10Rik cytoplasmic polyadenylation element binding protein 2 0.006410 0.452229 -5.455175 chr16-175 chr16 5074679 5074835 + 35.6 NA intron (NM_001127725, intron 2 of 15) intron (NM_001127725, intron 2 of 15) 12328 NM_001127725 665119 Mm.102072 XM_920267 Sec14l5 - SEC14-like 5 (S. cerevisiae) 0.025641 0.528662 3.930293 chr3-344 chr3 144474457 144474613 + 35.6 NA intron (NM_011828, intron 1 of 6) intron (NM_011828, intron 1 of 6) 33067 NM_011828 23908 Mm.465667 NM_011828 ENSMUSG00000040151 Hs2st1 AW214369|Hs2st|mKIAA0448 heparan sulfate 2-O-sulfotransferase 1 0.025641 0.484076 -1.221098 chr7-240 chr7 44136425 44136581 + 35.6 NA Intergenic Intergenic 18312 NR_028533 100217433 NR_028533 Snord88a MBII-211 small nucleolar RNA, C/D box 88A 0.038462 0.617834 -3.151331 chr18-205 chr18 80298739 80298895 + 35.6 NA intron (NM_175028, intron 3 of 3) intron (NM_175028, intron 3 of 3) 14724 NM_175028 240442 Mm.26594 XM_140497 ENSMUSG00000053950 Adnp2 8430420L05Rik|BC024969|Kiaa0863|MGC38953|Zfp508|mKIAA0863 ADNP homeobox 2 0.012821 0.414013 2.809973 chr17-233 chr17 26036621 26036777 + 35.6 NA Intergenic RNLTR23|LTR|ERVK 56190 NM_028190 66978 Mm.440216 NM_025881 ENSMUSG00000024188 Luc7l 1810045C04Rik|2410018D03Rik Luc7 homolog (S. cerevisiae)-like 0.000000 0.414013 1.202563 chr17-262 chr17 46881801 46881957 + 35.6 NA intron (NM_029296, intron 3 of 3) intron (NM_029296, intron 3 of 3) -3977 NM_001172091 75462 Mm.46129 NM_001172091 ENSMUSG00000047150 1700001C19Rik - RIKEN cDNA 1700001C19 gene 0.000000 0.560510 1.406633 chr2-452 chr2 180186708 180186743 + 35.6 NA promoter-TSS (NM_025587) promoter-TSS (NM_025587) -61 NM_025587 66481 Mm.289669 NM_025587 ENSMUSG00000039001 Rps21 1810049N11Rik|2410030A14Rik|MGC107620 ribosomal protein S21 0.028571 0.472222 -6.929636 chr12-301 chr12 36716733 36716889 + 35.6 NA Intergenic Lx7|LINE|L1 11657 NM_027699 71156 Mm.250837 NM_001177877 ENSMUSG00000020545 1700108M19Rik 4933421E18Rik|MGC130241|MGC130242 RIKEN cDNA 1700108M19 gene 0.006410 0.471338 -5.303322 chr11-361 chr11 4235537 4235693 + 35.6 NA Intergenic Intergenic 68518 NM_001039537 16878 Mm.4964 NM_001039537 ENSMUSG00000034394 Lif - leukemia inhibitory factor 0.012821 0.439490 -3.701042 chr4-351 chr4 13194955 13195111 + 35.6 NA Intergenic Intergenic 361050 NM_001171801 208820 Mm.12057 NM_001171801 Gm11818 C130086A10|OTTMUSG00000004461|triqk predicted gene 11818 0.012821 0.547771 -4.290056 chr1-461 chr1 9932938 9933094 + 35.6 NA Intergenic Intergenic -3684 NR_024067 73824 Mm.28311 NR_024067 Snhg6 1110008H02Rik small nucleolar RNA host gene (non-protein coding) 6 0.006410 0.420382 -1.671393 chr12-360 chr12 98505408 98505564 + 35.6 NA Intergenic Intergenic 154901 NM_008079 14420 Mm.5120 NM_008079 ENSMUSG00000021003 Galc 2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher galactosylceramidase 0.019231 0.464968 0.917813 chr2-379 chr2 64296650 64296806 + 35.6 NA Intergenic Intergenic -397882 NM_021716 60344 Mm.438921 NM_021716 ENSMUSG00000075324 Fign fi|fidget fidgetin 0.000000 0.356688 -6.863120 chr10-313 chr10 116915703 116915859 + 35.6 NA Intergenic L1M5|LINE|L1 -116710 NM_027468 70574 Mm.339332 XM_917914 ENSMUSG00000020183 Cpm 1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik|MGC118152 carboxypeptidase M 0.038462 0.433121 -2.015870 chr15-174 chr15 8843702 8843858 + 35.6 NA Intergenic Intergenic -71553 NM_198024 223332 Mm.418007 XM_001473207 Ranbp3l C130037N17Rik RAN binding protein 3-like 0.019231 0.490446 -10.017251 chr14-103 chr14 19015731 19015887 + 35.6 NA Intergenic Intergenic 41905 NM_029006 74571 Mm.105571 XM_138942 Kcnk16 4731413G05Rik|TALK-1|TALK1 potassium channel, subfamily K, member 16 0.006410 0.445860 -5.405082 chr4-387 chr4 87382827 87382983 + 35.6 NA intron (NM_027326, intron 2 of 10) intron (NM_027326, intron 2 of 10) -105360 NM_029931 70122 Mm.288898 NM_027326 ENSMUSG00000028496 Mllt3 2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 0.012821 0.426752 2.675469 chr11-398 chr11 75609461 75609617 + 35.6 NA intron (NM_007873, intron 1 of 8) intron (NM_007873, intron 1 of 8) 2713 NM_007873 13447 Mm.5137 NM_007873 ENSMUSG00000020848 Doc2b - double C2, beta 0.000000 0.490446 -4.113583 chr9-377 chr9 68568097 68568253 + 35.6 NA 5' UTR (NR_033299, exon 1 of 1) 5' UTR (NR_033299, exon 1 of 1) 3666 NR_033299 320440 NM_177159 9530091C08Rik - RIKEN cDNA 9530091C08 gene 0.000000 0.477707 9.313207 chr5-497 chr5 115820406 115820562 + 35.6 NA promoter-TSS (NM_007475) promoter-TSS (NM_007475) 19 NM_007475 11837 Mm.371545 NM_007475 ENSMUSG00000067274 Rplp0 36B4|Arbp|MGC107165|MGC107166 ribosomal protein, large, P0 0.089744 0.605096 -3.025107 chr4-358 chr4 35358586 35358742 + 35.6 NA Intergenic Intergenic -12311 NM_178061 214944 Mm.384425 NM_178061 ENSMUSG00000073910 Mobkl2b 8430436F23Rik|A430018A01Rik|MGC28259|Mob3b MOB1, Mps One Binder kinase activator-like 2B (yeast) 0.032051 0.541401 -0.610905 chr14-129 chr14 99797272 99797428 + 35.6 NA Intergenic Intergenic 285851 NM_029680 76627 Mm.31415 XM_001472418 ENSMUSG00000042888 1700110M21Rik - RIKEN cDNA 1700110M21 gene 0.000000 0.356688 -0.032836 chr1-486 chr1 61080863 61081019 + 35.6 NA Intergenic Intergenic 158482 NM_017480 54167 Mm.42044 NM_017480 ENSMUSG00000026009 Icos AILIM|H4|Ly115 inducible T-cell co-stimulator 0.012821 0.407643 5.233766 chr11-458 chr11 117694166 117694322 + 35.6 NA Intergenic Intergenic -4628 NM_027919 71776 Mm.3200 NM_027919 ENSMUSG00000017713 Tha1 1300017K07Rik|GLY1 threonine aldolase 1 0.000000 0.579618 0.523963 chr19-121 chr19 42249924 42250080 + 35.6 NA Intergenic Intergenic 5561 NM_018780 54612 Mm.470071 NM_018780 ENSMUSG00000018822 Sfrp5 AI605071|SARP3 secreted frizzled-related sequence protein 5 0.006410 0.541401 -1.877433 chr6-266 chr6 63687036 63687192 + 35.6 NA intron (NM_008167, intron 2 of 15) intron (NM_008167, intron 2 of 15) 500680 NM_008167 14804 Mm.447390 NM_008167 ENSMUSG00000071424 Grid2 B230104L07Rik|GluRdelta2|Lc|Lc|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr glutamate receptor, ionotropic, delta 2 0.006410 0.394904 3.723897 chr6-257 chr6 49026841 49026997 + 35.6 NA intron (NM_023670, intron 10 of 14) intron (NM_023670, intron 10 of 14) 23539 NM_029353 75593 Mm.439947 NM_029353 2410003K15Rik - RIKEN cDNA 2410003K15 gene 0.032051 0.503185 -7.527329 chr7-274 chr7 114846690 114846846 + 35.6 NA Intergenic Intergenic 309854 NM_173767 233752 Mm.83037 NM_173767 ENSMUSG00000048782 Insc 3830422K02Rik|C730020D23|MGC107593 inscuteable homolog (Drosophila) 0.000000 0.464968 -5.886438 chr1-491 chr1 69324716 69324872 + 35.6 NA Intergenic B3|SINE|B2 -283527 NM_010154 13869 Mm.442420 XM_001002143 ENSMUSG00000062209 Erbb4 Her4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 0.006410 0.433121 -4.386508 chr4-426 chr4 134574459 134574615 + 35.6 NA Intergenic Intergenic -29701 NM_013885 29876 Mm.473864 NM_013885 ENSMUSG00000037242 Clic4 D0Jmb3|TU-74|mc3s5|mtCLIC chloride intracellular channel 4 (mitochondrial) 0.019231 0.484076 -5.334875 chr8-249 chr8 9824478 9824634 + 35.6 NA Intergenic L1M4|LINE|L1 -53561 NM_173446 270028 Mm.268163 NM_173446 ENSMUSG00000079157 Fam155a 6430500D16|AW121567|Tmem28 family with sequence similarity 155, member A 0.012821 0.382166 -3.004094 chr3-317 chr3 100939725 100939881 + 35.6 NA Intergenic Intergenic -14716 NM_178594 242122 Mm.137467 NM_178594 ENSMUSG00000051076 Vtcn1 B7h4|B7s1|B7x|BC032925|MGC41287 V-set domain containing T cell activation inhibitor 1 0.006410 0.464968 -4.851965 chr19-115 chr19 28351278 28351434 + 35.6 NA intron (NM_175459, intron 8 of 10) intron (NM_175459, intron 8 of 10) -274193 NM_011265 19726 Mm.313321 NM_001166414 ENSMUSG00000040929 Rfx3 C230093O12Rik|MRFX3 regulatory factor X, 3 (influences HLA class II expression) 0.032051 0.458599 -0.692720 chr10-280 chr10 68880650 68880806 + 35.6 NA Intergenic Intergenic -48336 NM_170729 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G|MGC14049 ankyrin 3, epithelial 0.000000 0.445860 -2.084324 chr1-512 chr1 81783227 81783383 + 35.6 NA Intergenic Intergenic 387158 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.019231 0.452229 -6.222728 chr5-478 chr5 93563739 93563895 + 35.6 NA intron (NM_007644, intron 1 of 11) intron (NM_007644, intron 1 of 11) 16991 NM_007644 12492 Mm.297964 NM_007644 ENSMUSG00000029426 Scarb2 9330185J12Rik|Cd36l2|LGP85|LIMP-2|MLGP85 scavenger receptor class B, member 2 0.000000 0.477707 -3.156227 chr10-260 chr10 17466164 17466320 + 35.6 NA Intergenic Intergenic -19392 NM_138628 378431 Mm.283493 NM_138628 ENSMUSG00000039891 Txlnb 2310001N14Rik|Mdp77 taxilin beta 0.019231 0.420382 3.520880 chr9-359 chr9 49637101 49637257 + 35.6 NA Intergenic Intergenic -85880 NM_010875 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.025641 0.566879 -8.032885 chr17-280 chr17 80796274 80796430 + 35.6 NA Intergenic Intergenic -56605 NM_026516 68027 Mm.474997 NM_026516 ENSMUSG00000024245 Tmem178 2810417M05Rik transmembrane protein 178 0.019231 0.464968 -5.997655 chr8-295 chr8 114770375 114770531 + 35.6 NA Intergenic PB1D9|SINE|Alu -7105 NM_025781 66817 Mm.345350 NM_025781 ENSMUSG00000031953 Tmem170 9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a transmembrane protein 170 0.006410 0.464968 -6.573515 chr11-391 chr11 61806416 61806572 + 35.6 NA Intergenic MT2A|LTR|ERVL -60073 NM_019921 56697 Mm.274404 NM_019921 ENSMUSG00000047804 Akap10 1500031L16Rik|B130049N18Rik|D-AKAP2 A kinase (PRKA) anchor protein 10 0.012821 0.439490 -5.763183 chr6-305 chr6 117845236 117845392 + 35.6 NA Intergenic CpG 16619 NM_001001792 22685 Mm.249661 NM_001001792 ENSMUSG00000042097 Zfp239 Mok-2|Mok2|Znf239 zinc finger protein 239 0.102564 0.624204 -5.959633 chr12-344 chr12 86319728 86319884 + 35.6 NA Intergenic Intergenic -43197 NM_010234 14281 Mm.246513 NM_010234 ENSMUSG00000021250 Fos D12Rfj1|c-fos|cFos FBJ osteosarcoma oncogene 0.006410 0.503185 -8.947541 chr4-427 chr4 136320700 136320856 + 35.6 NA promoter-TSS (NM_198248) promoter-TSS (NM_198248) -7 NM_198248 230848 Mm.31068 NM_198248 ENSMUSG00000060862 Zbtb40 BC059177|C230087D24|Gm571|MGC62412|mKIAA0478 zinc finger and BTB domain containing 40 0.057692 0.528662 -2.681539 chr11-426 chr11 98201206 98201362 + 35.6 NA TTS (NM_011540) TTS (NM_011540) 1384 NM_011540 21393 Mm.10762 NM_011540 ENSMUSG00000007877 Tcap AI503981|AJ223855 titin-cap 0.012821 0.585987 -7.113022 chr7-260 chr7 96334350 96334506 + 35.6 NA intron (NM_011858, intron 3 of 32) intron (NM_011858, intron 3 of 32) 209813 NR_030489 735284 NR_030489 Mir708 Mirn708|mmu-mir-708 microRNA 708 0.019231 0.509554 -5.959633 chr3-303 chr3 85948836 85948992 + 35.6 NA Intergenic Intergenic 24531 NM_177130 320302 Mm.119926 NM_177130 ENSMUSG00000031286 Glt28d2 4732486J07Rik|Glt28d1l|MGC148218 glycosyltransferase 28 domain containing 2 0.000000 0.420382 -3.755270 chr16-185 chr16 18543607 18543763 + 35.6 NA promoter-TSS (NM_213614) promoter-TSS (NM_213614) -184 NM_213614 18951 Mm.20365 NM_213614 ENSMUSG00000072214 Sept5 Cdcrel-1|Cdcrel1|Pnutl1 septin 5 0.076923 0.668790 1.562426 chr4-415 chr4 116776531 116776687 + 35.6 NA intron (NM_025739, intron 8 of 14) intron (NM_025739, intron 8 of 14) 26689 NM_026837 68777 Mm.331805 NM_026837 ENSMUSG00000048772 Tmem53 1110038M16Rik|1500001P22Rik|1700012A05Rik transmembrane protein 53 0.032051 0.509554 -8.845355 chr4-349 chr4 12709546 12709702 + 35.6 NA Intergenic Intergenic -124359 NM_173746 208820 Mm.12057 NM_001171801 Gm11818 C130086A10|OTTMUSG00000004461|triqk predicted gene 11818 0.006410 0.547771 -3.833204 chr7-243 chr7 63609026 63609182 + 35.6 NA intron (NM_130880, intron 9 of 13) intron (NM_130880, intron 9 of 13) 208761 NM_021366 50794 Mm.240473 NM_021366 ENSMUSG00000052040 Klf13 0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 0.000000 0.535032 -0.028996 chr2-349 chr2 14226404 14226560 + 35.6 NA exon (NM_008625, exon 20 of 30) exon (NM_008625, exon 20 of 30) 47726 NR_030609 100124488 NR_030609 Mir511 Mirn511|mmu-mir-511 microRNA 511 0.006410 0.464968 -4.149694 chr7-253 chr7 81104058 81104214 + 35.6 NA intron (NM_008803, intron 1 of 21) intron (NM_008803, intron 1 of 21) 16820 NM_008803 18584 Mm.458069 NM_008803 ENSMUSG00000025584 Pde8a AI551852|Pde8 phosphodiesterase 8A 0.012821 0.356688 0.962161 chr6-281 chr6 92360181 92360337 + 35.6 NA intron (NM_001134461, intron 7 of 7) intron (NM_001134461, intron 7 of 7) 86637 NM_001134460 243548 Mm.248820 NM_001081146 ENSMUSG00000030020 Prickle2 6230400G14Rik|6720451F06Rik|mpk2 prickle homolog 2 (Drosophila) 0.012821 0.452229 4.086495 chr1-567 chr1 180919939 180920095 + 35.6 NA intron (NM_027188, intron 8 of 11) intron (NM_027188, intron 8 of 11) 434661 NM_027188 69726 Mm.222338 NM_027188 ENSMUSG00000055067 Smyd3 2410008A19Rik|Zmynd1 SET and MYND domain containing 3 0.019231 0.490446 -4.918830 chr10-307 chr10 95738797 95738953 + 35.6 NA Intergenic Intergenic -307813 NM_007569 12226 Mm.23811 NM_007569 ENSMUSG00000036478 Btg1 AI426953|AW546738 B-cell translocation gene 1, anti-proliferative 0.006410 0.471338 -6.910407 chr12-335 chr12 79780329 79780485 + 35.6 NA promoter-TSS (NM_026114) promoter-TSS (NM_026114) 71 NM_023721 73834 Mm.480583 NM_023721 ENSMUSG00000021114 Atp6v1d 1110004P10Rik|Atp6m|VATD|Vma8 ATPase, H+ transporting, lysosomal V1 subunit D 0.070513 0.617834 -5.865436 chr18-171 chr18 24244899 24245055 + 35.6 NA Intergenic Intergenic 19852 NM_172625 225280 Mm.258973 NM_172625 ENSMUSG00000047989 Ino80c D030070L09Rik INO80 complex subunit C 0.000000 0.554140 2.295746 chr6-321 chr6 137572487 137572643 + 35.6 NA intron (NM_007945, intron 1 of 21) intron (NM_007945, intron 1 of 21) 40751 NM_007945 13860 Mm.412332 NM_007945 ENSMUSG00000015766 Eps8 AW261790 epidermal growth factor receptor pathway substrate 8 0.019231 0.439490 -0.417126 chr5-431 chr5 19737727 19737883 + 35.6 NA intron (NM_015823, intron 4 of 21) intron (NM_015823, intron 4 of 21) 318464 NM_015823 50791 Mm.441283 XM_001000876 ENSMUSG00000040003 Magi2 Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.019231 0.535032 3.267203 chr16-191 chr16 25420264 25420420 + 35.6 NA Intergenic Intergenic -178771 NM_001127261 22061 Mm.20894 NM_001127259 ENSMUSG00000022510 Trp63 AI462811|Ket|MGC115972|P51/P63|P63|P73l|Tp63|Trp53rp1 transformation related protein 63 0.012821 0.452229 -2.294811 chr15-194 chr15 67774266 67774422 + 35.6 NA Intergenic MIRb|SINE|MIR 314181 NM_001145888 380993 Mm.309526 NM_001145888 ENSMUSG00000022335 Zfat Gm922|MGC56951|Zfat1|Zfp406 zinc finger and AT hook domain containing 0.000000 0.452229 -6.330933 chr7-281 chr7 121697636 121697792 + 35.6 NA intron (NM_011325, intron 4 of 12) intron (NM_011325, intron 4 of 12) 41456 NM_011325 20277 Mm.7709 NM_011325 ENSMUSG00000030873 Scnn1b - sodium channel, nonvoltage-gated 1 beta 0.000000 0.484076 3.497363 chr9-378 chr9 68681155 68681311 + 35.6 NA intron (NM_013646, intron 1 of 10) intron (NM_013646, intron 1 of 10) 116724 NR_033299 320440 NM_177159 9530091C08Rik - RIKEN cDNA 9530091C08 gene 0.025641 0.503185 -7.542567 chr6-295 chr6 100787651 100787807 + 35.6 NA Intergenic RSINE1|SINE|B4 -12006 NM_182939 232314 Mm.480664 NM_182939 ENSMUSG00000052144 Ppp4r2 BE691708|C230060M08Rik protein phosphatase 4, regulatory subunit 2 0.000000 0.484076 -4.496294 chr14-114 chr14 33660321 33660477 + 35.6 NA intron (NM_008166, intron 2 of 15) intron (NM_008166, intron 2 of 15) 11172 NM_008166 14803 Mm.477417 NM_008166 ENSMUSG00000041078 Grid1 GluRdelta1 glutamate receptor, ionotropic, delta 1 0.012821 0.598726 -3.575948 chr13-259 chr13 111543316 111543472 + 35.6 NA Intergenic Intergenic 27473 NM_152804 20620 Mm.380 NM_152804 ENSMUSG00000021701 Plk2 Snk polo-like kinase 2 (Drosophila) 0.019231 0.363057 -4.701768 chr12-287 chr12 25324049 25324205 + 35.6 NA Intergenic Intergenic 26795 NM_009104 20135 Mm.99 NM_009104 ENSMUSG00000020649 Rrm2 AA407299|MGC113712|R2 ribonucleotide reductase M2 0.012821 0.566879 1.278494 chr10-272 chr10 43350866 43351022 + 35.6 NA Intergenic Intergenic 69103 NR_033558 414125 Mm.244305 NR_033558 F830002L21Rik - RIKEN cDNA F830002L21 gene 0.012821 0.363057 -5.231337 chr7-237 chr7 25606152 25606308 + 35.6 NA promoter-TSS (NM_009999) promoter-TSS (NM_009999) -193 NM_009999 13088 Mm.218749 NM_009998 ENSMUSG00000030483 Cyp2b10 Cyp2b|Cyp2b20|p16 cytochrome P450, family 2, subfamily b, polypeptide 10 0.000000 0.490446 -0.090558 chr3-330 chr3 122084673 122084829 + 35.6 NA intron (NM_007378, intron 11 of 49) intron (NM_007378, intron 11 of 49) 48270 NM_007378 11304 Mm.3918 NM_007378 ENSMUSG00000028125 Abca4 AW050280|Abc10|Abcr|D430003I15Rik|RmP ATP-binding cassette, sub-family A (ABC1), member 4 0.000000 0.369427 -3.939049 chr3-279 chr3 31992600 31992756 + 35.6 NA Intergenic Intergenic -100902 NM_028231 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik|MGC57945 potassium large conductance calcium-activated channel, subfamily M, beta member 2 0.006410 0.433121 -5.398274 chr8-257 chr8 36885919 36886075 + 35.6 NA Intergenic Intergenic 41740 NM_177741 244416 Mm.247126 NM_177741 ENSMUSG00000046794 Ppp1r3b 6430576E21|AW821953|GL protein phosphatase 1, regulatory (inhibitor) subunit 3B 0.012821 0.522293 -2.034606 chr4-405 chr4 107288768 107288924 + 35.6 NA Intergenic L1M5|LINE|L1 -11344 NR_033496 16975 Mm.442134 NM_001080926 Lrp8 4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 0.006410 0.394904 -0.435200 chr2-432 chr2 146054644 146054800 + 35.6 NA intron (NM_001033348, intron 24 of 40) intron (NM_001033348, intron 24 of 40) 141285 NM_016889 53626 Mm.379070 NM_016889 ENSMUSG00000068154 Insm1 IA-1 insulinoma-associated 1 0.000000 0.414013 -7.831738 chr4-424 chr4 131700232 131700388 + 35.6 NA Intergenic MIRb|SINE|MIR -5788 NM_175306 100169 Mm.158361 NM_001161797 ENSMUSG00000066043 Phactr4 3110001B12Rik|AI527228|AW495572|C330013F19Rik|FLJ13171|KIAA4120|N28169|mKIAA4120 phosphatase and actin regulator 4 0.032051 0.509554 -4.375020 chr15-200 chr15 75644785 75644941 + 35.6 NA intron (NM_172121, intron 3 of 11) intron (NM_172121, intron 3 of 11) 24300 NM_172121 223642 Mm.209800 NM_172121 ENSMUSG00000075600 Zc3h3 BC049953|Kiaa0150|Smicl|Zc3hdc3 zinc finger CCCH type containing 3 0.006410 0.522293 -4.109679 chr16-196 chr16 32528733 32528889 + 35.6 NA intron (NM_011638, intron 1 of 18) intron (NM_011638, intron 1 of 18) 169 NM_011638 22042 Mm.28683 NM_011638 ENSMUSG00000022797 Tfrc 2610028K12Rik|AI195355|AI426448|AU015758|CD71|E430033M20Rik|Mtvr-1|Mtvr1|TFR|TFR1|TR|Trfr|p90 transferrin receptor 0.115385 0.719745 -2.039449 chr12-298 chr12 33887408 33887564 + 35.6 NA promoter-TSS (NM_001033436) promoter-TSS (NM_001033436) -275 NM_001033436 380753 Mm.41540 NM_001033436 ENSMUSG00000020564 Atxn7l1 2810423G08Rik|Atxn7l4|MGC28883 ataxin 7-like 1 0.025641 0.503185 1.789457 chr18-204 chr18 79432892 79433048 + 35.6 NA Intergenic Intergenic -161500 NM_053099 240427 Mm.312871 NM_053099 ENSMUSG00000024548 Setbp1 C130092E12|MGC90748|Seb|mKIAA0437 SET binding protein 1 0.006410 0.439490 -4.673553 chr16-211 chr16 80816236 80816392 + 35.6 NA Intergenic Intergenic -266974 NM_001113208 17968 Mm.433941 NM_001113208 ENSMUSG00000022762 Ncam2 Ncam-2|Ocam|RNCAM neural cell adhesion molecule 2 0.012821 0.375796 -1.766447 chr10-292 chr10 80585984 80586140 + 35.6 NA promoter-TSS (NM_001190474) promoter-TSS (NM_001190474) -73 NM_001190474 13144 Mm.10294 NM_001190473 ENSMUSG00000034974 Dapk3 ZIPK|dlk death-associated protein kinase 3 0.076923 0.541401 -5.101700 chr13-236 chr13 70906340 70906496 + 35.6 NA Intergenic Intergenic 198588 NM_144837 218333 Mm.139738 XM_358313 BC018507 C77245|MGC27742|mKIAA0947 cDNA sequence BC018507 0.006410 0.458599 -1.282737 chr5-472 chr5 84753040 84753196 + 35.6 NA Intergenic Intergenic -323362 NM_153801 243078 Mm.126783 NM_153801 ENSMUSG00000049537 Tecrl D330017N19Rik|MGC130344|MGC130345|Srd5a2l2 trans-2,3-enoyl-CoA reductase-like 0.012821 0.464968 0.573818 chr4-357 chr4 34980764 34980920 + 35.6 NA Intergenic Intergenic -13618 NM_025471 66291 Mm.28071 NM_025471 ENSMUSG00000028295 1810030N24Rik 2810406B13Rik RIKEN cDNA 1810030N24 gene 0.006410 0.394904 -5.946749 chr2-388 chr2 71447582 71447738 + 35.6 NA Intergenic Intergenic -72595 NM_201366 381371 Mm.330284 NM_201366 ENSMUSG00000064263 Gm1631 - predicted gene 1631 0.000000 0.452229 2.542616 chr12-315 chr12 49589809 49589965 + 35.6 NA Intergenic Intergenic -669122 NM_001160112 15228 Mm.478474 NM_001160112 ENSMUSG00000020950 Foxg1 2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1 forkhead box G1 0.000000 0.433121 1.172648 chr9-400 chr9 108961633 108961789 + 35.6 NA exon (NM_172775, exon 10 of 38) exon (NM_172775, exon 10 of 38) 8870 NM_172775 235611 Mm.53862 NM_172775 ENSMUSG00000053646 Plxnb1 2900002G15Rik|AU042020|mKIAA0407 plexin B1 0.025641 0.624204 -3.565742 chr18-186 chr18 54739101 54739257 + 35.6 NA Intergenic Intergenic 376370 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.019231 0.503185 -7.992573 chr9-336 chr9 30540912 30541068 + 35.6 NA Intergenic MIRb|SINE|MIR 131027 NM_001024139 235130 Mm.65867 NM_001024139 ENSMUSG00000033453 Adamts15 - a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15 0.000000 0.363057 0.162160 chr11-444 chr11 112649724 112649880 + 35.6 NA Intergenic Intergenic 51503 NM_011448 20682 Mm.481669 NM_011448 ENSMUSG00000000567 Sox9 2010306G03Rik|AV220920|KIAA4243|mKIAA4243 SRY-box containing gene 9 0.012821 0.592357 -2.205744 chr6-246 chr6 33763165 33763321 + 35.6 NA intron (NM_009148, intron 12 of 17) intron (NM_009148, intron 12 of 17) -196362 NM_028886 74354 Mm.127952 XM_133060 ENSMUSG00000056215 Lrguk 4921528H16Rik leucine-rich repeats and guanylate kinase domain containing 0.000000 0.503185 -6.478489 chr5-430 chr5 8127058 8127214 + 35.6 NA exon (NM_001098225, exon 22 of 30) exon (NM_001098225, exon 22 of 30) 64589 NM_001080974 109552 Mm.96211 NM_001080974 ENSMUSG00000003161 Sri 2210417O06Rik|2900070H08Rik|Sor sorcin 0.006410 0.445860 -3.569650 chr16-204 chr16 52255639 52255795 + 35.6 NA intron (NM_009655, intron 1 of 15) intron (NM_009655, intron 1 of 15) 116628 NM_009655 11658 Mm.288282 NM_009655 ENSMUSG00000022636 Alcam AI853494|BEN|CD166|DM-GRASP|MGC27910|MuSC|SC1 activated leukocyte cell adhesion molecule 0.006410 0.401274 -3.481083 chr18-188 chr18 55032008 55032164 + 35.6 NA intron (NM_175751, intron 3 of 9) intron (NM_175751, intron 3 of 9) 83463 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.006410 0.401274 -2.809226 chr15-207 chr15 82996828 82996984 + 35.6 NA intron (NM_029787, intron 1 of 8) intron (NM_029787, intron 1 of 8) 3068 NM_029787 109754 Mm.22560 NM_029787 ENSMUSG00000018042 Cyb5r3 0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3 cytochrome b5 reductase 3 0.006410 0.554140 -3.323809 chr16-224 chr16 97376429 97376585 + 35.6 NA Intergenic RLTR27|LTR|ERVK -85130 NM_019517 56175 Mm.97885 NM_019517 ENSMUSG00000040605 Bace2 1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP21|BAE2|CDA13|CEAP1|DRAP beta-site APP-cleaving enzyme 2 0.051282 0.509554 -9.667551 chr6-315 chr6 131662397 131662553 + 35.6 NA Intergenic Lx|LINE|L1 -6719 NM_207019 387346 Mm.377908 NM_207019 ENSMUSG00000063478 Tas2r114 T2R14|Tas2r14|mGR14|mt2r46 taste receptor, type 2, member 114 0.006410 0.382166 -2.697426 chr5-440 chr5 29946603 29946759 + 35.6 NA intron (NM_133907, intron 11 of 22) intron (NM_133907, intron 11 of 22) 46653 NM_133907 100763 Mm.137746 NM_133907 ENSMUSG00000039000 Ube3c AI853514|mKIAA0010 ubiquitin protein ligase E3C 0.000000 0.388535 -2.435648 chr17-254 chr17 41354728 41354884 + 35.6 NA Intergenic Intergenic -424624 NM_028474 627626 Mm.390999 XM_001000454 3110082D06Rik Gm321 RIKEN cDNA 3110082D06 gene 0.006410 0.471338 -3.701925 chr5-445 chr5 32622852 32623008 + 35.6 NA intron (NM_001081407, intron 50 of 58) intron (NM_001081407, intron 50 of 58) -7230 NM_172147 665270 Mm.160067 NM_001081407 ENSMUSG00000029134 Plb1 4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606|MGC40917 phospholipase B1 0.025641 0.515924 2.635792 chr2-363 chr2 33871119 33871275 + 35.6 NA Intergenic Intergenic -161242 NM_175184 72543 Mm.254914 NM_175184 ENSMUSG00000038740 Fam125b 2610200O14Rik|2610528K11Rik|AI414895 family with sequence similarity 125, member B 0.006410 0.363057 5.925380 chr17-249 chr17 39007841 39007997 + 35.6 NA Intergenic Intergenic -322829 NM_001177582 100126779 Mm.471589 NM_001177582 Esp23 - exocrine gland-secreting peptide 23 0.000000 0.369427 -1.600108 chr3-286 chr3 51926913 51927069 + 35.6 NA intron (NM_001004176, intron 2 of 4) intron (NM_001004176, intron 2 of 4) 177870 NM_174995 211666 Mm.24679 NM_174995 ENSMUSG00000074604 Mgst2 GST2|MGC41409|MGST-II microsomal glutathione S-transferase 2 0.006410 0.337580 -0.699549 chr13-261 chr13 113507678 113507834 + 35.6 NA Intergenic Intergenic -77191 NM_010560 16195 Mm.4364 NM_010560 ENSMUSG00000021756 Il6st 5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130 interleukin 6 signal transducer 0.006410 0.414013 -1.515444 chr9-404 chr9 115576204 115576360 + 35.6 NA Intergenic Intergenic -181870 NM_028638 73748 Mm.29221 XM_135211 ENSMUSG00000056880 Gadl1 1110027M19Rik glutamate decarboxylase-like 1 0.012821 0.490446 -8.065558 chr9-390 chr9 92276779 92276935 + 35.6 NA intron (NM_178711, intron 3 of 8) intron (NM_178711, intron 3 of 8) 15709 NM_178711 235527 Mm.55289 NM_178711 ENSMUSG00000032377 Plscr4 AV245873 phospholipid scramblase 4 0.000000 0.350318 -3.620888 chr5-481 chr5 99738364 99738520 + 35.6 NA intron (NR_030692, intron 2 of 3) intron (NR_030692, intron 2 of 3) 230920 NR_030692 319818 Mm.448257 XM_001475144 ENSMUSG00000056908 A930011G23Rik - RIKEN cDNA A930011G23 gene 0.025641 0.343949 -3.673659 chr2-351 chr2 18980528 18980684 + 35.6 NA Intergenic Intergenic 64534 NR_024323 74629 Mm.117687 NR_024323 4930426L09Rik - RIKEN cDNA 4930426L09 gene 0.012821 0.420382 -4.296546 chr17-242 chr17 30546813 30546969 + 35.6 NA intron (NM_013811, intron 85 of 92) intron (NM_013811, intron 85 of 92) -81987 NM_021332 14652 Mm.390969 NM_021332 ENSMUSG00000024027 Glp1r GLP-1R|GLP1Rc glucagon-like peptide 1 receptor 0.006410 0.439490 2.699768 chr2-449 chr2 173054993 173055149 + 35.6 NA Intergenic ORR1D2|LTR|MaLR -110459 NM_028158 72221 Mm.46132 XM_884453 ENSMUSG00000027518 1700021F07Rik - RIKEN cDNA 1700021F07 gene 0.012821 0.547771 3.909233 chr1-495 chr1 72519669 72519825 + 35.6 NA intron (NM_018817, intron 2 of 16) intron (NM_018817, intron 2 of 16) 3290 NM_018817 54380 Mm.274232 NM_018817 ENSMUSG00000039354 Smarcal1 6030401P21Rik|Mharp SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 0.019231 0.477707 -0.138683 chrX-51 chrX 137655783 137655939 + 35.6 NA Intergenic Intergenic -18958 NM_019477 50790 Mm.391337 NM_001033600 ENSMUSG00000031278 Acsl4 9430020A05Rik|ACS4|AU018108|Facl4|Lacs4 acyl-CoA synthetase long-chain family member 4 0.006410 0.458599 -1.592541 chr12-362 chr12 99737712 99737868 + 35.6 NA intron (NM_183186, intron 3 of 5) intron (NM_183186, intron 3 of 5) 113334 NM_183186 71375 Mm.480620 XM_001473733 ENSMUSG00000033713 Foxn3 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1|MGC107530|MGC36260 forkhead box N3 0.019231 0.515924 -7.286400 chr8-290 chr8 98187660 98187816 + 35.6 NA intron (NM_145601, intron 7 of 12) intron (NM_145601, intron 7 of 12) 7976 NM_145601 234586 Mm.172488 NM_145601 ENSMUSG00000058253 BC016201 MGC27656 cDNA sequence BC016201 0.012821 0.464968 -2.617816 chr8-313 chr8 126223669 126223825 + 35.6 NA intron (NM_172287, intron 1 of 14) intron (NM_172287, intron 1 of 14) 4945 NM_172287 234857 Mm.150200 NM_172287 ENSMUSG00000010154 Spire2 BC026502|KIAA1832|MGC31610|Spir-2|Spir2 spire homolog 2 (Drosophila) 0.006410 0.585987 -3.003338 chr2-403 chr2 94084615 94084771 + 35.6 NA Intergenic Intergenic -22455 NR_030431 735259 NR_030431 Mir670 Mirn670|mmu-mir-670 microRNA 670 0.019231 0.496815 -2.733945 chr7-276 chr7 117301431 117301587 + 35.6 NA intron (NM_175645, intron 2 of 11) intron (NM_175645, intron 2 of 11) 129382 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.000000 0.547771 -1.259827 chr4-383 chr4 85517463 85517619 + 35.6 NA Intergenic Intergenic -7604 NM_029967 77739 Mm.331690 NM_029967 ENSMUSG00000066113 Adamtsl1 5930437A14Rik|6720426B09Rik|ADAMTSL-1 ADAMTS-like 1 0.000000 0.369427 -6.806810 chr4-353 chr4 19608277 19608433 + 35.6 NA intron (NM_177327, intron 2 of 24) intron (NM_177327, intron 2 of 24) 27785 NM_177327 107568 Mm.78312 NM_177327 ENSMUSG00000041058 Wwp1 8030445B08Rik|AIP5|SDRP1|Tiul1 WW domain containing E3 ubiquitin protein ligase 1 0.000000 0.369427 1.767827 chr9-380 chr9 69810357 69810513 + 35.6 NA Intergenic Intergenic -1278 NM_001039519 235459 Mm.293117 NM_001039519 ENSMUSG00000033543 Gtf2a2 12kDa|TfIIg general transcription factor II A, 2 0.000000 0.414013 -3.151336 chr11-431 chr11 103011120 103011276 + 35.6 NA intron (NM_019679, intron 17 of 26) intron (NM_019679, intron 17 of 26) 23324 NM_177801 328019 Mm.189646 NM_177801 ENSMUSG00000044787 4933400C05Rik VAD1.2 RIKEN cDNA 4933400C05 gene 0.012821 0.490446 -3.472535 chr5-547 chr5 145201612 145201768 + 35.6 NA intron (NM_001038627, intron 1 of 17) intron (NM_001038627, intron 1 of 17) 17667 NM_029438 75788 Mm.27735 NM_001038627 ENSMUSG00000038780 Smurf1 4930431E10Rik|mKIAA1625 SMAD specific E3 ubiquitin protein ligase 1 0.000000 0.503185 0.946772 chr19-127 chr19 47576453 47576609 + 35.6 NA intron (NM_175360, intron 4 of 9) intron (NM_175360, intron 4 of 9) 13800 NM_175360 108689 Mm.218048 NM_175360 ENSMUSG00000042694 Obfc1 0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32 oligonucleotide/oligosaccharide-binding fold containing 1 0.012821 0.477707 -4.496294 chr2-370 chr2 48690648 48690804 + 35.6 NA intron (NM_007396, intron 1 of 10) intron (NM_007396, intron 1 of 10) 54609 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA 0.006410 0.369427 -1.340217 chr8-309 chr8 123475063 123475219 + 35.6 NA promoter-TSS (NM_178856) promoter-TSS (NM_178856) -89 NM_178856 272551 Mm.334856 NM_178856 ENSMUSG00000031821 Gins2 2210013I18Rik|4833427B12Rik|AI323585|Pfs2 GINS complex subunit 2 (Psf2 homolog) 0.115385 0.662420 0.575933 chr13-233 chr13 63235518 63235674 + 35.6 NA intron (NM_028079, intron 10 of 14) intron (NM_028079, intron 10 of 14) -74109 NR_029530 387217 NR_029530 Mir23b Mirn23b|mmu-mir-23b microRNA 23b 0.000000 0.458599 -1.819934 chr5-438 chr5 28640368 28640524 + 35.6 NA Intergenic Intergenic -7529 NM_028234 381626 Mm.304075 XM_355585 ENSMUSG00000048271 Rbm33 3200001K10Rik|6430512A10Rik|AA386890|Prr8 RNA binding motif protein 33 0.006410 0.388535 11.474380 chr5-513 chr5 125658180 125658336 + 35.6 NA Intergenic Intergenic 21720 NM_019639 22190 Mm.331 XM_001471699 ENSMUSG00000008348 Ubc 2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb ubiquitin C 0.012821 0.458599 -6.188701 chr19-120 chr19 42072538 42072694 + 35.6 NA intron (NM_145500, intron 1 of 2) intron (NM_145500, intron 1 of 2) -16732 NM_020033 56642 Mm.143737 NM_020033 ENSMUSG00000025172 Ankrd2 Arpp|mArpp ankyrin repeat domain 2 (stretch responsive muscle) 0.012821 0.452229 -2.901263 chr6-296 chr6 102555548 102555704 + 35.6 NA Intergenic Intergenic -124861 NM_008779 18488 Mm.435479 NM_008779 ENSMUSG00000030075 Cntn3 Pang contactin 3 0.006410 0.439490 4.449028 chr3-281 chr3 32226722 32226878 + 35.6 NA intron (NM_028231, intron 2 of 5) intron (NM_028231, intron 2 of 5) 133220 NM_028231 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik|MGC57945 potassium large conductance calcium-activated channel, subfamily M, beta member 2 0.006410 0.452229 -4.978207 chr16-214 chr16 85645407 85645563 + 35.6 NA Intergenic Intergenic 46826 NM_009621 11504 Mm.1421 NM_009621 ENSMUSG00000022893 Adamts1 ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 0.012821 0.509554 -4.569188 chr10-306 chr10 95690166 95690322 + 35.6 NA Intergenic Intergenic 319894 NM_001001932 216238 Mm.476895 NM_001001932 ENSMUSG00000036499 Eea1 A430109M19Rik|B230358H09Rik|ZFYVE2 early endosome antigen 1 0.006410 0.388535 1.863152 chr2-421 chr2 130075322 130075478 + 35.6 NA Intergenic Intergenic 13670 NM_019696 56264 Mm.112701 NM_019696 ENSMUSG00000027408 Cpxm1 AA986902|Cpx-1|Cpx1|Cpxm carboxypeptidase X 1 (M14 family) 0.012821 0.369427 -8.556443 chr8-286 chr8 86096149 86096305 + 35.6 NA intron (NM_001111304, intron 1 of 20) intron (NM_001111304, intron 1 of 20) 40771 NM_027758 71310 Mm.24031 NM_001111304 ENSMUSG00000031709 Tbc1d9 4933431N12Rik|AI847101|AW490653|C76116 TBC1 domain family, member 9 0.019231 0.420382 -5.485522 chr11-402 chr11 79608038 79608194 + 35.6 NA Intergenic MLT1D|LTR|MaLR 65522 NR_029959 723853 NR_029959 Mir365-2 Mirn365-2 microRNA 365-2 0.012821 0.426752 -1.259827 chr18-208 chr18 81992630 81992786 + 35.6 NA Intergenic Intergenic 548497 NM_008082 14427 Mm.6219 NM_008082 ENSMUSG00000024553 Galr1 Galnr1 galanin receptor 1 0.025641 0.484076 -3.351397 chr8-282 chr8 76239101 76239257 + 35.6 NA intron (NM_010687, intron 1 of 14) intron (NM_010687, intron 1 of 14) 9449 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large BPFD#36|Gyltl1a|Mbp-1|Mbp1|enr|fg|froggy|mKIAA0609|myd like-glycosyltransferase 0.000000 0.420382 -2.378097 chr8-302 chr8 122682283 122682439 + 35.6 NA Intergenic Intergenic -17968 NM_028883 74347 Mm.358759 NM_028883 ENSMUSG00000034105 4632415K11Rik Kiaa1609 RIKEN cDNA 4632415K11 gene 0.006410 0.579618 -7.959447 chr2-456 chr2 181116065 181116221 + 35.6 NA promoter-TSS (NM_025598) promoter-TSS (NM_025598) -606 NM_025598 66496 Mm.213943 NM_025598 ENSMUSG00000016344 Ppdpf 0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene 0.032051 0.566879 4.994487 chr11-386 chr11 57576448 57576604 + 35.6 NA intron (NM_134189, intron 4 of 11) intron (NM_134189, intron 4 of 11) -41305 NM_001081168 50724 Mm.340083 NM_001081168 ENSMUSG00000020519 Sap30l 2310079P12Rik|AF006998|L55|MGC151406|MGC151408 SAP30-like 0.006410 0.433121 0.855245 chr7-256 chr7 89615301 89615457 + 35.6 NA intron (NM_181407, intron 3 of 13) intron (NM_181407, intron 3 of 13) 107370 NM_181407 109264 Mm.334011 NM_181407 ENSMUSG00000030621 Me3 1700020C08Rik|B230207H15Rik|MGC107389 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.012821 0.420382 1.923383 chr7-246 chr7 67090968 67091124 + 35.6 NA Intergenic Intergenic -10447 NM_175215 75099 Mm.121691 NM_001191051 ENSMUSG00000043831 Lysmd4 4930506D23Rik LysM, putative peptidoglycan-binding, domain containing 4 0.019231 0.509554 -3.461763 chr3-296 chr3 80862017 80862173 + 35.6 NA intron (NM_001083806, intron 2 of 15) intron (NM_001083806, intron 2 of 15) 26623 NM_013540 14800 Mm.220224 NM_001039195 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2 glutamate receptor, ionotropic, AMPA2 (alpha 2) 0.012821 0.452229 -7.610958 chr6-320 chr6 136969383 136969539 + 35.6 NA Intergenic Intergenic 50743 NM_023898 78600 Mm.290622 NM_023898 ENSMUSG00000064330 Pde6h A930033D18Rik|PDEgamma phosphodiesterase 6H, cGMP-specific, cone, gamma 0.006410 0.433121 -1.821864 chr4-388 chr4 89119943 89120099 + 35.6 NA Intergenic Intergenic -60194 NM_175647 242523 Mm.130167 NM_175647 ENSMUSG00000043753 Dmrta1 Dmrt4 doublesex and mab-3 related transcription factor like family A1 0.006410 0.337580 1.080206 chr5-528 chr5 137845320 137845476 + 35.6 NA intron (NM_027708, intron 8 of 9) intron (NM_027708, intron 8 of 9) -4206 NM_008788 18542 Mm.262345 NM_008788 ENSMUSG00000029718 Pcolce P14|PCPE-1 procollagen C-endopeptidase enhancer protein 0.025641 0.464968 -5.850739 chr1-560 chr1 172860655 172860811 + 35.6 NA intron (NM_144559, intron 3 of 4) intron (NM_144559, intron 3 of 4) 5133 NM_144559 246256 Mm.251254 NM_144559 ENSMUSG00000059089 Fcgr4 4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3 Fc receptor, IgG, low affinity IV 0.012821 0.452229 -6.669812 chr3-346 chr3 147246293 147246449 + 35.6 NA Intergenic Intergenic 456619 NM_027594 70892 Mm.187793 XM_001005473 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|Ttll7s tubulin tyrosine ligase-like family, member 7 0.000000 0.490446 -2.930144 chr4-343 chr4 9250540 9250696 + 35.6 NA intron (NM_028940, intron 2 of 5) intron (NM_028940, intron 2 of 5) 54155 NM_028940 74438 Mm.477282 NM_028940 ENSMUSG00000041216 Clvs1 4933402J24Rik|Clvl1|Rlbp1l1 clavesin 1 0.012821 0.471338 1.521865 chr10-288 chr10 75271410 75271566 + 35.6 NA Intergenic Intergenic -5229 NM_029472 75886 Mm.478439 NM_029472 ENSMUSG00000009093 Gstt4 4930583C14Rik|AI507011 glutathione S-transferase, theta 4 0.000000 0.585987 -4.233483 chr5-508 chr5 124459934 124460090 + 35.6 NA intron (NM_011256, intron 1 of 23) intron (NM_011256, intron 1 of 23) 17024 NM_011256 19679 Mm.44261 NM_011256 ENSMUSG00000029406 Pitpnm2 NIR3|RDGBA2|Rdgb2|mKIAA1457 phosphatidylinositol transfer protein, membrane-associated 2 0.012821 0.598726 -4.578801 chr3-273 chr3 22339427 22339583 + 35.6 NA intron (NM_030732, intron 1 of 15) intron (NM_030732, intron 1 of 15) 71781 NM_030732 81004 Mm.446265 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 transducin (beta)-like 1X-linked receptor 1 0.000000 0.420382 -4.184212 chr3-312 chr3 97547560 97547716 + 35.6 NA Intergenic L1_Mur3|LINE|L1 -51054 NM_146275 258272 Mm.377406 NM_146275 ENSMUSG00000051392 Olfr1402 MGC123878|MGC123879|MOR217-1 olfactory receptor 1402 0.006410 0.477707 -4.001246 chr10-281 chr10 69427479 69427635 + 35.6 NA Intergenic Intergenic -64920 NM_001111121 76551 Mm.281741 XM_618775 ENSMUSG00000048701 Ccdc6 2810012H18Rik|AA536681|AA960498|AW061011 coiled-coil domain containing 6 0.025641 0.490446 -4.173822 chr13-241 chr13 91219433 91219589 + 35.6 NA Intergenic Intergenic 160083 NM_001145879 435376 Mm.292579 XM_487300 ENSMUSG00000078958 Atp6ap1l EG435376 ATPase, H+ transporting, lysosomal accessory protein 1-like 0.006410 0.547771 -5.561953 chr13-248 chr13 99634344 99634500 + 35.6 NA Intergenic Intergenic 103145 NM_026685 68344 Mm.28766 NM_026685 ENSMUSG00000046082 Tmem174 0610009B10Rik|AA986094 transmembrane protein 174 0.025641 0.445860 -1.590797 chr2-391 chr2 74021168 74021324 + 35.6 NA Intergenic Intergenic -309113 NM_175015 228033 Mm.2966 NM_175015 ENSMUSG00000018770 Atp5g3 6030447M23|MGC124584 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) 0.000000 0.420382 -8.464306 chr18-203 chr18 78650910 78651066 + 35.6 NA intron (NM_207651, intron 2 of 21) intron (NM_207651, intron 2 of 21) 108040 NM_207651 27411 Mm.44158 NM_001110273 ENSMUSG00000024552 Slc14a2 MGC183591|UT-A1 solute carrier family 14 (urea transporter), member 2 0.032051 0.464968 -4.768462 chr8-273 chr8 64544347 64544503 + 35.6 NA intron (NM_001081390, intron 10 of 19) intron (NM_001081390, intron 10 of 19) 164550 NM_145595 234309 Mm.29059 NM_145595 ENSMUSG00000031641 Cbr4 A730083J17Rik|BC009118|MGC6971 carbonyl reductase 4 0.012821 0.388535 3.497363 chr12-288 chr12 25340976 25341132 + 35.6 NA Intergenic Intergenic 43722 NM_009104 20135 Mm.99 NM_009104 ENSMUSG00000020649 Rrm2 AA407299|MGC113712|R2 ribonucleotide reductase M2 0.000000 0.484076 -7.447692 chr5-507 chr5 124252814 124252970 + 35.6 NA intron (NM_145070, intron 7 of 31) intron (NM_145070, intron 7 of 31) 18647 NM_145070 29816 Mm.149954 NM_145070 ENSMUSG00000000915 Hip1r AA410023|mKIAA0655 huntingtin interacting protein 1 related 0.019231 0.535032 -1.945307 chr13-212 chr13 37061115 37061271 + 35.6 NA Intergenic Intergenic -3483 NM_001166391 74145 Mm.235105 NM_001166391 ENSMUSG00000039109 F13a1 1200014I03Rik|AI462306|F13a coagulation factor XIII, A1 subunit 0.000000 0.414013 2.275022 chr5-469 chr5 78891605 78891761 + 35.6 NA Intergenic Intergenic -305160 NR_027806 231332 Mm.373616 NR_027806 Pea15b - phosphoprotein enriched in astrocytes 15B 0.000000 0.414013 -7.079972 chr17-257 chr17 42570983 42571139 + 35.6 NA Intergenic B4A|SINE|B4 91023 NM_178589 94185 Mm.200792 NM_178589 ENSMUSG00000023915 Tnfrsf21 AA959878|DR6|R74815|TR7 tumor necrosis factor receptor superfamily, member 21 0.019231 0.477707 5.105762 chr11-417 chr11 93183295 93183451 + 35.6 NA intron (NM_028296, intron 3 of 8) intron (NM_028296, intron 3 of 8) 267994 NM_028296 72605 Mm.342160 NM_028296 ENSMUSG00000056158 Car10 2700029L05Rik|BB085816|Ca10 carbonic anhydrase 10 0.019231 0.407643 -6.094294 chr5-439 chr5 29582479 29582635 + 35.6 NA intron (NM_020295, intron 15 of 16) intron (NM_020295, intron 15 of 16) 53765 NM_021470 56874 Mm.477042 NM_021470 ENSMUSG00000029130 Rnf32 1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2|MGC107158 ring finger protein 32 0.000000 0.356688 0.161195 chr5-487 chr5 103739712 103739868 + 35.6 NA intron (NM_011204, intron 6 of 47) intron (NM_011204, intron 6 of 47) 74297 NM_011204 19249 Mm.3414 NM_011204 ENSMUSG00000034573 Ptpn13 AI324989|PTP-BL|Ptpri|RIP protein tyrosine phosphatase, non-receptor type 13 0.012821 0.484076 3.339009 chr15-201 chr15 76210665 76210821 + 35.6 NA intron (NM_175457, intron 1 of 43) intron (NM_175457, intron 1 of 43) 2976 NM_175457 223658 Mm.123240 NM_001162489 Heatr7a D330001F17Rik HEAT repeat containing 7A 0.000000 0.350318 3.340398 chr16-197 chr16 33805072 33805228 + 35.6 NA intron (NM_001145884, intron 5 of 14) intron (NM_001145884, intron 5 of 14) 55739 NM_001145884 16419 Mm.6424 NM_001145884 ENSMUSG00000022817 Itgb5 AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5 integrin beta 5 0.006410 0.407643 -4.925022 chr5-544 chr5 143783570 143783726 + 35.6 NA promoter-TSS (NM_009007) promoter-TSS (NM_009007) -37 NM_009007 19353 Mm.342177 NM_009007 ENSMUSG00000001847 Rac1 AL023026|D5Ertd559e RAS-related C3 botulinum substrate 1 0.108974 0.726115 -5.446585 chr1-568 chr1 182980878 182981034 + 35.6 NA promoter-TSS (NM_026171) promoter-TSS (NM_026171) -124 NM_026171 67459 Mm.263464 NM_026171 ENSMUSG00000026516 Nvl 1200009I24Rik nuclear VCP-like 0.064103 0.605096 2.877664 chr5-521 chr5 132813706 132813862 + 35.6 NA intron (NM_177047, intron 1 of 18) intron (NM_177047, intron 1 of 18) 13262 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.000000 0.541401 -8.603324 chr12-378 chr12 109359075 109359231 + 35.6 NA intron (NM_177602, intron 2 of 6) intron (NM_177602, intron 2 of 6) 17075 NM_177602 212198 Mm.342082 XM_001474974 Wdr25 B930090D16Rik WD repeat domain 25 0.006410 0.509554 -7.014261 chr6-263 chr6 54760750 54760906 + 35.6 NA intron (NM_199143, intron 1 of 4) intron (NM_199143, intron 1 of 4) 14335 NM_199143 387524 Mm.392146 NM_199143 ENSMUSG00000058446 Znrf2 1190002C14Rik|AU044205|D6Ertd365e|MGC129274|MGC129275 zinc and ring finger 2 0.012821 0.503185 -1.434065 chr2-389 chr2 71613387 71613543 + 35.6 NA intron (NM_008397, intron 1 of 25) intron (NM_008397, intron 1 of 25) 25544 NM_008397 16403 Mm.225096 NM_008397 ENSMUSG00000027111 Itga6 5033401O05Rik|AI115430|Cd49f integrin alpha 6 0.012821 0.401274 1.328212 chr12-356 chr12 95912693 95912849 + 35.6 NA Intergenic Intergenic -175285 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 KIAA0405 fibronectin leucine rich transmembrane protein 2 0.012821 0.439490 -1.644711 chr15-182 chr15 34623418 34623574 + 35.6 NA promoter-TSS (NM_145469) promoter-TSS (NM_145469) -201 NM_145469 223473 Mm.258402 NM_145469 ENSMUSG00000038879 Nipal2 9330161F08Rik|Npal2 NIPA-like domain containing 2 0.032051 0.528662 -3.142019 chr9-397 chr9 105076376 105076532 + 35.6 NA intron (NM_172461, intron 14 of 15) intron (NM_172461, intron 14 of 15) -73272 NM_028562 73532 Mm.23516 XM_001471746 ENSMUSG00000032566 1700080E11Rik AI429110|Tseg8 RIKEN cDNA 1700080E11 gene 0.025641 0.458599 -5.809155 chr12-312 chr12 47512442 47512598 + 35.6 NA Intergenic B3|SINE|B2 182212 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.012821 0.464968 -2.974458 chr18-182 chr18 46590085 46590241 + 35.6 NA TTS (NM_028086) TTS (NM_028086) 984 NM_028086 72076 Mm.82766 XM_128948 ENSMUSG00000046487 Mospd4 2010013H21Rik motile sperm domain containing 4 0.019231 0.382166 1.669616 chr9-388 chr9 85138844 85139000 + 35.6 NA Intergenic Intergenic -15054 NM_001160379 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.000000 0.426752 -0.572691 chr17-253 chr17 40691191 40691347 + 35.6 NA Intergenic Intergenic 293101 NM_008650 17850 Mm.259884 NM_008650 ENSMUSG00000023921 Mut D230010K02Rik|Mcm methylmalonyl-Coenzyme A mutase 0.000000 0.407643 -9.056973 chr11-365 chr11 7095343 7095499 + 35.6 NA Intergenic Intergenic -2368 NM_008341 16006 Mm.21300 NM_008341 ENSMUSG00000020429 Igfbp1 - insulin-like growth factor binding protein 1 0.000000 0.452229 1.775275 chr10-298 chr10 90096754 90096910 + 35.6 NA intron (NM_001128086, intron 16 of 24) intron (NM_001128086, intron 16 of 24) 90343 NM_181398 77531 Mm.477107 XM_001003400 Anks1b AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555|MGC102232 ankyrin repeat and sterile alpha motif domain containing 1B 0.000000 0.471338 -1.699618 chr11-443 chr11 111812329 111812485 + 35.6 NA Intergenic Intergenic 715039 NR_024085 217294 Mm.441922 XM_001476709 BC006965 MGC6956|MGC6983 cDNA sequence BC006965 0.012821 0.445860 -0.699527 chr2-426 chr2 139616545 139616701 + 35.6 NA intron (NM_001159640, intron 10 of 13) intron (NM_001159640, intron 10 of 13) 141578 NM_175225 75812 Mm.293449 NM_001159640 ENSMUSG00000039033 Tasp1 4930485D02Rik|AW986064 taspase, threonine aspartase 1 0.000000 0.458599 -7.447835 chr11-427 chr11 99106159 99106315 + 35.6 NA Intergenic Intergenic -4909 NM_029393 75706 Mm.46378 NM_029393 ENSMUSG00000020913 Krt24 2310058N18Rik|2310075C18Rik keratin 24 0.006410 0.414013 1.524701 chr13-217 chr13 44552551 44552707 + 35.6 NA Intergenic Intergenic -189245 NM_021878 16468 Mm.25059 NM_021878 ENSMUSG00000038518 Jarid2 AI317256|AU045941|C79929|C79931|Jmj|jumonji jumonji, AT rich interactive domain 2 0.025641 0.522293 3.052660 chr6-288 chr6 97640956 97641112 + 35.6 NA Intergenic Intergenic -57914 NM_145148 232288 Mm.27789 NM_145148 ENSMUSG00000030064 Frmd4b 6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013 FERM domain containing 4B 0.000000 0.414013 -5.598668 chr8-255 chr8 12073723 12073879 + 35.6 NA Intergenic Intergenic 233309 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.006410 0.535032 -3.307542 chr15-193 chr15 62395775 62395931 + 35.6 NA Intergenic Intergenic -346736 NR_003523 67552 Mm.4608 NR_003523 H2afy3 4933432H23Rik H2A histone family, member Y3 0.019231 0.541401 -5.313627 chr5-460 chr5 66897784 66897940 + 35.6 NA promoter-TSS (NM_009686) promoter-TSS (NM_009686) -56 NM_009686 11787 Mm.480622 NM_009686 ENSMUSG00000029207 Apbb2 2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra amyloid beta (A4) precursor protein-binding, family B, member 2 0.096154 0.681529 -3.473812 chr6-314 chr6 129179306 129179462 + 35.6 NA Intergenic Intergenic 33164 NM_053109 93694 Mm.197536 NM_053109 ENSMUSG00000030157 Clec2d Clr-b|Clrb|MGC123478|Ocil C-type lectin domain family 2, member d 0.000000 0.324841 -1.757091 chr8-294 chr8 114459050 114459206 + 35.6 NA intron (NM_001168623, intron 1 of 4) intron (NM_001168623, intron 1 of 4) 34113 NM_001168623 170737 Mm.271578 NM_001168621 ENSMUSG00000033545 Znrf1 B830022L21Rik|MGC101991|Rnf42|Zrfp1|nin283 zinc and ring finger 1 0.000000 0.407643 -1.108555 chr8-264 chr8 42873493 42873649 + 35.6 NA promoter-TSS (NM_019734) promoter-TSS (NM_019734) -57 NM_019734 11886 Mm.22547 NM_019734 ENSMUSG00000031591 Asah1 2310081N20Rik|AC|AL022942|AU044555|Asah N-acylsphingosine amidohydrolase 1 0.102564 0.713376 -5.147663 chr13-198 chr13 4770825 4770981 + 35.6 NA Intergenic Intergenic -162493 NM_018859 56043 Mm.251908 NM_018859 ENSMUSG00000045410 Akr1e1 1810061I10Rik|Akr1e2 aldo-keto reductase family 1, member E1 0.019231 0.496815 -1.755672 chr5-501 chr5 119094022 119094178 + 35.6 NA Intergenic Intergenic 272352 NM_172424 76199 Mm.206238 NM_172424 ENSMUSG00000018076 Med13l 2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025 mediator complex subunit 13-like 0.006410 0.484076 0.546415 chr14-106 chr14 20126728 20126884 + 35.6 NA intron (NM_134079, intron 7 of 10) intron (NM_134079, intron 7 of 10) -161599 NM_017479 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Myst4 AI507552|B130044K16Rik|KAT6B|Morf|mKIAA0383|qkf|querkopf MYST histone acetyltransferase monocytic leukemia 4 0.006410 0.464968 -1.804798 chr7-261 chr7 97356047 97356203 + 35.6 NA promoter-TSS (NM_027256) promoter-TSS (NM_027256) -22 NM_027256 101861 Mm.27383 NM_027256 ENSMUSG00000025133 Ints4 2610034N24Rik|AA692684|AW493223 integrator complex subunit 4 0.025641 0.573248 -0.804897 chr1-536 chr1 135813295 135813451 + 35.6 NA Intergenic Intergenic -40552 NM_021355 14264 Mm.287146 NM_021355 ENSMUSG00000041559 Fmod AI131919|AU041740|SLRR2E fibromodulin 0.012821 0.439490 0.573818 chr14-126 chr14 85418761 85418917 + 35.6 NA Intergenic T-rich|Low_complexity|Low_complexity 554022 NM_019670 56419 Mm.440585 NM_019670 ENSMUSG00000022021 Diap3 4930417P13Rik|Dia2|Diaph3|Drf3|KIAA4117|mDia2|mKIAA4117|p134MDia2 diaphanous homolog 3 (Drosophila) 0.012821 0.343949 -5.752089 chr1-519 chr1 91857836 91857992 + 35.6 NA Intergenic (CAGTA)n|Simple_repeat|Simple_repeat -12166 NM_139152 208372 Mm.215164 NM_139152 ENSMUSG00000067081 Asb18 Asb-18 ankyrin repeat and SOCS box-containing 18 0.006410 0.452229 -2.544392 chr16-182 chr16 13880299 13880455 + 35.6 NA Intergenic Intergenic 17822 NM_028968 74482 Mm.352698 NM_028968 Ifitm7 4933438K12Rik|Mil4 interferon induced transmembrane protein 7 0.025641 0.452229 -3.241120 chr12-341 chr12 81849017 81849173 + 35.6 NA Intergenic Intergenic -5800 NR_033786 67340 Mm.386790 NR_033786 1700052I22Rik - RIKEN cDNA 1700052I22 gene 0.012821 0.394904 -3.377870 chr9-327 chr9 6985199 6985355 + 35.6 NA intron (NM_029851, intron 82 of 88) intron (NM_029851, intron 82 of 88) 191769 NM_029851 110350 Mm.237596 NM_029851 ENSMUSG00000047193 Dync2h1 4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|mKIAA1997 dynein cytoplasmic 2 heavy chain 1 0.012821 0.318471 -7.983668 chr4-411 chr4 115546060 115546216 + 35.6 NA intron (NM_028142, intron 2 of 5) intron (NM_028142, intron 2 of 5) 5670 NM_028142 72181 Mm.282560 NM_028142 ENSMUSG00000028706 Nsun4 2310010O12Rik|2810405F18Rik|AI507900|Shtap NOL1/NOP2/Sun domain family, member 4 0.000000 0.439490 -2.450376 chr13-238 chr13 73791417 73791573 + 35.6 NA intron (NR_033306, intron 2 of 3) intron (NR_033306, intron 2 of 3) 2989 NR_033306 407785 Mm.29897 NM_010888 ENSMUSG00000021606 Ndufs6 BC059730|IP13|MGC107676 NADH dehydrogenase (ubiquinone) Fe-S protein 6 0.012821 0.535032 -2.173321 chr12-295 chr12 31880655 31880811 + 35.6 NA intron (NM_008482, intron 12 of 32) intron (NM_008482, intron 12 of 32) 29385 NM_008482 16777 Mm.172674 NM_008482 ENSMUSG00000002900 Lamb1 C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1 laminin B1 0.025641 0.496815 1.830282 chr10-291 chr10 80392222 80392378 + 35.6 NA intron (NM_001038655, intron 2 of 3) intron (NM_001038655, intron 2 of 3) 12194 NM_001038655 14708 Mm.222496 NM_001038655 ENSMUSG00000048240 Gng7 AI840417 guanine nucleotide binding protein (G protein), gamma 7 0.019231 0.554140 -4.368184 chr4-418 chr4 122740280 122740436 + 35.6 NA intron (NM_013905, intron 1 of 4) intron (NM_013905, intron 1 of 4) 4500 NM_013905 56198 Mm.103615 NM_013905 ENSMUSG00000032744 Heyl Hey3|Hrt3|bHLHb33|hesr3 hairy/enhancer-of-split related with YRPW motif-like 0.012821 0.528662 0.610530 chr1-484 chr1 59119393 59119549 + 35.6 NA exon (NM_028717, exon 26 of 34) exon (NM_028717, exon 26 of 34) -11536 NM_001164682 227157 Mm.474049 NM_001164682 ENSMUSG00000079550 Mpp4 Dlg6 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 0.019231 0.420382 -7.557398 chr10-264 chr10 25544512 25544668 + 35.6 NA Intergenic Intergenic -223080 NR_028030 100040851 Mm.478630 XM_001475247 ENSMUSG00000039098 Gm9767 ENSMUSG00000039098 predicted gene 9767 0.012821 0.445860 -3.446763 chr1-550 chr1 158876818 158876974 + 35.6 NA Intergenic Intergenic 68426 NM_028540 73435 Mm.116705 NM_028540 ENSMUSG00000026592 1700057K13Rik MGC118391|MGC144290 RIKEN cDNA 1700057K13 gene 0.006410 0.331210 -4.633866 chr12-338 chr12 81174711 81174867 + 35.6 NA intron (NM_134156, intron 1 of 20) intron (NM_134156, intron 1 of 20) 4422 NM_134156 109711 Mm.403477 NM_134156 ENSMUSG00000015143 Actn1 3110023F10Rik|Actn1a actinin, alpha 1 0.019231 0.484076 -3.696761 chr5-536 chr5 141621152 141621308 + 35.6 NA intron (NM_177879, intron 1 of 44) intron (NM_177879, intron 1 of 44) 127223 NM_177879 330222 Mm.406697 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik sidekick homolog 1 (chicken) 0.012821 0.471338 -5.725527 chr14-105 chr14 19229507 19229663 + 35.6 NA intron (NM_029698, intron 5 of 28) intron (NM_029698, intron 5 of 28) 11192 NM_001163638 76670 Mm.159759 XM_127606 ENSMUSG00000039543 Ttc18 5330402L21Rik tetratricopeptide repeat domain 18 0.000000 0.522293 -0.564803 chr4-382 chr4 84166274 84166430 + 35.6 NA Intergenic Intergenic -20035 NM_172870 242509 Mm.190774 NM_172870 ENSMUSG00000028487 Bnc2 5031434M05Rik|8430420F16Rik|MGC124423|MGC124424 basonuclin 2 0.012821 0.388535 -1.800885 chr9-330 chr9 18042511 18042667 + 35.6 NA promoter-TSS (NM_025844) promoter-TSS (NM_025844) -79 NM_025844 66917 Mm.479183 NM_025844 ENSMUSG00000001774 Chordc1 1110001O09Rik|AA409036|Chp-1|morgana cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 0.096154 0.630573 -7.679017 chr3-280 chr3 32165225 32165381 + 35.6 NA intron (NM_028231, intron 2 of 5) intron (NM_028231, intron 2 of 5) 71723 NM_028231 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik|MGC57945 potassium large conductance calcium-activated channel, subfamily M, beta member 2 0.000000 0.388535 -5.899457 chr2-372 chr2 51287804 51287960 + 35.6 NA Intergenic Intergenic -161637 NM_199158 387511 Mm.377918 NM_199158 ENSMUSG00000056115 Tas2r134 T2R134|Tas2r34 taste receptor, type 2, member 134 0.012821 0.445860 -3.278203 chr4-370 chr4 61993277 61993433 + 35.6 NA Intergenic Intergenic -4794 NM_024257 72748 Mm.41506 NM_024257 ENSMUSG00000038422 Hdhd3 2810435D12Rik haloacid dehalogenase-like hydrolase domain containing 3 0.000000 0.541401 -4.315990 chr7-277 chr7 121047190 121047346 + 35.6 NA Intergenic Intergenic -136175 NM_001081327 195646 Mm.247449 NM_001081327 ENSMUSG00000046321 Hs3st2 6430516N12Rik|A830061E14Rik|AW491345 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 0.012821 0.401274 -2.477131 chr17-231 chr17 25163901 25164057 + 35.6 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -2596 NM_001163691 58226 Mm.447208 NM_001163691 ENSMUSG00000024112 Cacna1h Cav3.2|MNCb-1209|alpha13.2 calcium channel, voltage-dependent, T type, alpha 1H subunit 0.019231 0.433121 -3.567813 chr13-230 chr13 57791786 57791942 + 35.6 NA intron (NM_001166464, intron 2 of 10) intron (NM_001166464, intron 2 of 10) 126091 NM_009262 20745 Mm.379020 NM_001166463 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 0.006410 0.452229 1.046999 chr4-346 chr4 11659232 11659388 + 35.6 NA Intergenic Intergenic -25993 NM_019753 12557 Mm.33402 NM_019753 ENSMUSG00000028217 Cdh17 HPT-1|HPT-1/LI cadherin 17 0.000000 0.547771 -3.424119 chr4-422 chr4 131182548 131182704 + 35.6 NA Intergenic Intergenic 36912 NM_020587 57317 Mm.2478 NM_020587 Srsf4 5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4 serine/arginine-rich splicing factor 4 0.025641 0.509554 -3.862085 chr6-268 chr6 72549320 72549476 + 35.6 NA Intergenic Intergenic -2889 NM_009443 22134 Mm.246563 XM_001471628 ENSMUSG00000056429 Tgoln1 AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1 trans-golgi network protein 0.000000 0.407643 -4.230770 chr1-514 chr1 82431842 82431998 + 35.6 NA intron (NM_007735, intron 4 of 47) intron (NM_007735, intron 4 of 47) 33953 NM_007735 12829 Mm.479772 NM_007735 ENSMUSG00000067158 Col4a4 E130010M05Rik|[a]4(IV) collagen, type IV, alpha 4 0.006410 0.426752 -2.953166 chr5-522 chr5 134999854 135000010 + 35.6 NA exon (NM_007925, exon 23 of 37) exon (NM_007925, exon 23 of 37) -26715 NM_010717 16885 Mm.15409 NM_010717 ENSMUSG00000029674 Limk1 - LIM-domain containing, protein kinase 0.012821 0.636943 4.170621 chr2-368 chr2 38593565 38593721 + 35.6 NA intron (NM_010264, intron 3 of 10) intron (NM_010264, intron 3 of 10) 12881 NM_001159548 14536 Mm.439703 NM_001159548 ENSMUSG00000063972 Nr6a1 1700113M01Rik|Gcnf|NCNF|RTR nuclear receptor subfamily 6, group A, member 1 0.006410 0.439490 -1.446564 chr11-375 chr11 33245219 33245375 + 35.6 NA intron (NM_023146, intron 14 of 27) intron (NM_023146, intron 14 of 27) -141709 NM_019916 27140 Mm.25362 NM_019916 ENSMUSG00000040610 Tlx3 Hox11l2|Rnx|Tlx1l2 T-cell leukemia, homeobox 3 0.012821 0.426752 -4.313396 chr3-320 chr3 103803416 103803572 + 35.6 NA Intergenic RLTR18B|LTR|ERVK 63568 NM_133859 99543 Mm.211535 NM_133859 ENSMUSG00000027848 Olfml3 2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3 olfactomedin-like 3 0.012821 0.426752 0.249862 chr10-293 chr10 85384397 85384553 + 35.6 NA intron (NM_145422, intron 2 of 11) intron (NM_145422, intron 2 of 11) 3117 NM_145422 28088 Mm.9257 NM_145422 ENSMUSG00000001783 D10Wsu52e AI255213|AI463255|HSPC117 DNA segment, Chr 10, Wayne State University 52, expressed 0.006410 0.452229 -1.974366 chr8-285 chr8 81533643 81533799 + 35.6 NA intron (NM_029736, intron 5 of 11) intron (NM_029736, intron 5 of 11) 128315 NM_029736 76775 Mm.334631 NM_029736 ENSMUSG00000031684 Slc10a7 2410193C02Rik|P7 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 0.012821 0.401274 0.951934 chr16-174 chr16 3823859 3824015 + 35.6 NA promoter-TSS (NM_029738) promoter-TSS (NM_029738) -20 NM_028484 73261 Mm.28403 NM_028484 ENSMUSG00000005983 1700037C18Rik 2810022L20Rik RIKEN cDNA 1700037C18 gene 0.070513 0.547771 -5.612881 chr11-394 chr11 65959023 65959179 + 35.6 NA intron (NM_001099633, intron 6 of 68) intron (NM_001099633, intron 6 of 68) 25645 NM_001099633 237806 Mm.459279 XM_110968 ENSMUSG00000056752 Dnahc9 9030022M04|A230091C01|C230051G16|D11Ertd686e|DNAH9|KIAA0357|mKIAA0357 dynein, axonemal, heavy chain 9 0.012821 0.458599 -0.976956 chr4-352 chr4 16101169 16101325 + 35.6 NA Intergenic Intergenic -10602 NM_138952 192656 Mm.112765 NM_138952 ENSMUSG00000041135 Ripk2 2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2 receptor (TNFRSF)-interacting serine-threonine kinase 2 0.006410 0.439490 -5.714010 chr6-283 chr6 93122436 93122592 + 35.6 NA Intergenic Intergenic 216429 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.000000 0.394904 -2.048970 chr5-550 chr5 149555501 149555657 + 35.6 NA Intergenic MLT1C|LTR|MaLR -19827 NM_009663 11690 Mm.19844 NM_009663 ENSMUSG00000060063 Alox5ap Flap arachidonate 5-lipoxygenase activating protein 0.012821 0.496815 3.966154 chr7-291 chr7 138269878 138270034 + 35.6 NA Intergenic Intergenic -33883 NM_183289 70571 Mm.334297 XM_916561 ENSMUSG00000045309 Tcerg1l 5730476P14Rik|MGC130171|MGC130172 transcription elongation regulator 1-like 0.000000 0.439490 -6.584336 chr6-271 chr6 83448194 83448350 + 35.6 NA intron (NM_013764, intron 4 of 6) intron (NM_013764, intron 4 of 6) 24355 NM_013764 27369 Mm.42234 NM_001162521 ENSMUSG00000014554 Dguok dGK|dGK1|dGK2|dGK3 deoxyguanosine kinase 0.006410 0.477707 -5.585291 chr1-551 chr1 159151876 159152032 + 35.6 NA intron (NM_177644, intron 1 of 17) intron (NM_177644, intron 1 of 17) -97074 NR_027984 69953 Mm.286863 NR_027984 2810025M15Rik AI429618 RIKEN cDNA 2810025M15 gene 0.006410 0.375796 -1.576813 chr3-321 chr3 104582621 104582777 + 35.6 NA TTS (NM_001025067) TTS (NM_001025067) 58218 NM_001025067 269473 Mm.34855 NM_001025067 ENSMUSG00000032913 Lrig2 4632419I10Rik|BB096938 leucine-rich repeats and immunoglobulin-like domains 2 0.006410 0.458599 3.646926 chr17-227 chr17 13656165 13656321 + 35.6 NA Intergenic Intergenic -28670 NM_001122977 635895 Mm.388844 XM_001473973 ENSMUSG00000067941 Gm7168 EG635895|MGC130373|MGC141510 predicted gene 7168 0.006410 0.522293 -4.423164 chr3-319 chr3 103764957 103765113 + 35.6 NA TTS (NM_018800) TTS (NM_018800) 60694 NM_018800 54524 Mm.88818 NM_018800 ENSMUSG00000027849 Syt6 3110037A08Rik|AW048930 synaptotagmin VI 0.006410 0.471338 -6.006410 chr5-529 chr5 138172983 138173139 + 35.6 NA Intergenic Intergenic 19686 NM_080450 118446 Mm.477152 NM_080450 ENSMUSG00000056966 Gjc3 Cx29|Gje1 gap junction protein, gamma 3 0.000000 0.375796 -3.564353 chrX-46 chrX 122280896 122281052 + 35.6 NA 3' UTR (NM_177705, exon 1 of 1) 3' UTR (NM_177705, exon 1 of 1) 2486 NM_177705 237029 Mm.60998 NM_177705 ENSMUSG00000058670 4932411N23Rik - RIKEN cDNA 4932411N23 gene 0.000000 0.331210 0.573818 chr6-258 chr6 51557216 51557372 + 35.6 NA Intergenic MLT1A|LTR|MaLR 83189 NM_001127348 71982 Mm.480375 NM_001127348 ENSMUSG00000038301 Snx10 2410004M09Rik sorting nexin 10 0.019231 0.484076 1.306082 chr10-270 chr10 41163438 41163594 + 35.6 NA Intergenic Intergenic -1212 NM_001164433 171580 Mm.290431 NM_001164433 ENSMUSG00000019823 Mical1 MGC27831|MGC38321|MICAL|Nical microtubule associated monoxygenase, calponin and LIM domain containing 1 0.006410 0.407643 3.340398 chr10-289 chr10 77512012 77512168 + 35.6 NA Intergenic Intergenic 39594 NM_015790 50723 Mm.17819 NM_015790 ENSMUSG00000000732 Icosl AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|KIAA0653|LICOS|Ly115l|mKIAA0653 icos ligand 0.019231 0.547771 -3.672450 chr9-407 chr9 116994561 116994717 + 35.6 NA intron (NM_001172123, intron 1 of 14) intron (NM_001172123, intron 1 of 14) 106542 NM_001172123 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.000000 0.445860 0.776825 chr1-496 chr1 72885069 72885225 + 35.6 NA Intergenic Intergenic 63959 NM_009407 21958 Mm.425024 NM_009407 ENSMUSG00000026182 Tnp1 Stp-1|TP1|Tp-1 transition protein 1 0.032051 0.560510 -1.839461 chr3-298 chr3 84520116 84520272 + 35.6 NA Intergenic Intergenic 46162 NM_001033301 229474 Mm.481803 NM_001033301 ENSMUSG00000041842 Fhdc1 6330505N24Rik|Gm126 FH2 domain containing 1 0.000000 0.522293 3.297479 chr5-480 chr5 99719614 99719770 + 35.6 NA intron (NR_030692, intron 2 of 3) intron (NR_030692, intron 2 of 3) -226463 NM_145839 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.019231 0.585987 -6.041086 chr19-99 chr19 3870536 3870692 + 35.6 NA intron (NM_013490, intron 2 of 10) intron (NM_013490, intron 2 of 10) 18842 NM_013490 12660 Mm.225505 NM_001025566 ENSMUSG00000024843 Chka Chetk-alpha|Chk|ChoK|EtnK-alpha choline kinase alpha 0.000000 0.420382 -5.031274 chr2-434 chr2 147653286 147653442 + 35.6 NA Intergenic Intergenic 85046 NM_010446 15376 Mm.938 NM_010446 ENSMUSG00000037025 Foxa2 HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b forkhead box A2 0.006410 0.515924 9.442584 chr8-316 chr8 128296768 128296924 + 35.6 NA Intergenic Intergenic 81954 NM_001081337 244668 Mm.463243 NM_001081337 ENSMUSG00000001995 Sipa1l2 BC058408|mKIAA1389 signal-induced proliferation-associated 1 like 2 0.012821 0.528662 5.392265 chr1-463 chr1 14082229 14082385 + 35.6 NA Intergenic Intergenic 213106 NM_010164 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor eyes absent 1 homolog (Drosophila) 0.012821 0.350318 -3.852383 chr3-345 chr3 146789792 146789948 + 35.6 NA 5' UTR (NM_027594, exon 1 of 21) 5' UTR (NM_027594, exon 1 of 21) 118 NM_027594 70892 Mm.187793 XM_001005473 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|Ttll7s tubulin tyrosine ligase-like family, member 7 0.096154 0.707006 -4.311155 chr4-443 chr4 150364130 150364286 + 35.6 NA intron (NM_001166021, intron 3 of 22) intron (NM_001166021, intron 3 of 22) 341349 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.032051 0.624204 3.181372 chr14-112 chr14 30641179 30641335 + 35.6 NA intron (NM_001024604, intron 1 of 27) intron (NM_001024604, intron 1 of 27) 18167 NM_001024604 105522 Mm.37660 NM_001024604 ENSMUSG00000014496 Ankrd28 AI465466|AI604979|E430019N21Rik|KIAA0379|mKIAA0379 ankyrin repeat domain 28 0.038462 0.477707 -8.575757 chr9-344 chr9 42026175 42026331 + 35.6 NA Intergenic ID_B1|SINE|B4 -10958 NM_172769 235293 Mm.470142 NM_172769 ENSMUSG00000032018 Sc5d A830037K02|A830073K23Rik|Sc5dl sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae) 0.000000 0.433121 -5.174946 chr12-303 chr12 38498839 38498995 + 35.6 NA intron (NM_178681, intron 2 of 24) intron (NM_178681, intron 2 of 24) 107947 NM_178681 217480 Mm.126525 NM_178681 ENSMUSG00000036095 Dgkb 6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718 diacylglycerol kinase, beta 0.000000 0.363057 -2.847773 chr5-546 chr5 144736663 144736819 + 35.6 NA Intergenic Intergenic -62672 NM_016789 53324 Mm.10099 NM_016789 ENSMUSG00000059991 Nptx2 Narp|np2 neuronal pentraxin 2 0.006410 0.426752 -6.401631 chr3-307 chr3 90317384 90317540 + 35.6 NA promoter-TSS (NM_206924) promoter-TSS (NM_206924) -61 NM_206924 23922 Mm.13912 NM_206924 ENSMUSG00000027937 Jtb Gm622 jumping translocation breakpoint 0.083333 0.598726 -3.960162 chr2-450 chr2 178630306 178630462 + 35.6 NA Intergenic ORR1D2|LTR|MaLR 270370 NM_198656 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010|MGC56946 cadherin-like 26 0.012821 0.547771 -10.291348 chr1-576 chr1 192696040 192696196 + 35.6 NA Intergenic Intergenic -16207 NR_027352 226841 Mm.22856 NM_144879 ENSMUSG00000037568 Vash2 B130052G07Rik|MGC38004 vasohibin 2 0.006410 0.439490 -3.394601 chr12-313 chr12 47635609 47635765 + 35.6 NA intron (NM_021361, intron 2 of 4) intron (NM_021361, intron 2 of 4) 59045 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.006410 0.490446 -7.510276 chr5-541 chr5 142855261 142855417 + 35.6 NA intron (NM_175217, intron 1 of 6) intron (NM_175217, intron 1 of 6) 5887 NM_175217 75104 Mm.48712 NM_175217 ENSMUSG00000039533 Mmd2 4930518M15Rik|C88001 monocyte to macrophage differentiation-associated 2 0.019231 0.503185 1.224972 chr12-367 chr12 102694071 102694227 + 35.6 NA intron (NM_001161365, intron 1 of 9) intron (NM_001161365, intron 1 of 9) 9459 NM_001161365 217835 Mm.24145 NM_001161365 ENSMUSG00000044456 Rin3 6430500K07|C86933 Ras and Rab interactor 3 0.012821 0.464968 -0.938742 chr15-183 chr15 36810001 36810157 + 35.6 NA Intergenic Intergenic -70952 NM_011740 22631 Mm.3360 NM_011740 ENSMUSG00000022285 Ywhaz 1110013I11Rik|AI596267|AL022924|AU020854 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 0.012821 0.471338 -5.814110 chr2-381 chr2 65788473 65788629 + 35.6 NA intron (NM_153409, intron 4 of 6) intron (NM_153409, intron 4 of 6) 137081 NM_015736 14425 Mm.439760 XM_885274 ENSMUSG00000026994 Galnt3 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 0.012821 0.433121 -7.138216 chr2-413 chr2 119099835 119099991 + 35.6 NA intron (NM_026574, intron 26 of 35) intron (NM_026574, intron 26 of 35) 57231 NM_026929 69065 Mm.35083 NM_026929 ENSMUSG00000027313 Chac1 1810008K03Rik ChaC, cation transport regulator-like 1 (E. coli) 0.025641 0.560510 5.203840 chr10-265 chr10 33948936 33949092 + 35.6 NA Intergenic Intergenic -22591 NM_009433 22110 Mm.20445 NM_009433 ENSMUSG00000047514 Tspyl1 Tspyl testis-specific protein, Y-encoded-like 1 0.006410 0.414013 -1.316373 chr4-359 chr4 43514042 43514071 + 35.6 NA promoter-TSS (NM_001037913) promoter-TSS (NM_001037913) 103 NR_001460 19782 NR_001460 Rmrp 1110032O22Rik|Rmrpr RNA component of mitochondrial RNAase P 0.172414 0.666667 -6.855129 chr12-385 chr12 117566976 117567132 + 35.6 NA intron (NM_011215, intron 12 of 22) intron (NM_011215, intron 12 of 22) 26224 NR_033538 100038689 Mm.445351 NR_033538 Gm10421 ENSMUSG00000072792 predicted gene 10421 0.006410 0.375796 -4.409564 chr11-404 chr11 81297549 81297705 + 35.6 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) 92107 NM_001033765 237880 Mm.435528 NM_001033765 1700071K01Rik - RIKEN cDNA 1700071K01 gene 0.006410 0.528662 -4.776264 chr10-290 chr10 80294413 80294569 + 35.6 NA intron (NM_001081688, intron 10 of 17) intron (NM_001081688, intron 10 of 17) 9607 NM_013895 30055 Mm.142132 NM_013895 ENSMUSG00000020219 Timm13 D10Ertd378e|Tim9|Timm9 translocase of inner mitochondrial membrane 13 homolog (yeast) 0.000000 0.407643 -10.823014 chr16-202 chr16 49643828 49643984 + 35.6 NA intron (NM_028680, intron 5 of 10) intron (NM_028680, intron 5 of 10) 24987 NM_028680 73916 Mm.404371 NM_028680 ENSMUSG00000032965 Ift57 4833420A15Rik|Esrrbl1|Hippi|MHS4R2 intraflagellar transport 57 homolog (Chlamydomonas) 0.000000 0.388535 -0.408029 chr5-530 chr5 139087145 139087301 + 35.6 NA Intergenic Intergenic 78501 NM_030565 80752 Mm.320355 NM_030565 ENSMUSG00000025854 Fam20c C76981|DMP-4|DMP4|KIAA4081|MGC7673|mKIAA4081 family with sequence similarity 20, member C 0.019231 0.598726 -3.866333 chr6-278 chr6 90911936 90912092 + 35.6 NA Intergenic Intergenic -136387 NM_001134384 232227 Mm.473438 XM_001479632 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 IQ motif and Sec7 domain 1 0.000000 0.458599 -1.671393 chr18-202 chr18 78295354 78295510 + 35.6 NA intron (NM_001171011, intron 1 of 8) intron (NM_001171011, intron 1 of 8) 8763 NM_001171011 108052 Mm.33832 NM_001171010 ENSMUSG00000059336 Slc14a1 2610507K20Rik|3021401A05Rik|UT-B|Utb1 solute carrier family 14 (urea transporter), member 1 0.012821 0.535032 4.159689 chr8-281 chr8 75913858 75914014 + 35.6 NA intron (NM_010687, intron 6 of 14) intron (NM_010687, intron 6 of 14) 255985 NM_007975 14065 Mm.12948 NM_007975 ENSMUSG00000050147 F2rl3 PAR4 coagulation factor II (thrombin) receptor-like 3 0.006410 0.401274 -4.633866 chr1-562 chr1 176373592 176373748 + 35.6 NA intron (NM_019445, intron 1 of 17) intron (NM_019445, intron 1 of 17) 35171 NM_019445 54418 Mm.330620 NM_019445 ENSMUSG00000028354 Fmn2 AU024104 formin 2 0.019231 0.541401 -0.618702 chr9-343 chr9 37338664 37338820 + 35.6 NA Intergenic Intergenic 24543 NM_011449 20686 Mm.8637 NM_011449 ENSMUSG00000001948 Spa17 Sp17 sperm autoantigenic protein 17 0.000000 0.369427 -2.256701 chr8-279 chr8 73558894 73559050 + 35.6 NA exon (NM_011819, exon 2 of 2) exon (NM_011819, exon 2 of 2) 1652 NM_011819 23886 Mm.31325 NM_011819 ENSMUSG00000038508 Gdf15 MIC-1|NAG-1|SBF growth differentiation factor 15 0.108974 0.719745 -1.434066 chr11-428 chr11 100898439 100898595 + 35.6 NA promoter-TSS (NM_027896) promoter-TSS (NM_027896) -197 NM_027896 71743 Mm.182271 NM_027896 ENSMUSG00000001755 Coasy 1300003G02Rik|Dpck|Ppat|Ukr1 Coenzyme A synthase 0.051282 0.535032 -4.872264 chr4-364 chr4 47217450 47217606 + 35.6 NA Intergenic L1ME4a|LINE|L1 -11583 NM_009928 12819 Mm.233547 NM_009928 ENSMUSG00000028339 Col15a1 - collagen, type XV, alpha 1 0.000000 0.369427 -5.785816 chr3-299 chr3 84962118 84962274 + 35.6 NA intron (NM_001177773, intron 3 of 13) intron (NM_001177773, intron 3 of 13) 12125 NM_001177774 50754 Mm.196475 NM_001177773 ENSMUSG00000028086 Fbxw7 1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10 F-box and WD-40 domain protein 7 0.000000 0.337580 -6.789879 chr11-416 chr11 93033487 93033643 + 35.6 NA intron (NM_028296, intron 2 of 8) intron (NM_028296, intron 2 of 8) 118186 NM_028296 72605 Mm.342160 NM_028296 ENSMUSG00000056158 Car10 2700029L05Rik|BB085816|Ca10 carbonic anhydrase 10 0.000000 0.343949 1.330818 chr13-242 chr13 95223030 95223186 + 35.6 NA intron (NM_172589, intron 2 of 3) intron (NM_172589, intron 2 of 3) 64560 NM_172589 218454 Mm.316553 NM_172589 ENSMUSG00000045312 Lhfpl2 6030465B15|AI447312|AW050335|mKIAA0206 lipoma HMGIC fusion partner-like 2 0.000000 0.414013 1.358407 chr5-506 chr5 123692838 123692994 + 35.6 NA intron (NM_133917, intron 1 of 16) intron (NM_133917, intron 1 of 16) 37480 NM_133917 208104 Mm.83277 NM_133917 ENSMUSG00000038342 Mlxip AW228700|B930074I24|Mir|bHLHe36|mKIAA0867 MLX interacting protein 0.012821 0.490446 -2.605107 chr5-500 chr5 117988316 117988472 + 35.6 NA intron (NM_001114545, intron 14 of 18) intron (NM_001114545, intron 14 of 18) -139754 NM_008712 18125 Mm.442195 NM_008712 ENSMUSG00000029361 Nos1 2310005C01Rik|NO|NOS-I|Nos-1|bNOS|nNOS nitric oxide synthase 1, neuronal 0.032051 0.464968 -7.147695 chr5-442 chr5 30981294 30981450 + 35.6 NA Intergenic Intergenic -7103 NM_023047 65254 Mm.27732 NM_023047 ENSMUSG00000029168 Dpysl5 CRAM|CRMP-5|Crmp5 dihydropyrimidinase-like 5 0.019231 0.471338 -2.176226 chr12-349 chr12 87686953 87687109 + 35.6 NA Intergenic Intergenic -71468 NM_144524 68737 Mm.63979 NM_144524 ENSMUSG00000021257 Angel1 1110030H02Rik|KIAA0759|mKIAA0759 angel homolog 1 (Drosophila) 0.006410 0.522293 -5.635009 chr15-209 chr15 83301847 83302003 + 35.6 NA Intergenic Intergenic -9553 NM_001159509 23970 Mm.23978 NM_001159509 ENSMUSG00000016664 Pacsin2 AI197433 protein kinase C and casein kinase substrate in neurons 2 0.012821 0.598726 -6.298394 chr4-410 chr4 111172742 111172898 + 35.6 NA Intergenic Intergenic -45121 NM_026470 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash spermatogenesis associated 6 0.000000 0.324841 -1.882675 chr13-239 chr13 73956886 73957042 + 35.6 NA intron (NM_145376, intron 3 of 13) intron (NM_145376, intron 3 of 13) 23580 NM_145376 210992 Mm.284649 NM_145376 ENSMUSG00000021608 Lpcat1 2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|MGC8148 lysophosphatidylcholine acyltransferase 1 0.006410 0.535032 -1.918237 chr14-127 chr14 96127565 96127721 + 35.6 NA Intergenic Intergenic -725475 NM_053105 93688 Mm.308735 NM_053105 ENSMUSG00000022076 Klhl1 KIAA1490|mKIAA1490 kelch-like 1 (Drosophila) 0.012821 0.382166 10.628647 chr17-275 chr17 72839630 72839786 + 35.6 NA intron (NM_029999, intron 2 of 2) intron (NM_029999, intron 2 of 2) 16404 NM_029999 77889 Mm.154109 XM_001480246 ENSMUSG00000024063 Lbh 1810009F10Rik|6720416L16Rik limb-bud and heart 0.012821 0.579618 1.344104 chr5-486 chr5 103295532 103295688 + 35.6 NA intron (NM_009158, intron 3 of 13) intron (NM_009158, intron 3 of 13) 156026 NM_001081567 26414 Mm.472459 NM_001081567 ENSMUSG00000046709 Mapk10 C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK mitogen-activated protein kinase 10 0.006410 0.420382 -2.490685 chr4-439 chr4 149292379 149292535 + 35.6 NA intron (NM_001085492, intron 4 of 22) intron (NM_001085492, intron 4 of 22) 166742 NM_001085492 68703 Mm.291274 XM_204015 ENSMUSG00000039852 Rere 1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|mKIAA0458 arginine glutamic acid dipeptide (RE) repeats 0.000000 0.426752 -3.700039 chr18-175 chr18 39181432 39181588 + 35.6 NA intron (NM_175164, intron 1 of 22) intron (NM_175164, intron 1 of 22) 62392 NM_175164 71302 Mm.329396 NM_175164 ENSMUSG00000036452 Arhgap26 1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621 Rho GTPase activating protein 26 0.025641 0.394904 -0.239483 chr15-184 chr15 41277423 41277579 + 35.6 NA promoter-TSS (NM_001130166) promoter-TSS (NM_001130166) -54 NM_001130166 170719 Mm.254267 NM_001130163 ENSMUSG00000022307 Oxr1 2210416C20Rik|C7|C7B|MGC103081|MGC107466 oxidation resistance 1 0.141026 0.745223 -6.164580 chr13-200 chr13 15393811 15393967 + 35.6 NA intron (NM_008130, intron 3 of 14) intron (NM_008130, intron 3 of 14) 139280 NM_008130 14634 Mm.5098 NM_008130 ENSMUSG00000021318 Gli3 AI854843|AU023367|Bph|Pdn|Xt|add GLI-Kruppel family member GLI3 0.012821 0.426752 -5.542699 chr4-417 chr4 120521692 120521848 + 35.6 NA Intergenic Intergenic -6888 NM_133716 69780 Mm.271819 NM_133716 ENSMUSG00000032870 Smap2 1810031K02Rik|AA408614|Smap1l stromal membrane-associated GTPase-activating protein 2 0.000000 0.458599 2.770259 chr6-313 chr6 128805652 128805808 + 35.6 NA Intergenic Intergenic -13796 NM_030599 80782 Mm.6180 NM_030599 ENSMUSG00000079298 Klrb1b Klrb1d|Ly55b|Ly55d|MGC163757|MGC163759|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1d killer cell lectin-like receptor subfamily B member 1B 0.019231 0.528662 3.790319 chr9-368 chr9 60276132 60276288 + 35.6 NA intron (NM_001040426, intron 3 of 17) intron (NM_001040426, intron 3 of 17) 32831 NM_001040426 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.006410 0.471338 -2.862083 chr3-301 chr3 85566991 85567147 + 35.6 NA Intergenic HAL1b|LINE|L1 -92986 NM_144896 229487 Mm.52275 NM_144896 ENSMUSG00000028085 Pet112l 9430026F02Rik|MGC11629 PET112-like (yeast) 0.032051 0.445860 3.179486 chr12-320 chr12 56413487 56413643 + 35.6 NA Intergenic Intergenic -2788 NM_010907 18035 Mm.170515 NM_010907 ENSMUSG00000021025 Nfkbia AI462015|Nfkbi nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha 0.006410 0.464968 -2.378097 chr4-403 chr4 105127563 105127719 + 35.6 NA Intergenic Intergenic 472363 NM_080555 67916 Mm.348326 NM_080555 ENSMUSG00000028517 Ppap2b 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b phosphatidic acid phosphatase type 2B 0.000000 0.394904 4.969311 chr15-192 chr15 61980032 61980188 + 35.6 NA intron (NR_003368, intron 3 of 8) intron (NR_003368, intron 3 of 8) 69007 NR_003523 67552 Mm.4608 NR_003523 H2afy3 4933432H23Rik H2A histone family, member Y3 0.012821 0.522293 -5.916441 chr7-283 chr7 124111826 124111982 + 35.6 NA Intergenic Intergenic -820307 NM_001081329 210162 Mm.135397 NM_001081329 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 0.019231 0.445860 1.010295 chr12-342 chr12 82809825 82809981 + 35.6 NA intron (NM_018814, intron 1 of 35) intron (NM_018814, intron 1 of 35) 31026 NM_018814 54604 Mm.86584 NM_018814 ENSMUSG00000021140 Pcnx 2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnxl1 pecanex homolog (Drosophila) 0.000000 0.484076 -1.042426 chr18-212 chr18 83961481 83961637 + 35.6 NA Intergenic Intergenic 259196 NM_001081300 110796 Mm.102136 NM_001081300 ENSMUSG00000046982 Tshz1 5730407I04Rik|D18Bwg1409e|KIAA4206|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1 teashirt zinc finger family member 1 0.025641 0.592357 3.170642 chr8-265 chr8 46186143 46186299 + 35.6 NA Intergenic Intergenic -262803 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT tumor suppressor homolog 1 (Drosophila) 0.012821 0.420382 0.278738 chr12-377 chr12 108834891 108835047 + 35.6 NA Intergenic Intergenic -23492 NM_001043336 68519 Mm.236645 NM_001043335 ENSMUSG00000058070 Eml1 1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|MGC158992 echinoderm microtubule associated protein like 1 0.019231 0.547771 -2.995517 chr12-370 chr12 104292935 104293091 + 35.6 NA Intergenic RLTR13A3|LTR|ERVK 12987 NM_009245 20702 Mm.439695 NM_009245 ENSMUSG00000079015 Serpina1c Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3 serine (or cysteine) peptidase inhibitor, clade A, member 1C 0.000000 0.414013 -7.709220 chr7-255 chr7 84526663 84526819 + 35.6 NA intron (NM_022985, intron 2 of 7) intron (NM_022985, intron 2 of 7) 28795 NM_022985 65098 Mm.397115 NM_022985 ENSMUSG00000030629 Zfand6 3110005P07Rik|Awp1|Za20d3 zinc finger, AN1-type domain 6 0.019231 0.464968 -3.457682 chr12-285 chr12 17139406 17139562 + 35.6 NA Intergenic Intergenic 62884 NM_201531 382571 Mm.40173 NM_201531 ENSMUSG00000051726 Kcnf1 Gm1182|Kv5.1|MGC62472 potassium voltage-gated channel, subfamily F, member 1 0.025641 0.509554 -4.261071 chr13-218 chr13 44629109 44629265 + 35.6 NA Intergenic Intergenic -112687 NM_021878 16468 Mm.25059 NM_021878 ENSMUSG00000038518 Jarid2 AI317256|AU045941|C79929|C79931|Jmj|jumonji jumonji, AT rich interactive domain 2 0.032051 0.407643 -2.101136 chr17-239 chr17 28005361 28005517 + 35.6 NA intron (NM_011145, intron 2 of 7) intron (NM_011145, intron 2 of 7) -35679 NR_028297 72775 Mm.201859 XM_001472126 ENSMUSG00000007570 Fance 2810451D06Rik|AI415634|AW209126 Fanconi anemia, complementation group E 0.038462 0.496815 -5.798721 chr13-250 chr13 100163999 100164155 + 35.6 NA Intergenic Intergenic -79355 NM_027064 69382 Mm.45466 XM_001473501 ENSMUSG00000045022 1700024P04Rik H2bl1|Subh2bv RIKEN cDNA 1700024P04 gene 0.012821 0.471338 3.619338 chr2-431 chr2 143592400 143592556 + 35.6 NA Intergenic Intergenic -14293 NM_019771 56431 Mm.28919 NM_019771 ENSMUSG00000015932 Dstn 2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p destrin 0.012821 0.554140 -5.508322 chr13-207 chr13 29378973 29379129 + 35.6 NA intron (NM_144536, intron 13 of 15) intron (NM_144536, intron 13 of 15) -417904 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.019231 0.420382 0.131720 chr9-399 chr9 107331060 107331216 + 35.6 NA intron (NM_001174048, intron 3 of 37) intron (NM_001174048, intron 3 of 37) -60907 NM_019704 56395 Mm.260153 NM_019704 ENSMUSG00000010045 Tmem115 C78915|Pl6|Pp6 transmembrane protein 115 0.019231 0.585987 3.696309 chr4-367 chr4 56737655 56737811 + 35.6 NA Intergenic Intergenic 97746 NM_025271 11471 Mm.251434 NM_025271 ENSMUSG00000070980 Actl7b MGC151192|MGC151194|Tact1 actin-like 7b 0.000000 0.496815 -0.577367 chr15-190 chr15 58337782 58337938 + 35.6 NA Intergenic Intergenic 92310 NM_145959 210998 Mm.3224 NM_145959 ENSMUSG00000037119 D15Ertd621e AV220772|BC033609|MGC40987|SKIN|mKIAA0493 DNA segment, Chr 15, ERATO Doi 621, expressed 0.025641 0.522293 -4.535811 chr11-437 chr11 108404883 108405039 + 35.6 NA intron (NM_029606, intron 19 of 27) intron (NM_029606, intron 19 of 27) -93737 NM_145688 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Ccdc46 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351 coiled-coil domain containing 46 0.006410 0.401274 -7.139081 chr18-206 chr18 80457338 80457494 + 35.6 NA 3' UTR (NM_001190373, exon 4 of 4) 3' UTR (NM_001190373, exon 4 of 4) 39052 NM_001164423 66943 Mm.29247 NM_001164420 ENSMUSG00000034006 Pqlc1 2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974 PQ loop repeat containing 1 0.000000 0.414013 -1.775946 chr8-304 chr8 123209078 123209234 + 35.6 NA Intergenic Intergenic -145710 NM_001033980 436062 Mm.334852 NM_001033980 ENSMUSG00000042269 Fam92b 1700120B06Rik family with sequence similarity 92, member B 0.044872 0.560510 -3.646072 chr9-352 chr9 46904770 46904926 + 35.6 NA Intergenic Intergenic 240251 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.032051 0.515924 3.597208 chr5-476 chr5 89628810 89628966 + 35.6 NA promoter-TSS (NM_023054) promoter-TSS (NM_023054) -155 NM_023054 65961 Mm.480663 NM_023054 ENSMUSG00000070697 Utp3 2400011K09Rik|AW557551|C87704|Crl1|Crlz1|Sas10 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) 0.089744 0.579618 -4.647956 chr12-340 chr12 81706543 81706699 + 35.6 NA Intergenic Intergenic -2785 NM_178682 217684 Mm.479895 NM_178682 ENSMUSG00000021133 4933426M11Rik mKIAA0247 RIKEN cDNA 4933426M11 gene 0.019231 0.579618 -6.015880 chr4-401 chr4 103829987 103830143 + 35.6 NA Intergenic Intergenic -35426 NM_010014 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled homolog 1 (Drosophila) 0.006410 0.388535 -1.377122 chr1-528 chr1 121933051 121933207 + 35.6 NA Intergenic Intergenic 15336 NM_001037999 13167 Mm.2785 NM_001037999 ENSMUSG00000026385 Dbi ACBD1|Acbp|EP|endozepine diazepam binding inhibitor 0.025641 0.490446 -4.142314 chr6-240 chr6 21985622 21985778 + 35.6 NA intron (NM_001081351, intron 2 of 21) intron (NM_001081351, intron 2 of 21) 49790 NM_001081351 214642 Mm.221404 NM_001081351 ENSMUSG00000062980 A430107O13Rik 6720481P07|AI552584 RIKEN cDNA A430107O13 gene 0.006410 0.496815 -2.500281 chr18-184 chr18 53550466 53550622 + 35.6 NA Intergenic Intergenic -7168 NM_008908 19038 Mm.4587 NM_008908 ENSMUSG00000024538 Ppic CyP-20c peptidylprolyl isomerase C 0.006410 0.369427 1.813594 chr6-259 chr6 52706005 52706161 + 35.6 NA intron (NM_001168277, intron 4 of 4) intron (NM_001168277, intron 4 of 4) 62777 NM_025816 52440 Mm.389757 NM_025816 ENSMUSG00000004535 Tax1bp1 1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151 Tax1 (human T-cell leukemia virus type I) binding protein 1 0.019231 0.515924 -0.526600 chr4-408 chr4 108778015 108778171 + 35.6 NA promoter-TSS (NM_007943) promoter-TSS (NM_007943) -113 NM_007943 13858 Mm.318250 NM_001159964 ENSMUSG00000028552 Eps15 2410112D09Rik epidermal growth factor receptor pathway substrate 15 0.096154 0.713376 -6.980473 chr17-272 chr17 71382153 71382309 + 35.6 NA Intergenic Intergenic -2031 NM_028887 74355 Mm.194450 NM_028887 ENSMUSG00000024054 Smchd1 4931400A14Rik|AW554188|MommeD1|mKIAA0650 SMC hinge domain containing 1 0.019231 0.388535 -1.483401 chr12-327 chr12 73979815 73979971 + 35.6 NA Intergenic Intergenic -14343 NM_009189 20471 Mm.4645 NM_009189 ENSMUSG00000051367 Six1 BB138287 sine oculis-related homeobox 1 homolog (Drosophila) 0.006410 0.426752 -1.763940 chr5-551 chr5 150790888 150791044 + 35.6 NA promoter-TSS (NM_009765) promoter-TSS (NM_009765) -35 NM_009765 12190 Mm.236256 NM_001081001 ENSMUSG00000041147 Brca2 AI256696|AW045498|Fancd1|RAB163 breast cancer 2 0.134615 0.694268 -2.289635 chr5-429 chr5 5254194 5254350 + 35.6 NA intron (NM_011074, intron 3 of 14) intron (NM_011074, intron 3 of 14) 131985 NM_011074 18647 Mm.404502 NM_011074 ENSMUSG00000028926 Cdk14 Pftk1|mKIAA0834 cyclin-dependent kinase 14 0.000000 0.439490 -0.588098 chr13-201 chr13 20190997 20191153 + 35.6 NA Intergenic Intergenic -1814 NM_080288 140580 Mm.342392 NM_080288 ENSMUSG00000041112 Elmo1 6330578D22Rik|AI173001|C230095H21Rik|CED-12|KIAA0281|mKIAA0281 engulfment and cell motility 1, ced-12 homolog (C. elegans) 0.006410 0.515924 -9.637578 chr9-329 chr9 13883894 13884050 + 35.6 NA Intergenic Intergenic -142725 NM_030261 75747 Mm.439776 NM_030261 ENSMUSG00000032009 Sesn3 5630400E15Rik|BC003348|MGC7182|SEST3 sestrin 3 0.000000 0.420382 0.394726 chr4-413 chr4 115684141 115684297 + 35.6 NA Intergenic B4A|SINE|B4 12916 NM_001099295 67323 Mm.45442 XM_001472749 ENSMUSG00000078593 1700042G07Rik - RIKEN cDNA 1700042G07 gene 0.012821 0.503185 5.817278 chr3-275 chr3 25785504 25785660 + 35.6 NA intron (NM_138666, intron 5 of 7) intron (NM_138666, intron 5 of 7) 558798 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.000000 0.401274 5.471813 chr6-303 chr6 115765159 115765315 + 35.6 NA intron (NM_025958, intron 12 of 14) intron (NM_025958, intron 12 of 14) 8485 NR_028546 100217451 Mm.104368 NR_028546 Snora7a MBI-141 small nucleolar RNA, H/ACA box 7A 0.019231 0.490446 -0.340155 chr9-338 chr9 31394787 31394943 + 35.6 NA Intergenic Intergenic -181062 NM_144936 235135 Mm.390134 NM_144936 ENSMUSG00000041737 Tmem45b BC018222|MGC25912|MGC37581 transmembrane protein 45b 0.012821 0.484076 -3.027004 chr4-378 chr4 81394791 81394947 + 35.6 NA Intergenic L1MC3|LINE|L1 -480833 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.019231 0.464968 -0.376498 chr17-268 chr17 63346432 63346588 + 35.6 NA Intergenic Intergenic -160468 NM_015794 50758 Mm.136366 XM_001478436 ENSMUSG00000023965 Fbxl17 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 F-box and leucine-rich repeat protein 17 0.012821 0.433121 -0.359782 chr14-124 chr14 78727753 78727909 + 35.6 NA Intergenic Intergenic -6625 NM_001030294 380924 Mm.26456 NM_001030294 ENSMUSG00000022026 Olfm4 GC1|GW112|Gm296|Gm913|OlfD|pPD4 olfactomedin 4 0.019231 0.343949 -0.005657 chr2-361 chr2 33412558 33412714 + 35.6 NA intron (NM_010725, intron 2 of 7) intron (NM_010725, intron 2 of 7) 49884 NM_010725 16917 Mm.39825 NM_010725 ENSMUSG00000038765 Lmx1b LMX1.1|LMX1.2|MGC159172 LIM homeobox transcription factor 1 beta 0.012821 0.509554 -2.613581 chr2-369 chr2 38651723 38651879 + 35.6 NA intron (NM_010264, intron 3 of 10) intron (NM_010264, intron 3 of 10) -22942 NR_029568 387176 NR_029568 Mir181a-2 Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a microRNA 181a-2 0.006410 0.401274 -2.257967 chr12-353 chr12 92074096 92074252 + 35.6 NA intron (NM_175367, intron 4 of 6) intron (NM_175367, intron 4 of 6) -78130 NM_175335 83602 Mm.275728 NM_031391 ENSMUSG00000020962 Gtf2a1 6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b general transcription factor II A, 1 0.012821 0.547771 -4.117878 chr9-392 chr9 96529188 96529344 + 35.6 NA intron (NM_175537, intron 1 of 2) intron (NM_175537, intron 1 of 2) 11761 NM_175537 245007 Mm.443626 NM_175537 ENSMUSG00000040433 Zbtb38 A930014K01Rik|CIBZ zinc finger and BTB domain containing 38 0.160256 0.777070 -4.403916 chr16-221 chr16 94478694 94478850 + 35.6 NA promoter-TSS (NM_009441) promoter-TSS (NM_009441) 356 NM_001159619 56176 Mm.474449 NM_001159616 ENSMUSG00000022940 Pigp Dcrc|Dscr5 phosphatidylinositol glycan anchor biosynthesis, class P 0.019231 0.382166 1.358407 chr12-381 chr12 112116975 112117131 + 35.6 NA TTS (NM_021273) TTS (NM_021273) 3093 NM_021273 12709 Mm.16831 NM_021273 ENSMUSG00000001270 Ckb B-CK|Bck|Ck-3|Ck3|Ckbb creatine kinase, brain 0.019231 0.528662 -4.106480 chr2-436 chr2 152506070 152506226 + 35.6 NA intron (NM_009743, intron 2 of 2) intron (NM_009743, intron 2 of 2) 16975 NM_009743 12048 Mm.238213 NM_009743 ENSMUSG00000007659 Bcl2l1 Bcl(X)L|Bcl-XL|Bcl-Xs|Bcl2l|BclX|MGC113803|MGC99998|bcl-x BCL2-like 1 0.006410 0.522293 -5.828793 chr1-502 chr1 74521322 74521383 + 35.6 NA promoter-TSS (NM_025784) promoter-TSS (NM_025784) -117 NM_029888 77264 Mm.207298 NM_029888 ENSMUSG00000026135 Zfp142 9330177B18Rik|BB154236|mKIAA0236 zinc finger protein 142 0.016393 0.532258 -5.491701 chr4-445 chr4 153559013 153559169 + 35.6 NA Intergenic Intergenic -47424 NM_028513 73353 Mm.30958 NM_028513 ENSMUSG00000051276 Actrt2 1700052K15Rik|Arp-T2|Arpm2 actin-related protein T2 0.025641 0.509554 -0.524615 chr11-393 chr11 65882160 65882316 + 35.6 NA intron (NM_001099633, intron 26 of 68) intron (NM_001099633, intron 26 of 68) 102508 NM_001099633 237806 Mm.459279 XM_110968 ENSMUSG00000056752 Dnahc9 9030022M04|A230091C01|C230051G16|D11Ertd686e|DNAH9|KIAA0357|mKIAA0357 dynein, axonemal, heavy chain 9 0.000000 0.369427 -0.588098 chr8-245 chr8 3388770 3388926 + 35.6 NA exon (NM_001033378, exon 11 of 11) exon (NM_001033378, exon 11 of 11) -4159 NM_133962 102098 Mm.170461 NM_133962 ENSMUSG00000004568 Arhgef18 AI467246|D030053O22Rik rho/rac guanine nucleotide exchange factor (GEF) 18 0.019231 0.464968 -7.686309 chr2-390 chr2 71957444 71957600 + 35.6 NA intron (NM_019688, intron 6 of 29) intron (NM_019688, intron 6 of 29) -128953 NM_023057 65964 Mm.314618 NM_001164791 ENSMUSG00000004085 B230120H23Rik AV006891|MLTK|MLTKalpha|MLTKbeta|Zak RIKEN cDNA B230120H23 gene 0.012821 0.375796 -6.802830 chr19-105 chr19 11041398 11041554 + 35.6 NA intron (NM_023529, intron 1 of 8) intron (NM_023529, intron 1 of 8) 239 NM_023529 69826 Mm.273404 NM_023529 ENSMUSG00000024731 Ms4a10 2010001N17Rik membrane-spanning 4-domains, subfamily A, member 10 0.006410 0.515924 -2.044564 chr11-379 chr11 51607018 51607174 + 35.6 NA promoter-TSS (NM_025535) promoter-TSS (NM_025535) 11 NM_025535 66397 Mm.196592 NM_025535 ENSMUSG00000020386 Sar1b 2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2 SAR1 gene homolog B (S. cerevisiae) 0.083333 0.675159 -3.798277 chr12-376 chr12 108158519 108158675 + 35.6 NA Intergenic Intergenic 292624 NM_001079883 58208 Mm.392694 NM_001079883 ENSMUSG00000048251 Bcl11b 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 B-cell leukemia/lymphoma 11B 0.000000 0.560510 2.247544 chr17-245 chr17 34676699 34676855 + 35.6 NA intron (NM_023463, intron 1 of 2) intron (NM_023463, intron 1 of 2) 1397 NM_023463 68468 Mm.215096 NM_023463 ENSMUSG00000007044 Ly6g6c 1110003M04Rik|AU016360|G6c|MGC144235|MGC144236|NG24 lymphocyte antigen 6 complex, locus G6C 0.032051 0.541401 0.945118 chr5-490 chr5 110338897 110339053 + 35.6 NA Intergenic Intergenic -1295 NM_207279 403178 Mm.297057 NM_207279 ENSMUSG00000064247 Plcxd1 A330045H12Rik|Gm576 phosphatidylinositol-specific phospholipase C, X domain containing 1 0.000000 0.547771 -6.959764 chr6-264 chr6 56634256 56634412 + 35.6 NA promoter-TSS (NM_025520) promoter-TSS (NM_025520) -57 NM_025520 66373 Mm.25642 NM_025520 Lsm5 2010208O10Rik|2310034K10Rik LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.057692 0.509554 -4.147851 chr4-396 chr4 98415207 98415363 + 35.6 NA promoter-TSS (NM_146144) promoter-TSS (NM_146144) -542 NM_146144 230484 Mm.371692 NM_146144 ENSMUSG00000028560 Usp1 MGC25559 ubiquitin specific peptidase 1 0.076923 0.643312 -3.897560 chr1-546 chr1 152898226 152898382 + 35.6 NA Intergenic Intergenic -142651 NM_001024720 545370 Mm.478581 NM_001024720 ENSMUSG00000066842 Hmcn1 EG545370|Gm201 hemicentin 1 0.019231 0.420382 -4.188972 chr4-423 chr4 131625580 131625736 + 35.6 NA intron (NR_003270, intron 1 of 2) intron (NR_003270, intron 1 of 2) 104 NR_003270 399101 Mm.84664 NR_003270 Snhg3 Rnu17d|U17HG small nucleolar RNA host gene (non-protein coding) 3 0.108974 0.668790 -4.184375 chr12-347 chr12 86937086 86937242 + 35.6 NA intron (NM_001081423, intron 33 of 33) intron (NM_001081423, intron 33 of 33) 30980 NM_009368 21809 Mm.3992 NM_009368 ENSMUSG00000021253 Tgfb3 MGC118722|Tgfb-3 transforming growth factor, beta 3 0.019231 0.471338 -3.867337 chr13-213 chr13 38001506 38001662 + 35.6 NA promoter-TSS (NM_025965) promoter-TSS (NM_025965) 72 NM_025965 107513 Mm.476789 NM_025965 ENSMUSG00000021427 Ssr1 2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA signal sequence receptor, alpha 0.108974 0.700637 -9.879207 chr7-273 chr7 114026661 114026817 + 35.6 NA intron (NM_033370, intron 11 of 21) intron (NM_033370, intron 11 of 21) 19122 NM_033370 70349 Mm.277024 NM_033370 ENSMUSG00000030754 Copb1 2610019B04Rik coatomer protein complex, subunit beta 1 0.006410 0.433121 2.277063 chr16-194 chr16 30433495 30433651 + 35.6 NA 3' UTR (NM_172614, exon 10 of 10) 3' UTR (NM_172614, exon 10 of 10) 36752 NM_172614 224090 Mm.241459 NM_172614 ENSMUSG00000022537 Tmem44 1700007N03Rik|9330161C17Rik|B230220N21 transmembrane protein 44 0.019231 0.585987 -3.347148 chr16-212 chr16 83924849 83925005 + 35.6 NA Intergenic Intergenic -671804 NR_029565 387173 Mm.261808 NR_029565 Mir155 Mirn155|mmu-mir-155 microRNA 155 0.006410 0.509554 -4.929848 chr16-208 chr16 78165841 78165997 + 35.6 NA Intergenic Intergenic -18363 NM_009988 13052 Mm.66222 NM_001025192 ENSMUSG00000022865 Cxadr 2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR coxsackie virus and adenovirus receptor 0.006410 0.426752 1.344104 chr11-429 chr11 101461249 101461405 + 35.6 NA Intergenic Intergenic 17289 NM_025654 66599 Mm.41449 NM_025654 ENSMUSG00000010362 Rdm1 2410008M22Rik|AW212028|Rad52b RAD52 motif 1 0.006410 0.388535 -7.985719 chr5-510 chr5 125400235 125400391 + 35.6 NA intron (NM_011424, intron 5 of 48) intron (NM_011424, intron 5 of 48) 67880 NM_011424 20602 Mm.278646 NM_011424 ENSMUSG00000029478 Ncor2 N-CoR|SMRT|SMRTe nuclear receptor co-repressor 2 0.019231 0.624204 -1.838325 chr3-268 chr3 18427744 18427900 + 35.6 NA intron (NM_007825, intron 1 of 5) intron (NM_007825, intron 1 of 5) 7667 NM_007825 13123 Mm.316000 NM_007825 ENSMUSG00000039519 Cyp7b1 AW261589|D3Ertd552e|hct-1 cytochrome P450, family 7, subfamily b, polypeptide 1 0.000000 0.407643 -3.622732 chr13-225 chr13 54319085 54319241 + 35.6 NA Intergenic Intergenic -61810 NM_009946 12890 Mm.268902 NM_009946 ENSMUSG00000025867 Cplx2 921-L|AI413745|AW492120 complexin 2 0.019231 0.585987 -0.444230 chr8-289 chr8 89359365 89359521 + 35.6 NA Intergenic Intergenic 97252 NM_172912 244562 Mm.67485 NM_172912 ENSMUSG00000036872 Abcc12 4930467B22Rik|MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 0.006410 0.445860 -0.251180 chr6-319 chr6 136693077 136693233 + 35.6 NA intron (NM_001127318, intron 13 of 26) intron (NM_001127318, intron 13 of 26) 52783 NM_145067 14917 Mm.222729 NM_001127318 ENSMUSG00000042638 Gucy2c AI893437|GC-C|Gcc|MGC107510 guanylate cyclase 2c 0.012821 0.598726 1.179223 chr3-347 chr3 147290612 147290768 + 35.6 NA Intergenic Intergenic 500938 NM_027594 70892 Mm.187793 XM_001005473 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|Ttll7s tubulin tyrosine ligase-like family, member 7 0.000000 0.343949 -2.079064 chr7-286 chr7 128558055 128558211 + 35.6 NA intron (NM_001029982, intron 11 of 18) intron (NM_001029982, intron 11 of 18) 22116 NM_001029982 207352 Mm.297105 NM_001029982 ENSMUSG00000055319 Sec23ip D7Ertd373e Sec23 interacting protein 0.000000 0.496815 -4.051822 chr9-393 chr9 96777024 96777180 + 35.6 NA intron (NM_145134, intron 2 of 2) intron (NM_145134, intron 2 of 2) 50605 NM_145134 211949 Mm.479991 NM_145134 ENSMUSG00000046997 Spsb4 D030068E18Rik|SSB-4|Ssb4 splA/ryanodine receptor domain and SOCS box containing 4 0.006410 0.382166 0.232414 chr17-271 chr17 64644518 64644674 + 35.6 NA intron (NM_008549, intron 20 of 21) intron (NM_008549, intron 20 of 21) 146657 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.006410 0.439490 -2.204295 chr15-203 chr15 78855587 78855743 + 35.6 NA 5' UTR (NM_008197, exon 1 of 1) 5' UTR (NM_008197, exon 1 of 1) 199 NM_008197 14958 Mm.24350 NM_008197 H1f0 D130017D06Rik|H1(0)|H1fv|MGC117919|MGC19309|MGC98218 H1 histone family, member 0 0.121795 0.719745 -10.860081 chr15-179 chr15 29382255 29382411 + 35.6 NA Intergenic Intergenic -734848 NM_008729 18163 Mm.321648 NM_008729 ENSMUSG00000022240 Ctnnd2 Catnd2|Nprap|neurojugin catenin (cadherin associated protein), delta 2 0.006410 0.363057 -3.331636 chr7-263 chr7 98724654 98724810 + 35.6 NA intron (NM_009519, intron 3 of 4) intron (NM_009519, intron 3 of 4) 10696 NM_009519 22411 Mm.22182 NM_009519 ENSMUSG00000015957 Wnt11 - wingless-related MMTV integration site 11 0.006410 0.496815 -4.635010 chr11-380 chr11 51611352 51611508 + 35.6 NA intron (NM_025535, intron 1 of 6) intron (NM_025535, intron 1 of 6) 4345 NM_025535 66397 Mm.196592 NM_025535 ENSMUSG00000020386 Sar1b 2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2 SAR1 gene homolog B (S. cerevisiae) 0.006410 0.445860 -3.208441 chr3-339 chr3 129823085 129823241 + 35.6 NA 5' UTR (NM_026578, exon 1 of 7) 5' UTR (NM_026578, exon 1 of 7) 255 NM_026578 68147 Mm.24873 NM_026578 ENSMUSG00000028010 Gar1 AA409823|AI326794|C430047J18Rik|Nola1 GAR1 ribonucleoprotein homolog (yeast) 0.160256 0.738854 -5.720273 chr2-393 chr2 75504269 75504425 + 35.6 NA intron (NM_010902, intron 1 of 4) intron (NM_010902, intron 1 of 4) 1133 NM_010902 18024 Mm.1025 NM_010902 ENSMUSG00000015839 Nfe2l2 AI194320|Nrf2 nuclear factor, erythroid derived 2, like 2 0.032051 0.566879 -2.600780 chr1-545 chr1 140410432 140410588 + 35.6 NA intron (NM_021605, intron 1 of 9) intron (NM_021605, intron 1 of 9) 25597 NM_021605 59125 Mm.143817 NM_021605 ENSMUSG00000026393 Nek7 2810460C19Rik|AU020186 NIMA (never in mitosis gene a)-related expressed kinase 7 0.012821 0.452229 -5.297050 chr1-552 chr1 159796833 159796989 + 35.6 NA Intergenic Lx9|LINE|L1 396026 NM_207583 240843 Mm.329579 NM_207583 ENSMUSG00000004031 Fam5b 6430517E21Rik|BB361039|mKIAA1747 family with sequence similarity 5, member B 0.000000 0.401274 3.258678 chr9-349 chr9 45349254 45349410 + 35.6 NA intron (NM_001081270, intron 3 of 32) intron (NM_001081270, intron 3 of 32) 168045 NM_001081270 114873 Mm.325499 NM_001081270 ENSMUSG00000032087 Dscaml1 4921507G06Rik|4930435C18Rik|BB239540|mKIAA1132 Down syndrome cell adhesion molecule-like 1 0.019231 0.560510 -2.072309 chr5-526 chr5 136391959 136392115 + 35.6 NA intron (NM_001039103, intron 18 of 19) intron (NM_001039103, intron 18 of 19) -9280 NM_011293 20022 Mm.4896 NM_011293 ENSMUSG00000039771 Polr2j 14.5kDa|Polr2i|Rpb11a|Rpo2-4 polymerase (RNA) II (DNA directed) polypeptide J 0.000000 0.439490 -3.684238 chr3-284 chr3 51244394 51244550 + 35.6 NA Intergenic Intergenic -67903 NM_009834 12457 Mm.86541 NM_009834 ENSMUSG00000023087 Ccrn4l AU043840|Ccr4|nocturnin CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.019231 0.490446 -5.863099 chr3-306 chr3 89069926 89070082 + 35.6 NA exon (NM_138679, exon 2 of 27) exon (NM_138679, exon 2 of 27) 18266 NM_138679 192195 Mm.130752 NM_138679 ENSMUSG00000028053 Ash1l 8030453L17Rik|Ash1|E430018P19Rik|Kmt2h ash1 (absent, small, or homeotic)-like (Drosophila) 0.000000 0.535032 3.325068 chr2-423 chr2 131671769 131671925 + 35.6 NA Intergenic (CAGAGA)n|Simple_repeat|Simple_repeat 29546 NM_001126338 26434 Mm.180750 NM_001126338 ENSMUSG00000027338 Prnd AI450264|Dpl|PrPLP|doppel prion protein dublet 0.000000 0.566879 -4.617527 chr15-215 chr15 101210955 101211111 + 35.6 NA Intergenic Intergenic -12874 NM_028770 74127 Mm.440055 NM_028770 ENSMUSG00000037185 Krt80 1200016G03Rik|2310041I20Rik|Kb20 keratin 80 0.032051 0.611465 -7.199300 chr17-229 chr17 14900081 14900237 + 35.6 NA Intergenic Intergenic 142138 NM_001034891 381062 Mm.458576 NM_001034891 ENSMUSG00000036552 2210404J11Rik 2410011O22Rik|AI448938 RIKEN cDNA 2210404J11 gene 0.019231 0.624204 -3.132850 chr1-559 chr1 171071962 171072118 + 35.6 NA Intergenic Intergenic 296099 NM_023284 66977 Mm.151315 NM_023284 ENSMUSG00000026683 Nuf2 2410003C07Rik|AU044112|C85691|Cdca1|NUF2R NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae) 0.006410 0.535032 -4.424652 chr3-297 chr3 84391384 84391540 + 35.6 NA Intergenic Intergenic -84658 NM_030706 80890 Mm.474162 NM_030706 ENSMUSG00000027993 Trim2 KIAA0517|mKIAA0517|narf tripartite motif-containing 2 0.032051 0.611465 -3.067558 chr3-324 chr3 108204735 108204891 + 35.6 NA intron (NM_028779, intron 12 of 17) intron (NM_028779, intron 12 of 17) 9870 NM_028779 109674 Mm.274335 NM_028779 ENSMUSG00000027889 Ampd2 1200014F01Rik|AI552571|Ampd-2 adenosine monophosphate deaminase 2 0.025641 0.573248 -4.211963 chr10-320 chr10 126714599 126714755 + 35.6 NA promoter-TSS (NM_001171582) promoter-TSS (NM_001171582) 58 NM_001003913 216443 Mm.28173 NM_001003913 ENSMUSG00000040354 Mars MGC90747|Metrs|Mtrns methionine-tRNA synthetase 0.089744 0.579618 3.103115 chr4-355 chr4 26597495 26597651 + 35.6 NA Intergenic Intergenic -160291 NM_172865 242362 Mm.245602 NM_172865 ENSMUSG00000040520 Manea 4932703L02Rik mannosidase, endo-alpha 0.012821 0.414013 -4.458825 chr6-252 chr6 39958025 39958181 + 35.6 NA Intergenic Intergenic -81756 NM_001004182 434008 Mm.130209 NM_001004182 ENSMUSG00000057716 Gm5567 EG434008 predicted gene 5567 0.000000 0.407643 0.083568 chr9-358 chr9 48536900 48537056 + 35.6 NA intron (NM_001033324, intron 2 of 6) intron (NM_001033324, intron 2 of 6) 50886 NM_001033324 235320 Mm.457803 NM_001033324 ENSMUSG00000066687 Zbtb16 AI467657|PLZF|Zfp145|lu zinc finger and BTB domain containing 16 0.025641 0.426752 -0.610228 chr5-482 chr5 100669709 100669865 + 35.6 NA promoter-TSS (NR_034038) promoter-TSS (NR_034038) 50 NR_034038 100041797 Mm.392282 XM_001474437 5430416N02Rik Gm3514 RIKEN cDNA 5430416N02 gene 0.096154 0.624204 -5.535910 chr8-258 chr8 37370440 37370596 + 35.6 NA Intergenic L1MC1|LINE|L1 -75442 NM_027998 71908 Mm.37817 NM_027998 ENSMUSG00000055976 Cldn23 2310014B08Rik claudin 23 0.000000 0.464968 -4.203965 chr6-326 chr6 147825524 147825680 + 35.6 NA Intergenic Intergenic 178192 NR_033636 100039727 Mm.396220 XM_001473389 1700049E15Rik Gm15761|OTTMUSG00000026044 RIKEN cDNA 1700049E15 gene 0.000000 0.350318 1.096199 chr17-287 chr17 87685279 87685435 + 35.6 NA intron (NM_199251, intron 1 of 1) intron (NM_199251, intron 1 of 1) 20963 NM_199251 210741 Mm.312046 NM_199251 ENSMUSG00000050138 Kcnk12 mntk1 potassium channel, subfamily K, member 12 0.006410 0.484076 -1.326989 chr16-179 chr16 9097301 9097457 + 35.6 NA Intergenic (CAGGA)n|Simple_repeat|Simple_repeat 351410 NM_001081400 69053 Mm.479940 XM_001480138 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|R74903 RIKEN cDNA 1810013L24 gene 0.000000 0.439490 -7.197369 chr7-278 chr7 121386619 121386775 + 35.6 NA Intergenic Intergenic 111704 NM_001033173 76179 Mm.122538 XM_357781 Usp31 6330567E21Rik|mKIAA1203 ubiquitin specific peptidase 31 0.006410 0.554140 0.150465 chr12-286 chr12 17601585 17601741 + 35.6 NA Intergenic Intergenic 31311 NM_013614 18263 Mm.34102 NM_013614 ENSMUSG00000011179 Odc1 MGC103389|ODC ornithine decarboxylase, structural 1 0.019231 0.579618 -6.696984 chr12-306 chr12 40671029 40671185 + 35.6 NA Intergenic Intergenic -26456 NM_009132 20259 Mm.2416 NM_001146196 ENSMUSG00000002565 Scin AW545522|adseverin scinderin 0.000000 0.420382 -2.241504 chr10-258 chr10 16198284 16198440 + 35.6 NA Intergenic Intergenic -1214281 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.012821 0.401274 -5.432670 chr2-418 chr2 126822843 126822999 + 35.6 NA intron (NM_144818, intron 1 of 17) intron (NM_144818, intron 1 of 17) 2474 NM_144818 215387 Mm.29786 NM_144818 ENSMUSG00000034906 Ncaph A730011O11Rik|Brrn1|HCAP-H|MGC38424|mKIAA0074 non-SMC condensin I complex, subunit H 0.025641 0.477707 -1.775946 chr6-285 chr6 93294448 93294604 + 35.6 NA Intergenic Intergenic 388441 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.000000 0.356688 -0.622578 chr8-266 chr8 46455903 46456059 + 35.6 NA intron (NM_001081286, intron 1 of 25) intron (NM_001081286, intron 1 of 25) 6957 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT tumor suppressor homolog 1 (Drosophila) 0.032051 0.509554 -6.170194 chr1-571 chr1 188630440 188630596 + 35.6 NA Intergenic Intergenic -37685 NM_033077 110957 Mm.108054 NM_033077 ENSMUSG00000039224 D1Pas1 AU016353|Pl10 DNA segment, Chr 1, Pasteur Institute 1 0.006410 0.324841 -3.695789 chr5-549 chr5 147343452 147343608 + 35.6 NA intron (NM_080795, intron 3 of 9) intron (NM_080795, intron 3 of 9) 43391 NM_080795 140887 Mm.272203 NM_080795 ENSMUSG00000016520 Lnx2 9630046H24|AW209022 ligand of numb-protein X 2 0.019231 0.535032 -5.147332 chr14-108 chr14 20354240 20354396 + 35.6 NA intron (NM_017479, intron 2 of 16) intron (NM_017479, intron 2 of 16) 65913 NM_017479 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Myst4 AI507552|B130044K16Rik|KAT6B|Morf|mKIAA0383|qkf|querkopf MYST histone acetyltransferase monocytic leukemia 4 0.032051 0.471338 -7.039830 chr4-395 chr4 96864927 96865083 + 35.6 NA Intergenic B3A|SINE|B2 -208955 NM_001122952 18027 Mm.409646 NM_001122952 ENSMUSG00000028565 Nfia 1110047K16Rik|9430022M17Rik|NF1-A|NF1A nuclear factor I/A 0.012821 0.445860 -8.153438 chr5-436 chr5 24596360 24596516 + 35.6 NA intron (NM_145401, intron 1 of 15) intron (NM_145401, intron 1 of 15) 14269 NM_145401 108099 Mm.33649 NM_001170555 ENSMUSG00000028944 Prkag2 2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit 0.012821 0.509554 -2.042792 chr14-131 chr14 100638444 100638600 + 35.6 NA intron (NM_201529, intron 1 of 30) intron (NM_201529, intron 1 of 30) 21988 NM_201529 380928 Mm.479274 XM_001472577 ENSMUSG00000033060 Lmo7 C78582|FBXO20|Gm914|mKIAA0858 LIM domain only 7 0.019231 0.452229 4.479887 chr2-382 chr2 66057542 66057698 + 35.6 NA promoter-TSS (NM_001047604) promoter-TSS (NM_001047604) -164 NM_001047604 73668 Mm.250868 NM_001047604 ENSMUSG00000034848 Ttc21b 2410066K11Rik|Thm1|aln|mKIAA1992 tetratricopeptide repeat domain 21B 0.070513 0.687898 1.499669 chr5-519 chr5 132575449 132575605 + 35.6 NA intron (NM_177047, intron 1 of 18) intron (NM_177047, intron 1 of 18) 251519 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.019231 0.394904 -5.272745 chr12-354 chr12 92995555 92995711 + 35.6 NA Intergenic Intergenic -740919 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.006410 0.426752 -4.482953 chr2-409 chr2 103449548 103449704 + 35.6 NA intron (NM_178890, intron 1 of 16) intron (NM_178890, intron 1 of 16) 82478 NM_178890 99382 Mm.35850 NM_178890 ENSMUSG00000032724 Abtb2 AW539457 ankyrin repeat and BTB (POZ) domain containing 2 0.012821 0.426752 -4.210144 chr11-465 chr11 120397583 120397645 + 35.6 NA promoter-TSS (NM_133796) promoter-TSS (NM_133796) 96 NM_133796 192662 Mm.474783 NM_133796 ENSMUSG00000025132 Arhgdia 5330430M07Rik|Gdi-1|MGC101921|MGC7904|Rho-GDI|RhoDGI|RhoGDI-1 Rho GDP dissociation inhibitor (GDI) alpha 0.177419 0.793651 -10.750663 chr13-202 chr13 23936245 23936401 + 35.6 NA Intergenic Intergenic 5298 NM_175663 319177 Mm.377879 NM_175663 ENSMUSG00000050799 Hist1h2ba - histone cluster 1, H2ba 0.006410 0.484076 -2.117759 chr4-402 chr4 104677422 104677578 + 35.6 NA intron (NM_080555, intron 1 of 5) intron (NM_080555, intron 1 of 5) 22222 NM_080555 67916 Mm.348326 NM_080555 ENSMUSG00000028517 Ppap2b 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b phosphatidic acid phosphatase type 2B 0.006410 0.477707 -2.128724 chr8-314 chr8 127450861 127451017 + 35.6 NA intron (NM_007428, intron 1 of 4) intron (NM_007428, intron 1 of 4) 4858 NM_007428 11606 Mm.301626 NM_007428 ENSMUSG00000031980 Agt AI265500|AngII|Aogen|Serpina8 angiotensinogen (serpin peptidase inhibitor, clade A, member 8) 0.038462 0.496815 -0.161063 chr10-315 chr10 118535696 118535852 + 35.6 NA Intergenic Intergenic 107341 NM_027994 71902 Mm.203965 XM_125901 ENSMUSG00000020114 Cand1 2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829 cullin associated and neddylation disassociated 1 0.025641 0.535032 -4.581594 chr12-326 chr12 72634505 72634661 + 35.6 NA Intergenic RLTR25A|LTR|ERVK -115071 NM_026102 208846 Mm.474935 NM_026102 ENSMUSG00000034574 Daam1 1700066F09Rik|2310028E21Rik|AI503486|E130308H01|mKIAA0666 dishevelled associated activator of morphogenesis 1 0.019231 0.407643 -3.836995 chr10-279 chr10 68502683 68502839 + 35.6 NA Intergenic Intergenic -105252 NM_001081347 69288 Mm.26659 NM_001081347 ENSMUSG00000019944 Rhobtb1 1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930|MGC107538 Rho-related BTB domain containing 1 0.032051 0.414013 -1.533436 chr17-273 chr17 71488406 71488562 + 35.6 NA intron (NR_015549, intron 3 of 6) intron (NR_015549, intron 3 of 6) 14654 NR_027953 68789 Mm.75202 XM_001480625 Trmt61b 1110039F03Rik|623451|Gm6431 tRNA methyltransferase 61 homolog B (S. cerevisiae) 0.006410 0.496815 4.141424 chr7-247 chr7 72865960 72866116 + 35.6 NA Intergenic Intergenic -382994 NM_177740 244058 Mm.333943 NM_177740 ENSMUSG00000070509 Rgma BC059072|C230063O06|MGC38550|MGC69915 RGM domain family, member A 0.019231 0.439490 -4.395743 chr4-419 chr4 123154534 123154690 + 35.6 NA intron (NM_009600, intron 1 of 92) intron (NM_009600, intron 1 of 92) 32051 NM_009600 11426 Mm.477352 XM_001472676 ENSMUSG00000028649 Macf1 ABP620|Acf7|Aclp7|MACF|R74989|mACF7|mKIAA0465 microtubule-actin crosslinking factor 1 0.012821 0.445860 -3.719918 chr16-181 chr16 13145608 13145764 + 35.6 NA Intergenic Intergenic -24372 NM_001122667 239719 Mm.270643 NM_001122667 ENSMUSG00000009569 Mkl2 ENSMUSG00000075401|Gt4-1|KIAA1243|MGC41582|MRTF-B|Mrtfb|mKIAA1243 MKL/myocardin-like 2 0.012821 0.509554 -2.507710 chr11-413 chr11 88203311 88203467 + 35.6 NA intron (NM_054043, intron 9 of 13) intron (NM_054043, intron 9 of 13) 93152 NM_028859 74297 Mm.207320 XM_484061 ENSMUSG00000034031 1700106J16Rik - RIKEN cDNA 1700106J16 gene 0.025641 0.585987 -3.798459 chr12-283 chr12 4089183 4089339 + 35.6 NA intron (NM_153082, intron 3 of 6) intron (NM_153082, intron 3 of 6) 6800 NM_153082 217378 Mm.271656 NM_153082 ENSMUSG00000020657 Dnajc27 AI639580|C330021A05Rik|Rabj|Rbj DnaJ (Hsp40) homolog, subfamily C, member 27 0.019231 0.528662 3.752772 chr2-356 chr2 27035934 27036090 + 35.6 NA intron (NM_138665, intron 16 of 20) intron (NM_138665, intron 16 of 20) 32809 NM_138665 192166 Mm.278467 NM_138665 ENSMUSG00000009614 Sardh MGC6279 sarcosine dehydrogenase 0.006410 0.515924 -0.020992 chr2-355 chr2 26744129 26744285 + 35.6 NA intron (NM_011512, intron 5 of 5) intron (NM_011512, intron 5 of 5) -5668 NM_013677 20930 Mm.347512 NM_013677 ENSMUSG00000015790 Surf1 0610010F23Rik|Surf-1 surfeit gene 1 0.012821 0.452229 3.723897 chr16-209 chr16 78355500 78355656 + 35.6 NA Intergenic Lx8|LINE|L1 -96201 NM_009770 12228 Mm.392910 NM_009770 ENSMUSG00000022863 Btg3 ANA|tob5 B-cell translocation gene 3 0.006410 0.445860 -1.610766 chr9-367 chr9 59933279 59933435 + 35.6 NA intron (NM_001040426, intron 7 of 17) intron (NM_001040426, intron 7 of 17) 5869 NM_172444 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.025641 0.452229 -2.629466 chr17-238 chr17 27611628 27611784 + 35.6 NA intron (NM_001080769, intron 9 of 20) intron (NM_001080769, intron 9 of 20) 23607 NM_026836 68776 Mm.267998 NM_026836 ENSMUSG00000024218 Taf11 1110038O14Rik|28kDa|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor 0.032051 0.535032 0.764407 chr4-397 chr4 99612285 99612441 + 35.6 NA intron (NM_013845, intron 1 of 8) intron (NM_013845, intron 1 of 8) 18641 NM_013845 26563 Mm.480366 NM_013845 ENSMUSG00000035305 Ror1 2810404D04Rik|Ntrkr1|mRor1 receptor tyrosine kinase-like orphan receptor 1 0.000000 0.464968 -3.473837 chr5-477 chr5 92704876 92705032 + 35.6 NA Intergenic Intergenic 112055 NM_145562 231440 Mm.5002 NM_145562 ENSMUSG00000034981 Parm1 2210012L08Rik|9130213B05Rik|W91666 prostate androgen-regulated mucin-like protein 1 0.006410 0.554140 -0.521984 chr10-257 chr10 13677208 13677364 + 35.6 NA intron (NM_010437, intron 1 of 8) intron (NM_010437, intron 1 of 8) 20710 NM_010437 15273 Mm.42157 NM_010437 ENSMUSG00000015501 Hivep2 MIBP1|Schnurri-2|Shn-2 human immunodeficiency virus type I enhancer binding protein 2 0.006410 0.433121 -0.109510 chr4-366 chr4 55562557 55562713 + 35.6 NA Intergenic Intergenic -9060 NM_010637 16600 Mm.4325 NM_010637 ENSMUSG00000003032 Klf4 EZF|Gklf|Zie Kruppel-like factor 4 (gut) 0.000000 0.464968 3.069799 chr9-351 chr9 46749511 46749667 + 35.6 NA Intergenic Intergenic 84992 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.012821 0.554140 -3.008376 chr13-208 chr13 29558507 29558663 + 35.6 NA intron (NM_144536, intron 10 of 15) intron (NM_144536, intron 10 of 15) 304468 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.000000 0.407643 -1.328220 chr5-520 chr5 132623558 132623714 + 35.6 NA intron (NM_177047, intron 1 of 18) intron (NM_177047, intron 1 of 18) 203410 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.019231 0.445860 1.758686 chr13-214 chr13 38170149 38170305 + 35.6 NA intron (NM_023842, intron 1 of 23) intron (NM_023842, intron 1 of 23) 11468 NM_023842 109620 Mm.355327 XM_001481272 ENSMUSG00000054889 Dsp 2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP desmoplakin 0.032051 0.528662 -4.506124 chr11-441 chr11 109548995 109549151 + 35.6 NA Intergenic Intergenic -10727 NM_153782 208659 Mm.208662 NM_153782 ENSMUSG00000020614 Fam20a AI606893 family with sequence similarity 20, member A 0.019231 0.394904 1.442035 chr16-200 chr16 36444565 36444721 + 35.6 NA intron (NM_013803, intron 1 of 6) intron (NM_013803, intron 1 of 6) 36730 NM_013803 12374 Mm.103619 NM_013803 ENSMUSG00000051980 Casr CaR|Gprc2a calcium-sensing receptor 0.000000 0.363057 -0.981627 chr14-121 chr14 58869755 58869911 + 35.6 NA intron (NM_015803, intron 24 of 35) intron (NM_015803, intron 24 of 35) 171111 NM_015803 50769 Mm.319599 NM_015803 ENSMUSG00000021983 Atp8a2 AI415030|Atpc1b|Ib ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 0.019231 0.439490 -2.362709 chr11-430 chr11 101474618 101474774 + 35.6 NA Intergenic Intergenic -6934 NM_025404 80981 Mm.477253 XM_001471772 ENSMUSG00000034936 Arl4d 1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5|MGC28743 ADP-ribosylation factor-like 4D 0.012821 0.477707 4.865302 chr1-574 chr1 191874557 191874713 + 35.6 NA Intergenic Intergenic -3167 NM_008937 19130 Mm.392678 NM_008937 ENSMUSG00000010175 Prox1 A230003G05Rik prospero-related homeobox 1 0.032051 0.592357 -5.930758 chr5-426 chr5 3986599 3986755 + 35.6 NA intron (NM_194462, intron 13 of 47) intron (NM_194462, intron 13 of 47) 52486 NM_194462 100986 Mm.46044 NM_194462 ENSMUSG00000040407 Akap9 5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|PRKA9|mKIAA0803 A kinase (PRKA) anchor protein (yotiao) 9 0.006410 0.636943 -10.033636 chr9-363 chr9 54435106 54435262 + 35.6 NA intron (NM_053178, intron 2 of 13) intron (NM_053178, intron 2 of 13) 24838 NM_053178 94180 Mm.20592 NM_053178 ENSMUSG00000032281 Acsbg1 BG1|Bgm|E230019G03Rik|Lpd|R75185|mKIAA0631 acyl-CoA synthetase bubblegum family member 1 0.000000 0.471338 -4.924500 chr5-464 chr5 74996054 74996210 + 35.6 NA Intergenic Intergenic -11532 NM_001159577 16924 Mm.440403 NM_001159577 ENSMUSG00000029228 Lnx1 Lnx ligand of numb-protein X 1 0.012821 0.433121 1.669616 chr11-439 chr11 109136198 109136354 + 35.6 NA Intergenic B4|SINE|B4 -22005 NM_001165934 19739 Mm.38548 NM_001165934 ENSMUSG00000020599 Rgs9 MGC150267|MGC150268|RGS9-1|Rgs9-2 regulator of G-protein signaling 9 0.006410 0.509554 0.095585 chr13-232 chr13 59869011 59869167 + 35.6 NA Intergenic Intergenic -36319 NM_153538 214290 Mm.233082 NM_153538 ENSMUSG00000035248 Zcchc6 6030448M23Rik|AA420405|MGC38585 zinc finger, CCHC domain containing 6 0.006410 0.414013 -2.271471 chr10-299 chr10 91011353 91011509 + 35.6 NA Intergenic Intergenic -410050 NM_001080130 21917 Mm.439157 NM_001080129 ENSMUSG00000019961 Tmpo 5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP thymopoietin 0.025641 0.401274 -4.752925 chr4-372 chr4 62247342 62247498 + 35.6 NA Intergenic Intergenic 141388 NM_134257 50780 Mm.286753 NM_001081650 ENSMUSG00000059810 Rgs3 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S regulator of G-protein signaling 3 0.025641 0.496815 -2.628018 chr4-379 chr4 81601011 81601167 + 35.6 NA Intergenic L2|LINE|L2 375450 NM_001113210 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.006410 0.324841 -1.259827 chr16-215 chr16 90157835 90157991 + 35.6 NA intron (NM_178923, intron 1 of 19) intron (NM_178923, intron 1 of 19) 15371 NM_178923 224432 Mm.439811 NM_178923 ENSMUSG00000022983 Srsf15 AA517739|Sfrs15|Sra4 serine/arginine-rich splicing factor 15 0.012821 0.439490 -2.473948 chr17-244 chr17 33434791 33434947 + 35.6 NA intron (NM_023202, intron 2 of 3) intron (NM_023202, intron 2 of 3) 4285 NM_023202 66416 Mm.29513 NM_023202 ENSMUSG00000041881 Ndufa7 14.5kDa|2400007M02Rik NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a) 0.006410 0.414013 -2.862083 chr12-382 chr12 112344762 112344918 + 35.6 NA intron (NM_011625, intron 1 of 16) intron (NM_011625, intron 1 of 16) 11023 NM_011625 21981 Mm.313076 NM_011625 ENSMUSG00000021285 Ppp1r13b AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85 protein phosphatase 1, regulatory (inhibitor) subunit 13B 0.012821 0.477707 -1.124524 chr4-338 chr4 4715198 4715354 + 35.6 NA intron (NM_177730, intron 1 of 4) intron (NM_177730, intron 1 of 4) 5177 NM_177730 242291 Mm.369779 NM_177730 ENSMUSG00000066324 Impad1 1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP inositol monophosphatase domain containing 1 0.012821 0.426752 -1.065579 chr7-259 chr7 96289775 96289931 + 35.6 NA intron (NM_011858, intron 2 of 32) intron (NM_011858, intron 2 of 32) 165238 NR_030489 735284 NR_030489 Mir708 Mirn708|mmu-mir-708 microRNA 708 0.012821 0.394904 -2.578767 chr11-452 chr11 116346461 116346617 + 35.6 NA Intergenic Intergenic -1461 NM_001172475 20698 Mm.20944 NM_001172472 ENSMUSG00000061878 Sphk1 1110006G24Rik|Sk1|Spk1 sphingosine kinase 1 0.006410 0.547771 -2.556221 chr9-371 chr9 63113341 63113497 + 35.6 NA intron (NM_011840, intron 8 of 21) intron (NM_011840, intron 8 of 21) 62439 NM_011840 23938 Mm.325746 NM_011840 ENSMUSG00000058444 Map2k5 AI324775|AI428457|MEK5|Mapkk5|Prkmk5 mitogen-activated protein kinase kinase 5 0.000000 0.503185 -0.204741 chr6-302 chr6 114386765 114386921 + 35.6 NA intron (NM_008285, intron 2 of 2) intron (NM_008285, intron 2 of 2) 23313 NM_008285 15465 Mm.333327 NM_008285 ENSMUSG00000053004 Hrh1 Bphs histamine receptor H1 0.000000 0.471338 2.292780 chr13-240 chr13 89486455 89486611 + 35.6 NA intron (NM_001037987, intron 3 of 10) intron (NM_001037987, intron 3 of 10) 190858 NM_001037987 13612 Mm.125580 NM_001037987 ENSMUSG00000034488 Edil3 Del-1|Del1 EGF-like repeats and discoidin I-like domains 3 0.000000 0.350318 1.023659 chr11-414 chr11 90185771 90185927 + 35.6 NA intron (NM_172563, intron 2 of 3) intron (NM_172563, intron 2 of 3) 21158 NM_172563 217082 Mm.158903 NM_172563 ENSMUSG00000003949 Hlf E230015K02Rik hepatic leukemia factor 0.019231 0.503185 -2.807525 chr18-200 chr18 75737958 75738114 + 35.6 NA intron (NM_201354, intron 3 of 11) intron (NM_201354, intron 3 of 11) 85025 NM_201354 269037 Mm.36745 NM_201354 ENSMUSG00000052928 Gm672 Ctif|MGC67202 predicted gene 672 0.025641 0.490446 -5.535910 chr15-204 chr15 79986683 79986839 + 35.6 NA intron (NM_025609, intron 10 of 10) intron (NM_025609, intron 10 of 10) -14214 NM_010795 17309 Mm.299693 XM_001473411 ENSMUSG00000042428 Mgat3 1110038J12Rik|AI848272|GnT-III mannoside acetylglucosaminyltransferase 3 0.025641 0.579618 -4.337399 chr9-331 chr9 20135450 20135606 + 35.6 NA promoter-TSS (NM_001004190) promoter-TSS (NM_001004190) 32 NM_001004190 434377 Mm.379669 NM_001004190 ENSMUSG00000045519 Zfp560 2310030G09Rik|Znf560 zinc finger protein 560 0.115385 0.687898 -4.721062 chr7-293 chr7 139603916 139604072 + 35.6 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -81499 NM_177469 52389 Mm.39863 NM_177469 ENSMUSG00000025475 Gpr123 2900059M17Rik|D7Ertd680e G protein-coupled receptor 123 0.006410 0.452229 -3.567814 chr8-321 chr8 129994134 129994290 + 35.6 NA intron (NM_001122850, intron 1 of 15) intron (NM_001122850, intron 1 of 15) 44067 NM_001122850 93742 Mm.299254 NM_001013580 ENSMUSG00000025812 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) 0.006410 0.464968 -3.541013 chr5-434 chr5 23373405 23373561 + 35.6 NA Intergenic Intergenic 11186 NR_028536 100217436 NR_028536 Snord93 MBII-336 small nucleolar RNA, C/D box 93 0.006410 0.382166 -1.620129 chr3-333 chr3 123050916 123051072 + 35.6 NA Intergenic Intergenic -23985 NM_021503 59006 Mm.141157 NM_021503 ENSMUSG00000028116 Myoz2 1110012I24Rik|Fatz-2|Myozl2 myozenin 2 0.000000 0.433121 -5.323486 chr8-278 chr8 73490968 73491124 + 35.6 NA intron (NM_007924, intron 1 of 11) intron (NM_007924, intron 1 of 11) 22383 NM_007924 13716 Mm.271973 NM_007924 ENSMUSG00000070002 Ell Ell1|Men elongation factor RNA polymerase II 0.019231 0.554140 1.418855 chr16-220 chr16 93749386 93749542 + 35.6 NA intron (NM_001045529, intron 10 of 16) intron (NM_001045529, intron 10 of 16) -22976 NM_028083 110749 Mm.274222 NM_028083 ENSMUSG00000022945 Chaf1b 2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7 chromatin assembly factor 1, subunit B (p60) 0.000000 0.388535 1.951136 chr3-323 chr3 107645866 107646022 + 35.6 NA 5' UTR (NM_172271, exon 1 of 12) 5' UTR (NM_172271, exon 1 of 12) 130 NM_172271 229706 Mm.212867 NM_172271 ENSMUSG00000027894 Slc6a17 AW490886|D130012J15Rik|Ntt4 solute carrier family 6 (neurotransmitter transporter), member 17 0.153846 0.777070 -9.772429 chr4-339 chr4 6705486 6705642 + 35.6 NA intron (NM_145711, intron 3 of 8) intron (NM_145711, intron 3 of 8) 212306 NM_145711 252838 Mm.435828 NM_145711 ENSMUSG00000041272 Tox 1700007F02Rik|KIAA0808 thymocyte selection-associated high mobility group box 0.006410 0.401274 6.960730 chr5-450 chr5 40092786 40092942 + 35.6 NA Intergenic Intergenic -159984 NM_010474 15476 Mm.12559 NM_010474 ENSMUSG00000051022 Hs3st1 3-Ost|D5Wsu110e|Hsg3ost heparan sulfate (glucosamine) 3-O-sulfotransferase 1 0.006410 0.433121 1.639277 chr17-228 chr17 14798631 14798787 + 35.6 NA Intergenic Intergenic 40688 NM_001034891 381062 Mm.458576 NM_001034891 ENSMUSG00000036552 2210404J11Rik 2410011O22Rik|AI448938 RIKEN cDNA 2210404J11 gene 0.006410 0.579618 0.694159 chr8-267 chr8 46567407 46567563 + 35.6 NA promoter-TSS (NM_008639) promoter-TSS (NM_008639) -541 NM_008639 17773 Mm.5133 NM_008639 ENSMUSG00000054764 Mtnr1a MGC151277|MR|MelR melatonin receptor 1A 0.019231 0.324841 -0.216144 chr7-250 chr7 79182155 79182311 + 35.6 NA intron (NM_018811, intron 3 of 10) intron (NM_018811, intron 3 of 10) 35455 NM_018811 54608 Mm.365490 NM_018811 ENSMUSG00000039202 Abhd2 2210009N18Rik|LABH2|Labh-2|MGC107122 abhydrolase domain containing 2 0.012821 0.426752 3.725184 chr5-527 chr5 136995465 136995621 + 35.6 NA Intergenic Intergenic 16740 NM_001085387 59310 Mm.5178 NM_001085387 ENSMUSG00000005474 Myl10 1700027I08Rik|Mylc2pl|PLRLC|PLRLC-A|PLRLC-B|PLRLC-C myosin, light chain 10, regulatory 0.012821 0.477707 -2.488755 chr6-311 chr6 122776334 122776490 + 35.6 NA Intergenic Intergenic -9390 NM_021899 60611 Mm.87142 NM_021899 ENSMUSG00000003154 Foxj2 Fhx forkhead box J2 0.038462 0.515924 -5.120075 chr18-209 chr18 82517648 82517804 + 35.6 NA Intergenic RLTR25B|LTR|ERVK 23479 NM_008082 14427 Mm.6219 NM_008082 ENSMUSG00000024553 Galr1 Galnr1 galanin receptor 1 0.012821 0.477707 1.096717 chr3-305 chr3 88677128 88677284 + 35.6 NA Intergenic Intergenic 11609 NM_025448 66256 Mm.7091 NM_025448 ENSMUSG00000041355 Ssr2 1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta signal sequence receptor, beta 0.006410 0.490446 -3.105262 chr17-278 chr17 80391467 80391623 + 35.6 NA Intergenic Intergenic -2766 NM_009231 20662 Mm.434583 NM_009231 ENSMUSG00000024241 Sos1 4430401P03Rik|9630010N06|AI449023 son of sevenless homolog 1 (Drosophila) 0.057692 0.630573 -3.473837 chr3-269 chr3 20122693 20122849 + 35.6 NA Intergenic Intergenic -26433 NM_001042611 12870 Mm.13787 NM_001042611 ENSMUSG00000003617 Cp D3Ertd555e ceruloplasmin 0.000000 0.350318 -2.101136 chr11-403 chr11 81115626 81115782 + 35.6 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) -146606 NM_007384 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.025641 0.528662 4.699008 chr4-342 chr4 9022676 9022832 + 35.6 NA Intergenic Intergenic -173709 NM_028940 74438 Mm.477282 NM_028940 ENSMUSG00000041216 Clvs1 4933402J24Rik|Clvl1|Rlbp1l1 clavesin 1 0.012821 0.433121 -4.609970 chr1-482 chr1 52058442 52058598 + 35.6 NA Intergenic CpG -5462 NM_009283 20846 Mm.277406 NM_009283 ENSMUSG00000026104 Stat1 2010005J02Rik|AA408197 signal transducer and activator of transcription 1 0.076923 0.630573 -3.612518 chr9-341 chr9 36666749 36666905 + 35.6 NA intron (NM_001029838, intron 7 of 12) intron (NM_001029838, intron 7 of 12) 73498 NM_183171 235180 Mm.5264 NM_183171 ENSMUSG00000032118 Fez1 MGC19293|UNC-76|UNC76 fasciculation and elongation protein zeta 1 (zygin I) 0.019231 0.585987 3.463774 chr2-373 chr2 52746024 52746180 + 35.6 NA intron (NM_172409, intron 1 of 26) intron (NM_172409, intron 1 of 26) 66226 NM_172409 71409 Mm.394427 NM_172409 ENSMUSG00000036053 Fmnl2 5430425K04Rik|Man formin-like 2 0.000000 0.407643 5.365886 chr3-294 chr3 69387275 69387431 + 35.6 NA Intergenic L1_Mus3|LINE|L1 -17493 NM_178726 242083 Mm.40577 NM_178726 ENSMUSG00000027784 Ppm1l 3222401G13|5930404J21Rik|AI481720|AW045850|KIAA4175|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175 protein phosphatase 1 (formerly 2C)-like 0.006410 0.401274 -2.697426 chr10-318 chr10 124484746 124484902 + 35.6 NA Intergenic Intergenic 246771 NM_011391 20503 Mm.29161 NM_011391 ENSMUSG00000020102 Slc16a7 4921534N07Rik|MGC143699|MGC143700|MGC143718|Mct2 solute carrier family 16 (monocarboxylic acid transporters), member 7 0.000000 0.356688 -0.288370 chr11-399 chr11 76640500 76640656 + 35.6 NA intron (NM_007754, intron 2 of 20) intron (NM_007754, intron 2 of 20) 22625 NM_007754 12874 Mm.276736 NM_007754 ENSMUSG00000020841 Cpd AA960140|AW322530|D830034L15Rik carboxypeptidase D 0.006410 0.369427 2.062098 chr16-227 chr16 97976957 97977113 + 35.6 NA intron (NM_144789, intron 6 of 23) intron (NM_144789, intron 6 of 23) 29108 NM_144789 114604 Mm.328741 XM_622716 ENSMUSG00000014039 Prdm15 C21orf83|E130018M06Rik|ORF62|Zfp298 PR domain containing 15 0.006410 0.420382 0.841340 chr13-211 chr13 35477010 35477166 + 35.6 NA Intergenic Intergenic -190238 NM_009881 12593 Mm.29002 NM_001123386 ENSMUSG00000059288 Cdyl AI325931 chromodomain protein, Y chromosome-like 0.025641 0.503185 -5.992284 chr5-463 chr5 73134974 73135130 + 35.6 NA intron (NM_001113461, intron 1 of 17) intron (NM_001113461, intron 1 of 17) 12531 NM_001113461 21682 Mm.319581 NM_001113460 ENSMUSG00000029217 Tec - tec protein tyrosine kinase 0.012821 0.541401 -6.997239 chr17-270 chr17 64578352 64578508 + 35.6 NA intron (NM_008549, intron 12 of 21) intron (NM_008549, intron 12 of 21) 80491 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.012821 0.458599 -8.297097 chr7-279 chr7 121589117 121589273 + 35.6 NA Intergenic Intergenic 63541 NM_011326 20278 Mm.35247 NM_011326 ENSMUSG00000000216 Scnn1g [g]ENaC sodium channel, nonvoltage-gated 1 gamma 0.012821 0.401274 -5.964720 chr10-287 chr10 74972749 74972905 + 35.6 NA intron (NM_026095, intron 2 of 3) intron (NM_026095, intron 2 of 3) 11070 NM_026095 67332 Mm.392843 NM_026095 ENSMUSG00000020180 Snrpd3 1700043E15Rik|2310009E13Rik|AW046420|SMD3 small nuclear ribonucleoprotein D3 0.006410 0.401274 -5.023257 chr1-517 chr1 90935685 90935841 + 35.6 NA intron (NM_133816, intron 1 of 5) intron (NM_133816, intron 1 of 5) 34131 NM_133816 98402 Mm.170983 NM_133816 ENSMUSG00000036206 Sh3bp4 AI594717|AW227605|BOG25 SH3-domain binding protein 4 0.019231 0.611465 -1.184763 chr1-474 chr1 37816961 37817117 + 35.6 NA intron (NM_001037918, intron 1 of 1) intron (NM_001037918, intron 1 of 1) 288 NM_001037918 623661 Mm.389100 NM_001037918 ENSMUSG00000037216 Lipt1 EG623661|MGC28431 lipoyltransferase 1 0.051282 0.490446 6.049659 chr6-284 chr6 93213282 93213438 + 35.6 NA Intergenic Intergenic 307275 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.006410 0.484076 1.344104 chr12-332 chr12 75012920 75013076 + 35.6 NA intron (NM_172804, intron 1 of 6) intron (NM_172804, intron 1 of 6) 96400 NM_172804 238266 Mm.398210 NM_172804 ENSMUSG00000044912 Syt16 6430703N11|Strep14|Syt14l|syt14r synaptotagmin XVI 0.019231 0.515924 -3.719918 chr2-443 chr2 162980359 162980515 + 35.6 NA intron (NM_001098799, intron 3 of 8) intron (NM_001098799, intron 3 of 8) 63543 NM_001098799 269389 Mm.207709 XM_001476490 ENSMUSG00000074607 Tox2 AI851523|AV026525|BI987407|Gcx1|RxHMG1 TOX high mobility group box family member 2 0.032051 0.617834 -6.827901 chr14-107 chr14 20329355 20329511 + 35.6 NA intron (NM_017479, intron 2 of 16) intron (NM_017479, intron 2 of 16) 41028 NM_017479 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Myst4 AI507552|B130044K16Rik|KAT6B|Morf|mKIAA0383|qkf|querkopf MYST histone acetyltransferase monocytic leukemia 4 0.012821 0.445860 -1.204294 chr15-210 chr15 85873504 85873660 + 35.6 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -11890 NM_172611 223752 Mm.24442 NM_172611 ENSMUSG00000035900 Gramd4 9930016O13 GRAM domain containing 4 0.000000 0.407643 -3.006063 chr5-548 chr5 146525558 146525714 + 35.6 NA promoter-TSS (NM_028774) promoter-TSS (NM_028774) 35 NM_028774 74132 Mm.26696 NM_028774 ENSMUSG00000029634 Rnf6 1200013I08Rik|5730419H05Rik|AA537053 ring finger protein (C3H2C3 type) 6 0.128205 0.675159 -4.576381 chr15-170 chr15 3201039 3201195 + 35.6 NA Intergenic Intergenic -19649 NM_001042613 20363 Mm.392203 NM_001042613 ENSMUSG00000064373 Sepp1 AU018766|D15Ucla1|Se-P|selp selenoprotein P, plasma, 1 0.006410 0.369427 2.416408 chr11-396 chr11 68809457 68809613 + 35.6 NA exon (NM_001159519, exon 15 of 28) exon (NM_001159519, exon 15 of 28) 15120 NM_001159519 237823 Mm.340288 XM_111232 ENSMUSG00000020899 Pfas 4432409B16Rik|FGAMS|FGARAT|Gm18|PURL phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) 0.025641 0.560510 0.232413 chr5-535 chr5 140584302 140584458 + 35.6 NA promoter-TSS (NM_008637) promoter-TSS (NM_008637) -8 NM_026510 68017 Mm.38894 NM_026510 ENSMUSG00000029557 Ftsj2 2310037B18Rik FtsJ homolog 2 (E. coli) 0.102564 0.656051 -4.190447 chr18-181 chr18 46506608 46506764 + 35.6 NA Intergenic Intergenic -69427 NM_001160399 240261 Mm.478771 XM_140320 ENSMUSG00000071855 Ccdc112 8430438M01Rik|AW108467 coiled-coil domain containing 112 0.025641 0.528662 -2.001954 chr11-366 chr11 7648031 7648187 + 35.6 NA Intergenic Intergenic -534183 NM_008343 16009 Mm.29254 NM_008343 ENSMUSG00000020427 Igfbp3 AI649005|IGFBP-3|IGgfbp3 insulin-like growth factor binding protein 3 0.000000 0.401274 -3.769584 chr10-269 chr10 40441454 40441610 + 35.6 NA intron (NM_177793, intron 4 of 4) intron (NM_177793, intron 4 of 4) 69794 NM_177793 327747 Mm.80407 NM_177793 ENSMUSG00000045555 9030224M15Rik - RIKEN cDNA 9030224M15 gene 0.006410 0.401274 4.042667 chr5-518 chr5 132106227 132106383 + 35.6 NA intron (NM_177047, intron 4 of 18) intron (NM_177047, intron 4 of 18) -514080 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.012821 0.458599 -3.083216 chr14-134 chr14 116622520 116622676 + 35.6 NA intron (NM_001079844, intron 4 of 9) intron (NM_001079844, intron 4 of 9) 311994 NM_010024 13190 Mm.19987 NM_010024 ENSMUSG00000022129 Dct DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt dopachrome tautomerase 0.006410 0.458599 -5.869539 chr11-454 chr11 116906197 116906353 + 35.6 NA Intergenic Intergenic 13403 NR_027059 76972 Mm.309167 NR_027059 2810008D09Rik - RIKEN cDNA 2810008D09 gene 0.012821 0.535032 -0.699577 chr13-219 chr13 45654893 45655049 + 35.6 NA intron (NM_009124, intron 6 of 7) intron (NM_009124, intron 6 of 7) 136531 NM_025508 66355 Mm.290802 NM_025508 ENSMUSG00000000253 Gmpr 2310004P21Rik|AV028449 guanosine monophosphate reductase 0.006410 0.426752 1.779523 chr3-313 chr3 97953491 97953647 + 35.6 NA 5' UTR (NM_177145, exon 1 of 4) 5' UTR (NM_177145, exon 1 of 4) 148 NM_177145 83679 Mm.129840 NM_001039376 ENSMUSG00000038170 Pde4dip 4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|KIAA0477|MGC176146|Usmg4|mKIAA0454 phosphodiesterase 4D interacting protein (myomegalin) 0.096154 0.668790 3.119964 chr14-100 chr14 12864741 12864897 + 35.6 NA intron (NM_139227, intron 4 of 11) intron (NM_139227, intron 4 of 11) 49352 NM_025550 66413 Mm.27591 NM_025550 ENSMUSG00000021737 Psmd6 2400006A19Rik proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 0.006410 0.382166 4.832441 chr4-354 chr4 20881354 20881510 + 35.6 NA Intergenic Lx6|LINE|L1 -11929 NM_172987 269513 Mm.317473 NM_172987 ENSMUSG00000055761 Nkain3 C530048M05|E130310K16Rik Na+/K+ transporting ATPase interacting 3 0.006410 0.401274 2.781315 chr19-125 chr19 45202440 45202596 + 35.6 NA Intergenic L2|LINE|L2 -1507 NM_021901 21908 Mm.391203 NM_021901 ENSMUSG00000025215 Tlx1 Hox-11|Hox11 T-cell leukemia, homeobox 1 0.000000 0.375796 -2.938450 chr6-253 chr6 40277226 40277382 + 35.6 NA intron (NM_023538, intron 3 of 15) intron (NM_023538, intron 3 of 15) 22220 NM_023538 69923 Mm.32840 NM_023538 ENSMUSG00000029916 Agk 2610037M15Rik|6720408I04Rik|AI465370|Mulk acylglycerol kinase 0.025641 0.484076 -6.135061 chr9-337 chr9 30984811 30984967 + 35.6 NA Intergenic Intergenic -23509 NM_001102456 11804 Mm.19133 NM_001102455 ENSMUSG00000031996 Aplp2 AI790698 amyloid beta (A4) precursor-like protein 2 0.019231 0.471338 -4.782125 chr1-563 chr1 176496201 176496357 + 35.6 NA intron (NM_019445, intron 7 of 17) intron (NM_019445, intron 7 of 17) 157780 NM_019445 54418 Mm.330620 NM_019445 ENSMUSG00000028354 Fmn2 AU024104 formin 2 0.019231 0.452229 -0.247780 chr11-412 chr11 87975164 87975320 + 35.6 NA intron (NM_198013, intron 1 of 10) intron (NM_198013, intron 1 of 10) -10517 NM_001172099 103841 Mm.374846 NM_001172099 ENSMUSG00000018378 Cuedc1 AI841487|C330016O16Rik CUE domain containing 1 0.019231 0.611465 -6.404178 chr6-325 chr6 147433560 147433716 + 35.6 NA intron (NM_025911, intron 1 of 12) intron (NM_025911, intron 1 of 12) 598 NM_025911 67015 Mm.209774 NM_025911 ENSMUSG00000030301 Ccdc91 1700086G08Rik|1810060J02Rik|AU045683|AW555238 coiled-coil domain containing 91 0.083333 0.662420 -4.218141 chr16-180 chr16 9438082 9438238 + 35.6 NA Intergenic MTD|LTR|MaLR 467951 NM_008170 14811 Mm.2953 NM_008170 ENSMUSG00000059003 Grin2a NMDAR2A|NR2A glutamate receptor, ionotropic, NMDA2A (epsilon 1) 0.000000 0.375796 -4.500543 chr9-347 chr9 45117108 45117264 + 35.6 NA Intergenic MTEb|LTR|MaLR -3993 NM_022004 59095 Mm.208287 NM_022004 ENSMUSG00000066705 Fxyd6 0610030I18Rik|Php FXYD domain-containing ion transport regulator 6 0.006410 0.484076 -5.535910 chr17-222 chr17 8694634 8694790 + 35.6 NA intron (NM_011866, intron 1 of 21) intron (NM_011866, intron 1 of 21) 54794 NM_011866 23984 Mm.87161 NM_011866 ENSMUSG00000023868 Pde10a - phosphodiesterase 10A 0.032051 0.547771 -2.375568 chr10-296 chr10 86995611 86995767 + 35.6 NA intron (NM_008777, intron 5 of 12) intron (NM_008777, intron 5 of 12) 44096 NM_008777 18478 Mm.263539 NM_008777 ENSMUSG00000020051 Pah AW106920 phenylalanine hydroxylase 0.006410 0.535032 -2.176225 chr11-371 chr11 22098540 22098696 + 35.6 NA intron (NM_153078, intron 4 of 23) intron (NM_153078, intron 4 of 23) 87223 NM_153078 216565 Mm.281732 NM_153078 ENSMUSG00000042302 Ehbp1 AF424697|Flj21950|NACSIN EH domain binding protein 1 0.019231 0.343949 -5.632710 chr19-118 chr19 38297344 38297500 + 35.6 NA Intergenic Intergenic -8146 NM_001081075 70567 Mm.30607 NM_001081075 ENSMUSG00000054237 5730455O13Rik AI448293|Fra10ac1 RIKEN cDNA 5730455O13 gene 0.019231 0.522293 -5.548046 chr5-483 chr5 101995403 101995559 + 35.6 NA Intergenic RMER6D|LTR|ERVK -9950 NM_173370 74596 Mm.46764 NM_173370 ENSMUSG00000029330 Cds1 4833409J18Rik|AI314024|AW125888 CDP-diacylglycerol synthase 1 0.012821 0.464968 -6.312778 chr6-308 chr6 119298161 119298317 + 35.6 NA intron (NM_001033382, intron 26 of 37) intron (NM_001033382, intron 26 of 37) -1854 NM_172492 211187 Mm.121498 NM_001172207 ENSMUSG00000055003 Lrtm2 A230084J22|AI841794 leucine-rich repeats and transmembrane domains 2 0.000000 0.515924 -3.853605 chr3-343 chr3 138774858 138775014 + 35.6 NA intron (NM_019571, intron 1 of 7) intron (NM_019571, intron 1 of 7) 95355 NM_019571 56224 Mm.31927 NM_019571 ENSMUSG00000028152 Tspan5 2810455A09Rik|4930505M03Rik|AU024142|NET-4|Tm4sf9 tetraspanin 5 0.032051 0.528662 1.324461 chr8-270 chr8 55009709 55009865 + 35.6 NA promoter-TSS (NM_001005847) promoter-TSS (NM_001005847) -636 NM_001005847 11593 Mm.334535 NM_001005847 ENSMUSG00000031521 Aga AW060726 aspartylglucosaminidase 0.012821 0.439490 3.557602 chr10-261 chr10 19321301 19321457 + 35.6 NA intron (NM_178258, intron 4 of 4) intron (NM_178258, intron 4 of 4) 9936 NM_178258 237310 Mm.331979 NM_178258 ENSMUSG00000039760 Il22ra2 CRF2-10|CRF2-s1|CRF2X|Il-22bp interleukin 22 receptor, alpha 2 0.006410 0.407643 2.808138 chr5-465 chr5 75766146 75766302 + 35.6 NA Intergenic Intergenic -90459 NM_001122733 16590 Mm.247073 NM_001122733 ENSMUSG00000005672 Kit Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT kit oncogene 0.006410 0.433121 -2.710991 chr12-299 chr12 36476525 36476681 + 35.6 NA Intergenic Intergenic -26587 NM_011783 23795 Mm.7244 NM_011783 ENSMUSG00000020581 Agr2 Agr2h|Gob-4|HAG-2|XAG-2|mAG-2 anterior gradient 2 (Xenopus laevis) 0.012821 0.528662 -5.970067 chr16-192 chr16 29499002 29499158 + 35.6 NA promoter-TSS (NM_133752) promoter-TSS (NM_133752) -8 NM_133752 74143 Mm.274285 NM_133752 ENSMUSG00000038084 Opa1 1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567 optic atrophy 1 homolog (human) 0.096154 0.656051 -4.200621 chr17-217 chr17 3038220 3038376 + 35.6 NA intron (NR_003519, intron 1 of 7) intron (NR_003519, intron 1 of 7) 2367 NR_003519 328734 Mm.335641 XM_001474127 Pisd-ps2 D030013I16Rik phosphatidylserine decarboxylase, pseudogene 2 0.000000 0.458599 -3.775120 chr11-377 chr11 36958777 36958933 + 35.6 NA Intergenic Intergenic -171189 NM_011856 23964 Mm.445432 NM_011856 ENSMUSG00000049336 Odz2 2610040L17Rik|9330187F13Rik|D3Bwg1534e|Odz3|Ten-m2|mKIAA1127 odd Oz/ten-m homolog 2 (Drosophila) 0.012821 0.407643 -3.673660 chr2-410 chr2 104291581 104291737 + 35.6 NA intron (NM_001145824, intron 1 of 15) intron (NM_001145824, intron 1 of 15) 3669 NM_010434 15259 Mm.257925 NM_001145824 ENSMUSG00000027177 Hipk3 DYRK6|FIST3|PKY homeodomain interacting protein kinase 3 0.012821 0.369427 1.561935 chr15-205 chr15 80300901 80301057 + 35.6 NA intron (NM_001163189, intron 5 of 5) intron (NM_001163189, intron 5 of 5) 86746 NM_001163189 383075 Mm.297626 XM_356844 Enthd1 Gm1242|Gm86|MGC189999 ENTH domain containing 1 0.006410 0.414013 -5.174945 chr12-374 chr12 107356982 107357138 + 35.6 NA Intergenic Intergenic -239686 NR_015512 71033 Mm.159404 NR_015512 4933406K04Rik 4930426M03Rik|4930485I22Rik|4933427G14Rik RIKEN cDNA 4933406K04 gene 0.032051 0.509554 -6.089091 chr16-201 chr16 37369178 37369334 + 35.6 NA Intergenic Intergenic -65059 NM_001114612 207227 Mm.403226 NM_001114611 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|MGC169507|tomosyn-2 syntaxin binding protein 5-like 0.006410 0.471338 -4.173822 chr12-345 chr12 86340821 86340977 + 35.6 NA Intergenic Intergenic -22104 NM_010234 14281 Mm.246513 NM_010234 ENSMUSG00000021250 Fos D12Rfj1|c-fos|cFos FBJ osteosarcoma oncogene 0.025641 0.592357 -2.400658 chr4-398 chr4 99847169 99847325 + 35.6 NA intron (NM_013845, intron 4 of 8) intron (NM_013845, intron 4 of 8) -129551 NM_001033773 381534 Mm.318133 NM_001033773 ENSMUSG00000069733 Ube2u - ubiquitin-conjugating enzyme E2U (putative) 0.025641 0.560510 -0.637261 chr18-210 chr18 82627276 82627432 + 35.6 NA intron (NM_001025245, intron 1 of 3) intron (NM_001025245, intron 1 of 3) 17804 NM_001025245 17196 Mm.454459 NM_001025245 ENSMUSG00000041607 Mbp C76307|Hmbpr|R75289|golli-mbp|mld|shi myelin basic protein 0.006410 0.452229 -1.124524 chr8-277 chr8 73452294 73452450 + 35.6 NA promoter-TSS (NM_029366) promoter-TSS (NM_029366) -203 NM_029366 75620 Mm.297372 XM_979156 2810422J05Rik 0610030B01Rik|C78305 RIKEN cDNA 2810422J05 gene 0.019231 0.401274 -5.280792 chr18-170 chr18 18746002 18746158 + 35.6 NA Intergenic L1M4|LINE|L1 -1367580 NR_033607 664619 Mm.250005 NR_033607 4921533I20Rik - Riken cDNA 4921533I20 gene 0.006410 0.420382 0.972706 chr6-267 chr6 68177007 68177163 + 35.6 NA Intergenic RLTR3_Mm-int|LTR|ERVK -681808 NR_003100 75070 Mm.463364 NR_003100 4930515G16Rik - myc induced nuclear antigen pseudogene 0.006410 0.356688 -1.427590 chr5-525 chr5 136247515 136247671 + 35.6 NA exon (NM_001160366, exon 9 of 11) exon (NM_001160366, exon 9 of 11) 11510 NM_001160366 109267 Mm.478574 XM_355648 ENSMUSG00000029699 Srcrb4d C330016E03Rik|S4D-SRCRB|SRCRB-S4D scavenger receptor cysteine rich domain containing, group B (4 domains) 0.064103 0.643312 1.827676 chr2-419 chr2 127560306 127560462 + 35.6 NA intron (NM_028765, intron 2 of 17) intron (NM_028765, intron 2 of 17) 14316 NM_028765 74121 Mm.244835 NM_028765 ENSMUSG00000027380 Acoxl 1200014P05Rik|AV025673 acyl-Coenzyme A oxidase-like 0.025641 0.458599 -1.687772 chr12-352 chr12 87863171 87863327 + 35.6 NA Intergenic Intergenic 14530 NM_001080943 238331 Mm.185890 NM_001080943 ENSMUSG00000048483 Zdhhc22 Gm262|MGC157624 zinc finger, DHHC-type containing 22 0.012821 0.445860 -3.973888 chr3-353 chr3 155435162 155435318 + 35.6 NA Intergenic Intergenic 406514 NM_028938 74435 Mm.195711 NM_028938 ENSMUSG00000028182 Lrriq3 4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44|MGC132959 leucine-rich repeats and IQ motif containing 3 0.000000 0.420382 -6.328817 chr5-534 chr5 140435124 140435280 + 35.6 NA intron (NM_010752, intron 11 of 17) intron (NM_010752, intron 11 of 17) 138824 NM_010752 17120 Mm.27250 NM_010752 ENSMUSG00000029554 Mad1l1 AI173502|AW550425|Mad1 mitotic arrest deficient 1-like 1 0.000000 0.445860 -3.701925 chr12-379 chr12 109407946 109408102 + 35.6 NA intron (NM_177602, intron 2 of 6) intron (NM_177602, intron 2 of 6) 65946 NM_177602 212198 Mm.342082 XM_001474974 Wdr25 B930090D16Rik WD repeat domain 25 0.012821 0.566879 2.535293 chr10-276 chr10 61884480 61884636 + 35.6 NA Intergenic RSINE1|SINE|B4 -2396 NM_133672 30930 Mm.473468 NM_001113355 ENSMUSG00000020078 Vps26a AA407240|HB58|Vps26 vacuolar protein sorting 26 homolog A (yeast) 0.000000 0.439490 2.813435 chr14-133 chr14 107750702 107750858 + 35.6 NA Intergenic Intergenic 46272 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 0.000000 0.401274 -3.347148 chr2-422 chr2 131448647 131448803 + 35.6 NA Intergenic L1_Mur3|LINE|L1 90372 NR_029381 414081 Mm.246905 NR_029381 5330413P13Rik - RIKEN cDNA 5330413P13 gene 0.000000 0.363057 -4.472955 chr10-256 chr10 6465063 6465219 + 35.6 NA intron (NM_001033253, intron 2 of 15) intron (NM_001033253, intron 2 of 15) 8733 NM_001033253 213783 Mm.150831 NM_001033253 ENSMUSG00000040624 Plekhg1 D10Ertd733e|Gm521|mKIAA1209 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 0.012821 0.522293 5.203840 chr16-176 chr16 5268389 5268545 + 35.6 NA Intergenic Intergenic -97190 NM_027446 70511 Mm.45780 NM_027446 ENSMUSG00000022544 Fam86 5730409G15Rik family with sequence similarity 86 0.012821 0.509554 -5.869515 chr5-449 chr5 39364708 39364864 + 35.6 NA Intergenic Intergenic -199844 NM_013748 27278 Mm.440845 NM_013748 ENSMUSG00000039315 Clnk MGC159342|MIST cytokine-dependent hematopoietic cell linker 0.019231 0.477707 -4.067976 chr1-478 chr1 43660757 43660913 + 35.6 NA Intergenic Intergenic -14312 NM_024283 78896 Mm.50109 NM_024283 ENSMUSG00000026051 1500015O10Rik Ecrg4 RIKEN cDNA 1500015O10 gene 0.012821 0.439490 -4.535473 chr12-300 chr12 36551387 36551543 + 35.6 NA intron (NM_025359, intron 1 of 5) intron (NM_025359, intron 1 of 5) 1279 NM_025359 66109 Mm.254663 NM_025359 ENSMUSG00000020577 Tspan13 1100001I23Rik|NET-6|Tm4sf13 tetraspanin 13 0.012821 0.484076 0.722906 chr12-289 chr12 25483072 25483228 + 35.6 NA intron (NM_001083341, intron 3 of 11) intron (NM_001083341, intron 3 of 11) 62473 NM_001083341 67216 Mm.167671 NM_001083341 ENSMUSG00000020646 Mboat2 2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2 membrane bound O-acyltransferase domain containing 2 0.000000 0.554140 -4.500543 chr17-237 chr17 27487988 27488144 + 35.6 NA intron (NM_001044719, intron 4 of 4) intron (NM_001044719, intron 4 of 4) -31526 NM_013891 30051 Mm.26768 NM_013891 ENSMUSG00000024215 Spdef PDEF|Pse SAM pointed domain containing ets transcription factor 0.012821 0.496815 2.225304 chr4-361 chr4 45607443 45607599 + 35.6 NA Intergenic Intergenic -55593 NM_001033306 230126 Mm.251716 XM_001474892 ENSMUSG00000044813 Shb BC028832 src homology 2 domain-containing transforming protein B 0.000000 0.522293 -1.405349 chr2-438 chr2 152519249 152519405 + 35.6 NA intron (NM_009743, intron 2 of 2) intron (NM_009743, intron 2 of 2) 3796 NM_009743 12048 Mm.238213 NM_009743 ENSMUSG00000007659 Bcl2l1 Bcl(X)L|Bcl-XL|Bcl-Xs|Bcl2l|BclX|MGC113803|MGC99998|bcl-x BCL2-like 1 0.006410 0.426752 -4.819313 chr4-350 chr4 12785678 12785834 + 35.6 NA Intergenic Intergenic -48227 NM_173746 208820 Mm.12057 NM_001171801 Gm11818 C130086A10|OTTMUSG00000004461|triqk predicted gene 11818 0.000000 0.369427 -2.741197 chr9-408 chr9 120194633 120194789 + 35.6 NA intron (NM_144557, intron 2 of 16) intron (NM_144557, intron 2 of 16) 41941 NM_144557 245049 Mm.100936 NM_144557 ENSMUSG00000041794 Myrip A230081N12Rik|Slac2-c|Slac2c myosin VIIA and Rab interacting protein 0.006410 0.496815 -3.509278 chr1-503 chr1 74743130 74743286 + 35.6 NA Intergenic Intergenic 17983 NM_009518 22409 Mm.5130 NM_009518 ENSMUSG00000026167 Wnt10a - wingless related MMTV integration site 10a 0.012821 0.420382 3.000677 chr4-337 chr4 3017299 3017356 + 35.6 NA Intergenic GSAT_MM|Satellite|Satellite -81902 NM_001167534 100312470 Mm.480297 NM_001167534 Vmn1r2 Gm11776|OTTMUSG00000004179 vomeronasal 1 receptor 2 0.000000 0.327586 -9.560105 chr2-394 chr2 76335948 76336104 + 35.6 NA intron (NM_145525, intron 3 of 26) intron (NM_145525, intron 3 of 26) 112807 NM_011871 23992 Mm.277250 NM_011871 ENSMUSG00000002731 Prkra AV120107|PRK|Pact|RAX protein kinase, interferon inducible double stranded RNA dependent activator 0.025641 0.458599 4.296466 chr6-318 chr6 135601511 135601667 + 35.6 NA Intergenic Intergenic 272966 NM_010128 13730 Mm.182785 NM_010128 ENSMUSG00000030208 Emp1 TMP epithelial membrane protein 1 0.006410 0.490446 -3.180671 chr9-383 chr9 75387594 75387750 + 35.6 NA intron (NM_016711, intron 1 of 9) intron (NM_016711, intron 1 of 9) -2630 NM_001038710 50876 Mm.291880 XM_001480872 ENSMUSG00000032186 Tmod2 N-Tmod|NTMOD tropomodulin 2 0.044872 0.605096 0.453846 chr2-348 chr2 13320339 13320495 + 35.6 NA intron (NM_001081084, intron 28 of 66) intron (NM_001081084, intron 28 of 66) 89312 NM_001081084 65969 Mm.313915 NM_001081084 ENSMUSG00000026726 Cubn AA408369|AL022750|D2Wsu88e cubilin (intrinsic factor-cobalamin receptor) 0.000000 0.439490 -2.556221 chr6-280 chr6 92180268 92180424 + 35.6 NA promoter-TSS (NM_030081) promoter-TSS (NM_030081) -31 NM_030081 78287 Mm.290734 NM_030081 ENSMUSG00000014550 Zfyve20 5330426D11Rik zinc finger, FYVE domain containing 20 0.102564 0.668790 -5.179194 chr7-287 chr7 129443059 129443215 + 35.6 NA Intergenic Intergenic 60127 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|MGC47139|mKIAA1351 WD repeat domain 11 0.019231 0.509554 -1.359924 chr9-376 chr9 65859861 65860017 + 35.6 NA intron (NM_011149, intron 2 of 4) intron (NM_011149, intron 2 of 4) 1765 NM_011149 19035 Mm.335249 NM_011149 ENSMUSG00000032383 Ppib AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b peptidylprolyl isomerase B 0.012821 0.414013 -6.209246 chr4-430 chr4 137944392 137944548 + 35.6 NA Intergenic Intergenic -48402 NM_029401 75718 Mm.251530 XM_144060 ENSMUSG00000028753 Vwa5b1 4931403E03Rik von Willebrand factor A domain containing 5B1 0.019231 0.503185 3.646926 chr5-427 chr5 5011757 5011913 + 35.6 NA intron (NM_011074, intron 10 of 14) intron (NM_011074, intron 10 of 14) -247613 NM_021457 14362 Mm.246003 NM_021457 ENSMUSG00000044674 Fzd1 AW227548|FZ-1 frizzled homolog 1 (Drosophila) 0.000000 0.471338 -5.704515 chr15-196 chr15 72730946 72731102 + 35.6 NA intron (NM_029640, intron 15 of 21) intron (NM_029640, intron 15 of 21) -93444 NR_002864 353342 Mm.440245 NR_002864 Peg13 - paternally expressed 13 0.000000 0.452229 -1.572935 chr2-359 chr2 32058508 32058664 + 35.6 NA promoter-TSS (NM_145145) promoter-TSS (NM_145145) -105 NM_145145 99011 Mm.31192 NM_145145 ENSMUSG00000039254 Pomt1 AI505244 protein-O-mannosyltransferase 1 0.141026 0.649682 -1.948211 chr4-369 chr4 59850715 59850871 + 35.6 NA Intergenic Intergenic 27116 NM_001013577 66209 Mm.443220 NM_001013577 ENSMUSG00000038544 1110054O05Rik 2610312O17Rik|AA399876|Ssbip1 RIKEN cDNA 1110054O05 gene 0.019231 0.496815 -6.792307 chr7-251 chr7 79185250 79185406 + 35.6 NA intron (NM_018811, intron 3 of 10) intron (NM_018811, intron 3 of 10) 38550 NM_018811 54608 Mm.365490 NM_018811 ENSMUSG00000039202 Abhd2 2210009N18Rik|LABH2|Labh-2|MGC107122 abhydrolase domain containing 2 0.006410 0.554140 -2.182404 chr17-267 chr17 62989967 62990123 + 35.6 NA intron (NM_015794, intron 6 of 8) intron (NM_015794, intron 6 of 8) 195997 NM_015794 50758 Mm.136366 XM_001478436 ENSMUSG00000023965 Fbxl17 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 F-box and leucine-rich repeat protein 17 0.006410 0.420382 -3.411459 chr5-484 chr5 102050496 102050652 + 35.6 NA intron (NM_173370, intron 8 of 12) intron (NM_173370, intron 8 of 12) 45143 NM_173370 74596 Mm.46764 NM_173370 ENSMUSG00000029330 Cds1 4833409J18Rik|AI314024|AW125888 CDP-diacylglycerol synthase 1 0.006410 0.509554 -5.959633 chr17-285 chr17 86005982 86006138 + 35.6 NA intron (NM_030133, intron 14 of 20) intron (NM_030133, intron 14 of 20) 47441 NM_030133 78586 Mm.146236 XM_001479682 ENSMUSG00000024135 Srbd1 AI461933|C85414|D530025C17Rik|MGC117756|MGC198776 S1 RNA binding domain 1 0.019231 0.464968 -6.846158 chr19-130 chr19 55285391 55285547 + 35.6 NA intron (NM_001081076, intron 4 of 20) intron (NM_001081076, intron 4 of 20) 9017 NM_001081076 73707 Mm.159051 NM_001081076 ENSMUSG00000055523 Gucy2g 2410077I05Rik|GC-G guanylate cyclase 2g 0.006410 0.509554 -4.748676 chr10-284 chr10 72050599 72050755 + 35.6 NA intron (NM_025635, intron 1 of 7) intron (NM_025635, intron 1 of 7) 483 NM_025635 52696 Mm.62876 NM_025635 ENSMUSG00000019923 Zwint 2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1 ZW10 interactor 0.025641 0.509554 -3.577753 chr7-294 chr7 141023993 141024149 + 35.6 NA 5' UTR (NM_001172100, exon 1 of 10) 5' UTR (NM_001172100, exon 1 of 10) 100 NM_001172100 107702 Mm.279485 NM_001172100 ENSMUSG00000038650 Rnh1 AW546468|C80305|RNH ribonuclease/angiogenin inhibitor 1 0.076923 0.579618 3.042665 chr11-434 chr11 105418135 105418291 + 35.6 NA intron (NM_181071, intron 1 of 25) intron (NM_181071, intron 1 of 25) 12138 NM_181071 77097 Mm.22501 NM_181071 ENSMUSG00000053580 Tanc2 3526402J09Rik|5730590C14Rik tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.000000 0.420382 6.615549 chr9-342 chr9 36696815 36696971 + 35.6 NA intron (NM_001029838, intron 5 of 12) intron (NM_001029838, intron 5 of 12) 103564 NM_183171 235180 Mm.5264 NM_183171 ENSMUSG00000032118 Fez1 MGC19293|UNC-76|UNC76 fasciculation and elongation protein zeta 1 (zygin I) 0.006410 0.496815 -1.434065 chr8-247 chr8 9245465 9245621 + 35.6 NA intron (NM_173446, intron 1 of 2) intron (NM_173446, intron 1 of 2) 525452 NM_173446 270028 Mm.268163 NM_173446 ENSMUSG00000079157 Fam155a 6430500D16|AW121567|Tmem28 family with sequence similarity 155, member A 0.006410 0.433121 -3.316344 chr7-272 chr7 112392346 112392502 + 35.6 NA Intergenic B3|SINE|B2 -78076 NM_001166584 21676 Mm.398985 NM_001166584 ENSMUSG00000055320 Tead1 2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1 TEA domain family member 1 0.006410 0.426752 -3.741996 chr12-325 chr12 71620853 71621009 + 35.6 NA Intergenic Intergenic -123187 NM_028127 319710 Mm.2962 NM_028127 ENSMUSG00000048285 Frmd6 2610019M19Rik|4930488L10Rik|AW212977 FERM domain containing 6 0.012821 0.496815 0.114871 chr4-406 chr4 107624694 107624850 + 35.6 NA Intergenic RMER10A|LTR|ERVL -8341 NM_011327 20280 Mm.379011 NM_011327 ENSMUSG00000028603 Scp2 AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCPx|ns-LTP sterol carrier protein 2, liver 0.000000 0.484076 -5.199986 chr9-375 chr9 64994264 64994420 + 35.6 NA Intergenic Intergenic -18353 NM_177460 214424 Mm.31129 NM_177460 ENSMUSG00000032392 Parp16 BC055447|C79952|MGC65335 poly (ADP-ribose) polymerase family, member 16 0.000000 0.433121 -1.906015 chr3-316 chr3 100595715 100595871 + 35.6 NA Intergenic Intergenic 22460 NM_001142952 74645 Mm.226900 NM_001142952 Fam46c 4930431B09Rik|AI449797 family with sequence similarity 46, member C 0.006410 0.458599 -5.197164 chr1-516 chr1 87871370 87871526 + 35.6 NA Intergenic Intergenic -5585 NM_001144993 72792 Mm.54981 XM_484890 ENSMUSG00000026227 2810459M11Rik - RIKEN cDNA 2810459M11 gene 0.006410 0.401274 -1.189985 chr2-375 chr2 59020853 59021009 + 35.6 NA intron (NM_175464, intron 2 of 20) intron (NM_175464, intron 2 of 20) 59243 NM_175464 227937 Mm.260938 NM_026361 ENSMUSG00000026991 Pkp4 5031422I09Rik|9430019K17Rik|Armrp|MGC100358|MGC105166|p0071 plakophilin 4 0.006410 0.471338 -3.122461 chr19-119 chr19 38580025 38580181 + 35.6 NA Intergenic Intergenic -9237 NM_019588 74055 Mm.34031 NM_019588 ENSMUSG00000024998 Plce1 4933403A21Rik|PLCepsilon|Plce|mKIAA1516 phospholipase C, epsilon 1 0.012821 0.426752 2.507452 chr10-303 chr10 94100599 94100755 + 35.6 NA Intergenic Intergenic 17735 NR_015524 67723 Mm.472849 NR_015524 4932415G12Rik - RIKEN cDNA 4932415G12 gene 0.012821 0.401274 -4.229281 chr5-498 chr5 117420230 117420386 + 35.6 NA intron (NM_001081308, intron 1 of 19) intron (NM_001081308, intron 1 of 19) 25684 NM_001081308 330177 Mm.248296 NM_001081308 ENSMUSG00000061288 Taok3 2900006A08Rik|A130052D22|A430105I05Rik TAO kinase 3 0.012821 0.458599 -8.556391 chr12-294 chr12 30289605 30289761 + 35.6 NA intron (NM_001093775, intron 3 of 24) intron (NM_001093775, intron 3 of 24) 168673 NM_001093776 17933 Mm.418721 XM_001480703 ENSMUSG00000061911 Myt1l 2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106 myelin transcription factor 1-like 0.019231 0.509554 -4.291199 chr15-211 chr15 92399447 92399603 + 35.6 NA intron (NM_001164593, intron 3 of 9) intron (NM_001164593, intron 3 of 9) -25763 NM_001164594 239618 Mm.479306 XM_001481302 Pdzrn4 1110017D07Rik|KIAA3027|LNX4|SAMCAP3L|mKIAA3027 PDZ domain containing RING finger 4 0.012821 0.426752 -4.061798 chr5-473 chr5 85227728 85227884 + 35.6 NA intron (NM_007937, intron 4 of 15) intron (NM_007937, intron 4 of 15) 264137 NM_007937 13839 Mm.438006 NM_007937 ENSMUSG00000029245 Epha5 AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk Eph receptor A5 0.000000 0.541401 -4.839193 chr4-421 chr4 130887702 130887858 + 35.6 NA Intergenic Intergenic 222574 NM_011214 19273 Mm.4860 NM_001083119 ENSMUSG00000028909 Ptpru Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda protein tyrosine phosphatase, receptor type, U 0.012821 0.528662 -9.166135 chr2-416 chr2 121970251 121970407 + 35.6 NA Intergenic Intergenic 19277 NM_177610 214593 Mm.358846 NM_177610 ENSMUSG00000068452 Duox2 A430065P05Rik|LNOX2|NOXEF2|P138-TOX|THOX2 dual oxidase 2 0.012821 0.388535 -1.400775 chr6-310 chr6 120120621 120120777 + 35.6 NA intron (NM_016718, intron 1 of 3) intron (NM_016718, intron 1 of 3) 61701 NM_016718 29862 Mm.103668 NM_016718 ENSMUSG00000041377 Ninj2 MGC143502 ninjurin 2 0.012821 0.541401 -0.742318 chr13-237 chr13 70909097 70909253 + 35.6 NA Intergenic Intergenic 195831 NM_144837 218333 Mm.139738 XM_358313 BC018507 C77245|MGC27742|mKIAA0947 cDNA sequence BC018507 0.000000 0.414013 4.699008 chr4-356 chr4 33360128 33360284 + 35.6 NA exon (NM_019586, exon 1 of 8) exon (NM_019586, exon 1 of 8) 169 NM_019586 56228 Mm.259095 NM_019586 ENSMUSG00000028277 Ube2j1 0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p ubiquitin-conjugating enzyme E2, J1 0.160256 0.783440 -10.799080 chr11-395 chr11 66734841 66734997 + 35.6 NA intron (NM_178656, intron 1 of 1) intron (NM_178656, intron 1 of 1) 6734 NM_178656 193003 Mm.440256 NM_178656 ENSMUSG00000048070 Pirt A530088H08Rik phosphoinositide-interacting regulator of transient receptor potential channels 0.000000 0.496815 -4.790640 chr5-517 chr5 126694615 126694771 + 35.6 NA Intergenic (CAGGA)n|Simple_repeat|Simple_repeat -836335 NM_175432 208213 Mm.479667 XM_915891 ENSMUSG00000034324 Tmem132c 2810482M11Rik|3230401P16|4632425D07Rik transmembrane protein 132C 0.000000 0.503185 5.176252 chr15-181 chr15 32784346 32784502 + 35.6 NA Intergenic Intergenic -80887 NM_008304 15529 Mm.234266 NM_008304 ENSMUSG00000022261 Sdc2 4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2 syndecan 2 0.000000 0.407643 3.330567 chr19-124 chr19 44249477 44249633 + 35.6 NA Intergenic Intergenic -3802 NM_181422 329064 Mm.308481 NM_181422 ENSMUSG00000037578 Pkd2l1 B830002B15|BC046386|PCL|PKD2L|Pkdl|TRPP3 polycystic kidney disease 2-like 1 0.012821 0.477707 -0.988525 chr4-393 chr4 94048744 94048900 + 35.6 NA promoter-TSS (NM_026368) promoter-TSS (NM_026368) -8 NM_026368 67770 Mm.35170 NM_026368 ENSMUSG00000028578 5830433M19Rik AI536248 RIKEN cDNA 5830433M19 gene 0.121795 0.662420 -3.147266 chr2-384 chr2 68267079 68267235 + 35.6 NA intron (NM_016866, intron 1 of 17) intron (NM_016866, intron 1 of 17) 5663 NM_016866 53416 Mm.198414 NM_016866 ENSMUSG00000027030 Stk39 AW227544|AW556857|DCHT|SPAK serine/threonine kinase 39, STE20/SPS1 homolog (yeast) 0.006410 0.541401 -1.098615 chr2-440 chr2 156683427 156683583 + 35.6 NA promoter-TSS (NM_013865) promoter-TSS (NM_013865) 47 NM_013865 29812 Mm.279256 NM_013865 ENSMUSG00000027634 Ndrg3 4833415O14Rik|AI747193|Ndr3 N-myc downstream regulated gene 3 0.102564 0.700637 -10.569593 chr11-457 chr11 117665244 117665400 + 35.6 NA promoter-TSS (NM_009689) promoter-TSS (NM_009689) -4 NM_009689 11799 Mm.8552 NM_001012273 ENSMUSG00000017716 Birc5 AAC-11|Api4|TIAP|survivin40 baculoviral IAP repeat-containing 5 0.141026 0.751592 -5.342325 chr2-425 chr2 136362308 136362464 + 35.6 NA Intergenic Intergenic -42504 NM_011428 20614 Mm.45953 NM_011428 ENSMUSG00000027273 Snap25 Bdr|SNAP-25|sp synaptosomal-associated protein 25 0.019231 0.471338 -3.622732 chr3-266 chr3 9586496 9586652 + 35.6 NA intron (NM_133218, intron 1 of 8) intron (NM_133218, intron 1 of 8) 6584 NM_133218 170753 Mm.212908 NM_133218 ENSMUSG00000040209 Zfp704 C030026M03|C030034L19Rik|Gig1|Znf704 zinc finger protein 704 0.032051 0.490446 1.767640 chr1-508 chr1 79228330 79228486 + 35.6 NA Intergenic B3A|SINE|B2 90706 NM_009129 20254 Mm.5038 NM_009129 ENSMUSG00000050711 Scg2 Chgc|SgII secretogranin II 0.006410 0.471338 5.232720 chr15-187 chr15 43608094 43608250 + 35.6 NA Intergenic L1_Mur3|LINE|L1 91931 NM_175502 239408 Mm.461451 NM_175502 ENSMUSG00000054409 Tmem74 AA549547|B230382K22Rik transmembrane protein 74 0.000000 0.312102 -5.831373 chr7-236 chr7 24351622 24351778 + 35.6 NA Intergenic L1MC4|LINE|L1 6371 NM_133743 72434 Mm.281093 NM_133743 ENSMUSG00000057454 Lypd3 2310061G07Rik|C4.4a Ly6/Plaur domain containing 3 0.012821 0.369427 -3.834951 chr3-354 chr3 157966871 157967027 + 35.6 NA promoter-TSS (NM_001093753) promoter-TSS (NM_001093753) 98 NM_001093753 69207 Mm.223946 NM_001093752 ENSMUSG00000055436 Srsf11 0610009J05Rik|2610019N13Rik|BF642805|Sfrs11 serine/arginine-rich splicing factor 11 0.115385 0.726115 -7.633451 chr2-433 chr2 147530155 147530311 + 35.6 NA Intergenic Intergenic 208177 NM_010446 15376 Mm.938 NM_010446 ENSMUSG00000037025 Foxa2 HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b forkhead box A2 0.019231 0.554140 -1.042426 chr1-564 chr1 176540750 176540906 + 35.6 NA intron (NM_019445, intron 13 of 17) intron (NM_019445, intron 13 of 17) 202329 NM_019445 54418 Mm.330620 NM_019445 ENSMUSG00000028354 Fmn2 AU024104 formin 2 0.000000 0.331210 -4.130243 chr17-223 chr17 10722139 10722295 + 35.6 NA intron (NM_016694, intron 1 of 11) intron (NM_016694, intron 1 of 11) 38476 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 MGC130518|PRKN Parkinson disease (autosomal recessive, juvenile) 2, parkin 0.000000 0.363057 -5.919250 chr6-274 chr6 86565769 86565925 + 35.6 NA Intergenic Intergenic -27960 NM_026414 67855 Mm.183043 NM_026414 ENSMUSG00000033508 Asprv1 2300003P22Rik|AA986851|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 0.025641 0.535032 -7.514979 chr7-242 chr7 44585047 44585203 + 35.6 NA intron (NM_029317, intron 5 of 5) intron (NM_029317, intron 5 of 5) 8341 NM_029317 75510 Mm.273301 XM_620490 ENSMUSG00000066500 Izumo2 1700023D19Rik IZUMO family member 2 0.000000 0.394904 1.868511 chr6-291 chr6 100160640 100160796 + 35.6 NA Intergenic Intergenic 92103 NM_019743 56353 Mm.321633 NM_019743 ENSMUSG00000072872 Rybp 2410018J24Rik|DEDAF|MGC62213|YEAF1 RING1 and YY1 binding protein 0.019231 0.541401 -2.807524 chr3-337 chr3 128032529 128032685 + 35.6 NA Intergenic Intergenic -144262 NM_027482 70617 Mm.317049 NM_027482 ENSMUSG00000050549 5730508B09Rik 2700063A17Rik|C80506|MGC151168|MGC151170 RIKEN cDNA 5730508B09 gene 0.006410 0.484076 -4.611670 chr3-278 chr3 28017369 28017525 + 35.6 NA Intergenic Intergenic 69994 NM_001164437 208613 Mm.59189 XM_149293 ENSMUSG00000043164 Tmem212 E030011K20Rik|Gm564 transmembrane protein 212 0.012821 0.426752 -5.506392 chr6-317 chr6 134409764 134409920 + 35.6 NA Intergenic Intergenic 47821 NM_025778 66813 Mm.474472 NM_025778 ENSMUSG00000030200 Bcl2l14 4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg BCL2-like 14 (apoptosis facilitator) 0.000000 0.420382 -0.466844 chr2-374 chr2 52817723 52817879 + 35.6 NA intron (NM_172409, intron 1 of 26) intron (NM_172409, intron 1 of 26) 137925 NM_172409 71409 Mm.394427 NM_172409 ENSMUSG00000036053 Fmnl2 5430425K04Rik|Man formin-like 2 0.006410 0.445860 -3.964444 chr10-295 chr10 86547314 86547470 + 35.6 NA intron (NM_029685, intron 2 of 5) intron (NM_029685, intron 2 of 5) 59548 NM_029685 76640 Mm.78423 XM_354556 1700113H08Rik - RIKEN cDNA 1700113H08 gene 0.000000 0.433121 -7.581126 chr1-523 chr1 100020567 100020723 + 35.6 NA Intergenic Intergenic -94607 NM_013626 18484 Mm.441453 NM_013626 ENSMUSG00000026335 Pam PHM peptidylglycine alpha-amidating monooxygenase 0.025641 0.452229 -6.188165 chr1-533 chr1 134595181 134595337 + 35.6 NA Intergenic MIRm|SINE|MIR -25916 NM_001160317 269116 Mm.326702 NM_001160316 ENSMUSG00000026442 Nfasc AA387016|D430023G06Rik|NF|mKIAA0756 neurofascin 0.019231 0.522293 2.247545 chr5-524 chr5 135471507 135471663 + 35.6 NA promoter-TSS (NM_011714) promoter-TSS (NM_011714) -364 NM_011714 22385 Mm.40331 NM_011714 ENSMUSG00000002748 Baz1b C87820|WSTF|Wbscr9 bromodomain adjacent to zinc finger domain, 1B 0.070513 0.566879 3.369237 chr19-112 chr19 25358270 25358426 + 35.6 NA intron (NM_181404, intron 2 of 13) intron (NM_181404, intron 2 of 13) 54050 NM_181404 107351 Mm.260722 NM_181404 ENSMUSG00000032702 Kank1 A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|MGC90826|mKIAA0172 KN motif and ankyrin repeat domains 1 0.032051 0.535032 -3.340991 chr2-453 chr2 180203201 180203357 + 35.6 NA promoter-TSS (NM_145851) promoter-TSS (NM_145851) -406 NM_145851 252966 Mm.386884 NM_145851 ENSMUSG00000038990 Cables2 ik3-2 CDK5 and Abl enzyme substrate 2 0.051282 0.573248 7.856685 chr17-264 chr17 49431517 49431673 + 35.6 NA Intergenic Intergenic 224469 NM_181397 76438 Mm.41854 NM_181397 ENSMUSG00000039316 Rftn1 2310015N21Rik|AI853526 raftlin lipid raft linker 1 0.019231 0.503185 -5.907847 chr5-453 chr5 52967069 52967225 + 35.6 NA Intergenic Intergenic -9198 NM_172490 211006 Mm.244719 NM_172490 ENSMUSG00000029173 Sepsecs 9130208G10|AA986712|D5Ertd135e|SLA|SecS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase 0.006410 0.458599 -8.722531 chr15-177 chr15 25892344 25892500 + 35.6 NA intron (NM_025459, intron 2 of 7) intron (NM_025459, intron 2 of 7) 6811 NM_025459 66270 Mm.25311 NM_001034851 ENSMUSG00000022270 Fam134b 1810015C04Rik|AU015349 family with sequence similarity 134, member B 0.019231 0.484076 1.538595 chrX-41 chrX 68550191 68550347 + 35.6 NA Intergenic Intergenic -22828 NM_017369 14404 Mm.391288 NM_017369 ENSMUSG00000031340 Gabre - gamma-aminobutyric acid (GABA) A receptor, subunit epsilon 0.006410 0.286624 -1.244438 chr3-295 chr3 79208469 79208625 + 35.6 NA intron (NM_001099624, intron 1 of 23) intron (NM_001099624, intron 1 of 23) 23255 NM_001099624 76089 Mm.31220 XM_001473837 ENSMUSG00000062232 Rapgef2 5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP Rap guanine nucleotide exchange factor (GEF) 2 0.012821 0.401274 -5.007529 chr12-307 chr12 43853638 43853794 + 35.6 NA Intergenic Intergenic 1226638 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ (Hsp40) homolog, subfamily B, member 9 0.000000 0.318471 0.989749 chr1-541 chr1 138711926 138712082 + 35.6 NA intron (NM_030676, intron 6 of 8) intron (NM_030676, intron 6 of 8) 58037 NM_001159769 26424 Mm.16794 NM_001159769 ENSMUSG00000026398 Nr5a2 AU020803|D1Ertd308e|Ftf|LRH-1 nuclear receptor subfamily 5, group A, member 2 0.006410 0.503185 0.356830 chr6-300 chr6 113132886 113133042 + 35.6 NA TTS (NM_177763) TTS (NM_177763) 28197 NM_177763 269788 Mm.37943 NM_177763 ENSMUSG00000042873 Lhfpl4 1190004M23Rik|AI604880|B230384L07|KIAA4027|MGC65621|mKIAA4027 lipoma HMGIC fusion partner-like protein 4 0.025641 0.490446 -3.695789 chr12-310 chr12 44926942 44927098 + 35.6 NA Intergenic Intergenic 153334 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ (Hsp40) homolog, subfamily B, member 9 0.006410 0.414013 -2.378097 chr7-267 chr7 100817207 100817363 + 35.6 NA intron (NM_183168, intron 1 of 2) intron (NM_183168, intron 1 of 2) -11037 NM_001081116 207212 Mm.29954 NM_001081116 ENSMUSG00000032875 Arhgef17 8030463K16|AI428794|AW558066|BC035332|mKIAA0337 Rho guanine nucleotide exchange factor (GEF) 17 0.019231 0.503185 1.538596 chr4-428 chr4 137340839 137340995 + 35.6 NA intron (NM_172703, intron 3 of 34) intron (NM_172703, intron 3 of 34) 75372 NM_172703 230861 Mm.268903 NM_172703 ENSMUSG00000028760 Eif4g3 1500002J22Rik|4833436O05|4930523M17Rik|G1-419-52|eIF4GII|repro8 eukaryotic translation initiation factor 4 gamma, 3 0.006410 0.471338 -2.721684 chr12-346 chr12 86655543 86655699 + 35.6 NA intron (NM_145447, intron 1 of 9) intron (NM_145447, intron 1 of 9) 19980 NM_145447 217721 Mm.301076 NM_145447 ENSMUSG00000034258 Mfsd7c CCT|Flvcr2|MGC19050 major facilitator superfamily domain containing 7C 0.006410 0.509554 3.170642 chr7-296 chr7 142913652 142913808 + 35.6 NA Intergenic Intergenic -2913 NM_008434 16535 Mm.453037 NM_008434 ENSMUSG00000009545 Kcnq1 AW559127|KVLQT1|Kcna9 potassium voltage-gated channel, subfamily Q, member 1 0.000000 0.375796 -1.282737 chr2-401 chr2 90871204 90871360 + 35.6 NA promoter-TSS (NM_026721) promoter-TSS (NM_026721) -222 NM_026721 68427 Mm.192375 NM_026721 ENSMUSG00000002105 Slc39a13 1100001L14Rik|AA387663|MGC118284|ZIP13 solute carrier family 39 (metal ion transporter), member 13 0.102564 0.681529 -2.391629 chr16-207 chr16 67762114 67762270 + 35.6 NA Intergenic Intergenic -223024 NM_178721 239857 Mm.394300 NM_001145977 ENSMUSG00000064115 Cadm2 2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM2 cell adhesion molecule 2 0.000000 0.350318 -1.259827 chr11-425 chr11 97515827 97515983 + 35.6 NA promoter-TSS (NM_001163308) promoter-TSS (NM_001163308) -167 NM_001163308 22658 Mm.2418 NM_001163307 ENSMUSG00000018537 Pcgf2 Mel18|Rnf110|Zfp144|mel-18 polycomb group ring finger 2 0.025641 0.585987 -7.393813 chr6-323 chr6 145753514 145753670 + 35.6 NA Intergenic Intergenic -11949 NM_027760 71323 Mm.444985 NM_027760 ENSMUSG00000030259 Rassf8 5133400D11Rik|AA815821|AW123240|Hoj1|MGC144731|MGC144732|mHoj-1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 0.019231 0.414013 -2.210860 chr16-198 chr16 33999823 33999979 + 35.6 NA intron (NM_177357, intron 34 of 59) intron (NM_177357, intron 34 of 59) -113151 NM_009471 22247 Mm.466951 NM_009471 ENSMUSG00000022814 Umps 1700095D23Rik|AA408257|AL033308|BB164745 uridine monophosphate synthetase 0.012821 0.382166 2.731717 chr18-211 chr18 83741946 83742102 + 35.6 NA Intergenic Intergenic 478731 NM_001081300 110796 Mm.102136 NM_001081300 ENSMUSG00000046982 Tshz1 5730407I04Rik|D18Bwg1409e|KIAA4206|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1 teashirt zinc finger family member 1 0.025641 0.426752 -2.205743 chr11-450 chr11 115846170 115846326 + 35.6 NA promoter-TSS (NM_172569) promoter-TSS (NM_172569) -163 NM_172569 217331 Mm.297706 NM_172569 ENSMUSG00000020770 Unk B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753 unkempt homolog (Drosophila) 0.044872 0.484076 -3.374737 chr5-466 chr5 75820892 75821048 + 35.6 NA Intergenic Intergenic -35713 NM_001122733 16590 Mm.247073 NM_001122733 ENSMUSG00000005672 Kit Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT kit oncogene 0.012821 0.509554 4.362888 chr11-401 chr11 79102571 79102727 + 35.6 NA Intergenic Intergenic -31759 NM_019653 78889 Mm.474790 NM_001042565 ENSMUSG00000017677 Wsb1 1110056B13Rik|2700038M07Rik WD repeat and SOCS box-containing 1 0.019231 0.471338 -4.050048 chr6-239 chr6 5762170 5762326 + 35.6 NA intron (NM_001191026, intron 6 of 16) intron (NM_001191026, intron 6 of 16) 86610 NM_001191026 13426 Mm.20893 NM_001191023 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 0.006410 0.471338 -1.434065 chr11-378 chr11 42792518 42792674 + 35.6 NA Intergenic Intergenic -200703 NM_176999 319767 Mm.252339 NM_176999 ENSMUSG00000055415 Atp10b 5930426O13Rik|9030605H24Rik ATPase, class V, type 10B 0.000000 0.445860 -1.105095 chr3-335 chr3 126682972 126683128 + 35.6 NA intron (NM_001025438, intron 3 of 18) intron (NM_001025438, intron 3 of 18) 94056 NM_023813 108058 Mm.255822 NM_001025438 ENSMUSG00000053819 Camk2d 2810011D23Rik|8030469K03Rik|KIAA4163|MGC60852|[d]-CaMKII|mKIAA4163 calcium/calmodulin-dependent protein kinase II, delta 0.000000 0.452229 -3.873420 chr13-245 chr13 97670599 97670755 + 35.6 NA intron (NM_023420, intron 2 of 17) intron (NM_023420, intron 2 of 17) 27244 NM_023420 68018 Mm.24125 NM_001164222 ENSMUSG00000021669 Col4a3bp 2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP collagen, type IV, alpha 3 (Goodpasture antigen) binding protein 0.006410 0.382166 -5.036239 chr12-384 chr12 117030591 117030747 + 35.6 NA intron (NM_011215, intron 2 of 22) intron (NM_011215, intron 2 of 22) 102941 NM_011215 19276 Mm.206054 NM_011215 ENSMUSG00000056553 Ptprn2 4930425H11Rik|IA2beta|KIAA0387|PTP-NP|Phol|mKIAA0387|phogrin protein tyrosine phosphatase, receptor type, N polypeptide 2 0.006410 0.363057 2.024076 chr2-439 chr2 152978925 152979081 + 35.6 NA Intergenic Intergenic -3853 NM_008444 16569 Mm.315560 NM_008444 ENSMUSG00000027475 Kif3b AI854312|AW549267|mKIAA0359 kinesin family member 3B 0.070513 0.477707 -3.429670 chr9-334 chr9 21580908 21581064 + 35.6 NA intron (NM_177030, intron 21 of 49) intron (NM_177030, intron 21 of 49) -4925 NM_001080940 624219 Mm.440264 NM_001080940 ENSMUSG00000047822 Gm6484 EG624219 predicted gene 6484 0.006410 0.509554 0.694159 chr7-239 chr7 34227427 34227583 + 35.6 NA Intergenic ORR1D1|LTR|MaLR -129205 NM_025948 67070 Mm.276503 NM_025948 ENSMUSG00000066568 Lsm14a 2700023B17Rik|AA407828|AU017544|Tral LSM14 homolog A (SCD6, S. cerevisiae) 0.012821 0.573248 -5.597547 chr9-384 chr9 77508090 77508246 + 35.6 NA Intergenic RCHARR1|DNA|MER1_type -32325 NM_010295 14629 Mm.89888 NM_010295 ENSMUSG00000032350 Gclc D9Wsu168e|GLCL-H|Ggcs-hs|Glclc glutamate-cysteine ligase, catalytic subunit 0.006410 0.401274 1.887916 chr6-241 chr6 31006025 31006181 + 35.6 NA Intergenic Intergenic -12847 NR_029532 387223 NR_029532 Mir29b-1 Mirn29b|Mirn29b-1 microRNA 29b-1 0.032051 0.554140 -2.739591 chr18-207 chr18 80710480 80710636 + 35.6 NA Intergenic Intergenic -3953 NR_028424 100039348 Mm.254722 NR_028424 Gm2176 A430076E10Rik glucosamine-6-phosphate deaminase 1 pseudogene 0.025641 0.554140 -6.033998 chr4-344 chr4 9398567 9398723 + 35.6 NA intron (NM_001177849, intron 22 of 22) intron (NM_001177849, intron 22 of 22) 172219 NM_001177853 65973 Mm.412008 NM_001177849 ENSMUSG00000028207 Asph 2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37 aspartate-beta-hydroxylase 0.019231 0.496815 -4.684793 chr12-319 chr12 55728426 55728582 + 35.6 NA Intergenic Intergenic -14868 NM_026998 72183 Mm.28240 NM_026998 ENSMUSG00000005656 Snx6 2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963 sorting nexin 6 0.000000 0.433121 -2.263184 chr8-298 chr8 120479959 120480115 + 35.6 NA intron (NM_172285, intron 19 of 32) intron (NM_172285, intron 19 of 32) 77455 NM_028725 74032 Mm.296302 NM_028725 ENSMUSG00000034308 Sdr42e1 4632417N05Rik|AI117603 short chain dehydrogenase/reductase family 42E, member 1 0.012821 0.522293 -3.543183 chr1-532 chr1 133294162 133294318 + 35.6 NA intron (NM_001081011, intron 2 of 22) intron (NM_001081011, intron 2 of 22) 60667 NM_001081011 14270 Mm.476747 NM_001081011 ENSMUSG00000026425 Srgap2 9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3 SLIT-ROBO Rho GTPase activating protein 2 0.000000 0.388535 1.358407 chr5-428 chr5 5013553 5013709 + 35.6 NA intron (NM_011074, intron 10 of 14) intron (NM_011074, intron 10 of 14) -249409 NM_021457 14362 Mm.246003 NM_021457 ENSMUSG00000044674 Fzd1 AW227548|FZ-1 frizzled homolog 1 (Drosophila) 0.038462 0.541401 -1.338950 chr2-358 chr2 27940964 27941120 + 35.6 NA Intergenic L2|LINE|L2 -2514 NR_015557 320194 Mm.214315 NR_015557 F730016J06Rik - RIKEN cDNA F730016J06 gene 0.000000 0.382166 -1.248731 chr4-414 chr4 116618351 116618507 + 35.6 NA 3' UTR (NR_024078, exon 7 of 7) 3' UTR (NR_024078, exon 7 of 7) 5228 NR_024078 78611 Mm.446227 XM_001477060 Btbd19 9530048O09Rik|BB115071 BTB (POZ) domain containing 19 0.057692 0.535032 -5.942686 chr5-471 chr5 82684831 82684987 + 35.6 NA intron (NM_198702, intron 10 of 27) intron (NM_198702, intron 10 of 27) 588756 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.012821 0.490446 -1.543417 chr1-520 chr1 94045783 94045939 + 35.6 NA Intergenic Intergenic -67062 NM_207225 208727 Mm.318567 NM_207225 ENSMUSG00000026313 Hdac4 4932408F19Rik|AI047285 histone deacetylase 4 0.012821 0.477707 -3.039560 chr5-448 chr5 36512446 36512602 + 35.6 NA intron (NM_030889, intron 2 of 26) intron (NM_030889, intron 2 of 26) -8357 NM_175249 76943 Mm.44242 NM_175249 ENSMUSG00000043430 Psapl1 2310020A21Rik prosaposin-like 1 0.012821 0.566879 -1.971759 chr13-221 chr13 52106604 52106760 + 35.6 NA Intergenic Intergenic 247512 NM_011817 23882 Mm.281298 NM_011817 ENSMUSG00000021453 Gadd45g AI327420|C86281|CR6|DDIT2|OIG37 growth arrest and DNA-damage-inducible 45 gamma 0.000000 0.445860 -2.128724 chr12-324 chr12 70393650 70393806 + 35.6 NA Intergenic Intergenic 102974 NM_007481 11845 Mm.27308 NM_007481 ENSMUSG00000044147 Arf6 AI788669|AW496366|MGC102530 ADP-ribosylation factor 6 0.012821 0.560510 1.041651 chr13-209 chr13 30205974 30206130 + 35.6 NA intron (NM_153546, intron 3 of 12) intron (NM_153546, intron 3 of 12) 62098 NM_153546 218121 Mm.89682 NM_153546 ENSMUSG00000038732 Mboat1 9130215M02Rik|BC023845|LPEAT1|MGC38410|Moact1|Oact1 membrane bound O-acyltransferase domain containing 1 0.000000 0.490446 2.316741 chr1-515 chr1 84158069 84158225 + 35.6 NA intron (NM_001003948, intron 1 of 2) intron (NM_001003948, intron 1 of 2) 5523 NM_001003948 98496 Mm.187470 NM_001003948 ENSMUSG00000045658 Pid1 5033414K04Rik|MGC90850 phosphotyrosine interaction domain containing 1 0.012821 0.496815 1.767827 chr17-236 chr17 27250748 27250904 + 35.6 NA Intergenic Intergenic -19933 NM_001013385 268934 Mm.358940 NM_001013385 ENSMUSG00000063239 Grm4 Gprc1d|mGluR4 glutamate receptor, metabotropic 4 0.032051 0.592357 2.029446 chr17-279 chr17 80617238 80617394 + 35.6 NA intron (NM_001081357, intron 1 of 33) intron (NM_001081357, intron 1 of 33) 19103 NM_001081357 225028 Mm.458168 NM_001081357 ENSMUSG00000024242 Map4k3 4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 0.025641 0.554140 1.904647 chr4-391 chr4 92586970 92587126 + 35.6 NA Intergenic Intergenic 240481 NM_026954 69136 Mm.171558 NM_026954 ENSMUSG00000054000 Tusc1 2200001D17Rik|TSG-9 tumor suppressor candidate 1 0.012821 0.363057 -3.082351 chr11-409 chr11 84140759 84140915 + 35.6 NA intron (NM_133360, intron 39 of 53) intron (NM_133360, intron 39 of 53) 129205 NM_133360 107476 Mm.31374 NM_133360 ENSMUSG00000020532 Acaca A530025K05Rik|Acac|Acc1|Gm738 acetyl-Coenzyme A carboxylase alpha 0.012821 0.401274 4.860186 chr12-371 chr12 104410027 104410183 + 35.6 NA intron (NM_027997, intron 1 of 4) intron (NM_027997, intron 1 of 4) 4597 NM_027997 71907 Mm.326723 NM_027997 ENSMUSG00000058260 Serpina9 2310014L03Rik|AW049635|Centerin serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 0.000000 0.490446 -3.652936 chr12-317 chr12 54797056 54797212 + 35.6 NA intron (NM_013780, intron 5 of 11) intron (NM_013780, intron 5 of 11) 328366 NM_028133 112407 Mm.133037 NM_028133 ENSMUSG00000035105 Egln3 2610021G09Rik|AI505553|AI648162|Phd3|SM-20 EGL nine homolog 3 (C. elegans) 0.000000 0.503185 -3.257824 chr2-411 chr2 108708459 108708615 + 35.6 NA Intergenic Intergenic 370592 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mett5d1 0610027B03Rik|AI303697|AW049952|MGC118452 methyltransferase 5 domain containing 1 0.000000 0.414013 -5.604025 chr6-286 chr6 93518940 93519096 + 35.6 NA Intergenic Intergenic 359999 NM_001083321 14924 Mm.217216 NM_001029850 ENSMUSG00000045095 Magi1 AIP3|BAP1|Baiap1|Gukmi1|KIAA4129|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129 membrane associated guanylate kinase, WW and PDZ domain containing 1 0.044872 0.509554 -4.391654 chr11-390 chr11 61303727 61303883 + 35.6 NA intron (NM_029568, intron 5 of 5) intron (NM_029568, intron 5 of 5) 2167 NM_029568 76293 Mm.272278 NM_029568 ENSMUSG00000042436 Mfap4 1110007F23Rik microfibrillar-associated protein 4 0.006410 0.592357 -2.099365 chr14-136 chr14 120584281 120584437 + 35.6 NA Intergenic Intergenic 56075 NM_053079 56643 Mm.155618 NM_053079 ENSMUSG00000025557 Slc15a1 D630032F02|PECT1|PEPT1 solute carrier family 15 (oligopeptide transporter), member 1 0.012821 0.382166 0.277243 chr11-410 chr11 84645168 84645324 + 35.6 NA promoter-TSS (NM_177564) promoter-TSS (NM_177564) -48 NM_177564 192970 Mm.192213 NM_177564 ENSMUSG00000034449 Dhrs11 MGC18716 dehydrogenase/reductase (SDR family) member 11 0.089744 0.694268 -3.123927 chr5-470 chr5 79697169 79697325 + 35.6 NA Intergenic Intergenic -1110724 NR_027806 231332 Mm.373616 NR_027806 Pea15b - phosphoprotein enriched in astrocytes 15B 0.000000 0.452229 0.658683 chr9-339 chr9 31436356 31436512 + 35.6 NA Intergenic Intergenic -222631 NM_144936 235135 Mm.390134 NM_144936 ENSMUSG00000041737 Tmem45b BC018222|MGC25912|MGC37581 transmembrane protein 45b 0.012821 0.458599 5.236701 chr1-488 chr1 64625148 64625304 + 35.6 NA promoter-TSS (NM_001097644) promoter-TSS (NM_001097644) -394 NM_001097644 227210 Mm.39706 XM_001001771 ENSMUSG00000070871 Ccnyl1 9630037P07Rik|AW554339 cyclin Y-like 1 0.147436 0.789809 -8.611530 chr7-270 chr7 110685302 110685458 + 35.6 NA intron (NM_010826, intron 14 of 19) intron (NM_010826, intron 14 of 19) -31246 NM_053247 114332 Mm.396078 NM_053247 ENSMUSG00000030787 Lyve1 1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1 lymphatic vessel endothelial hyaluronan receptor 1 0.019231 0.496815 -4.245749 chr2-406 chr2 102012972 102013128 + 35.6 NA Intergenic Intergenic -25834 NM_178886 241576 Mm.479962 NM_178886 ENSMUSG00000048058 Ldlrad3 6430500P08|AI194318 low density lipoprotein receptor class A domain containing 3 0.006410 0.484076 -0.513875 chr1-572 chr1 189500165 189500321 + 35.6 NA Intergenic MTE2b|LTR|MaLR -198403 NM_011935 26381 Mm.388156 NM_011935 ENSMUSG00000026610 Esrrg ERR3|Errg|NR3B3|mKIAA0832 estrogen-related receptor gamma 0.019231 0.535032 -5.342325 chr5-543 chr5 143326777 143326933 + 35.6 NA intron (NM_207110, intron 13 of 16) intron (NM_207110, intron 13 of 16) 51305 NM_080561 108086 Mm.381440 NM_080561 ENSMUSG00000045078 Rnf216 2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1 ring finger protein 216 0.012821 0.496815 -5.012899 chr4-392 chr4 93680537 93680693 + 35.6 NA Intergenic ID_B1|SINE|B4 368199 NM_026368 67770 Mm.35170 NM_026368 ENSMUSG00000028578 5830433M19Rik AI536248 RIKEN cDNA 5830433M19 gene 0.006410 0.452229 2.393068 chr15-180 chr15 30408228 30408384 + 35.6 NA intron (NM_008729, intron 2 of 22) intron (NM_008729, intron 2 of 22) 291125 NM_008729 18163 Mm.321648 NM_008729 ENSMUSG00000022240 Ctnnd2 Catnd2|Nprap|neurojugin catenin (cadherin associated protein), delta 2 0.006410 0.452229 -7.580938 chr13-234 chr13 64143617 64143773 + 35.6 NA 3' UTR (NM_175494, exon 5 of 5) 3' UTR (NM_175494, exon 5 of 5) -5143 NM_001001321 70484 Mm.133731 NM_001001321 ENSMUSG00000033114 Slc35d2 5730408I21Rik|MGC130109|MGC130110|SQV7L|UGTrel8|hfrc|mUGTrel8 solute carrier family 35, member D2 0.000000 0.375796 -10.415458 chr9-361 chr9 49888276 49888432 + 35.6 NA Intergenic Intergenic -337055 NM_010875 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.006410 0.414013 -2.256701 chr8-322 chr8 130247720 130247876 + 35.6 NA intron (NM_001013580, intron 5 of 13) intron (NM_001013580, intron 5 of 13) 62057 NM_001013580 93742 Mm.299254 NM_001013580 ENSMUSG00000025812 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) 0.012821 0.375796 -1.225391 chr2-441 chr2 156769081 156769237 + 35.6 NA intron (NM_001164663, intron 1 of 14) intron (NM_001164663, intron 1 of 14) 1547 NM_001164663 320706 Mm.79466 XM_283804 ENSMUSG00000055485 9830001H06Rik AI426038|D430036N24Rik RIKEN cDNA 9830001H06 gene 0.038462 0.554140 -1.534616 chr4-368 chr4 56936172 56936328 + 35.6 NA intron (NM_018761, intron 3 of 18) intron (NM_018761, intron 3 of 18) 23015 NM_018761 54366 Mm.218891 NM_018761 ENSMUSG00000038816 Ctnnal1 ACRP|AI616177|AW545119|C86009|Catnal1 catenin (cadherin associated protein), alpha-like 1 0.012821 0.426752 1.769757 chr9-389 chr9 86243563 86243719 + 35.6 NA intron (NM_027394, intron 3 of 9) intron (NM_027394, intron 3 of 9) 17993 NM_027394 70348 Mm.53469 NM_027394 ENSMUSG00000032415 Ube2cbp 2610018I03Rik|MGC144619 ubiquitin-conjugating enzyme E2C binding protein 0.019231 0.458599 -3.124291 chr5-433 chr5 20668688 20668844 + 35.6 NA Intergenic Intergenic -29324 NM_175437 212167 Mm.121705 NM_175437 ENSMUSG00000039934 Pion A530088I07Rik pigeon homolog (Drosophila) 0.012821 0.407643 1.950970 chrX-42 chrX 73861824 73861980 + 35.6 NA intron (NM_020601, intron 1 of 15) intron (NM_020601, intron 1 of 15) 66269 NM_001101585 628893 Mm.477437 XM_893693 Gm6927 EG628893 predicted pseudogene 6927 0.012821 0.471338 4.564333 chr3-326 chr3 116353179 116353335 + 35.6 NA intron (NM_001080818, intron 5 of 15) intron (NM_001080818, intron 5 of 15) 62779 NM_001080818 229776 Mm.17647 NM_001080818 ENSMUSG00000033502 Cdc14a A830059A17Rik|CDC14A2|CDC14a1|Cdc14 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 0.006410 0.471338 3.598510 chr19-123 chr19 42496313 42496469 + 35.6 NA Intergenic Intergenic -11297 NM_145123 72832 Mm.313558 NM_145123 ENSMUSG00000042401 Crtac1 2810454P21Rik|AW047536 cartilage acidic protein 1 0.006410 0.477707 -2.494102 chr19-131 chr19 58917442 58917598 + 35.6 NA Intergenic Intergenic -3286 NM_175199 73442 Mm.39739 NM_175199 ENSMUSG00000025092 Hspa12a 1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|mKIAA0417 heat shock protein 12A 0.000000 0.509554 -3.723377 chr17-282 chr17 81435620 81435776 + 35.6 NA intron (NM_011406, intron 2 of 10) intron (NM_011406, intron 2 of 10) 211005 NM_001112798 20541 Mm.265834 NM_001112798 ENSMUSG00000054640 Slc8a1 AI852629|AV344025|D930008O12Rik|MGC90693|Ncx1 solute carrier family 8 (sodium/calcium exchanger), member 1 0.019231 0.433121 0.808065 chr2-376 chr2 62146351 62146507 + 35.6 NA intron (NM_001159543, intron 22 of 24) intron (NM_001159543, intron 22 of 24) 66641 NM_010074 13482 Mm.1151 NM_001159543 ENSMUSG00000035000 Dpp4 Cd26|Dpp-4|THAM dipeptidylpeptidase 4 0.012821 0.382166 -6.139843 chr7-295 chr7 141637686 141637842 + 35.6 NA Intergenic L1M4c|LINE|L1 -10697 NM_028801 74180 Mm.200752 NM_028801 ENSMUSG00000066108 Muc5b 2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b mucin 5, subtype B, tracheobronchial 0.012821 0.324841 8.210833 chr14-116 chr14 45605745 45605901 + 35.6 NA Intergenic (CAGTA)n|Simple_repeat|Simple_repeat -76594 NM_028222 72391 Mm.272394 XM_899867 ENSMUSG00000037628 Cdkn3 2410006H10Rik cyclin-dependent kinase inhibitor 3 0.000000 0.414013 -3.564353 chr1-549 chr1 158569108 158569264 + 35.6 NA Intergenic Intergenic -13599 NM_145413 215015 Mm.229107 NM_145413 ENSMUSG00000033557 Fam20b C530043G21Rik|mKIAA0475 family with sequence similarity 20, member B 0.006410 0.477707 -3.374737 chr5-485 chr5 102700826 102700982 + 35.6 NA Intergenic Intergenic -20788 NM_146161 231532 Mm.477263 NM_029270 ENSMUSG00000057315 Arhgap24 0610025G21Rik|MGC38749 Rho GTPase activating protein 24 0.012821 0.414013 -0.842248 chr2-424 chr2 135988895 135989051 + 35.6 NA intron (NM_172858, intron 1 of 9) intron (NM_172858, intron 1 of 9) 90435 NM_172858 241656 Mm.131572 NM_172858 ENSMUSG00000039913 Pak7 2900083L08Rik|6430627N20|MGC117585|Pak5 p21 protein (Cdc42/Rac)-activated kinase 7 0.000000 0.414013 -4.034175 chr8-260 chr8 37417542 37417698 + 35.6 NA Intergenic Intergenic -122544 NM_027998 71908 Mm.37817 NM_027998 ENSMUSG00000055976 Cldn23 2310014B08Rik claudin 23 0.012821 0.522293 -2.774579 chr3-293 chr3 66890107 66890263 + 35.6 NA Intergenic Intergenic 179515 NM_013665 20429 Mm.39093 NM_013665 ENSMUSG00000027833 Shox2 6330543G17Rik|OG12|Og12x|Prx3|SHOT short stature homeobox 2 0.006410 0.458599 -3.677001 chr9-357 chr9 48506010 48506166 + 35.6 NA intron (NM_001033324, intron 2 of 6) intron (NM_001033324, intron 2 of 6) 81776 NM_001033324 235320 Mm.457803 NM_001033324 ENSMUSG00000066687 Zbtb16 AI467657|PLZF|Zfp145|lu zinc finger and BTB domain containing 16 0.012821 0.439490 -3.407387 chr5-511 chr5 125492126 125492282 + 35.6 NA Intergenic Intergenic -24011 NM_011424 20602 Mm.278646 NM_011424 ENSMUSG00000029478 Ncor2 N-CoR|SMRT|SMRTe nuclear receptor co-repressor 2 0.012821 0.605096 -5.681175 chr3-315 chr3 98321463 98321619 + 35.6 NA intron (NM_026328, intron 5 of 5) intron (NM_026328, intron 5 of 5) 13981 NM_026328 67709 Mm.46306 NM_026328 ENSMUSG00000027876 Reg4 2010002L15Rik|GISP|RELP regenerating islet-derived family, member 4 0.006410 0.407643 -3.629596 chr19-101 chr19 7561314 7561470 + 35.6 NA promoter-TSS (NM_146091) promoter-TSS (NM_146091) -89 NM_146091 109168 Mm.264016 NM_001163505 ENSMUSG00000024759 Atl3 4633402C03Rik|5730596K20Rik|AI465397|AW228836|MGC28761 atlastin GTPase 3 0.141026 0.681529 -4.123435 chr2-396 chr2 79248676 79248832 + 35.6 NA Intergenic Intergenic 8721 NM_010894 18012 Mm.4636 NM_010894 ENSMUSG00000034701 Neurod1 BETA2|BHF-1|Neurod|bHLHa3 neurogenic differentiation 1 0.012821 0.394904 -5.008947 chr8-297 chr8 119060156 119060312 + 35.6 NA Intergenic Intergenic -330757 NM_029297 75465 Mm.23114 NM_029297 ENSMUSG00000034467 Dynlrb2 1700009A04Rik|DNLC2B|Dncl2b dynein light chain roadblock-type 2 0.000000 0.407643 1.179224 chr11-463 chr11 119759252 119759408 + 35.6 NA exon (NM_130862, exon 1 of 14) exon (NM_130862, exon 1 of 14) 149 NM_001037755 108100 Mm.197534 NM_001037754 ENSMUSG00000025372 Baiap2 IRSp53|R75030 brain-specific angiogenesis inhibitor 1-associated protein 2 0.083333 0.636943 -6.653601 chr2-346 chr2 7418997 7419153 + 35.6 NA Intergenic Intergenic -105024 NM_001110231 14007 Mm.411896 NM_001110228 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 0.012821 0.471338 -0.636473 chr14-109 chr14 24327126 24327282 + 35.6 NA intron (NM_183208, intron 1 of 23) intron (NM_183208, intron 1 of 23) 34729 NM_183208 328365 Mm.227484 XM_001472051 ENSMUSG00000007817 Zmiz1 BC065120|E330020C23|I920194n01|Rai17|Zimp10 zinc finger, MIZ-type containing 1 0.012821 0.560510 -10.547462 chr8-300 chr8 122044881 122045037 + 35.6 NA intron (NM_019707, intron 7 of 13) intron (NM_019707, intron 7 of 13) -185555 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 0.025641 0.535032 5.364838 chr6-254 chr6 41095159 41095315 + 35.6 NA Intergenic Intergenic -130121 NM_023333 67373 Mm.153729 NM_023333 ENSMUSG00000029882 2210010C04Rik AV072249 RIKEN cDNA 2210010C04 gene 0.000000 0.535032 -4.998217 chr6-307 chr6 119205804 119205960 + 35.6 NA intron (NM_001033382, intron 2 of 37) intron (NM_001033382, intron 2 of 37) 3738 NM_001033382 319734 Mm.440773 NM_001033382 ENSMUSG00000041460 Cacna2d4 5730412N02Rik|BE686333 calcium channel, voltage-dependent, alpha 2/delta subunit 4 0.019231 0.509554 1.346514 chr9-340 chr9 36431373 36431529 + 35.6 NA Intergenic Intergenic -11439 NM_007391 11451 Mm.4776 NM_007391 ENSMUSG00000032110 Acrv1 Msa63|SP-10 acrosomal vesicle protein 1 0.006410 0.426752 -0.439702 chr15-199 chr15 74914237 74914282 + 35.6 NA Intergenic RLTR11A|LTR|ERVK 24945 NM_001099217 100041546 Mm.1583 XM_001477071 ENSMUSG00000022584 Ly6c2 Ly-6C.2|MGC103163 lymphocyte antigen 6 complex, locus C2 0.000000 0.326087 -7.024827 chr1-470 chr1 36482527 36482683 + 35.6 NA TTS (NM_026241) TTS (NM_026241) -2330 NM_153502 78321 Mm.41421 NM_153502 ENSMUSG00000067653 Ankrd23 1110058D09Rik|2310041C05Rik|AI853437|Darp|MARP3 ankyrin repeat domain 23 0.012821 0.414013 3.386428 chr3-349 chr3 153525507 153525663 + 35.6 NA intron (NM_011372, intron 1 of 4) intron (NM_011372, intron 1 of 4) 136934 NM_011372 20447 Mm.440929 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.032051 0.484076 3.170642 chr16-218 chr16 92895264 92895420 + 35.6 NA Intergenic Intergenic -180736 NM_001111022 12394 Mm.470227 NM_001111021 ENSMUSG00000022952 Runx1 AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b runt related transcription factor 1 0.025641 0.624204 -2.042792 chr1-544 chr1 140209699 140209855 + 35.6 NA Intergenic Intergenic 119629 NM_177397 338375 Mm.114424 NM_177397 ENSMUSG00000026394 Atp6v1g3 MGC130213|MGC130214 ATPase, H+ transporting, lysosomal V1 subunit G3 0.000000 0.375796 -5.642256 chr11-424 chr11 97104151 97104307 + 35.6 NA Intergenic Intergenic -7563 NM_008942 19155 Mm.29824 NM_008942 ENSMUSG00000001441 Npepps AAP-S|MGC102199|MP100|Psa|R74825|goku aminopeptidase puromycin sensitive 0.000000 0.458599 -2.860153 chr17-284 chr17 84971137 84971293 + 35.6 NA TTS (NM_145984) TTS (NM_145984) 27378 NM_145984 213760 Mm.461481 NM_001163622 ENSMUSG00000024127 Prepl 2810457N15Rik|9530014L06Rik|D030028O16Rik|MGC7980|mKIAA0436 prolyl endopeptidase-like 0.025641 0.401274 -0.622578 chr3-348 chr3 152333904 152334060 + 35.6 NA promoter-TSS (NM_198416) promoter-TSS (NM_198416) -97 NM_198416 108946 Mm.379292 NM_001080755 ENSMUSG00000039068 Zzz3 3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514 zinc finger, ZZ domain containing 3 0.121795 0.649682 -3.378394 chr8-317 chr8 128881249 128881405 + 35.6 NA 5' UTR (NM_008430, exon 1 of 3) 5' UTR (NM_008430, exon 1 of 3) 136 NM_008430 16525 Mm.10800 NM_008430 ENSMUSG00000033998 Kcnk1 AI788889|TWIK-1 potassium channel, subfamily K, member 1 0.044872 0.681529 -3.701686 chr15-214 chr15 100017245 100017401 + 35.6 NA intron (NM_001159361, intron 23 of 37) intron (NM_001159361, intron 23 of 37) 34894 NM_172819 239667 Mm.243658 NM_001159361 ENSMUSG00000023026 Dip2b 4932422C22|AI317237|AI854602|KIAA1463|mKIAA1463 DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.019231 0.420382 -6.353225 chr11-419 chr11 94805885 94806041 + 35.6 NA Intergenic Intergenic -1338 NM_172261 217124 Mm.476821 NM_172261 ENSMUSG00000038976 Ppp1r9b MGC38940|Spn protein phosphatase 1, regulatory subunit 9B 0.019231 0.605096 2.873756 chr17-276 chr17 77929098 77929254 + 35.6 NA Intergenic Intergenic -176129 NM_015800 50766 Mm.311912 NM_015800 ENSMUSG00000024074 Crim1 AU015004 cysteine rich transmembrane BMP regulator 1 (chordin like) 0.012821 0.484076 -4.635010 chr9-373 chr9 64181442 64181598 + 35.6 NA Intergenic Intergenic -2111 NM_172522 214058 Mm.405602 NM_001134399 ENSMUSG00000036466 Megf11 2410080H04Rik|D130061K05 multiple EGF-like-domains 11 0.019231 0.509554 -4.807614 chr1-507 chr1 75362430 75362586 + 35.6 NA promoter-TSS (NM_177056) promoter-TSS (NM_177056) 111 NM_001001565 74241 Mm.260577 NM_001001565 ENSMUSG00000032997 Chpf 1700028N03Rik|AI414328|D1Bwg1363e chondroitin polymerizing factor 0.089744 0.713376 -5.280850 chr2-364 chr2 34053632 34053788 + 35.6 NA intron (NM_016768, intron 2 of 8) intron (NM_016768, intron 2 of 8) 140335 NM_016768 18516 Mm.239941 NM_016768 ENSMUSG00000038718 Pbx3 - pre B-cell leukemia transcription factor 3 0.019231 0.522293 0.364096 chr1-579 chr1 194787843 194787999 + 35.6 NA Intergenic Intergenic 43054 NM_145415 215193 Mm.397506 NM_145415 ENSMUSG00000016181 AA408296 AW045375|Def expressed sequence AA408296 0.012821 0.560510 1.523008 chr3-342 chr3 138162882 138163038 + 35.6 NA intron (NM_009626, intron 5 of 8) intron (NM_009626, intron 5 of 8) 7801 NM_009626 11529 Mm.8473 NM_009626 ENSMUSG00000055301 Adh7 AI325182|Adh-3|Adh-3e|Adh-3t|Adh3|Adh3-e|Adh3-t|Adh4|Adt-1 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide 0.006410 0.394904 3.501188 chr1-565 chr1 179245665 179245821 + 35.6 NA Intergenic Intergenic -35592 NM_001012330 30928 Mm.480309 NM_001012330 ENSMUSG00000063659 Zfp238 RP58|Znf238 zinc finger protein 238 0.006410 0.464968 1.497113 chr11-381 chr11 51811010 51811166 + 35.6 NA promoter-TSS (NM_029976) promoter-TSS (NM_029976) 35 NM_029976 52626 Mm.289456 NM_029976 ENSMUSG00000020392 Cdkn2aipnl A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520 CDKN2A interacting protein N-terminal like 0.141026 0.738854 -2.873026 chr3-267 chr3 10392307 10392463 + 35.6 NA Intergenic ORR1C2-int|LTR|MaLR 30271 NM_029068 74718 Mm.440548 NM_001127191 ENSMUSG00000027534 Snx16 4930522N22Rik|AI117577|AI747675 sorting nexin 16 0.006410 0.439490 -9.054324 chr10-282 chr10 70457608 70457764 + 35.6 NA intron (NM_031397, intron 2 of 20) intron (NM_031397, intron 2 of 20) 97248 NM_031397 83675 Mm.458090 NM_031397 ENSMUSG00000014329 Bicc1 Bic-C|MGC124370|bpk|jcpk bicaudal C homolog 1 (Drosophila) 0.006410 0.452229 -3.878121 chr10-316 chr10 120916128 120916284 + 35.6 NA Intergenic Intergenic -36896 NM_138956 192678 Mm.41265 NM_138956 ENSMUSG00000025795 Rassf3 AW212023|AW322379 Ras association (RalGDS/AF-6) domain family member 3 0.006410 0.394904 -0.179244 chr9-396 chr9 104956500 104956656 + 35.6 NA Intergenic Intergenic 33327 NM_029385 75686 Mm.305810 XM_001471758 ENSMUSG00000032565 Nudt16 2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783 nudix (nucleoside diphosphate linked moiety X)-type motif 16 0.000000 0.464968 -4.397065 chr8-312 chr8 126028259 126028415 + 35.6 NA TTS (NM_020564) TTS (NM_020564) 16033 NM_020564 57429 Mm.6562 NM_020564 ENSMUSG00000000739 Sult5a1 Sult-x1|Sultx1 sulfotransferase family 5A, member 1 0.025641 0.484076 -3.390049 chr10-309 chr10 98023796 98023952 + 35.6 NA Intergenic Intergenic -320965 NM_026482 67972 Mm.471912 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 ATPase, Ca++ transporting, plasma membrane 1 0.019231 0.426752 -4.690114 chr3-338 chr3 129532255 129532411 + 35.6 NA intron (NM_130450, intron 2 of 4) intron (NM_130450, intron 2 of 4) 7926 NM_130450 170439 Mm.314113 NM_130450 ENSMUSG00000041220 Elovl6 C77826|FAE|LCE|MGC107467 ELOVL family member 6, elongation of long chain fatty acids (yeast) 0.012821 0.356688 -1.448839 chr10-285 chr10 74587918 74588074 + 35.6 NA intron (NM_001081412, intron 7 of 22) intron (NM_001081412, intron 7 of 22) -67792 NM_153406 74392 Mm.27716 NM_001145826 ENSMUSG00000033444 Cytsa 4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Specc1l|mKIAA0376 cytospin A 0.019231 0.522293 -4.410086 chr1-577 chr1 194154988 194155144 + 35.6 NA intron (NM_001038607, intron 10 of 10) intron (NM_001038607, intron 10 of 10) 263471 NM_010600 16510 Mm.4489 NM_001038607 ENSMUSG00000058248 Kcnh1 M-eag|MGC124419|MGC124420 potassium voltage-gated channel, subfamily H (eag-related), member 1 0.012821 0.433121 0.025447 chr4-345 chr4 9468764 9468920 + 35.6 NA intron (NM_001177849, intron 13 of 22) intron (NM_001177849, intron 13 of 22) 102022 NM_001177853 65973 Mm.412008 NM_001177849 ENSMUSG00000028207 Asph 2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37 aspartate-beta-hydroxylase 0.006410 0.439490 -5.410473 chr5-503 chr5 120823434 120823590 + 35.6 NA intron (NM_145853, intron 2 of 27) intron (NM_145853, intron 2 of 27) 25718 NM_145853 252972 Mm.114054 NM_145853 ENSMUSG00000032741 Tpcn1 5730403B01Rik|Tpc1|mKIAA1169 two pore channel 1 0.012821 0.445860 -6.132166 chr7-288 chr7 133156056 133156212 + 35.6 NA Intergenic Intergenic -194308 NM_009980 13017 Mm.389984 NM_001170744 ENSMUSG00000030970 Ctbp2 AA407280|D7Ertd45e|Gtrgeo6|Ribeye C-terminal binding protein 2 0.000000 0.286624 2.252892 chr5-659 chr5 113996373 113996529 + 30.5 NA promoter-TSS (NM_001010825) promoter-TSS (NM_001010825) -329 NM_001010825 231630 Mm.21926 NM_001010825 ENSMUSG00000053334 Ficd D5Ertd40e|Hype|MGC117722 FIC domain containing 0.019231 0.484076 -2.261323 chr1-645 chr1 72177291 72177447 + 30.5 NA Intergenic CpG -31854 NM_001005423 381269 Mm.422636 NM_001005423 ENSMUSG00000039395 Mreg Gm974|MGC92980|Wdt2|dsu melanoregulin 0.083333 0.592357 -8.905890 chr5-620 chr5 78317075 78317231 + 30.5 NA Intergenic Intergenic -23115 NM_011263 19712 Mm.28840 NM_011263 ENSMUSG00000029249 Rest 2610008J04Rik|AA407358|MGC150099|NRSF RE1-silencing transcription factor 0.006410 0.458599 2.791168 chr9-524 chr9 116687041 116687197 + 30.5 NA intron (NM_001172121, intron 5 of 14) intron (NM_001172121, intron 5 of 14) 414062 NM_001172123 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.000000 0.585987 1.024492 chr12-424 chr12 47576595 47576751 + 30.5 NA exon (NM_021361, exon 5 of 5) exon (NM_021361, exon 5 of 5) 118059 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.012821 0.471338 -1.068037 chr14-192 chr14 120309756 120309912 + 30.5 NA intron (NM_134082, intron 2 of 26) intron (NM_134082, intron 2 of 26) 139081 NM_134082 223254 Mm.223980 NM_134082 ENSMUSG00000025555 Farp1 AW228844|BC030329|Cdep FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) 0.000000 0.585987 -2.424863 chr1-626 chr1 59778474 59778630 + 30.5 NA intron (NM_007561, intron 3 of 12) intron (NM_007561, intron 3 of 12) 69370 NM_007561 12168 Mm.391654 NM_007561 ENSMUSG00000067336 Bmpr2 2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-II|BMPRII bone morphogenic protein receptor, type II (serine/threonine kinase) 0.006410 0.490446 -2.501329 chr4-580 chr4 151626473 151626629 + 30.5 NA Intergenic Intergenic 85212 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.019231 0.503185 0.333490 chr14-168 chr14 56136679 56136835 + 30.5 NA Intergenic Intergenic -49070 NM_001010937 14623 Mm.25652 NM_001010937 ENSMUSG00000040055 Gjb6 AA958971|Cx30|D14Bwg0506e gap junction protein, beta 6 0.006410 0.433121 -5.964719 chr1-666 chr1 79786446 79786602 + 30.5 NA Intergenic ERVL-E|LTR|ERVL -48835 NM_009255 20720 Mm.3093 NM_009255 ENSMUSG00000026249 Serpine2 B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4 serine (or cysteine) peptidase inhibitor, clade E, member 2 0.000000 0.439490 3.075526 chr9-487 chr9 72852995 72853151 + 30.5 NA intron (NM_023635, intron 1 of 5) intron (NM_023635, intron 1 of 5) 11077 NM_023635 11891 Mm.480676 NM_023635 ENSMUSG00000032202 Rab27a 2210402C08Rik|2410003M20Rik|4933437C11Rik|ash RAB27A, member RAS oncogene family 0.012821 0.484076 -0.414520 chr12-488 chr12 105139658 105139814 + 30.5 NA intron (NM_148948, intron 1 of 26) intron (NM_148948, intron 1 of 26) 13266 NM_148948 192119 Mm.21135 NM_148948 ENSMUSG00000041415 Dicer1 1110006F08Rik|D12Ertd7e|mKIAA0928 Dicer1, Dcr-1 homolog (Drosophila) 0.006410 0.490446 -2.948137 chr10-332 chr10 21477122 21477278 + 30.5 NA Intergenic Intergenic -94399 NM_001161845 20393 Mm.28405 NM_001161845 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 0.012821 0.547771 0.144390 chr9-495 chr9 83786374 83786530 + 30.5 NA intron (NM_199195, intron 5 of 10) intron (NM_199195, intron 5 of 10) 40954 NM_199195 12040 Mm.12819 NM_199195 ENSMUSG00000032263 Bckdhb - branched chain ketoacid dehydrogenase E1, beta polypeptide 0.000000 0.420382 -7.267147 chrX-82 chrX 164742707 164742863 + 30.5 NA Intergenic Intergenic -78337 NM_008222 15159 Mm.478173 NM_008222 ENSMUSG00000031352 Hccs - holocytochrome c synthetase 0.000000 0.407643 3.364525 chr9-448 chr9 54778050 54778206 + 30.5 NA promoter-TSS (NM_176844) promoter-TSS (NM_176844) -888 NM_176844 110835 Mm.103778 NM_176844 ENSMUSG00000035594 Chrna5 Acra-5|Acra5|MGC124059|MGC124168 cholinergic receptor, nicotinic, alpha polypeptide 5 0.012821 0.452229 5.059381 chr2-465 chr2 14123239 14123395 + 30.5 NA intron (NM_001081310, intron 3 of 3) intron (NM_001081310, intron 3 of 3) -23850 NM_008625 17533 Mm.2019 NM_008625 ENSMUSG00000026712 Mrc1 AW259686|CD206|MR mannose receptor, C type 1 0.006410 0.426752 0.145303 chr10-410 chr10 95617978 95618134 + 30.5 NA Intergenic Intergenic 247706 NM_001001932 216238 Mm.476895 NM_001001932 ENSMUSG00000036499 Eea1 A430109M19Rik|B230358H09Rik|ZFYVE2 early endosome antigen 1 0.025641 0.484076 1.757088 chr11-629 chr11 119607067 119607223 + 30.5 NA intron (NM_028898, intron 7 of 33) intron (NM_028898, intron 7 of 33) -122754 NM_001085498 208092 Mm.306673 XM_126613 ENSMUSG00000025371 Chmp6 2400004G01Rik chromatin modifying protein 6 0.012821 0.426752 -3.450498 chr3-390 chr3 81188308 81188464 + 30.5 NA intron (NM_019971, intron 1 of 5) intron (NM_019971, intron 1 of 5) 66044 NM_019971 54635 Mm.331089 NM_019971 ENSMUSG00000028019 Pdgfc 1110064L01Rik|AI647969|PDGF-C platelet-derived growth factor, C polypeptide 0.006410 0.388535 -5.970089 chr14-140 chr14 6819193 6819349 + 30.5 NA intron (NM_025341, intron 1 of 8) intron (NM_025341, intron 1 of 8) 24491 NM_025341 66082 Mm.181473 NM_025341 ENSMUSG00000025277 Abhd6 0610041D24Rik|AA673485|AV065425 abhydrolase domain containing 6 0.019231 0.496815 -0.865795 chr17-330 chr17 28753019 28753175 + 30.5 NA Intergenic Intergenic -7242 NM_013663 20383 Mm.6787 NM_013663 ENSMUSG00000071172 Srsf3 AL024116|Sfrs3|X16 serine/arginine-rich splicing factor 3 0.012821 0.560510 -5.507034 chr5-558 chr5 9302285 9302441 + 30.5 NA intron (NM_172706, intron 1 of 21) intron (NM_172706, intron 1 of 21) 30165 NM_172706 231014 Mm.130063 NM_172706 ENSMUSG00000056004 9330182L06Rik - RIKEN cDNA 9330182L06 gene 0.006410 0.401274 -3.211576 chr18-246 chr18 40308772 40308928 + 30.5 NA Intergenic Intergenic 36523 NM_023311 67180 Mm.270382 NM_023311 ENSMUSG00000024487 Yipf5 2610311I19Rik|AA408236|Yip1a Yip1 domain family, member 5 0.000000 0.312102 -4.588009 chr14-178 chr14 75991231 75991387 + 30.5 NA intron (NM_172813, intron 1 of 18) intron (NM_172813, intron 1 of 18) 100339 NM_172813 239188 Mm.441158 NM_172813 ENSMUSG00000022012 Enox1 B230207J08|D230005D02Rik ecto-NOX disulfide-thiol exchanger 1 0.012821 0.477707 -1.949687 chr14-159 chr14 30029165 30029321 + 30.5 NA intron (NM_022656, intron 3 of 20) intron (NM_022656, intron 3 of 20) 6592 NM_022656 64652 Mm.298728 NM_022656 ENSMUSG00000021910 Nisch 1200007D05Rik|3202002H23Rik|AW494485|I-1 nischarin 0.006410 0.484076 1.934121 chr12-513 chr12 116623423 116623579 + 30.5 NA Intergenic Intergenic 81533 NM_146039 217935 Mm.31382 NM_146039 ENSMUSG00000042050 Wdr60 D430033N04Rik|MGC29335 WD repeat domain 60 0.006410 0.452229 -5.957065 chr17-295 chr17 8743794 8743950 + 30.5 NA intron (NM_011866, intron 2 of 21) intron (NM_011866, intron 2 of 21) -82634 NM_025851 66931 Mm.67591 NM_025851 ENSMUSG00000023873 1700010I14Rik - RIKEN cDNA 1700010I14 gene 0.019231 0.484076 1.868511 chr9-516 chr9 113291018 113291174 + 30.5 NA Intergenic Intergenic 265861 NM_001164678 18571 Mm.29816 NM_001164677 ENSMUSG00000032504 Pdcd6ip AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375 programmed cell death 6 interacting protein 0.057692 0.598726 -6.708519 chr10-431 chr10 128208376 128208532 + 30.5 NA promoter-TSS (NM_028873) promoter-TSS (NM_028873) -170 NM_028873 74330 Mm.296915 NM_028873 ENSMUSG00000025354 Dnajc14 5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6 DnaJ (Hsp40) homolog, subfamily C, member 14 0.134615 0.687898 -11.104514 chr11-632 chr11 120414451 120414607 + 30.5 NA promoter-TSS (NM_025389) promoter-TSS (NM_025389) 19 NM_025389 66156 Mm.21645 NM_001038230 ENSMUSG00000025135 Anapc11 1110011I19Rik|R75218 anaphase promoting complex subunit 11 0.198718 0.757962 -5.723245 chr14-156 chr14 23845587 23845743 + 30.5 NA Intergenic Intergenic -446810 NM_183208 328365 Mm.227484 XM_001472051 ENSMUSG00000007817 Zmiz1 BC065120|E330020C23|I920194n01|Rai17|Zimp10 zinc finger, MIZ-type containing 1 0.012821 0.394904 -5.702188 chr6-349 chr6 40130946 40131102 + 30.5 NA intron (NM_001004182, intron 1 of 2) intron (NM_001004182, intron 1 of 2) 91165 NM_001004182 434008 Mm.130209 NM_001004182 ENSMUSG00000057716 Gm5567 EG434008 predicted gene 5567 0.019231 0.445860 -5.035693 chr12-403 chr12 27599490 27599646 + 30.5 NA Intergenic Intergenic 329418 NM_009234 20666 Mm.466344 NM_009234 ENSMUSG00000063632 Sox11 1110038H03Rik|6230403H02Rik|AI836553|end1 SRY-box containing gene 11 0.000000 0.324841 1.632005 chr10-419 chr10 107418041 107418197 + 30.5 NA Intergenic L1MA4|LINE|L1 -101875 NM_001177567 628870 Mm.336090 XM_001478590 Gm6924 EG628870 predicted gene 6924 0.006410 0.299363 0.039352 chr1-705 chr1 127303978 127304134 + 30.5 NA Intergenic Intergenic -41020 NM_023735 74117 Mm.183102 NM_023735 ENSMUSG00000026341 Actr3 1200003A09Rik|Arp3|MGC118188 ARP3 actin-related protein 3 homolog (yeast) 0.012821 0.528662 -7.496725 chr5-706 chr5 139201674 139201830 + 30.5 NA Intergenic Intergenic 46843 NM_008808 18590 Mm.2675 NM_008808 ENSMUSG00000025856 Pdgfa - platelet derived growth factor, alpha 0.032051 0.649682 -3.949152 chr15-256 chr15 54963389 54963545 + 30.5 NA promoter-TSS (NM_001037937) promoter-TSS (NM_001037937) -51 NM_001037937 97998 Mm.393497 NM_001037937 ENSMUSG00000022419 Depdc6 4731402B04Rik|9130412E02Rik|D15Ertd336e|D15Ertd597e|Depdc6-001|Depdc6-002|KIAA4200|R75183|mKIAA4200 DEP domain containing 6 0.019231 0.439490 -3.003338 chr10-360 chr10 74366617 74366773 + 30.5 NA Intergenic Intergenic -44251 NM_010311 14687 Mm.393508 NM_010311 ENSMUSG00000040009 Gnaz AI847979|Gz guanine nucleotide binding protein, alpha z subunit 0.012821 0.528662 -4.755774 chr12-463 chr12 87546134 87546290 + 30.5 NA Intergenic Intergenic -21590 NM_177354 238328 Mm.216101 NM_177354 ENSMUSG00000021256 Vash1 AI834978|D930046M13Rik|G630009D10Rik vasohibin 1 0.006410 0.420382 -4.067189 chr12-441 chr12 74009851 74010007 + 30.5 NA Intergenic Intergenic 22154 NM_011382 20474 Mm.249575 NM_011382 ENSMUSG00000034460 Six4 AI047561|AREC3|TrexBF sine oculis-related homeobox 4 homolog (Drosophila) 0.006410 0.426752 -0.788899 chr11-487 chr11 17111375 17111531 + 30.5 NA promoter-TSS (NM_178909) promoter-TSS (NM_178909) 139 NM_025443 66249 Mm.27831 NM_025443 ENSMUSG00000020116 Pno1 1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3 partner of NOB1 homolog (S. cerevisiae) 0.115385 0.649682 -3.127503 chr16-243 chr16 24229003 24229159 + 30.5 NA Intergenic Intergenic -79617 NM_178665 210126 Mm.450045 NM_001145952 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma 0.012821 0.522293 -6.715128 chr17-382 chr17 86846245 86846401 + 30.5 NA Intergenic Intergenic 9890 NM_029121 74915 Mm.159369 NM_029121 ENSMUSG00000053375 Atp6v1e2 4930500C14Rik|Atp6e1|E1 ATPase, H+ transporting, lysosomal V1 subunit E2 0.038462 0.535032 -4.050048 chrX-64 chrX 96875859 96876015 + 30.5 NA intron (NM_008446, intron 9 of 29) intron (NM_008446, intron 9 of 29) 47154 NM_008446 16571 Mm.383091 NM_008446 ENSMUSG00000034311 Kif4 AI323435|D330050K22Rik|Kns4 kinesin family member 4 0.012821 0.471338 -3.873976 chr11-524 chr11 62733095 62733251 + 30.5 NA Intergenic Intergenic -34214 NM_025496 66338 Mm.46166 NM_025496 ENSMUSG00000042200 Cdrt4 1700019I23Rik CMT1A duplicated region transcript 4 0.006410 0.503185 -8.004849 chr2-478 chr2 27446898 27447054 + 30.5 NA Intergenic Intergenic -52233 NM_011305 20181 Mm.24624 NM_011305 ENSMUSG00000015846 Rxra 9530071D11Rik|Nr2b1|RXRalpha1 retinoid X receptor alpha 0.000000 0.528662 -3.374737 chr16-261 chr16 37344819 37344975 + 30.5 NA Intergenic Intergenic -40700 NM_001114612 207227 Mm.403226 NM_001114611 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|MGC169507|tomosyn-2 syntaxin binding protein 5-like 0.000000 0.420382 -5.893940 chr4-548 chr4 125266183 125266339 + 30.5 NA Intergenic Intergenic 158353 NR_015560 72395 Mm.112888 XM_001476754 2610028E06Rik BB043107 RIKEN cDNA 2610028E06 gene 0.000000 0.452229 -7.464025 chr13-352 chr13 113806385 113806541 + 30.5 NA intron (NM_178746, intron 2 of 14) intron (NM_178746, intron 2 of 14) 24820 NM_178746 268706 Mm.480005 NM_178746 ENSMUSG00000047789 Slc38a9 4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09 solute carrier family 38, member 9 0.006410 0.452229 2.663250 chr19-143 chr19 9137056 9137212 + 30.5 NA intron (NM_001039959, intron 5 of 5) intron (NM_001039959, intron 5 of 5) 17867 NM_011681 22287 Mm.2258 NM_011681 ENSMUSG00000024653 Scgb1a1 CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg secretoglobin, family 1A, member 1 (uteroglobin) 0.012821 0.477707 -0.277390 chr8-384 chr8 109226915 109227071 + 30.5 NA 5' UTR (NM_021491, exon 1 of 9) 5' UTR (NM_021491, exon 1 of 9) 124 NM_021491 58994 Mm.23298 NM_021491 ENSMUSG00000031906 Smpd3 4631433G07Rik|AI427456|AW537966|fro|nSMase2 sphingomyelin phosphodiesterase 3, neutral 0.121795 0.694268 -3.677002 chr19-165 chr19 33495739 33495895 + 30.5 NA Intergenic Intergenic -37525 NM_001146342 67795 Mm.204591 XM_001481318 ENSMUSG00000071573 Rnls 6530404N21Rik|AI452315|AW060440|C10orf59 renalase, FAD-dependent amine oxidase 0.006410 0.312102 1.545275 chr12-491 chr12 105958781 105958937 + 30.5 NA Intergenic Intergenic -5362 NM_009747 12062 Mm.390475 NM_009747 ENSMUSG00000021070 Bdkrb2 B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2 bradykinin receptor, beta 2 0.000000 0.490446 -5.508322 chr19-137 chr19 5802692 5802774 + 30.5 NA promoter-TSS (NR_002847) promoter-TSS (NR_002847) -62 NR_002847 72289 Mm.298256 NR_002847 Malat1 2210401K01Rik|9430072K23Rik|AI647968 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 0.024390 0.469880 -0.292662 chr4-487 chr4 76382322 76382478 + 30.5 NA Intergenic Intergenic -316870 NM_011211 19266 Mm.403663 NM_001014288 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|MGC113757|MGC36851 protein tyrosine phosphatase, receptor type, D 0.000000 0.350318 -5.174946 chr12-390 chr12 15679170 15679326 + 30.5 NA Intergenic Intergenic 163087 NM_144551 217410 Mm.266679 XM_001474232 ENSMUSG00000020601 Trib2 AW319517|TRB-2|TRB2 tribbles homolog 2 (Drosophila) 0.006410 0.496815 -4.552863 chr8-328 chr8 11999048 11999204 + 30.5 NA Intergenic Intergenic 158634 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.000000 0.464968 -6.902402 chr6-336 chr6 30629741 30629897 + 30.5 NA intron (NM_031998, intron 2 of 10) intron (NM_031998, intron 2 of 10) 13873 NM_031998 83922 Mm.65389 NM_031998 ENSMUSG00000029790 Tsga14 1700017E11Rik|2810431D15Rik|AI449046|AI503610 testis specific gene A14 0.025641 0.452229 -2.813522 chr8-415 chr8 128331198 128331354 + 30.5 NA intron (NM_001081337, intron 13 of 20) intron (NM_001081337, intron 13 of 20) 47524 NM_001081337 244668 Mm.463243 NM_001081337 ENSMUSG00000001995 Sipa1l2 BC058408|mKIAA1389 signal-induced proliferation-associated 1 like 2 0.019231 0.477707 -3.579742 chr6-355 chr6 50614786 50614942 + 30.5 NA Intergenic Intergenic -30885 NM_021892 60531 Mm.157158 NM_021892 ENSMUSG00000029831 Npvf Rfrp neuropeptide VF precursor 0.019231 0.439490 -7.197413 chr6-342 chr6 36911995 36912151 + 30.5 NA intron (NM_001081206, intron 21 of 33) intron (NM_001081206, intron 21 of 33) -170560 NM_008973 19242 Mm.279690 NM_008973 ENSMUSG00000029838 Ptn HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1 pleiotrophin 0.006410 0.426752 -0.292662 chr8-340 chr8 24273338 24273494 + 30.5 NA Intergenic CpG -2217 NM_001122820 64933 Mm.390023 NM_001122820 ENSMUSG00000031539 Ap3m2 5830445E16Rik|AP-3B adaptor-related protein complex 3, mu 2 subunit 0.051282 0.496815 1.499668 chr3-386 chr3 69349535 69349691 + 30.5 NA Intergenic (TCCTG)n|Simple_repeat|Simple_repeat 39266 NM_027843 71619 Mm.98122 XM_130919 ENSMUSG00000027783 Arl14 9130014L17Rik|Arf7|MGC129454|MGC129455 ADP-ribosylation factor-like 14 0.000000 0.509554 -3.700038 chr4-500 chr4 89018934 89019090 + 30.5 NA Intergenic Intergenic -161203 NM_175647 242523 Mm.130167 NM_175647 ENSMUSG00000043753 Dmrta1 Dmrt4 doublesex and mab-3 related transcription factor like family A1 0.006410 0.464968 -6.648231 chr19-183 chr19 58271010 58271166 + 30.5 NA Intergenic Intergenic 236628 NM_010279 14585 Mm.88367 NM_010279 ENSMUSG00000025089 Gfra1 AU042498 glial cell line derived neurotrophic factor family receptor alpha 1 0.006410 0.445860 -2.344782 chr11-591 chr11 102795505 102795661 + 30.5 NA Intergenic Intergenic -33032 NM_011795 23829 Mm.478512 NM_011795 ENSMUSG00000045532 C1ql1 C1qrf|CRF|gliacolin complement component 1, q subcomponent-like 1 0.012821 0.471338 -2.877286 chr9-434 chr9 44523906 44523917 + 30.5 NA promoter-TSS (NM_023831) promoter-TSS (NM_023831) -92 NM_023831 76568 Mm.278597 NM_023831 ENSMUSG00000002031 Ift46 1500035H01Rik|AA408110|AI663846|R75047|c11orf2 intraflagellar transport 46 homolog (Chlamydomonas) 0.090909 0.583333 -10000000000.000000 chr19-179 chr19 54599910 54600066 + 30.5 NA Intergenic Intergenic 501495 NM_007417 11551 Mm.235195 NM_007417 ENSMUSG00000033717 Adra2a AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR adrenergic receptor, alpha 2a 0.019231 0.420382 -3.307730 chr10-329 chr10 19646138 19646294 + 30.5 NA intron (NM_008580, intron 1 of 29) intron (NM_008580, intron 1 of 29) 22275 NM_008580 26408 Mm.6595 NM_008580 ENSMUSG00000071369 Map3k5 7420452D20Rik|ASK|ASK1|MAPKKK5|MGC141518|MGC141519|Mekk5 mitogen-activated protein kinase kinase kinase 5 0.012821 0.452229 -7.182139 chr13-347 chr13 111386753 111386909 + 30.5 NA intron (NM_023852, intron 1 of 4) intron (NM_023852, intron 1 of 4) 14253 NM_023852 67295 Mm.151600 NM_023852 ENSMUSG00000021700 Rab3c 2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886|MGC124069 RAB3C, member RAS oncogene family 0.006410 0.407643 -2.697426 chr16-239 chr16 21906206 21906362 + 30.5 NA intron (NM_001083894, intron 1 of 8) intron (NM_001083894, intron 1 of 8) 4510 NM_153404 239759 Mm.33192 NM_001083894 ENSMUSG00000044626 Liph C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1 lipase, member H 0.000000 0.350318 -4.269089 chr18-258 chr18 65151010 65151166 + 30.5 NA intron (NM_031881, intron 1 of 29) intron (NM_031881, intron 1 of 29) 2193 NM_031881 83814 Mm.98668 NM_001114386 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b neural precursor cell expressed, developmentally down-regulated gene 4-like 0.012821 0.503185 3.208961 chr6-426 chr6 118984696 118984852 + 30.5 NA intron (NM_001159535, intron 3 of 46) intron (NM_001159535, intron 3 of 46) 89034 NM_001159534 12288 Mm.436656 NM_001159533 ENSMUSG00000051331 Cacna1c Cav1.2|Cchl1a1 calcium channel, voltage-dependent, L type, alpha 1C subunit 0.006410 0.477707 8.800850 chr4-499 chr4 87913280 87913436 + 30.5 NA Intergenic MIRb|SINE|MIR -3201 NM_025760 66775 Mm.386788 NM_025760 ENSMUSG00000028497 Ptplad2 4933428I03Rik|HACD4 protein tyrosine phosphatase-like A domain containing 2 0.006410 0.452229 1.141080 chr14-182 chr14 97470605 97470761 + 30.5 NA Intergenic Intergenic -418006 NM_007826 13134 Mm.320593 NM_001038610 ENSMUSG00000055639 Dach1 AI182278|Dac|Dach|E130112M23Rik dachshund 1 (Drosophila) 0.012821 0.318471 -0.458957 chr2-604 chr2 151650810 151650966 + 30.5 NA Intergenic MTD|LTR|MaLR 8170 NR_035478 100316704 NR_035478 Mir1953 mmu-mir-1953 microRNA mir-1953 0.019231 0.490446 -0.095894 chr6-415 chr6 99565682 99565838 + 30.5 NA Intergenic Intergenic 66474 NM_025829 66892 Mm.32889 NM_025829 ENSMUSG00000030068 Eif4e3 1300018P11Rik|AI451927|eIF4E-3 eukaryotic translation initiation factor 4E member 3 0.038462 0.535032 6.268279 chr11-510 chr11 53928740 53928896 + 30.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -15528 NM_011031 18452 Mm.3705 NM_001136076 ENSMUSG00000018906 P4ha2 AA407196|C76437|P4hl procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide 0.019231 0.471338 -8.576144 chr14-184 chr14 98340070 98340226 + 30.5 NA Intergenic Intergenic 158324 NM_009769 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF Kruppel-like factor 5 0.025641 0.522293 5.469418 chr9-455 chr9 56114929 56115085 + 30.5 NA intron (NM_172924, intron 3 of 6) intron (NM_172924, intron 3 of 6) 101180 NM_172924 244895 Mm.473654 NM_172924 ENSMUSG00000074305 C230081A13Rik 1110049L02Rik|9530046P14|AA690169|BE132841|SGK269|mKIAA2002 RIKEN cDNA C230081A13 gene 0.000000 0.363057 -4.151023 chr5-571 chr5 23904617 23904773 + 30.5 NA intron (NM_029020, intron 1 of 15) intron (NM_029020, intron 1 of 15) 475 NM_029020 74610 Mm.283914 NM_029020 ENSMUSG00000028973 Abcb8 4833412N02Rik|AA409895 ATP-binding cassette, sub-family B (MDR/TAP), member 8 0.096154 0.630573 3.075527 chr4-510 chr4 100144704 100144860 + 30.5 NA Intergenic Intergenic -129828 NM_198037 320508 Mm.151962 NM_198037 ENSMUSG00000028532 Cachd1 1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573 cache domain containing 1 0.000000 0.375796 -5.846761 chr15-287 chr15 84351921 84352077 + 30.5 NA Intergenic Intergenic 33590 NM_177630 223732 Mm.6471 NM_177630 ENSMUSG00000046268 Ldoc1l BC058638|MGC73499|Mar6|Mart6 leucine zipper, down-regulated in cancer 1-like 0.019231 0.490446 -3.285413 chr7-378 chr7 129547491 129547647 + 30.5 NA Intergenic Intergenic 164559 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|MGC47139|mKIAA1351 WD repeat domain 11 0.012821 0.388535 0.528211 chr13-335 chr13 100316865 100317021 + 30.5 NA intron (NM_001004149, intron 1 of 4) intron (NM_001004149, intron 1 of 4) 31964 NM_001004149 238803 Mm.343207 NM_001004149 ENSMUSG00000050919 Zfp366 DC-SCRIPT|MGC99415|Znf366 zinc finger protein 366 0.006410 0.401274 2.774507 chr13-318 chr13 69241276 69241432 + 30.5 NA intron (NM_153534, intron 4 of 24) intron (NM_153534, intron 4 of 24) 176545 NM_027035 69315 Mm.272795 XM_127414 ENSMUSG00000021534 1700001L19Rik - RIKEN cDNA 1700001L19 gene 0.000000 0.452229 -3.179567 chr5-560 chr5 9414466 9414622 + 30.5 NA intron (NM_172706, intron 3 of 21) intron (NM_172706, intron 3 of 21) 32835 NR_030537 100124492 NR_030537 Mir879 Mirn879|mmu-mir-879 microRNA 879 0.000000 0.426752 -1.032089 chr2-584 chr2 127628528 127628684 + 30.5 NA intron (NM_028765, intron 9 of 17) intron (NM_028765, intron 9 of 17) 82538 NM_028765 74121 Mm.244835 NM_028765 ENSMUSG00000027380 Acoxl 1200014P05Rik|AV025673 acyl-Coenzyme A oxidase-like 0.000000 0.433121 4.072185 chr13-315 chr13 63602950 63603106 + 30.5 NA Intergenic Intergenic -28286 NM_008957 19206 Mm.228798 NM_008957 ENSMUSG00000021466 Ptch1 A230106A15Rik|Ptc|Ptc1|Ptch|mes patched homolog 1 0.019231 0.433121 -2.182404 chr5-569 chr5 23858011 23858167 + 30.5 NA intron (NM_013569, intron 2 of 14) intron (NM_013569, intron 2 of 14) 3580 NM_013569 16511 Mm.6539 NM_013569 ENSMUSG00000038319 Kcnh2 AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b potassium voltage-gated channel, subfamily H (eag-related), member 2 0.025641 0.522293 -6.855964 chr17-364 chr17 48812362 48812518 + 30.5 NA Intergenic Intergenic -33913 NR_033486 100415784 Mm.400421 NR_033486 LOC100415784 - hypothetical LOC100415784 0.019231 0.414013 -6.617292 chr11-608 chr11 113790472 113790628 + 30.5 NA intron (NM_172800, intron 1 of 44) intron (NM_172800, intron 1 of 44) 91491 NM_172800 237979 Mm.401394 NM_172800 ENSMUSG00000041592 Sdk2 4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514 sidekick homolog 2 (chicken) 0.012821 0.566879 -4.764231 chr5-730 chr5 147386907 147387063 + 30.5 NA promoter-TSS (NM_009087) promoter-TSS (NM_009087) -64 NM_080795 140887 Mm.272203 NM_080795 ENSMUSG00000016520 Lnx2 9630046H24|AW209022 ligand of numb-protein X 2 0.089744 0.643312 -5.508620 chr5-667 chr5 120249530 120249686 + 30.5 NA Intergenic Intergenic -127521 NM_028762 74111 Mm.41022 NM_028762 ENSMUSG00000029594 Rbm19 1200009A02Rik|AV302714|KIAA0682|NPO RNA binding motif protein 19 0.032051 0.490446 -9.483518 chr4-594 chr4 153193768 153193924 + 30.5 NA intron (NM_001177995, intron 5 of 15) intron (NM_001177995, intron 5 of 15) -50151 NM_001112744 230972 Mm.38481 XM_149562 ENSMUSG00000029032 Arhgef16 - Rho guanine nucleotide exchange factor (GEF) 16 0.000000 0.515924 -4.213893 chr5-717 chr5 140717306 140717462 + 30.5 NA Intergenic B4|SINE|B4 -40698 NM_021528 59031 Mm.28934 NM_021528 ENSMUSG00000036599 Chst12 AI595374|C4S-2|C4ST2 carbohydrate sulfotransferase 12 0.019231 0.515924 -0.400395 chr6-329 chr6 5758613 5758769 + 30.5 NA intron (NM_001191026, intron 6 of 16) intron (NM_001191026, intron 6 of 16) 83053 NM_001191026 13426 Mm.20893 NM_001191023 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 0.012821 0.490446 -1.538865 chr17-360 chr17 46921452 46921608 + 30.5 NA intron (NM_145489, intron 2 of 4) intron (NM_145489, intron 2 of 4) -20964 NM_029296 75462 Mm.46129 NM_001172091 ENSMUSG00000047150 1700001C19Rik - RIKEN cDNA 1700001C19 gene 0.019231 0.477707 -4.629728 chr1-700 chr1 121106240 121106396 + 30.5 NA Intergenic Intergenic 143476 NM_008381 16324 Mm.3092 NM_008381 ENSMUSG00000037035 Inhbb - inhibin beta-B 0.006410 0.515924 -4.763052 chr10-393 chr10 85414269 85414425 + 30.5 NA intron (NM_177772, intron 7 of 15) intron (NM_177772, intron 7 of 15) -26755 NM_145422 28088 Mm.9257 NM_145422 ENSMUSG00000001783 D10Wsu52e AI255213|AI463255|HSPC117 DNA segment, Chr 10, Wayne State University 52, expressed 0.006410 0.369427 -4.682728 chr13-301 chr13 53815741 53815897 + 30.5 NA Intergenic Intergenic 249460 NM_010076 13488 Mm.54161 NM_010076 ENSMUSG00000021478 Drd1a C030036C15Rik|Drd-1|Drd1|Gpcr15 dopamine receptor D1A 0.006410 0.503185 -0.292662 chr11-490 chr11 21094937 21095093 + 30.5 NA Intergenic Intergenic -43876 NM_139061 245944 Mm.170103 NM_139061 ENSMUSG00000020128 Vps54 5330404P15Rik|Hcc8|Vps54l|mSLP8|wr vacuolar protein sorting 54 (yeast) 0.000000 0.496815 -7.325917 chr3-469 chr3 156214004 156214160 + 30.5 NA Intergenic RMER6D|LTR|ERVK -283004 NM_001039094 320840 Mm.317293 NM_001039094 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra|mKIAA3001 neuronal growth regulator 1 0.006410 0.407643 1.591599 chr1-759 chr1 166994748 166994904 + 30.5 NA intron (NM_032005, intron 1 of 7) intron (NM_032005, intron 1 of 7) 2622 NM_032005 83993 Mm.190649 NM_032005 ENSMUSG00000026572 Tbx19 AU019250|D1Ertd754e|Tpit T-box 19 0.019231 0.509554 -8.055333 chr19-182 chr19 57967963 57968119 + 30.5 NA intron (NM_181415, intron 26 of 28) intron (NM_181415, intron 26 of 28) 303758 NM_181415 226255 Mm.245340 NM_181415 ENSMUSG00000054843 Atrnl1 AI504415|AW555641|Alp|Atrnl|Atrnlp attractin like 1 0.000000 0.388535 -0.371035 chr15-275 chr15 77072057 77072213 + 30.5 NA intron (NM_175387, intron 1 of 12) intron (NM_175387, intron 1 of 12) 62173 NM_001110827 93686 Mm.202774 NM_001110827 ENSMUSG00000033565 Rbm9 2810460A15Rik|AA407676|AI118529|Fbm2|Fxh|Hrnbp2 RNA binding motif protein 9 0.012821 0.407643 -1.221143 chr4-576 chr4 149842534 149842690 + 30.5 NA intron (NM_011910, intron 1 of 3) intron (NM_011910, intron 1 of 3) 1716 NM_011910 24111 Mm.89984 NM_011910 ENSMUSG00000028963 Uts2 MGC130253|MGC130254|UII|Ucn2|prepro-UII urotensin 2 0.006410 0.528662 -7.376273 chr1-792 chr1 190539226 190539382 + 30.5 NA intron (NM_021408, intron 54 of 70) intron (NM_021408, intron 54 of 70) 169324 NM_172650 226823 Mm.471891 NM_172650 ENSMUSG00000026608 Kctd3 4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45 potassium channel tetramerisation domain containing 3 0.006410 0.369427 -1.766448 chr2-546 chr2 76512996 76513091 + 30.5 NA exon (NM_028004, exon 186 of 192) exon (NM_028004, exon 186 of 192) 36890 NM_031256 83435 Mm.470359 NM_031256 ENSMUSG00000002733 Plekha3 FAPP1 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 0.052632 0.500000 -5.945961 chr14-172 chr14 64043717 64043873 + 30.5 NA intron (NM_018788, intron 1 of 6) intron (NM_018788, intron 1 of 6) 8421 NM_018788 54616 Mm.103748 NM_018788 ENSMUSG00000021978 Extl3 2900009G18Rik|AU040105|Ext1l|KIAA0519|mKIAA0519 exostoses (multiple)-like 3 0.012821 0.503185 3.557602 chr1-784 chr1 185827880 185828036 + 30.5 NA Intergenic Intergenic 92242 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5 dual specificity phosphatase 10 0.019231 0.452229 -0.005099 chr5-580 chr5 34576538 34576694 + 30.5 NA intron (NM_001015039, intron 1 of 12) intron (NM_001015039, intron 1 of 12) 28565 NM_001015039 231125 Mm.113388 NM_001015039 ENSMUSG00000037224 Zfyve28 9630058O20Rik|Gm146|mKIAA1643 zinc finger, FYVE domain containing 28 0.000000 0.388535 4.814579 chr1-752 chr1 164407164 164407320 + 30.5 NA promoter-TSS (NM_016796) promoter-TSS (NM_016796) -260 NM_016796 53330 Mm.10699 NM_016796 ENSMUSG00000026696 Vamp4 D1Ertd147e vesicle-associated membrane protein 4 0.128205 0.732484 6.790022 chr18-239 chr18 39165283 39165439 + 30.5 NA intron (NM_175164, intron 1 of 22) intron (NM_175164, intron 1 of 22) 46243 NM_175164 71302 Mm.329396 NM_175164 ENSMUSG00000036452 Arhgap26 1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621 Rho GTPase activating protein 26 0.006410 0.515924 -4.692811 chr10-323 chr10 3233135 3233291 + 30.5 NA Intergenic Intergenic -90142 NM_001033391 320495 Mm.331674 NM_001033391 ENSMUSG00000064065 Ipcef1 A130090K04Rik interaction protein for cytohesin exchange factors 1 0.000000 0.420382 -6.222971 chr1-699 chr1 120953220 120953376 + 30.5 NA Intergenic L1M5|LINE|L1 -72133 NM_001081125 14633 Mm.273292 NM_001081125 ENSMUSG00000048402 Gli2 AW546128 GLI-Kruppel family member GLI2 0.019231 0.522293 0.030124 chr15-244 chr15 37080238 37080394 + 30.5 NA Intergenic CpG -97308 NM_026496 252973 Mm.391911 NM_026496 ENSMUSG00000022286 Grhl2 0610015A08Rik|BOM|Tcfcp2l3 grainyhead-like 2 (Drosophila) 0.051282 0.554140 2.873756 chr2-481 chr2 28236088 28236244 + 30.5 NA Intergenic Intergenic -33783 NM_001005420 241289 Mm.330095 NM_001005420 ENSMUSG00000035829 Gm347 Kiaa0649|MGC99945|mKIAA0649 predicted gene 347 0.012821 0.509554 -4.374804 chr12-423 chr12 43008287 43008443 + 30.5 NA Intergenic Intergenic -1012191 NM_010733 16981 Mm.39913 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal 0.012821 0.356688 -5.571385 chr6-401 chr6 93041450 93041606 + 30.5 NA intron (NR_015530, intron 1 of 2) intron (NR_015530, intron 1 of 2) 135443 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.019231 0.509554 -2.232530 chr3-376 chr3 51290094 51290250 + 30.5 NA Intergenic Intergenic -22203 NM_009834 12457 Mm.86541 NM_009834 ENSMUSG00000023087 Ccrn4l AU043840|Ccr4|nocturnin CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.025641 0.535032 -0.482252 chr2-536 chr2 71254225 71254280 + 30.5 NA promoter-TSS (NM_025633) promoter-TSS (NM_025633) 76 NM_025633 66559 Mm.443051 NM_025633 ENSMUSG00000041921 Metapl1 2310066F24Rik|3110033D18Rik|AV117938|Map1d methionine aminopeptidase-like 1 0.145455 0.660714 -6.909850 chr9-422 chr9 24253875 24254031 + 30.5 NA promoter-TSS (NM_172920) promoter-TSS (NM_172920) -406 NM_172920 244745 Mm.38526 NM_172920 ENSMUSG00000043067 Dpy19l1 1100001I19Rik|6030402K12|AI225861|AW558481 dpy-19-like 1 (C. elegans) 0.108974 0.694268 -2.604326 chr7-366 chr7 118495732 118495888 + 30.5 NA intron (NM_019580, intron 1 of 5) intron (NM_019580, intron 1 of 5) 1077 NM_019580 56209 Mm.273142 NM_019580 ENSMUSG00000033917 Gde1 1200003M13Rik|Mir16|RGS16 glycerophosphodiester phosphodiesterase 1 0.006410 0.426752 -7.053777 chr10-365 chr10 76573872 76574028 + 30.5 NA intron (NM_009929, intron 2 of 41) intron (NM_009929, intron 2 of 41) -16529 NM_001109991 12822 Mm.4352 NM_001109991 ENSMUSG00000001435 Col18a1 endostatin collagen, type XVIII, alpha 1 0.006410 0.522293 -0.636472 chr13-341 chr13 109024936 109025092 + 30.5 NA Intergenic Intergenic -14203 NM_145456 67263 Mm.433838 XM_358311 ENSMUSG00000032846 Zswim6 2900036G02Rik|mKIAA1577 zinc finger, SWIM domain containing 6 0.025641 0.375796 -0.848730 chr2-602 chr2 146106113 146106269 + 30.5 NA intron (NM_001033348, intron 16 of 40) intron (NM_001033348, intron 16 of 40) 97254 NM_001033348 241694 Mm.222310 NM_001033348 ENSMUSG00000037110 Ralgapa2 A230067G21Rik|AS250|BC053994|KIAA1272|pp250 Ral GTPase activating protein, alpha subunit 2 (catalytic) 0.000000 0.414013 -4.646690 chr15-265 chr15 64488556 64488712 + 30.5 NA Intergenic Intergenic 263335 NM_009623 11514 Mm.1425 NM_009623 ENSMUSG00000022376 Adcy8 AC8|AW060868 adenylate cyclase 8 0.012821 0.484076 -1.245212 chr17-319 chr17 26121014 26121170 + 30.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -21472 NM_001081656 240055 Mm.390976 NM_001081656 ENSMUSG00000034413 Neurl1B C230078M08Rik|EG240055|MGC183766|MGC183777 neuralized homolog 1B (Drosophila) 0.006410 0.420382 -2.821774 chr2-485 chr2 31081665 31081821 + 30.5 NA intron (NM_019681, intron 1 of 7) intron (NM_019681, intron 1 of 7) 13812 NM_019681 14299 Mm.249318 NM_019681 ENSMUSG00000062661 Ncs1 9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1 neuronal calcium sensor 1 0.019231 0.535032 -3.612518 chr4-488 chr4 78255454 78255610 + 30.5 NA Intergenic Intergenic -2049928 NM_031202 22178 Mm.412291 NM_031202 ENSMUSG00000005994 Tyrp1 TRP-1|TRP1|Tyrp|b|brown|isa tyrosinase-related protein 1 0.000000 0.484076 -4.730464 chr1-725 chr1 145703825 145703981 + 30.5 NA Intergenic Intergenic 62464 NM_009061 19735 Mm.28262 NM_009061 ENSMUSG00000026360 Rgs2 GOS8 regulator of G-protein signaling 2 0.006410 0.541401 2.537833 chr11-534 chr11 69737193 69737349 + 30.5 NA promoter-TSS (NM_001166596) promoter-TSS (NM_001166596) 9 NM_001166596 276770 Mm.18026 NM_001166589 ENSMUSG00000078812 Eif5a AA410058|D19Wsu54e|Eif4d|Eif5a1|MGC6725 eukaryotic translation initiation factor 5A 0.147436 0.738854 -11.144192 chr1-600 chr1 33718355 33718511 + 30.5 NA intron (NM_133817, intron 10 of 14) intron (NM_133817, intron 10 of 14) -16137 NM_145392 213539 Mm.247037 NM_145392 ENSMUSG00000042215 Bag2 2610042A13Rik|BC016230|MGC36682 BCL2-associated athanogene 2 0.019231 0.414013 0.652261 chr4-481 chr4 61982424 61982580 + 30.5 NA exon (NM_138653, exon 6 of 7) exon (NM_138653, exon 6 of 7) 6059 NM_024257 72748 Mm.41506 NM_024257 ENSMUSG00000038422 Hdhd3 2810435D12Rik haloacid dehalogenase-like hydrolase domain containing 3 0.012821 0.528662 -4.547506 chr17-305 chr17 11033768 11033924 + 30.5 NA intron (NM_016694, intron 2 of 11) intron (NM_016694, intron 2 of 11) 350105 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 MGC130518|PRKN Parkinson disease (autosomal recessive, juvenile) 2, parkin 0.006410 0.515924 -4.985789 chr11-503 chr11 51599689 51599845 + 30.5 NA 5' UTR (NM_175255, exon 1 of 23) 5' UTR (NM_175255, exon 1 of 23) 490 NM_175255 77371 Mm.33878 NM_175255 ENSMUSG00000036391 Sec24a 9430090N21Rik|AI504915 Sec24 related gene family, member A (S. cerevisiae) 0.115385 0.726115 -3.135376 chr3-436 chr3 123500238 123500284 + 30.5 NA promoter-TSS (NR_028574) promoter-TSS (NR_028574) 97 NR_028574 69895 Mm.260791 NR_028574 Snhg8 1110065M07Rik|2010109N14Rik small nucleolar RNA host gene 8 0.065217 0.638298 -3.680030 chr1-633 chr1 63110823 63110979 + 30.5 NA promoter-TSS (NM_018796) promoter-TSS (NM_018796) 197 NM_145518 227197 Mm.290791 NM_001160038 ENSMUSG00000025968 Ndufs1 5830412M15Rik|9930026A05Rik|MGC19199|MGC7850 NADH dehydrogenase (ubiquinone) Fe-S protein 1 0.083333 0.624204 -3.995518 chr1-675 chr1 88353651 88353807 + 30.5 NA Intergenic Intergenic -4177 NM_008972 19231 Mm.19187 NM_008972 ENSMUSG00000026238 Ptma MGC102090|MGC103390|Thym prothymosin alpha 0.012821 0.624204 -3.470102 chr7-391 chr7 141020777 141020933 + 30.5 NA promoter-TSS (NM_145135) promoter-TSS (NM_145135) -599 NM_145135 107702 Mm.279485 NM_001172100 ENSMUSG00000038650 Rnh1 AW546468|C80305|RNH ribonuclease/angiogenin inhibitor 1 0.006410 0.464968 -1.973318 chr3-424 chr3 116654515 116654671 + 30.5 NA promoter-TSS (NM_008246) promoter-TSS (NM_008246) 88 NM_008246 15247 Mm.449312 NM_008246 ENSMUSG00000027958 Hiat1 MGC144858 hippocampus abundant gene transcript 1 0.153846 0.777070 -6.522048 chr8-360 chr8 60633490 60633646 + 30.5 NA Intergenic Intergenic -88371 NM_144731 108150 Mm.62886 NM_001167981 ENSMUSG00000031608 Galnt7 AI225872 UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 0.012821 0.573248 -3.142020 chr11-601 chr11 108800725 108800881 + 30.5 NA Intergenic Intergenic 64365 NM_015732 12006 Mm.71710 NM_015732 ENSMUSG00000000142 Axin2 Axi1|Axil|Conductin axin2 0.012821 0.509554 -6.436779 chr5-589 chr5 39726214 39726370 + 30.5 NA Intergenic Intergenic 206588 NM_010474 15476 Mm.12559 NM_010474 ENSMUSG00000051022 Hs3st1 3-Ost|D5Wsu110e|Hsg3ost heparan sulfate (glucosamine) 3-O-sulfotransferase 1 0.012821 0.452229 -1.349535 chr3-456 chr3 147919010 147919166 + 30.5 NA Intergenic Intergenic 972933 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.006410 0.363057 -6.336052 chr6-435 chr6 134072669 134072825 + 30.5 NA intron (NM_007961, intron 1 of 7) intron (NM_007961, intron 1 of 7) 71348 NM_007961 14011 Mm.269995 NM_007961 ENSMUSG00000030199 Etv6 AW123102|AW557856|Tel ets variant gene 6 (TEL oncogene) 0.012821 0.445860 -5.329329 chr15-249 chr15 41228264 41228420 + 30.5 NA Intergenic Intergenic -49213 NM_001130166 170719 Mm.254267 NM_001130163 ENSMUSG00000022307 Oxr1 2210416C20Rik|C7|C7B|MGC103081|MGC107466 oxidation resistance 1 0.006410 0.369427 -3.157514 chr6-399 chr6 92814033 92814189 + 30.5 NA intron (NM_175314, intron 18 of 29) intron (NM_175314, intron 18 of 29) 52834 NM_175314 101401 Mm.257557 NM_175314 Adamts9 1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9 0.006410 0.445860 -3.646072 chr12-506 chr12 112300864 112301020 + 30.5 NA intron (NM_011625, intron 4 of 16) intron (NM_011625, intron 4 of 16) 38865 NM_026752 68520 Mm.390497 NM_026752 ENSMUSG00000021286 Zfyve21 1110013H04Rik|AW558780|C85416 zinc finger, FYVE domain containing 21 0.019231 0.566879 -2.523620 chr4-542 chr4 120517688 120517844 + 30.5 NA Intergenic Intergenic -2884 NM_133716 69780 Mm.271819 NM_133716 ENSMUSG00000032870 Smap2 1810031K02Rik|AA408614|Smap1l stromal membrane-associated GTPase-activating protein 2 0.012821 0.420382 -5.574519 chr19-157 chr19 27293893 27294049 + 30.5 NA intron (NM_001161420, intron 1 of 17) intron (NM_001161420, intron 1 of 17) 9855 NM_001161420 22359 Mm.4141 NM_001161420 ENSMUSG00000024924 Vldlr AA408956|AI451093|AW047288 very low density lipoprotein receptor 0.012821 0.541401 -1.160810 chr9-465 chr9 59758556 59758712 + 30.5 NA Intergenic Intergenic 9335 NM_001101600 665389 Mm.335214 NM_001101600 Gm7616 EG665389 predicted gene 7616 0.044872 0.471338 1.336189 chr10-370 chr10 77871068 77871224 + 30.5 NA Intergenic Intergenic -3069 NM_172134 216134 Mm.206159 NM_172134 ENSMUSG00000032788 Pdxk 2310036D04Rik|AA119688|C77999 pyridoxal (pyridoxine, vitamin B6) kinase 0.012821 0.554140 -3.318274 chr17-355 chr17 43489752 43489908 + 30.5 NA intron (NM_030598, intron 3 of 3) intron (NM_030598, intron 3 of 3) -52070 NM_032003 83965 Mm.451536 NM_001168620 ENSMUSG00000023960 Enpp5 AW061004|D17Abb1e|E-NPP 5|KIAA4152|mKIAA4152 ectonucleotide pyrophosphatase/phosphodiesterase 5 0.006410 0.382166 2.643679 chr3-366 chr3 28574365 28574521 + 30.5 NA intron (NM_001163007, intron 2 of 31) intron (NM_001163007, intron 2 of 31) 120157 NM_001163009 665113 Mm.126193 XM_001473602 ENSMUSG00000027692 Tnik 1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik|KIAA0551|MGC189819|MGC189859 TRAF2 and NCK interacting kinase 0.000000 0.452229 -5.597547 chr15-264 chr15 64131372 64131528 + 30.5 NA intron (NM_010026, intron 3 of 30) intron (NM_010026, intron 3 of 30) 81142 NM_010026 13196 Mm.277236 NM_010026 ENSMUSG00000022377 Asap1 AV239055|Ddef1|PAP|mKIAA1249|s19 ArfGAP with SH# domain, ankyrin repeat and PH domain1 0.019231 0.458599 -4.001245 chr5-643 chr5 101038908 101039064 + 30.5 NA promoter-TSS (NM_026826) promoter-TSS (NM_026826) -74 NM_026826 68735 Mm.25585 NM_026826 ENSMUSG00000016833 Mrps18c 1110037D14Rik mitochondrial ribosomal protein S18C 0.102564 0.624204 -4.976525 chr17-381 chr17 84176671 84176827 + 30.5 NA intron (NM_183021, intron 30 of 37) intron (NM_183021, intron 30 of 37) -80476 NM_001001806 12193 Mm.259321 NM_001001806 ENSMUSG00000045817 Zfp36l2 Brf2|ERF2|Tis11d zinc finger protein 36, C3H type-like 2 0.012821 0.407643 1.073378 chr9-515 chr9 113266843 113266999 + 30.5 NA Intergenic Intergenic 290036 NM_001164678 18571 Mm.29816 NM_001164677 ENSMUSG00000032504 Pdcd6ip AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375 programmed cell death 6 interacting protein 0.000000 0.579618 -3.978670 chr8-414 chr8 128295414 128295570 + 30.5 NA Intergenic Intergenic 83308 NM_001081337 244668 Mm.463243 NM_001081337 ENSMUSG00000001995 Sipa1l2 BC058408|mKIAA1389 signal-induced proliferation-associated 1 like 2 0.000000 0.579618 -3.607271 chr1-652 chr1 74065882 74066038 + 30.5 NA exon (NM_001170641, exon 8 of 12) exon (NM_001170641, exon 8 of 12) 7213 NM_001170641 435626 Mm.240447 NM_001034060 ENSMUSG00000061815 Rufy4 F930048N03Rik RUN and FYVE domain containing 4 0.006410 0.547771 -4.025640 chr14-163 chr14 46455544 46455700 + 30.5 NA Intergenic Intergenic 34689 NM_172599 218978 Mm.287279 NM_172599 ENSMUSG00000037526 Atg14 4832427M01|Atg14L|D14Ertd114e|D14Ertd436e|Kiaa0831 VATG14 autophagy related 14 homolog (S. cerevisiae) 0.019231 0.477707 7.175186 chr18-213 chr18 5691126 5691282 + 30.5 NA intron (NM_011546, intron 1 of 7) intron (NM_011546, intron 1 of 7) -98769 NR_033552 791318 Mm.84339 NR_033552 Gm10125 ENSMUSG00000063087 predicted gene 10125 0.006410 0.471338 -6.743512 chr5-597 chr5 53454020 53454176 + 30.5 NA intron (NM_172710, intron 9 of 23) intron (NM_172710, intron 9 of 23) 47602 NM_172710 231238 Mm.235020 NM_172710 ENSMUSG00000029189 Sel1l3 2310045A20Rik|AI429585|mKIAA0746 sel-1 suppressor of lin-12-like 3 (C. elegans) 0.019231 0.464968 2.643679 chr9-442 chr9 49117474 49117630 + 30.5 NA intron (NM_010077, intron 1 of 7) intron (NM_010077, intron 1 of 7) 24661 NM_010077 13489 Mm.41970 NM_010077 ENSMUSG00000032259 Drd2 D2R|Drd-2 dopamine receptor D2 0.000000 0.445860 -1.453709 chr10-339 chr10 39876966 39877122 + 30.5 NA Intergenic MuLV-int|LTR|ERV1 -45374 NM_001114332 72472 Mm.186778 NM_001114332 Slc16a10 2610103N14Rik|9830169E08|PRO0813|TAT1 solute carrier family 16 (monocarboxylic acid transporters), member 10 0.000000 0.535032 -2.447494 chr12-512 chr12 116577925 116578081 + 30.5 NA intron (NM_009511, intron 6 of 12) intron (NM_009511, intron 6 of 12) 58265 NM_009511 22355 Mm.395245 NM_009511 ENSMUSG00000011171 Vipr2 VPAC2|VPAC2R|Vip2 vasoactive intestinal peptide receptor 2 0.019231 0.471338 -2.210859 chr1-614 chr1 43210393 43210549 + 30.5 NA Intergenic Intergenic -101964 NM_010212 14200 Mm.6799 NM_010212 ENSMUSG00000008136 Fhl2 C76204|SLIM3 four and a half LIM domains 2 0.006410 0.464968 2.434947 chr10-386 chr10 83175442 83175598 + 30.5 NA intron (NM_001145198, intron 2 of 5) intron (NM_001145198, intron 2 of 5) 22857 NM_001145198 69784 Mm.271188 XM_899407 1500009L16Rik 2700050C19Rik|OCC-1 RIKEN cDNA 1500009L16 gene 0.006410 0.401274 -3.550224 chr2-595 chr2 138160414 138160570 + 30.5 NA Intergenic Intergenic 190559 NM_145534 228662 Mm.153405 NM_001025431 ENSMUSG00000062098 Btbd3 MGC25591|mKIAA0952 BTB (POZ) domain containing 3 0.006410 0.433121 -1.247262 chr4-549 chr4 125824046 125824202 + 30.5 NA promoter-TSS (NM_133883) promoter-TSS (NM_133883) -117 NM_133883 100206 Mm.11285 NM_133883 ENSMUSG00000042558 Adprhl2 AI836109|Arh3 ADP-ribosylhydrolase like 2 0.076923 0.611465 -6.706950 chr9-413 chr9 14272365 14272521 + 30.5 NA Intergenic MTEa|LTR|MaLR 21428 NM_023153 66070 Mm.245938 NM_023153 ENSMUSG00000004096 Cwc15 0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1 CWC15 homolog (S. cerevisiae) 0.006410 0.452229 -4.958201 chr5-725 chr5 143051479 143051635 + 30.5 NA intron (NM_001122730, intron 4 of 29) intron (NM_001122730, intron 4 of 29) 30970 NM_178242 231861 Mm.480618 XM_355727 ENSMUSG00000039477 Tnrc18 BC025631|EG381742|MGC59613|Zfp469 trinucleotide repeat containing 18 0.006410 0.509554 -8.437276 chr9-494 chr9 83112255 83112411 + 30.5 NA Intergenic RSINE1|SINE|B4 125484 NM_027448 75782 Mm.199698 NM_027448 ENSMUSG00000032258 Lca5 4930431B11Rik|5730406O13Rik|AV274874|ORF64 Leber congenital amaurosis 5 (human) 0.012821 0.509554 -8.459643 chr11-571 chr11 96868748 96868904 + 30.5 NA intron (NM_001081434, intron 3 of 22) intron (NM_001081434, intron 3 of 22) 1917 NM_001081434 71240 Mm.190450 NM_001081434 ENSMUSG00000038534 Osbpl7 4933437E18Rik oxysterol binding protein-like 7 0.012821 0.535032 -4.339829 chr13-277 chr13 28798689 28798845 + 30.5 NA Intergenic Intergenic 162380 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.006410 0.407643 2.746919 chr11-611 chr11 114658405 114658561 + 30.5 NA Intergenic RSINE1|SINE|B4 -9138 NM_001110337 70355 Mm.242413 NM_001110337 ENSMUSG00000051043 Gprc5c 1110028I06Rik|3200002M13Rik|MGC11976|MGC6786|Raig3 G protein-coupled receptor, family C, group 5, member C 0.006410 0.490446 -1.605731 chr2-490 chr2 32645307 32645463 + 30.5 NA intron (NM_001113569, intron 2 of 19) intron (NM_001113569, intron 2 of 19) 23856 NM_009295 20910 Mm.278865 NM_001113569 ENSMUSG00000026797 Stxbp1 AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1 syntaxin binding protein 1 0.025641 0.592357 -0.215356 chr18-226 chr18 18045080 18045236 + 30.5 NA Intergenic Intergenic -666658 NR_033607 664619 Mm.250005 NR_033607 4921533I20Rik - Riken cDNA 4921533I20 gene 0.000000 0.337580 -7.710505 chr18-233 chr18 35963488 35963644 + 30.5 NA intron (NM_133687, intron 1 of 2) intron (NM_133687, intron 1 of 2) 7775 NM_133687 67393 Mm.94560 NM_133687 ENSMUSG00000046668 Cxxc5 4930415K17Rik|MGC101987 CXXC finger 5 0.000000 0.541401 -4.262468 chr5-611 chr5 72503986 72504142 + 30.5 NA intron (NR_003966, intron 1 of 22) intron (NR_003966, intron 1 of 22) 21587 NM_153389 231287 Mm.441066 NM_153389 ENSMUSG00000046808 Atp10d 9830145H18Rik|ATPVD|D5Buc24e|MGC37731 ATPase, class V, type 10D 0.025641 0.496815 -0.219691 chr11-613 chr11 115229207 115229363 + 30.5 NA Intergenic Intergenic 6724 NM_027862 71679 Mm.371641 NM_027862 ENSMUSG00000034566 Atp5h 0610009D10Rik ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 0.044872 0.503185 0.749237 chr11-497 chr11 30886303 30886459 + 30.5 NA promoter-TSS (NM_026527) promoter-TSS (NM_026527) -16 NM_026527 68044 Mm.32656 NM_026527 ENSMUSG00000020309 Chac2 2510006C20Rik ChaC, cation transport regulator homolog 2 (E. coli) 0.044872 0.579618 1.695631 chrX-74 chrX 137439955 137440111 + 30.5 NA intron (NM_001007576, intron 1 of 19) intron (NM_001007576, intron 1 of 19) 3266 NM_001007576 245650 Mm.208511 NM_001007576 ENSMUSG00000042282 Gucy2f A930002I06|GC-F|GC2 guanylate cyclase 2f 0.000000 0.414013 -4.071437 chr4-568 chr4 141421918 141422074 + 30.5 NA intron (NM_001109685, intron 5 of 7) intron (NM_001109685, intron 5 of 7) 60288 NM_144531 71529 Mm.477412 NM_001109684 ENSMUSG00000040606 9030409G11Rik 2310007B04Rik|AI256607|AI666764|AW061099|Kaz|Kazrin RIKEN cDNA 9030409G11 gene 0.012821 0.560510 -3.542162 chr1-710 chr1 129603994 129604150 + 30.5 NA intron (NM_028399, intron 2 of 8) intron (NM_028399, intron 2 of 8) 2363 NM_028399 72949 Mm.392269 NM_028399 ENSMUSG00000026349 Ccnt2 2900041I18Rik|C81304|CycT2 cyclin T2 0.006410 0.388535 0.806597 chr10-406 chr10 93974577 93974733 + 30.5 NA intron (NM_172051, intron 1 of 3) intron (NM_172051, intron 1 of 3) 30000 NM_172051 319880 Mm.23047 NM_001168684 ENSMUSG00000020023 Tmcc3 AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 transmembrane and coiled coil domains 3 0.006410 0.388535 -5.974315 chr18-218 chr18 9376368 9376524 + 30.5 NA intron (NM_026484, intron 3 of 9) intron (NM_026484, intron 3 of 9) 73702 NM_026484 67974 Mm.376607 NM_026484 ENSMUSG00000024286 Ccny 1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik cyclin Y 0.000000 0.414013 0.996904 chr16-280 chr16 92376043 92376199 + 30.5 NA Intergenic Intergenic -10884 NM_172469 209195 Mm.44747 NM_172469 ENSMUSG00000022949 Clic6 5730466J16Rik|AL022908|AW045520|CLIC1L|Neuronatin chloride intracellular channel 6 0.019231 0.541401 8.346785 chr7-343 chr7 83986607 83986763 + 30.5 NA 3' UTR (NM_133722, exon 3 of 3) 3' UTR (NM_133722, exon 3 of 3) -23995 NM_030728 80982 Mm.160389 NM_030728 ENSMUSG00000052353 9930013L23Rik 12H19.01.T7|6330404C01Rik|AY007814 RIKEN cDNA 9930013L23 gene 0.025641 0.452229 4.559799 chr7-318 chr7 46055583 46055739 + 30.5 NA Intergenic Intergenic -7586 NM_011510 20927 Mm.259076 NM_011510 ENSMUSG00000040136 Abcc8 D930031B21Rik|SUR1|Sur ATP-binding cassette, sub-family C (CFTR/MRP), member 8 0.012821 0.426752 -0.254050 chr11-628 chr11 119574899 119575055 + 30.5 NA intron (NM_028898, intron 6 of 33) intron (NM_028898, intron 6 of 33) -154922 NM_001085498 208092 Mm.306673 XM_126613 ENSMUSG00000025371 Chmp6 2400004G01Rik chromatin modifying protein 6 0.000000 0.464968 -1.943508 chr12-451 chr12 81135024 81135180 + 30.5 NA intron (NM_134156, intron 1 of 20) intron (NM_134156, intron 1 of 20) 44109 NM_134156 109711 Mm.403477 NM_134156 ENSMUSG00000015143 Actn1 3110023F10Rik|Actn1a actinin, alpha 1 0.000000 0.426752 1.167401 chr14-179 chr14 91277972 91278128 + 30.5 NA Intergenic Lx6|LINE|L1 1493816 NM_001081377 211712 Mm.458162 NM_001081377 ENSMUSG00000055421 Pcdh9 1500001L12Rik|A730003J17Rik|AU021802|C530050I23Rik|C630029H24Rik|Gm1213|Gm297 protocadherin 9 0.000000 0.388535 6.339949 chr9-517 chr9 114870173 114870329 + 30.5 NA Intergenic RMER15|LTR|ERVL -45725 NM_148958 74486 Mm.458474 NM_148958 ENSMUSG00000040875 Osbpl10 4933433D06Rik|C820004B04Rik|OPR-10 oxysterol binding protein-like 10 0.000000 0.471338 -7.985719 chr6-430 chr6 121088687 121088843 + 30.5 NA Intergenic Intergenic -41537 NM_153396 194401 Mm.122399 XM_979045 ENSMUSG00000003178 Mical3 C130040D16Rik|KIAA0819|MICAL-3|mKIAA1364 microtubule associated monoxygenase, calponin and LIM domain containing 3 0.000000 0.515924 -3.706528 chr2-596 chr2 143402916 143403072 + 30.5 NA intron (NM_008792, intron 5 of 11) intron (NM_008792, intron 5 of 11) 151620 NM_009751 12075 Mm.275937 NM_009751 ENSMUSG00000027420 Bfsp1 - beaded filament structural protein 1, in lens-CP94 0.006410 0.458599 -1.380696 chr15-288 chr15 86016960 86017116 + 30.5 NA Intergenic Intergenic -3131 NM_145475 223753 Mm.222685 NM_145475 ENSMUSG00000035891 Cerk AI848610|D330016D08Rik|mKIAA1646 ceramide kinase 0.012821 0.573248 -3.832566 chr11-631 chr11 120249237 120249393 + 30.5 NA intron (NM_199469, intron 1 of 15) intron (NM_199469, intron 1 of 15) 4443 NM_199469 217365 Mm.309520 NM_001195023 ENSMUSG00000039703 Nploc4 AK129375|KIAA1499|Npl4|mKIAA1499 nuclear protein localization 4 homolog (S. cerevisiae) 0.019231 0.452229 8.443346 chr14-158 chr14 29630914 29631070 + 30.5 NA intron (NM_001166531, intron 15 of 21) intron (NM_001166531, intron 15 of 21) -23610 NM_028839 69179 Mm.143025 NM_028839 ENSMUSG00000006526 Tmem110 1810038N08Rik|2310014H19Rik|AW554125 transmembrane protein 110 0.006410 0.388535 -4.285807 chr6-379 chr6 83020116 83020272 + 30.5 NA promoter-TSS (NM_019752) promoter-TSS (NM_019752) 35 NM_019752 64704 Mm.21880 NM_019752 ENSMUSG00000068329 Htra2 AI481710|Omi|Prss25|mnd2 HtrA serine peptidase 2 0.083333 0.592357 2.909232 chr12-440 chr12 73898177 73898333 + 30.5 NA Intergenic Intergenic 39473 NM_011384 20476 Mm.57138 NM_011384 ENSMUSG00000021099 Six6 Optx2|Six9 sine oculis-related homeobox 6 homolog (Drosophila) 0.000000 0.477707 -3.778296 chr7-363 chr7 117408508 117408664 + 30.5 NA intron (NM_175645, intron 5 of 11) intron (NM_175645, intron 5 of 11) 236459 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.012821 0.503185 0.474618 chr10-373 chr10 79929170 79929326 + 30.5 NA intron (NM_026094, intron 20 of 27) intron (NM_026094, intron 20 of 27) 13005 NM_026094 67331 Mm.52511 NM_026094 ENSMUSG00000003341 Atp8b3 1700042F02Rik|1700056N23Rik|ATPIK|SAPLT ATPase, class I, type 8B, member 3 0.025641 0.496815 1.478888 chr8-355 chr8 47838299 47838455 + 30.5 NA Intergenic L1MD2|LINE|L1 -44889 NM_173789 234219 Mm.145631 NM_173789 ENSMUSG00000047171 Helt A830086M02|Hesl|Mgn|megane Hey-like transcription factor (zebrafish) 0.006410 0.401274 -2.866332 chr15-255 chr15 54554580 54554736 + 30.5 NA Intergenic Intergenic -21352 NM_010930 18133 Mm.5167 NM_010930 ENSMUSG00000037362 Nov C130088N23Rik|CCN3 nephroblastoma overexpressed gene 0.000000 0.388535 -7.654018 chr10-331 chr10 21473082 21473238 + 30.5 NA Intergenic Intergenic -98439 NM_001161845 20393 Mm.28405 NM_001161845 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 0.019231 0.420382 -2.052979 chr11-519 chr11 59781522 59781678 + 30.5 NA promoter-TSS (NM_009026) promoter-TSS (NM_009026) -463 NM_009026 19416 Mm.3903 NM_009026 ENSMUSG00000049892 Rasd1 Dexras1 RAS, dexamethasone-induced 1 0.051282 0.605096 -3.183793 chr1-722 chr1 137066552 137066708 + 30.5 NA Intergenic Intergenic 8253 NM_001163131 13710 Mm.441439 NM_001163131 ENSMUSG00000003051 Elf3 ESE-1|ESX|jen E74-like factor 3 0.025641 0.484076 -3.700039 chr12-404 chr12 27780561 27780717 + 30.5 NA Intergenic MLT2B2|LTR|ERVL 148347 NM_009234 20666 Mm.466344 NM_009234 ENSMUSG00000063632 Sox11 1110038H03Rik|6230403H02Rik|AI836553|end1 SRY-box containing gene 11 0.000000 0.343949 -0.149026 chr4-570 chr4 144225408 144225564 + 30.5 NA Intergenic PB1D10|SINE|Alu 65663 NM_011303 20148 Mm.14063 NM_001172424 ENSMUSG00000066026 Dhrs3 Rsdr1|retSDR1 dehydrogenase/reductase (SDR family) member 3 0.006410 0.401274 1.306082 chr5-668 chr5 120298387 120298543 + 30.5 NA Intergenic RMER19B|LTR|ERVK -78664 NM_028762 74111 Mm.41022 NM_028762 ENSMUSG00000029594 Rbm19 1200009A02Rik|AV302714|KIAA0682|NPO RNA binding motif protein 19 0.006410 0.471338 -3.517349 chr4-547 chr4 124908420 124908576 + 30.5 NA Intergenic Intergenic -84636 NM_001081097 14807 Mm.40896 NM_001081097 ENSMUSG00000001985 Grik3 9630027E11|GluR7-3|Glur-7|Glur7 glutamate receptor, ionotropic, kainate 3 0.012821 0.528662 -3.279548 chr9-509 chr9 106239562 106239718 + 30.5 NA Intergenic Intergenic 12908 NM_153459 235584 Mm.275584 NM_153459 ENSMUSG00000053716 Dusp7 AU015694|Mkpx|Pyst2 dual specificity phosphatase 7 0.032051 0.535032 -4.204983 chr1-654 chr1 74642916 74643072 + 30.5 NA Intergenic RLTR9C|LTR|ERVK -3786 NM_024264 104086 Mm.85083 NM_024264 ENSMUSG00000026170 Cyp27a1 1300013A03Rik|Cyp27 cytochrome P450, family 27, subfamily a, polypeptide 1 0.012821 0.509554 -3.925148 chr13-275 chr13 28438200 28438356 + 30.5 NA Intergenic Intergenic 288330 NM_023746 28078 Mm.155058 NM_023746 ENSMUSG00000017064 Prl5a1 1600013P04Rik|D13Wsu14e|PLP-L|Prlpl|RP23-231P12.2 prolactin family 5, subfamily a, member 1 0.012821 0.464968 1.591599 chr1-801 chr1 195244811 195244967 + 30.5 NA Intergenic Intergenic -36635 NR_029592 387201 NR_029592 Mir205 Mirn205|mmu-mir-205 microRNA 205 0.006410 0.420382 0.907095 chr12-470 chr12 91957826 91957982 + 30.5 NA Intergenic MLT1A0|LTR|MaLR 37302 NM_031391 83602 Mm.275728 NM_031391 ENSMUSG00000020962 Gtf2a1 6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b general transcription factor II A, 1 0.038462 0.439490 -3.728225 chr7-305 chr7 25611126 25611282 + 30.5 NA intron (NM_009999, intron 1 of 8) intron (NM_009999, intron 1 of 8) 4781 NM_009999 13088 Mm.218749 NM_009998 ENSMUSG00000030483 Cyp2b10 Cyp2b|Cyp2b20|p16 cytochrome P450, family 2, subfamily b, polypeptide 10 0.006410 0.382166 -2.433618 chr2-550 chr2 79352931 79353087 + 30.5 NA Intergenic Intergenic -83254 NM_080558 70599 Mm.272881 NM_080558 ENSMUSG00000027007 Ssfa2 5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927 sperm specific antigen 2 0.000000 0.414013 -3.579742 chr16-241 chr16 23749132 23749288 + 30.5 NA Intergenic Intergenic 56983 NM_009215 20604 Mm.2453 NM_009215 ENSMUSG00000004366 Sst SOM|SRIF|SS|Smst somatostatin 0.006410 0.503185 0.722906 chr4-555 chr4 133374614 133374770 + 30.5 NA promoter-TSS (NM_026257) promoter-TSS (NM_026257) 18 NM_026257 67586 Mm.282029 NM_026257 ENSMUSG00000012126 Ubxn11 4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5 UBX domain protein 11 0.096154 0.643312 -3.995518 chr1-667 chr1 80188058 80188214 + 30.5 NA intron (NM_016716, intron 2 of 15) intron (NM_016716, intron 2 of 15) 31318 NM_016716 26554 Mm.12665 NM_016716 ENSMUSG00000004364 Cul3 AI467304|AW146203|mKIAA0617 cullin 3 0.000000 0.394904 -3.188235 chr14-193 chr14 121279112 121279268 + 30.5 NA intron (NM_080556, intron 9 of 16) intron (NM_080556, intron 9 of 16) 36929 NM_080556 68059 Mm.275191 NM_080556 ENSMUSG00000025544 Tm9sf2 1500001N15Rik|AA536814|D14Ertd64e|P76 transmembrane 9 superfamily member 2 0.012821 0.426752 -5.039195 chr13-351 chr13 113486741 113486897 + 30.5 NA intron (NM_001168403, intron 9 of 11) intron (NM_001168403, intron 9 of 11) 77424 NM_001168404 77318 Mm.159895 NM_001168403 ENSMUSG00000049985 Ankrd55 C030011J08Rik ankyrin repeat domain 55 0.019231 0.579618 -3.301542 chr7-375 chr7 124382780 124382936 + 30.5 NA Intergenic Intergenic -777150 NM_001145759 75861 Mm.349600 NM_001145759 4930571K23Rik AI428146 RIKEN cDNA 4930571K23 gene 0.000000 0.503185 -4.157831 chr2-523 chr2 59104743 59104899 + 30.5 NA intron (NM_175464, intron 4 of 20) intron (NM_175464, intron 4 of 20) 143133 NM_175464 227937 Mm.260938 NM_026361 ENSMUSG00000026991 Pkp4 5031422I09Rik|9430019K17Rik|Armrp|MGC100358|MGC105166|p0071 plakophilin 4 0.012821 0.414013 -3.039560 chr15-241 chr15 35264538 35264694 + 30.5 NA Intergenic Intergenic 23916 NM_054049 107587 Mm.46336 NM_054049 ENSMUSG00000022330 Osr2 5430409I15Rik|Osr2A|Osr2B odd-skipped related 2 (Drosophila) 0.012821 0.503185 -0.251180 chr4-553 chr4 130312892 130313048 + 30.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 96510 NM_010769 17180 Mm.271796 NM_010769 ENSMUSG00000040533 Matn1 CMP|Crtm|Mat1|matrilin-1 matrilin 1, cartilage matrix protein 0.006410 0.445860 -6.380788 chr4-479 chr4 59859751 59859907 + 30.5 NA Intergenic Intergenic 18080 NM_001013577 66209 Mm.443220 NM_001013577 ENSMUSG00000038544 1110054O05Rik 2610312O17Rik|AA399876|Ssbip1 RIKEN cDNA 1110054O05 gene 0.006410 0.445860 -0.622578 chr2-500 chr2 37244985 37245141 + 30.5 NA promoter-TSS (NM_001100591) promoter-TSS (NM_001100591) -151 NM_001100591 319817 Mm.477223 XM_130233 ENSMUSG00000075376 Rc3h2 2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164 ring finger and CCCH-type zinc finger domains 2 0.076923 0.611465 4.296466 chr4-561 chr4 136089914 136090070 + 30.5 NA intron (NM_010142, intron 1 of 15) intron (NM_010142, intron 1 of 15) 18019 NM_010142 13844 Mm.250981 NM_010142 ENSMUSG00000028664 Ephb2 Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5 Eph receptor B2 0.070513 0.566879 -4.582152 chr1-743 chr1 160612551 160612707 + 30.5 NA intron (NM_001085376, intron 16 of 21) intron (NM_001085376, intron 16 of 21) 181486 NM_001085376 23850 Mm.458621 XM_001472777 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe pappalysin 2 0.006410 0.369427 -3.540225 chr17-363 chr17 48033134 48033290 + 30.5 NA Intergenic MLT1B|LTR|MaLR 112745 NM_152823 76589 Mm.311629 NM_152823 ENSMUSG00000043592 Unc5cl 2510009H09Rik|BB155270|Zud unc-5 homolog C (C. elegans)-like 0.019231 0.503185 -4.582382 chr10-346 chr10 43440567 43440723 + 30.5 NA Intergenic Intergenic 149506 NM_001081054 76563 Mm.5904 NM_001081054 ENSMUSG00000019863 Qrsl1 2700038P16Rik|C80053|GatA glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 0.006410 0.541401 -4.426816 chr2-632 chr2 168490571 168490727 + 30.5 NA Intergenic Intergenic -32243 NM_175303 99377 Mm.474972 NM_175303 ENSMUSG00000027547 Sall4 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20 sal-like 4 (Drosophila) 0.051282 0.605096 3.179486 chr18-240 chr18 39356534 39356690 + 30.5 NA intron (NM_175164, intron 14 of 22) intron (NM_175164, intron 14 of 22) 237494 NM_175164 71302 Mm.329396 NM_175164 ENSMUSG00000036452 Arhgap26 1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621 Rho GTPase activating protein 26 0.012821 0.458599 -4.367418 chr8-399 chr8 124149163 124149319 + 30.5 NA Intergenic Intergenic 135580 NM_008024 14241 Mm.5111 NM_008024 Foxl1 FREAC7|Fkh6|fkh-6 forkhead box L1 0.032051 0.515924 2.932571 chr2-512 chr2 52008036 52008192 + 30.5 NA exon (NM_010889, exon 123 of 157) exon (NM_010889, exon 123 of 157) 113269 NM_175238 51869 Mm.254530 NM_175238 ENSMUSG00000036202 Rif1 5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e Rap1 interacting factor 1 homolog (yeast) 0.025641 0.420382 -5.601185 chr5-681 chr5 125755249 125755330 + 30.5 NA Intergenic CpG -10044 NM_030210 78894 Mm.431573 NM_030210 ENSMUSG00000029482 Aacs 2210408B16Rik|SUR5 acetoacetyl-CoA synthetase 0.123457 0.670732 -11.794471 chr2-557 chr2 91755982 91756138 + 30.5 NA intron (NM_138306, intron 1 of 30) intron (NM_138306, intron 1 of 30) -4873 NM_001166597 104418 Mm.314923 NM_001166597 ENSMUSG00000040479 Dgkz E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z] diacylglycerol kinase zeta 0.012821 0.509554 -3.373079 chr4-505 chr4 97877894 97878050 + 30.5 NA Intergenic Lx6|LINE|L1 -2689 NM_053157 94043 Mm.331719 NM_053157 ENSMUSG00000028563 Tm2d1 2310026L18Rik|AA990549|Bbp TM2 domain containing 1 0.000000 0.343949 -4.541600 chr17-376 chr17 70658629 70658785 + 30.5 NA intron (NM_177639, intron 6 of 11) intron (NM_177639, intron 6 of 11) 92927 NM_001164077 21815 Mm.101034 NM_001164074 ENSMUSG00000047407 Tgif1 AA959811|AI462167|Tgif TGFB-induced factor homeobox 1 0.032051 0.503185 2.513098 chr5-651 chr5 107740307 107740463 + 30.5 NA exon (NM_001007574, exon 2 of 6) exon (NM_001007574, exon 2 of 6) 2305 NM_001168557 231570 Mm.261891 XM_620237 A830010M20Rik AI849226|Kiaa1107|mKIAA1107 RIKEN cDNA A830010M20 gene 0.025641 0.433121 -3.541013 chr1-750 chr1 162447122 162447278 + 30.5 NA intron (NM_013862, intron 13 of 20) intron (NM_013862, intron 13 of 20) -32770 NM_001146330 620246 Mm.478780 XM_885170 Gpr52 EG620246 G protein-coupled receptor 52 0.000000 0.420382 -1.405349 chr10-411 chr10 95652910 95653066 + 30.5 NA Intergenic Intergenic 282638 NM_001001932 216238 Mm.476895 NM_001001932 ENSMUSG00000036499 Eea1 A430109M19Rik|B230358H09Rik|ZFYVE2 early endosome antigen 1 0.006410 0.433121 -2.995517 chr14-183 chr14 98084252 98084408 + 30.5 NA intron (NM_029320, intron 14 of 17) intron (NM_029320, intron 14 of 17) -97494 NM_009769 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF Kruppel-like factor 5 0.019231 0.464968 4.569630 chr11-511 chr11 53950320 53950476 + 30.5 NA intron (NM_011031, intron 2 of 15) intron (NM_011031, intron 2 of 15) 6052 NM_001136076 18452 Mm.3705 NM_001136076 ENSMUSG00000018906 P4ha2 AA407196|C76437|P4hl procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide 0.019231 0.566879 1.790254 chr10-396 chr10 90611312 90611439 + 30.5 NA Intergenic CpG -9994 NM_001080130 21917 Mm.439157 NM_001080129 ENSMUSG00000019961 Tmpo 5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP thymopoietin 0.078740 0.609375 -4.699459 chr5-700 chr5 137342949 137343105 + 30.5 NA Intergenic Intergenic -12340 NM_007457 11769 Mm.833 NM_007457 ENSMUSG00000004849 Ap1s1 AP19 adaptor protein complex AP-1, sigma 1 0.006410 0.458599 -0.599239 chr1-771 chr1 179565902 179566058 + 30.5 NA promoter-TSS (NM_027077) promoter-TSS (NM_027077) -508 NM_027077 69428 Mm.84467 NM_027077 ENSMUSG00000015962 1700016C15Rik - RIKEN cDNA 1700016C15 gene 0.012821 0.458599 -2.948005 chr14-185 chr14 98462802 98462958 + 30.5 NA Intergenic Intergenic 281056 NM_009769 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF Kruppel-like factor 5 0.006410 0.471338 -1.494307 chr6-403 chr6 93800771 93800927 + 30.5 NA intron (NM_001029850, intron 2 of 23) intron (NM_001029850, intron 2 of 23) 78168 NM_001083321 14924 Mm.217216 NM_001029850 ENSMUSG00000045095 Magi1 AIP3|BAP1|Baiap1|Gukmi1|KIAA4129|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129 membrane associated guanylate kinase, WW and PDZ domain containing 1 0.006410 0.445860 -3.347148 chr13-316 chr13 63740985 63741141 + 30.5 NA Intergenic Intergenic -83478 NM_001013608 76251 Mm.186610 NM_001013608 ENSMUSG00000021470 0610007P08Rik 1700019D06Rik|9330134C04Rik|MGC100170|Rad26l|Sr278 RIKEN cDNA 0610007P08 gene 0.012821 0.471338 -1.554892 chr16-279 chr16 92355210 92355366 + 30.5 NA promoter-TSS (NM_001081549) promoter-TSS (NM_001081549) -283 NM_001081549 54720 Mm.265744 NM_001081549 ENSMUSG00000022951 Rcan1 2410048A02Rik|AA408855|AI429645|AL024459|AV028423|Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1 regulator of calcineurin 1 0.044872 0.592357 -5.869516 chr1-757 chr1 166849229 166849385 + 30.5 NA Intergenic Intergenic -77122 NM_008510 16963 Mm.190 NM_008510 ENSMUSG00000026573 Xcl1 AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1 chemokine (C motif) ligand 1 0.012821 0.547771 -0.671503 chr3-450 chr3 142277479 142277635 + 30.5 NA intron (NM_001190856, intron 3 of 14) intron (NM_001190856, intron 3 of 14) 51679 NM_022554 56376 Mm.117709 NM_001190852 ENSMUSG00000028273 Pdlim5 1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM PDZ and LIM domain 5 0.006410 0.560510 -6.402682 chr7-377 chr7 129440214 129440370 + 30.5 NA Intergenic Intergenic 57282 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|MGC47139|mKIAA1351 WD repeat domain 11 0.006410 0.509554 4.385474 chr10-430 chr10 126754929 126755085 + 30.5 NA promoter-TSS (NM_008382) promoter-TSS (NM_008382) -286 NM_008382 16326 Mm.3510 NM_008382 ENSMUSG00000047492 Inhbe - inhibin beta E 0.019231 0.560510 -1.659106 chr10-350 chr10 57842221 57842255 + 30.5 NA promoter-TSS (NM_011240) promoter-TSS (NM_011240) 30 NM_011240 19386 Mm.431695 NM_011240 ENSMUSG00000003226 Ranbp2 A430087B05Rik|AI256741|NUP358 RAN binding protein 2 0.176471 0.657143 -16.754995 chr10-420 chr10 109291431 109291587 + 30.5 NA intron (NM_001081035, intron 3 of 38) intron (NM_001081035, intron 3 of 38) 112820 NM_001081035 260315 Mm.461280 NM_001081035 ENSMUSG00000020181 Nav3 4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3 neuron navigator 3 0.006410 0.388535 0.469942 chr4-593 chr4 153141677 153141833 + 30.5 NA intron (NM_001112744, intron 1 of 14) intron (NM_001112744, intron 1 of 14) 1940 NM_001112744 230972 Mm.38481 XM_149562 ENSMUSG00000029032 Arhgef16 - Rho guanine nucleotide exchange factor (GEF) 16 0.012821 0.554140 -2.824434 chr7-322 chr7 49973684 49973840 + 30.5 NA intron (NM_001037906, intron 3 of 19) intron (NM_001037906, intron 3 of 19) 130392 NM_001037906 338352 Mm.383528 NM_001037906 ENSMUSG00000055409 Nell1 B230343H07Rik|l7R6 NEL-like 1 (chicken) 0.032051 0.414013 -4.362134 chr2-520 chr2 56997251 56997407 + 30.5 NA Intergenic Intergenic -55734 NM_001145820 14571 Mm.3711 NM_001145820 ENSMUSG00000026827 Gpd2 AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38 glycerol phosphate dehydrogenase 2, mitochondrial 0.044872 0.522293 -4.771395 chr9-464 chr9 59053919 59054075 + 30.5 NA Intergenic Intergenic -35580 NM_028121 72141 Mm.22456 NM_028121 ENSMUSG00000025236 Adpgk 2610017G09Rik|Adp-gk|C77577 ADP-dependent glucokinase 0.000000 0.535032 -1.700886 chr1-663 chr1 78632820 78632976 + 30.5 NA Intergenic L1_Mus4|LINE|L1 -63074 NM_021342 57814 Mm.24386 NM_021342 ENSMUSG00000047330 Kcne4 AW487937|MiRP3 potassium voltage-gated channel, Isk-related subfamily, gene 4 0.000000 0.350318 -4.263677 chr13-309 chr13 58527534 58527544 + 30.5 NA Intergenic RSINE1|SINE|B4 92961 NM_022317 114304 Mm.18188 NM_022317 ENSMUSG00000021553 Slc28a3 Cnt3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 0.000000 0.454545 -10000000000.000000 chr19-142 chr19 9066385 9066541 + 30.5 NA intron (NM_001039959, intron 1 of 5) intron (NM_001039959, intron 1 of 5) 10135 NM_001039959 66395 Mm.392302 NM_001039959 ENSMUSG00000069833 Ahnak 1110004P15Rik|2310047C17Rik|AA589382|AV091586|DY6 AHNAK nucleoprotein (desmoyokin) 0.012821 0.433121 -3.448588 chr11-592 chr11 102949021 102949177 + 30.5 NA promoter-TSS (NM_027658) promoter-TSS (NM_027658) -329 NM_001130516 71059 Mm.273871 NM_001130515 ENSMUSG00000043372 Hexim2 4933402L21Rik hexamthylene bis-acetamide inducible 2 0.051282 0.515924 -1.867181 chr4-490 chr4 81442071 81442227 + 30.5 NA Intergenic Intergenic -528113 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.006410 0.394904 12.430449 chr1-658 chr1 75262786 75262942 + 30.5 NA intron (NM_007463, intron 1 of 40) intron (NM_007463, intron 1 of 40) -2397 NM_001085371 11790 Mm.275397 NM_001085370 ENSMUSG00000026207 Speg AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297 SPEG complex locus 0.006410 0.471338 -8.236073 chr16-281 chr16 92525548 92525704 + 30.5 NA intron (NM_009821, intron 3 of 4) intron (NM_009821, intron 3 of 4) 60561 NM_009821 12394 Mm.470227 NM_001111021 ENSMUSG00000022952 Runx1 AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b runt related transcription factor 1 0.038462 0.490446 -3.317630 chr4-577 chr4 150183419 150183575 + 30.5 NA intron (NM_001166021, intron 4 of 22) intron (NM_001166021, intron 4 of 22) -281744 NM_009498 22319 Mm.273930 NM_009498 ENSMUSG00000028955 Vamp3 D130027G05Rik|VAMP-3|ceb vesicle-associated membrane protein 3 0.006410 0.503185 -3.695789 chr18-259 chr18 65226963 65227119 + 30.5 NA intron (NM_031881, intron 4 of 29) intron (NM_031881, intron 4 of 29) 78146 NM_031881 83814 Mm.98668 NM_001114386 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b neural precursor cell expressed, developmentally down-regulated gene 4-like 0.038462 0.560510 -4.657206 chr3-387 chr3 69384285 69384441 + 30.5 NA Intergenic Intergenic -20483 NM_178726 242083 Mm.40577 NM_178726 ENSMUSG00000027784 Ppm1l 3222401G13|5930404J21Rik|AI481720|AW045850|KIAA4175|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175 protein phosphatase 1 (formerly 2C)-like 0.032051 0.490446 1.279942 chr5-630 chr5 92947822 92947978 + 30.5 NA Intergenic Intergenic -90181 NR_028429 381650 Mm.392636 XM_975229 ENSMUSG00000060466 Thap6 4930534K21Rik|AI448650 THAP domain containing 6 0.006410 0.401274 1.881493 chr7-329 chr7 65504000 65504156 + 30.5 NA Intergenic L1VL4|LINE|L1 -19769 NM_172310 272396 Mm.35127 NM_172310 ENSMUSG00000030515 Tarsl2 A530046H20Rik|MGC31414 threonyl-tRNA synthetase-like 2 0.000000 0.503185 -4.285807 chr3-398 chr3 95303304 95303460 + 30.5 NA promoter-TSS (NM_029885) promoter-TSS (NM_029885) -36 NM_029885 213054 Mm.224820 NM_029885 ENSMUSG00000038766 Gabpb2 1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1 GA repeat binding protein, beta 2 0.096154 0.585987 -2.468554 chr15-223 chr15 8594470 8594626 + 30.5 NA intron (NM_148938, intron 5 of 9) intron (NM_148938, intron 5 of 9) 63474 NM_148938 20512 Mm.204834 NM_148938 ENSMUSG00000005360 Slc1a3 AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 0.012821 0.490446 -5.008947 chr1-612 chr1 39521760 39521916 + 30.5 NA promoter-TSS (NM_001033135) promoter-TSS (NM_001033135) 55 NM_001033135 67702 Mm.28614 NM_001033135 ENSMUSG00000048234 Rnf149 1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591 ring finger protein 149 0.147436 0.751592 -1.884021 chr13-310 chr13 58976194 58976350 + 30.5 NA intron (NM_001025074, intron 12 of 17) intron (NM_001025074, intron 12 of 17) 158817 NM_001025074 18212 Mm.130054 NM_001025074 ENSMUSG00000055254 Ntrk2 AI848316|C030027L06Rik|Tkrb|trkB neurotrophic tyrosine kinase, receptor, type 2 0.006410 0.490446 -4.004203 chr2-642 chr2 179122321 179122477 + 30.5 NA Intergenic Intergenic -249486 NM_009867 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-cadherin|Rcad cadherin 4 0.006410 0.484076 1.497113 chr17-347 chr17 38036112 38036268 + 30.5 NA Intergenic Intergenic -7952 NM_001177587 100126765 Mm.471586 NM_001177587 Esp36 - exocrine gland-secreting peptide 36 0.000000 0.369427 3.586478 chr1-644 chr1 69285615 69285771 + 30.5 NA Intergenic Intergenic -244426 NM_010154 13869 Mm.442420 XM_001002143 ENSMUSG00000062209 Erbb4 Her4 v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian) 0.000000 0.426752 0.721738 chr8-389 chr8 119408156 119408312 + 30.5 NA Intergenic Intergenic 17243 NM_029297 75465 Mm.23114 NM_029297 ENSMUSG00000034467 Dynlrb2 1700009A04Rik|DNLC2B|Dncl2b dynein light chain roadblock-type 2 0.019231 0.496815 1.033967 chr17-342 chr17 32053696 32053852 + 30.5 NA intron (NM_017476, intron 12 of 13) intron (NM_017476, intron 12 of 13) -1013 NM_019774 56399 Mm.328945 NM_019774 ENSMUSG00000024045 Akap8 1200016A02Rik|AA673585|AKAP95|AU015639 A kinase (PRKA) anchor protein 8 0.012821 0.452229 -2.140670 chr17-312 chr17 17542830 17542986 + 30.5 NA intron (NM_001162909, intron 7 of 8) intron (NM_001162909, intron 7 of 8) 7316 NM_001162909 75202 Mm.227456 NM_001162909 ENSMUSG00000048159 Ncrna00085 4930546H06Rik|9530079D04Rik|B230206P06Rik non-protein coding RNA 85 0.076923 0.636943 3.181372 chr12-411 chr12 33521991 33522147 + 30.5 NA Intergenic Intergenic -17122 NM_013635 19027 Mm.246304 NM_013635 ENSMUSG00000020570 Sypl AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1 synaptophysin-like protein 0.006410 0.445860 -7.390878 chr1-716 chr1 134094450 134094606 + 30.5 NA Intergenic Intergenic -31643 NM_144810 213417 Mm.39723 NM_144810 ENSMUSG00000042115 Klhdc8a A630065K24Rik|MGC19056 kelch domain containing 8A 0.006410 0.522293 0.129173 chr19-134 chr19 3871439 3871595 + 30.5 NA intron (NM_013490, intron 2 of 10) intron (NM_013490, intron 2 of 10) 19745 NM_013490 12660 Mm.225505 NM_001025566 ENSMUSG00000024843 Chka Chetk-alpha|Chk|ChoK|EtnK-alpha choline kinase alpha 0.000000 0.503185 -4.256289 chr3-425 chr3 116991970 116992126 + 30.5 NA Intergenic Intergenic -31092 NM_023245 114301 Mm.253736 NM_023245 ENSMUSG00000033377 Palmd 4631423C22Rik|PALML palmdelphin 0.006410 0.414013 -0.275805 chr5-578 chr5 33562640 33562796 + 30.5 NA Intergenic Intergenic -27623 NM_133903 100689 Mm.34694 NM_133903 ENSMUSG00000037379 Spon2 2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin spondin 2, extracellular matrix protein 0.012821 0.636943 -4.619102 chr17-306 chr17 11146155 11146311 + 30.5 NA intron (NM_016694, intron 3 of 11) intron (NM_016694, intron 3 of 11) 462492 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 MGC130518|PRKN Parkinson disease (autosomal recessive, juvenile) 2, parkin 0.006410 0.343949 -0.294549 chr4-533 chr4 115663898 115664054 + 30.5 NA intron (NM_133681, intron 2 of 7) intron (NM_133681, intron 2 of 7) 1554 NM_133681 66805 Mm.45994 NM_133681 ENSMUSG00000028699 Tspan1 9030418M05Rik tetraspanin 1 0.019231 0.477707 -3.819231 chr17-354 chr17 42809933 42810089 + 30.5 NA Intergenic Intergenic -44105 NM_001081178 224792 Mm.23478 NM_001081178 ENSMUSG00000056492 Gpr116 8430401C09Rik|9330185D23|AI528491|mKIAA0758 G protein-coupled receptor 116 0.006410 0.407643 -1.973318 chr19-156 chr19 27255753 27255909 + 30.5 NA Intergenic Intergenic -28285 NM_013703 22359 Mm.4141 NM_001161420 ENSMUSG00000024924 Vldlr AA408956|AI451093|AW047288 very low density lipoprotein receptor 0.000000 0.356688 -3.834339 chr9-439 chr9 46714133 46714289 + 30.5 NA Intergenic Intergenic 49614 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.000000 0.420382 -1.453710 chr18-255 chr18 62131154 62131310 + 30.5 NA intron (NM_172628, intron 12 of 16) intron (NM_172628, intron 12 of 16) 52789 NM_172628 225608 Mm.262320 NM_172628 ENSMUSG00000045629 Sh3tc2 D430044G18Rik SH3 domain and tetratricopeptide repeats 2 0.000000 0.439490 -7.299798 chr15-250 chr15 41659767 41659923 + 30.5 NA intron (NM_001130163, intron 9 of 13) intron (NM_001130163, intron 9 of 13) -1186 NM_001130164 170719 Mm.254267 NM_001130163 ENSMUSG00000022307 Oxr1 2210416C20Rik|C7|C7B|MGC103081|MGC107466 oxidation resistance 1 0.000000 0.331210 -4.815063 chr7-392 chr7 141559134 141559290 + 30.5 NA intron (NM_023566, intron 31 of 44) intron (NM_023566, intron 31 of 44) 17531 NM_023566 17831 Mm.461296 XM_001001905 ENSMUSG00000025515 Muc2 2010015E03Rik|MCM|wnn mucin 2 0.000000 0.560510 2.485509 chr17-377 chr17 71797174 71797330 + 30.5 NA intron (NM_007439, intron 23 of 28) intron (NM_007439, intron 23 of 28) 110449 NM_030179 78785 Mm.196382 NM_030179 ENSMUSG00000024059 Clip4 1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2 CAP-GLY domain containing linker protein family, member 4 0.019231 0.401274 -3.157276 chr11-600 chr11 108123262 108123418 + 30.5 NA intron (NM_011101, intron 2 of 16) intron (NM_011101, intron 2 of 16) 36638 NM_011101 18750 Mm.222178 NM_011101 ENSMUSG00000050965 Prkca AI875142|Pkca protein kinase C, alpha 0.025641 0.484076 -3.970999 chr3-462 chr3 152147812 152147968 + 30.5 NA promoter-TSS (NM_057172) promoter-TSS (NM_057172) 47 NM_057172 51886 Mm.278922 NM_057172 ENSMUSG00000028034 Fubp1 9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4 far upstream element (FUSE) binding protein 1 0.108974 0.592357 -2.048970 chr5-586 chr5 37080110 37080266 + 30.5 NA Intergenic Intergenic 4815 NM_026242 67568 Mm.477721 NM_026242 ENSMUSG00000055302 Mrfap1 9130413I22Rik|AL022827|Pam14 Morf4 family associated protein 1 0.019231 0.566879 -5.561953 chr2-613 chr2 157600095 157600251 + 30.5 NA Intergenic Intergenic -5920 NM_198627 277432 Mm.441156 NM_198627 ENSMUSG00000037843 Vstm2l Gm691|MGC67359 V-set and transmembrane domain containing 2-like 0.012821 0.522293 -4.606389 chr12-469 chr12 90644558 90644714 + 30.5 NA intron (NM_172544, intron 18 of 19) intron (NM_172544, intron 18 of 19) 499192 NM_010050 13371 Mm.408815 NM_010050 ENSMUSG00000007682 Dio2 5DII|AI324267|DIOII deiodinase, iodothyronine, type II 0.012821 0.426752 -5.851573 chr6-343 chr6 37221384 37221540 + 30.5 NA intron (NM_001081206, intron 1 of 33) intron (NM_001081206, intron 1 of 33) 8120 NM_001081206 320127 Mm.442505 NM_001081206 ENSMUSG00000038665 Dgki C130010K08Rik diacylglycerol kinase, iota 0.000000 0.401274 -0.060565 chr8-413 chr8 127783819 127783975 + 30.5 NA promoter-TSS (NM_198103) promoter-TSS (NM_198103) -78 NM_001111141 244666 Mm.21655 XM_001480333 ENSMUSG00000031986 Gm505 - predicted gene 505 0.153846 0.713376 -10.423416 chr2-477 chr2 27022678 27022834 + 30.5 NA intron (NM_138665, intron 17 of 20) intron (NM_138665, intron 17 of 20) 35241 NM_138942 13166 Mm.167781 NM_138942 ENSMUSG00000000889 Dbh - dopamine beta hydroxylase 0.000000 0.458599 -2.132267 chr17-338 chr17 31051372 31051528 + 30.5 NA intron (NM_153062, intron 8 of 19) intron (NM_153062, intron 8 of 19) 27258 NM_153062 224674 Mm.311395 NM_153062 ENSMUSG00000024036 Slc37a1 G3PP|MGC28167 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 0.012821 0.356688 2.135292 chr7-358 chr7 111320456 111320612 + 30.5 NA intron (NM_173739, intron 6 of 10) intron (NM_173739, intron 6 of 10) 250624 NM_173739 233733 Mm.323322 NM_173739 ENSMUSG00000038296 Galntl4 2900011G21Rik|BC024988|MGC32465 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 0.000000 0.401274 -6.960210 chr17-304 chr17 10914750 10914906 + 30.5 NA intron (NM_016694, intron 2 of 11) intron (NM_016694, intron 2 of 11) 231087 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 MGC130518|PRKN Parkinson disease (autosomal recessive, juvenile) 2, parkin 0.000000 0.420382 0.582942 chr6-328 chr6 3430086 3430242 + 30.5 NA intron (NM_178899, intron 3 of 9) intron (NM_178899, intron 3 of 9) 14334 NM_178899 101202 Mm.206911 NM_178899 ENSMUSG00000044156 Hepacam2 AI987662 HEPACAM family member 2 0.019231 0.464968 -3.616553 chr14-173 chr14 65275315 65275471 + 30.5 NA Intergenic PB1D10|SINE|Alu -23091 NM_019675 56471 Mm.35474 NM_019675 ENSMUSG00000022044 Stmn4 Lagl|R75359|RB3 stathmin-like 4 0.006410 0.464968 -0.336902 chr5-716 chr5 140511266 140511422 + 30.5 NA intron (NM_010752, intron 10 of 17) intron (NM_010752, intron 10 of 17) 62682 NM_010752 17120 Mm.27250 NM_010752 ENSMUSG00000029554 Mad1l1 AI173502|AW550425|Mad1 mitotic arrest deficient 1-like 1 0.006410 0.535032 1.934122 chr13-283 chr13 32487522 32487678 + 30.5 NA Intergenic Intergenic -141591 NM_146041 218138 Mm.247143 NM_146041 ENSMUSG00000038372 Gmds BC031788|C87208|MGC103045|MGC18773 GDP-mannose 4, 6-dehydratase 0.006410 0.445860 5.203840 chr15-266 chr15 68088073 68088229 + 30.5 NA intron (NM_001145888, intron 1 of 15) intron (NM_001145888, intron 1 of 15) 374 NM_001145888 380993 Mm.309526 NM_001145888 ENSMUSG00000022335 Zfat Gm922|MGC56951|Zfat1|Zfp406 zinc finger and AT hook domain containing 0.108974 0.675159 -5.179372 chr3-468 chr3 155897213 155897369 + 30.5 NA Intergenic Intergenic -599795 NM_001039094 320840 Mm.317293 NM_001039094 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra|mKIAA3001 neuronal growth regulator 1 0.000000 0.350318 -3.967930 chr2-618 chr2 164943648 164943804 + 30.5 NA Intergenic Intergenic -17784 NM_174988 104010 Mm.151819 NM_174988 ENSMUSG00000053166 Cdh22 - cadherin 22 0.025641 0.560510 -2.770621 chr5-731 chr5 147779294 147779450 + 30.5 NA intron (NM_028291, intron 4 of 18) intron (NM_028291, intron 4 of 18) 38444 NM_028291 72587 Mm.465343 NM_028291 ENSMUSG00000029647 Pan3 2700050F09Rik|A430027N15Rik|AU014670|MGC102350|MGC99847 PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) 0.000000 0.414013 2.809974 chr2-480 chr2 28200528 28200684 + 30.5 NA Intergenic Intergenic -69343 NM_001005420 241289 Mm.330095 NM_001005420 ENSMUSG00000035829 Gm347 Kiaa0649|MGC99945|mKIAA0649 predicted gene 347 0.019231 0.554140 3.119964 chr1-770 chr1 177076819 177076975 + 30.5 NA intron (NM_011880, intron 3 of 16) intron (NM_011880, intron 3 of 16) 252323 NM_011880 24012 Mm.7956 NM_011880 ENSMUSG00000026527 Rgs7 - regulator of G protein signaling 7 0.012821 0.445860 -2.763849 chr9-530 chr9 118739586 118739742 + 30.5 NA intron (NM_133721, intron 27 of 27) intron (NM_133721, intron 27 of 27) -35569 NM_133710 69274 Mm.439928 NM_133710 ENSMUSG00000047409 Ctdspl 2810418J22Rik|AI426263|HYA22|SCP3 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like 0.000000 0.471338 -6.913710 chr6-396 chr6 90885721 90885877 + 30.5 NA Intergenic Intergenic -110172 NM_001134384 232227 Mm.473438 XM_001479632 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 IQ motif and Sec7 domain 1 0.006410 0.503185 -3.113164 chr15-300 chr15 97240500 97240656 + 30.5 NA Intergenic Intergenic -165257 NM_001164602 105827 Mm.480681 NM_001164563 ENSMUSG00000048218 Amigo2 AI415330|AW208913|Ali1 adhesion molecule with Ig like domain 2 0.025641 0.439490 -2.735080 chr14-143 chr14 7986267 7986423 + 30.5 NA Intergenic Intergenic -526269 NM_028934 74430 Mm.271901 NM_028934 ENSMUSG00000021747 4930452B06Rik 4933406L09Rik|AI854000 RIKEN cDNA 4930452B06 gene 0.006410 0.439490 -3.540226 chr5-581 chr5 34969400 34969556 + 30.5 NA intron (NM_029278, intron 5 of 17) intron (NM_029278, intron 5 of 17) 7527 NM_029278 75416 Mm.40292 NM_029278 ENSMUSG00000036693 Nop14 2610033H07Rik|Nol14 NOP14 nucleolar protein homolog (yeast) 0.006410 0.515924 -4.496294 chr1-601 chr1 34324826 34324982 + 30.5 NA Intergenic Intergenic 59314 NM_027159 69668 Mm.379170 NM_027159 ENSMUSG00000042111 Ccdc115 2310061I09Rik|Ccp1 coiled-coil domain containing 115 0.006410 0.490446 -4.547506 chr18-238 chr18 38408384 38408540 + 30.5 NA exon (NM_017378, exon 1 of 4) exon (NM_017378, exon 1 of 4) 1913 NM_017378 53601 Mm.12862 NM_017378 ENSMUSG00000024440 Pcdh12 Pcdh14|VE-cad-2 protocadherin 12 0.019231 0.515924 -4.815064 chr1-647 chr1 72242873 72243029 + 30.5 NA intron (NM_009533, intron 1 of 20) intron (NM_009533, intron 1 of 20) 2323 NM_009533 22596 Mm.246952 NM_009533 ENSMUSG00000026187 Xrcc5 AI314015|Ku80|Ku86 X-ray repair complementing defective repair in Chinese hamster cells 5 0.012821 0.490446 -5.612881 chr1-735 chr1 158552369 158552525 + 30.5 NA intron (NM_145413, intron 1 of 7) intron (NM_145413, intron 1 of 7) 3140 NM_145413 215015 Mm.229107 NM_145413 ENSMUSG00000033557 Fam20b C530043G21Rik|mKIAA0475 family with sequence similarity 20, member B 0.012821 0.439490 -0.370920 chr3-459 chr3 148366492 148366648 + 30.5 NA Intergenic Intergenic 525451 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.019231 0.439490 -1.115061 chr3-461 chr3 152057462 152057618 + 30.5 NA intron (NM_016867, intron 3 of 5) intron (NM_016867, intron 3 of 5) 45746 NM_016867 54120 Mm.97 NM_016867 ENSMUSG00000039131 Gipc2 2200002N01Rik|AU021850|Semcap2 GIPC PDZ domain containing family, member 2 0.019231 0.471338 0.834185 chr15-235 chr15 31237327 31237483 + 30.5 NA 3' UTR (NM_027496, exon 4 of 4) 3' UTR (NM_027496, exon 4 of 4) 68432 NM_146057 223453 Mm.222867 NM_146057 ENSMUSG00000039168 Dap 4921531N22Rik|AI789753|AU040360|MGC19154|MGC6998 death-associated protein 0.012821 0.522293 3.297479 chr12-422 chr12 41365197 41365353 + 30.5 NA Intergenic Intergenic -169237 NM_053122 93757 Mm.363813 NM_053122 ENSMUSG00000056899 Immp2l AI853880|IMP2 IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) 0.012821 0.471338 -2.629235 chr2-607 chr2 152507998 152508154 + 30.5 NA intron (NM_009743, intron 2 of 2) intron (NM_009743, intron 2 of 2) 15047 NM_009743 12048 Mm.238213 NM_009743 ENSMUSG00000007659 Bcl2l1 Bcl(X)L|Bcl-XL|Bcl-Xs|Bcl2l|BclX|MGC113803|MGC99998|bcl-x BCL2-like 1 0.012821 0.541401 -4.445227 chr2-545 chr2 75760104 75760260 + 30.5 NA Intergenic Intergenic 18836 NM_001081228 620631 Mm.389286 NM_001081228 ENSMUSG00000075272 Ttc30a2 OTTMUSG00000015167 tetratricopeptide repeat domain 30A2 0.019231 0.439490 -3.528730 chr1-590 chr1 15601399 15601555 + 30.5 NA intron (NM_001098528, intron 1 of 1) intron (NM_001098528, intron 1 of 1) -189394 NM_009352 21749 Mm.4306 NM_009352 ENSMUSG00000025925 Terf1 Pin2|Trbf1|Trf1 telomeric repeat binding factor 1 0.000000 0.356688 -8.152013 chr11-533 chr11 69488385 69488541 + 30.5 NA TTS (NM_030702) TTS (NM_030702) 155 NM_144958 13681 Mm.371557 NM_001159375 ENSMUSG00000059796 Eif4a1 BM-010|Ddx2a|Eif4 eukaryotic translation initiation factor 4A1 0.057692 0.535032 -4.971229 chr13-342 chr13 110561816 110561972 + 30.5 NA intron (NM_011056, intron 3 of 16) intron (NM_011056, intron 3 of 16) 116287 NR_030644 100124489 NR_030644 Mir582 Mirn582|mmu-mir-582 microRNA 582 0.038462 0.611465 -7.542130 chr8-405 chr8 126227556 126227712 + 30.5 NA intron (NM_172287, intron 1 of 14) intron (NM_172287, intron 1 of 14) 8832 NM_172287 234857 Mm.150200 NM_172287 ENSMUSG00000010154 Spire2 BC026502|KIAA1832|MGC31610|Spir-2|Spir2 spire homolog 2 (Drosophila) 0.044872 0.585987 -2.774579 chr14-190 chr14 120188165 120188321 + 30.5 NA intron (NM_134082, intron 1 of 26) intron (NM_134082, intron 1 of 26) 17490 NM_134082 223254 Mm.223980 NM_134082 ENSMUSG00000025555 Farp1 AW228844|BC030329|Cdep FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) 0.012821 0.388535 -7.319271 chr11-612 chr11 114683218 114683374 + 30.5 NA intron (NM_001110338, intron 3 of 3) intron (NM_001110338, intron 3 of 3) 15177 NM_147217 70355 Mm.242413 NM_001110337 ENSMUSG00000051043 Gprc5c 1110028I06Rik|3200002M13Rik|MGC11976|MGC6786|Raig3 G protein-coupled receptor, family C, group 5, member C 0.019231 0.611465 -5.275473 chr2-498 chr2 35089960 35090116 + 30.5 NA Intergenic Intergenic -14410 NM_146120 227753 Mm.21109 NM_146120 ENSMUSG00000026879 Gsn MGC28083 gelsolin 0.012821 0.503185 2.587432 chr4-452 chr4 8652767 8652923 + 30.5 NA intron (NM_001081417, intron 1 of 37) intron (NM_001081417, intron 1 of 37) 34778 NM_001081417 320790 Mm.138792 NM_001081417 ENSMUSG00000041235 Chd7 A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|Lda|Mt|Obt|Todo|WBE1|Whi chromodomain helicase DNA binding protein 7 0.006410 0.592357 -1.853157 chr8-325 chr8 7092924 7093080 + 30.5 NA Intergenic Intergenic 1567743 NM_010111 13642 Mm.209813 NM_010111 ENSMUSG00000001300 Efnb2 ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 ephrin B2 0.006410 0.420382 -8.166651 chr5-692 chr5 134708557 134708713 + 30.5 NA intron (NM_001081464, intron 1 of 29) intron (NM_001081464, intron 1 of 29) 32254 NM_001081465 57080 Mm.332735 NM_001081462 ENSMUSG00000023079 Gtf2ird1 1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MGC102438|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320 general transcription factor II I repeat domain-containing 1 0.012821 0.452229 -2.294811 chr17-369 chr17 56670172 56670328 + 30.5 NA Intergenic Intergenic -3000 NM_175731 171168 Mm.218784 NM_175731 ENSMUSG00000045019 Acer1 2310024P18Rik|AI662009|Alkcdase1|Asah3|Cer1 alkaline ceramidase 1 0.019231 0.541401 -1.620129 chr6-385 chr6 85219920 85220076 + 30.5 NA intron (NM_178639, intron 10 of 13) intron (NM_178639, intron 10 of 13) 66410 NM_010131 13796 Mm.391473 NM_010131 ENSMUSG00000033726 Emx1 MGC129284|MGC129285 empty spiracles homolog 1 (Drosophila) 0.012821 0.541401 -4.952633 chr9-496 chr9 85197716 85197872 + 30.5 NA Intergenic Intergenic -73926 NM_001160379 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.025641 0.439490 -5.681175 chr16-272 chr16 81149419 81149575 + 30.5 NA intron (NM_010954, intron 1 of 15) intron (NM_010954, intron 1 of 15) 66209 NM_010954 17968 Mm.433941 NM_001113208 ENSMUSG00000022762 Ncam2 Ncam-2|Ocam|RNCAM neural cell adhesion molecule 2 0.019231 0.433121 1.252561 chr18-229 chr18 24317293 24317449 + 30.5 NA Intergenic L1ME3A|LINE|L1 -30982 NM_013814 14423 Mm.30249 NM_001160404 ENSMUSG00000000420 Galnt1 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 0.006410 0.407643 -8.141238 chr11-610 chr11 114611310 114611466 + 30.5 NA intron (NM_028055, intron 1 of 2) intron (NM_028055, intron 1 of 2) 594 NM_028055 72014 Mm.38347 NM_028055 ENSMUSG00000000202 Btbd17 1500005I02Rik BTB (POZ) domain containing 17 0.012821 0.535032 -5.506392 chr12-438 chr12 72623440 72623596 + 30.5 NA Intergenic Intergenic -126136 NM_026102 208846 Mm.474935 NM_026102 ENSMUSG00000034574 Daam1 1700066F09Rik|2310028E21Rik|AI503486|E130308H01|mKIAA0666 dishevelled associated activator of morphogenesis 1 0.012821 0.471338 -8.259327 chr5-616 chr5 75375180 75375336 + 30.5 NA Intergenic Intergenic 17961 NM_133256 14843 Mm.218752 NM_133256 ENSMUSG00000035946 Gsx2 Gsh-2|Gsh2 GS homeobox 2 0.000000 0.471338 1.147896 chr15-290 chr15 88916797 88916953 + 30.5 NA promoter-TSS (NM_027905) promoter-TSS (NM_027905) 3 NM_027905 223776 Mm.380934 NM_027905 ENSMUSG00000035757 1300018J18Rik Selo RIKEN cDNA 1300018J18 gene 0.134615 0.732484 -9.443915 chr1-597 chr1 32210789 32210945 + 30.5 NA intron (NM_133235, intron 2 of 8) intron (NM_133235, intron 2 of 8) 93516 NM_133235 170771 Mm.336594 NM_133235 ENSMUSG00000026058 Khdrbs2 6330586C16Rik|Slim1|Slm1 KH domain containing, RNA binding, signal transduction associated 2 0.000000 0.337580 -4.367417 chr11-549 chr11 81631177 81631333 + 30.5 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) 153336 NM_001034013 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.000000 0.426752 -5.314966 chr4-569 chr4 141435988 141436144 + 30.5 NA intron (NM_001109685, intron 2 of 7) intron (NM_001109685, intron 2 of 7) 46218 NM_144531 71529 Mm.477412 NM_001109684 ENSMUSG00000040606 9030409G11Rik 2310007B04Rik|AI256607|AI666764|AW061099|Kaz|Kazrin RIKEN cDNA 9030409G11 gene 0.019231 0.566879 1.442035 chr4-521 chr4 106073136 106073292 + 30.5 NA intron (NM_053272, intron 5 of 8) intron (NM_053272, intron 5 of 8) 14245 NM_053272 74754 Mm.133370 NM_053272 ENSMUSG00000034926 Dhcr24 2310076D10Rik|5830417J06Rik|mKIAA0018 24-dehydrocholesterol reductase 0.019231 0.464968 -4.781892 chr7-337 chr7 78792377 78792533 + 30.5 NA intron (NM_020583, intron 3 of 3) intron (NM_020583, intron 3 of 3) 4708 NM_001113527 57444 Mm.322843 NM_001113527 ENSMUSG00000039236 Isg20 1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45 interferon-stimulated protein 0.012821 0.535032 6.634307 chr1-711 chr1 130226523 130226679 + 30.5 NA intron (NM_177445, intron 4 of 15) intron (NM_177445, intron 4 of 15) 18361 NM_177445 226414 Mm.431446 NM_145507 ENSMUSG00000026356 Dars 5730439G15Rik aspartyl-tRNA synthetase 0.006410 0.363057 -6.269221 chr17-297 chr17 9017892 9018048 + 30.5 NA Intergenic Intergenic -11774 NR_027881 67791 Mm.158175 NR_027881 6530411M01Rik - RIKEN cDNA 6530411M01 gene 0.006410 0.509554 -3.838745 chr10-407 chr10 94035032 94035188 + 30.5 NA Intergenic Intergenic 29049 NM_177026 319880 Mm.23047 NM_001168684 ENSMUSG00000020023 Tmcc3 AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 transmembrane and coiled coil domains 3 0.019231 0.528662 -2.256701 chr4-528 chr4 109366056 109366212 + 30.5 NA intron (NM_007983, intron 13 of 18) intron (NM_007983, intron 13 of 18) -109822 NM_172296 242620 Mm.32825 NM_172296 ENSMUSG00000047143 Dmrta2 Dmrt5 doublesex and mab-3 related transcription factor like family A2 0.000000 0.350318 0.167196 chr6-370 chr6 71041458 71041614 + 30.5 NA Intergenic Intergenic 32419 NM_001033929 232078 Mm.37547 NM_001033929 ENSMUSG00000054474 Thnsl2 BC051244|MGC59076|TSH2 threonine synthase-like 2 (bacterial) 0.019231 0.490446 2.368940 chr16-251 chr16 31852496 31852652 + 30.5 NA Intergenic Intergenic -1023 NM_172822 239827 Mm.440388 NM_172822 ENSMUSG00000045625 Pigz F630022B06Rik phosphatidylinositol glycan anchor biosynthesis, class Z 0.044872 0.509554 3.092376 chr4-541 chr4 120014137 120014293 + 30.5 NA intron (NM_013883, intron 12 of 16) intron (NM_013883, intron 12 of 16) -15650 NM_177570 194219 Mm.29788 NM_177570 ENSMUSG00000047518 Slfnl1 4933406A14Rik schlafen like 1 0.012821 0.515924 -0.400395 chr11-583 chr11 100136569 100136725 + 30.5 NA intron (NM_011508, intron 1 of 3) intron (NM_011508, intron 1 of 3) 562 NM_011508 20918 Mm.13886 NM_011508 ENSMUSG00000035530 Eif1 MGC101938|MGC6503|Sui1-rs1 eukaryotic translation initiation factor 1 0.051282 0.662420 -4.296547 chr19-159 chr19 28294433 28294589 + 30.5 NA Intergenic Intergenic -217348 NM_011265 19726 Mm.313321 NM_001166414 ENSMUSG00000040929 Rfx3 C230093O12Rik|MRFX3 regulatory factor X, 3 (influences HLA class II expression) 0.006410 0.439490 -5.202534 chr11-572 chr11 97004392 97004548 + 30.5 NA promoter-TSS (NM_008379) promoter-TSS (NM_008379) -488 NM_008379 16211 Mm.251013 NM_008379 ENSMUSG00000001440 Kpnb1 AA409963|IPOB|Impnb|MGC8315 karyopherin (importin) beta 1 0.147436 0.732484 -8.077328 chr9-470 chr9 61604044 61604200 + 30.5 NA Intergenic Intergenic 108394 NM_018853 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik|MGC103133 ribosomal protein, large, P1 0.000000 0.547771 4.931434 chr11-551 chr11 82512188 82512344 + 30.5 NA Intergenic Intergenic 62719 NR_033582 791422 Mm.341562 NR_033582 Gm11426 OTTMUSG00000000913 predicted gene 11426 0.012821 0.490446 -2.024106 chr4-562 chr4 136288131 136288287 + 30.5 NA intron (NM_198248, intron 3 of 18) intron (NM_198248, intron 3 of 18) 32562 NM_198248 230848 Mm.31068 NM_198248 ENSMUSG00000060862 Zbtb40 BC059177|C230087D24|Gm571|MGC62412|mKIAA0478 zinc finger and BTB domain containing 40 0.019231 0.598726 -7.472733 chr4-556 chr4 133668139 133668295 + 30.5 NA promoter-TSS (NM_133880) promoter-TSS (NM_133880) -218 NM_133880 100163 Mm.22116 NM_133880 ENSMUSG00000037366 Pafah2 2310074E22Rik|AI507170 platelet-activating factor acetylhydrolase 2 0.070513 0.585987 -8.934483 chr3-363 chr3 24516166 24516322 + 30.5 NA Intergenic Intergenic 1828136 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.019231 0.458599 -1.933603 chr5-724 chr5 142809957 142810113 + 30.5 NA Intergenic Intergenic -6484 NM_178702 231858 Mm.33766 NM_178702 ENSMUSG00000029576 Radil AI536456|D930005D10Rik Ras association and DIL domains 0.089744 0.656051 -9.027455 chr9-437 chr9 46065854 46066010 + 30.5 NA intron (NM_183104, intron 3 of 12) intron (NM_183104, intron 3 of 12) 5049 NM_183104 74361 Mm.480176 XM_001479570 ENSMUSG00000056617 4931429L15Rik - RIKEN cDNA 4931429L15 gene 0.019231 0.490446 -5.467752 chr12-462 chr12 87405554 87405710 + 30.5 NA intron (NM_011934, intron 6 of 6) intron (NM_011934, intron 6 of 6) 94886 NM_011934 26380 Mm.235550 NM_001159500 ENSMUSG00000021255 Esrrb Err2|Errb|Estrrb|Nr3b2 estrogen related receptor, beta 0.012821 0.452229 1.762666 chr11-578 chr11 97721028 97721184 + 30.5 NA Intergenic L2|LINE|L2 -20862 NM_001081435 72973 Mm.245939 NM_001081435 ENSMUSG00000070336 Fbxo47 2900052P03Rik|Gm1562|MGC118329 F-box protein 47 0.044872 0.528662 -5.745105 chr12-480 chr12 102425279 102425435 + 30.5 NA Intergenic RMER19B|LTR|ERVK 48334 NM_016856 51786 Mm.716 NM_016856 ENSMUSG00000041781 Cpsf2 100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367 cleavage and polyadenylation specific factor 2 0.000000 0.414013 1.790254 chr3-392 chr3 81223995 81224151 + 30.5 NA intron (NM_019971, intron 1 of 5) intron (NM_019971, intron 1 of 5) 101731 NM_019971 54635 Mm.331089 NM_019971 ENSMUSG00000028019 Pdgfc 1110064L01Rik|AI647969|PDGF-C platelet-derived growth factor, C polypeptide 0.000000 0.350318 2.675469 chr16-238 chr16 21795242 21795398 + 30.5 NA Intergenic Intergenic -10631 NM_172821 71751 Mm.438136 NM_172821 ENSMUSG00000033618 Map3k13 C130026N12Rik|LZK mitogen-activated protein kinase kinase kinase 13 0.006410 0.464968 1.979728 chr1-632 chr1 62911191 62911347 + 30.5 NA Intergenic Intergenic 137274 NM_001081436 227195 Mm.74718 NM_001081436 ENSMUSG00000040865 Ino80d 7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594 INO80 complex subunit D 0.006410 0.509554 -3.565742 chr7-364 chr7 118324179 118324335 + 30.5 NA intron (NM_009940, intron 1 of 5) intron (NM_009940, intron 1 of 5) 205 NM_009940 12850 Mm.20634 NM_009940 ENSMUSG00000030652 Coq7 clk-1 demethyl-Q 7 0.108974 0.592357 -0.585751 chr6-414 chr6 99458530 99458686 + 30.5 NA Intergenic MIR|SINE|MIR 173626 NM_025829 66892 Mm.32889 NM_025829 ENSMUSG00000030068 Eif4e3 1300018P11Rik|AI451927|eIF4E-3 eukaryotic translation initiation factor 4E member 3 0.006410 0.439490 -5.136924 chr11-577 chr11 97629897 97630053 + 30.5 NA intron (NM_010688, intron 2 of 6) intron (NM_010688, intron 2 of 6) 14214 NM_010688 16796 Mm.271967 NM_010688 ENSMUSG00000038366 Lasp1 AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma LIM and SH3 protein 1 0.032051 0.611465 -6.737555 chr11-498 chr11 31636653 31636809 + 30.5 NA Intergenic Intergenic -64869 NM_001024919 69556 Mm.34183 NM_001024919 ENSMUSG00000044502 Bod1 2310022M17Rik|BOD2.1|Fam44b|MGC144642 biorientation of chromosomes in cell division 1 0.012821 0.420382 -2.721722 chr13-278 chr13 28967177 28967333 + 30.5 NA Intergenic CpG -6108 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.051282 0.668790 -3.812366 chr10-384 chr10 82499693 82499849 + 30.5 NA intron (NM_021439, intron 1 of 2) intron (NM_021439, intron 1 of 2) 84476 NM_021439 58250 Mm.360747 NM_021439 ENSMUSG00000034612 Chst11 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s carbohydrate sulfotransferase 11 0.019231 0.579618 -4.811411 chr5-649 chr5 105801285 105801441 + 30.5 NA intron (NM_133897, intron 2 of 3) intron (NM_133897, intron 2 of 3) 41591 NM_133897 100604 Mm.392291 NM_133897 ENSMUSG00000054720 Lrrc8c AD158|AI326115|E430036I04Rik|fad158 leucine rich repeat containing 8 family, member C 0.012821 0.394904 -6.248614 chr16-252 chr16 32662483 32662639 + 30.5 NA intron (NM_080457, intron 1 of 24) intron (NM_080457, intron 1 of 24) 6929 NM_080457 140474 Mm.214599 NM_080457 ENSMUSG00000079620 Muc4 4933405I11Rik mucin 4 0.006410 0.484076 -5.737350 chr17-358 chr17 45460570 45460726 + 30.5 NA Intergenic Intergenic 28096 NM_001110267 22339 Mm.477156 NM_001025250 ENSMUSG00000023951 Vegfa Vegf|Vegf120|Vegf164|Vegf188|Vpf vascular endothelial growth factor A 0.019231 0.522293 -4.313395 chr7-310 chr7 30031927 30032083 + 30.5 NA promoter-TSS (NM_001033140) promoter-TSS (NM_001033140) -870 NM_001033140 68332 Mm.6844 NM_001033140 ENSMUSG00000074210 Sdhaf1 0610010E21Rik|AI430885|AW490662 succinate dehydrogenase complex assembly factor 1 0.012821 0.401274 -1.353783 chr4-493 chr4 83316824 83316980 + 30.5 NA intron (NM_001081012, intron 25 of 25) intron (NM_001081012, intron 25 of 25) 320127 NM_001081012 320226 Mm.180032 NM_001081012 ENSMUSG00000052407 4930473A06Rik 4930418J05Rik|A330015D16Rik RIKEN cDNA 4930473A06 gene 0.006410 0.484076 0.140065 chr6-424 chr6 116616100 116616256 + 30.5 NA promoter-TSS (NM_145980) promoter-TSS (NM_145980) -124 NM_145980 213393 Mm.38231 NM_001166580 ENSMUSG00000048489 8430408G22Rik Depp|Fseg|MGC6835 RIKEN cDNA 8430408G22 gene 0.000000 0.509554 -8.329021 chr17-373 chr17 64573479 64573635 + 30.5 NA intron (NM_008549, intron 10 of 21) intron (NM_008549, intron 10 of 21) 75618 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.012821 0.471338 -4.776264 chr3-417 chr3 108241496 108241652 + 30.5 NA intron (NM_010306, intron 5 of 8) intron (NM_010306, intron 5 of 8) 20451 NM_008141 14686 Mm.439652 NM_008141 ENSMUSG00000009108 Gnat2 AW490837|Gnat-2|Gt-2|Tcalpha guanine nucleotide binding protein, alpha transducing 2 0.000000 0.394904 -1.466927 chr8-326 chr8 10151902 10152058 + 30.5 NA Intergenic Intergenic -1914 NM_001081397 244281 Mm.422761 NM_001081397 ENSMUSG00000039057 Myo16 C230040D10Rik|Gm1105|KIAA0865|mKIAA0865 myosin XVI 0.006410 0.363057 -7.512722 chr15-284 chr15 83131553 83131709 + 30.5 NA intron (NM_025445, intron 14 of 15) intron (NM_025445, intron 14 of 15) 46382 NM_025445 66251 Mm.258910 NM_025445 ENSMUSG00000054277 Arfgap3 0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1 ADP-ribosylation factor GTPase activating protein 3 0.006410 0.566879 -8.881774 chr8-410 chr8 127380641 127380797 + 30.5 NA Intergenic Intergenic -26137 NM_029746 76332 Mm.240108 NM_029746 ENSMUSG00000031979 Cog2 1190002B08Rik|2700012E02Rik|C86089|Ldlc component of oligomeric golgi complex 2 0.000000 0.535032 -2.575694 chr7-299 chr7 3685972 3686128 + 30.5 NA intron (NR_033568, intron 6 of 8) intron (NR_033568, intron 6 of 8) -19759 NM_001113474 52855 Mm.290880 NM_001113474 ENSMUSG00000055541 Lair1 5133400O11Rik|BB115266|D7Bwg0421e|Lair-1|mLair-1 leukocyte-associated Ig-like receptor 1 0.006410 0.407643 -9.781717 chr3-406 chr3 101206762 101206918 + 30.5 NA intron (NM_011197, intron 2 of 8) intron (NM_011197, intron 2 of 8) 32387 NM_011197 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45 prostaglandin F2 receptor negative regulator 0.012821 0.515924 -2.290903 chr1-768 chr1 172632749 172632905 + 30.5 NA intron (NM_001081304, intron 10 of 15) intron (NM_001081304, intron 10 of 15) 71619 NM_001081304 226641 Mm.377046 NM_001081304 ENSMUSG00000026663 Atf6 9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49 activating transcription factor 6 0.025641 0.452229 -5.919346 chr8-417 chr8 128728455 128728611 + 30.5 NA intron (NM_175561, intron 15 of 33) intron (NM_175561, intron 15 of 33) 55850 NM_175561 270109 Mm.145535 NM_175561 ENSMUSG00000060212 Pcnxl2 A830048P05|AU067631|E330039K12Rik|KIAA0435|mKIAA0435 pecanex-like 2 (Drosophila) 0.006410 0.458599 -4.134491 chr12-416 chr12 37587893 37588049 + 30.5 NA Intergenic Intergenic -30840 NM_008584 17286 Mm.341398 NM_008584 ENSMUSG00000036144 Meox2 AI528662|Gax|Mox-2|Mox2 mesenchyme homeobox 2 0.000000 0.363057 0.934684 chr5-574 chr5 24649493 24649649 + 30.5 NA Intergenic Lx|LINE|L1 38532 NR_027851 67261 Mm.158144 NM_026059 2900005J15Rik - RIKEN cDNA 2900005J15 gene 0.000000 0.394904 -2.697426 chr12-493 chr12 107289731 107289887 + 30.5 NA Intergenic B3A|SINE|B2 -172435 NR_015512 71033 Mm.159404 NR_015512 4933406K04Rik 4930426M03Rik|4930485I22Rik|4933427G14Rik RIKEN cDNA 4933406K04 gene 0.019231 0.496815 -7.193120 chr19-135 chr19 4018678 4018834 + 30.5 NA Intergenic Intergenic -6031 NM_133666 17995 Mm.29842 NM_133666 ENSMUSG00000037916 Ndufv1 - NADH dehydrogenase (ubiquinone) flavoprotein 1 0.019231 0.522293 1.918230 chr13-345 chr13 111001365 111001521 + 30.5 NA intron (NM_011056, intron 7 of 16) intron (NM_011056, intron 7 of 16) -23243 NR_035442 100316683 NR_035442 Mir1904 mmu-mir-1904 microRNA mir-1904 0.025641 0.458599 -2.605107 chr12-481 chr12 102743343 102743499 + 30.5 NA intron (NM_001161365, intron 3 of 9) intron (NM_001161365, intron 3 of 9) 58731 NM_001161365 217835 Mm.24145 NM_001161365 ENSMUSG00000044456 Rin3 6430500K07|C86933 Ras and Rab interactor 3 0.012821 0.458599 -3.718657 chr3-427 chr3 118435859 118436015 + 30.5 NA Intergenic Intergenic 10077 NR_029551 387155 NR_029551 Mir137 Mirn137|mmu-mir-137 microRNA 137 0.006410 0.503185 -5.485895 chr10-395 chr10 89230917 89231073 + 30.5 NA intron (NM_029166, intron 12 of 20) intron (NM_029166, intron 12 of 20) 56206 NM_029166 75089 Mm.446134 NM_029166 ENSMUSG00000019951 Uhrf1bp1l 2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|KIAA0701|mKIAA0701 UHRF1 (ICBP90) binding protein 1-like 0.000000 0.343949 3.723897 chr2-563 chr2 101766575 101766731 + 30.5 NA intron (NM_178886, intron 4 of 5) intron (NM_178886, intron 4 of 5) 79553 NM_029635 76501 Mm.330424 NM_029635 ENSMUSG00000027163 Commd9 1810029F08Rik|AA409293 COMM domain containing 9 0.012821 0.509554 -1.882675 chr14-180 chr14 91349962 91350118 + 30.5 NA Intergenic Intergenic 1421826 NM_001081377 211712 Mm.458162 NM_001081377 ENSMUSG00000055421 Pcdh9 1500001L12Rik|A730003J17Rik|AU021802|C530050I23Rik|C630029H24Rik|Gm1213|Gm297 protocadherin 9 0.000000 0.445860 -3.347024 chr3-374 chr3 51107958 51108114 + 30.5 NA Intergenic HAL1|LINE|L1 -204339 NM_009834 12457 Mm.86541 NM_009834 ENSMUSG00000023087 Ccrn4l AU043840|Ccr4|nocturnin CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.012821 0.343949 -1.742129 chr9-459 chr9 57916996 57917152 + 30.5 NA promoter-TSS (NM_001166282) promoter-TSS (NM_001166282) -114 NM_001166282 382077 Mm.335193 NM_001166282 ENSMUSG00000037716 Ccdc33 4930535E21Rik|Gm1117|Tzip1 coiled-coil domain containing 33 0.000000 0.401274 0.038085 chr11-536 chr11 72659954 72660110 + 30.5 NA intron (NM_001045536, intron 10 of 54) intron (NM_001045536, intron 10 of 54) 47612 NM_001045536 195018 Mm.272030 NM_001045536 ENSMUSG00000055670 Zzef1 8430405D05Rik|BC051585|C130099L13Rik|C85424|MGC107545|mKIAA0399 zinc finger, ZZ-type with EF hand domain 1 0.000000 0.414013 0.131720 chr12-432 chr12 58294684 58294840 + 30.5 NA intron (NM_001164370, intron 8 of 9) intron (NM_001164370, intron 8 of 9) 146326 NM_001164370 73490 Mm.268180 XM_354672 Mipol1 1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e mirror-image polydactyly gene 1 homolog (human) 0.000000 0.388535 3.663657 chr19-172 chr19 40926772 40926928 + 30.5 NA Intergenic CpG -21165 NM_028319 72672 Mm.313523 NM_028319 ENSMUSG00000049164 Zfp518 2810401C22Rik|6330417C12Rik|AI426493|KIAA0335|Znf518|Znf518a|mKIAA0335 zinc finger protein 518 0.089744 0.630573 -5.607877 chr5-701 chr5 137381829 137381985 + 30.5 NA Intergenic Intergenic 18927 NM_201373 384309 Mm.100647 XM_001471909 ENSMUSG00000043279 Trim56 A130009K11Rik|Gm452|MGC37358|RNF109 tripartite motif-containing 56 0.012821 0.503185 -5.470530 chr4-592 chr4 153137989 153138145 + 30.5 NA intron (NM_001112744, intron 1 of 14) intron (NM_001112744, intron 1 of 14) 5628 NM_001112744 230972 Mm.38481 XM_149562 ENSMUSG00000029032 Arhgef16 - Rho guanine nucleotide exchange factor (GEF) 16 0.019231 0.503185 -1.572935 chr6-340 chr6 34754665 34754821 + 30.5 NA intron (NM_178630, intron 12 of 18) intron (NM_178630, intron 12 of 18) -38554 NM_197986 68487 Mm.332986 NM_197986 ENSMUSG00000057137 Tmem140 1110007F12Rik transmembrane protein 140 0.000000 0.401274 -7.736345 chr9-476 chr9 64724583 64724739 + 30.5 NA intron (NM_144813, intron 8 of 9) intron (NM_144813, intron 8 of 9) 24952 NM_144813 214111 Mm.156124 NM_144813 ENSMUSG00000034452 Slc24a1 MGC27617 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 0.006410 0.509554 -3.035441 chr1-620 chr1 52299645 52299801 + 30.5 NA Intergenic Intergenic -121946 NM_001113383 14660 Mm.440465 NM_001081081 ENSMUSG00000026103 Gls 6330442B14|AI314027|B230365M23Rik glutaminase 0.000000 0.350318 -8.603732 chr3-442 chr3 138987619 138987775 + 30.5 NA intron (NM_001040690, intron 2 of 14) intron (NM_001040690, intron 2 of 14) 24889 NM_145544 229877 Mm.28893 NM_001040690 ENSMUSG00000028149 Rap1gds1 BC011279|GDS1|MGC18981 RAP1, GTP-GDP dissociation stimulator 1 0.006410 0.439490 -1.342493 chr2-622 chr2 166050682 166050838 + 30.5 NA Intergenic Intergenic 85648 NR_033467 670775 Mm.384326 XM_001478235 Gm11468 OTTMUSG00000001131 predicted gene 11468 0.012821 0.484076 -0.087141 chr5-563 chr5 20783266 20783422 + 30.5 NA intron (NM_175437, intron 22 of 30) intron (NM_175437, intron 22 of 30) 85254 NM_175437 212167 Mm.121705 NM_175437 ENSMUSG00000039934 Pion A530088I07Rik pigeon homolog (Drosophila) 0.000000 0.496815 -5.577846 chr6-360 chr6 53087537 53087693 + 30.5 NA Intergenic Intergenic -89413 NM_173406 231986 Mm.386865 NM_001168277 ENSMUSG00000063568 Jazf1 AI591476|C820002C15|Jaz1|Tip27 JAZF zinc finger 1 0.006410 0.426752 -3.600078 chr9-443 chr9 49535882 49536038 + 30.5 NA intron (NM_010875, intron 1 of 15) intron (NM_010875, intron 1 of 15) 15339 NM_001081445 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.012821 0.382166 -3.786435 chr15-285 chr15 84126672 84126828 + 30.5 NA intron (NM_133167, intron 8 of 12) intron (NM_133167, intron 8 of 12) -25735 NM_022321 64099 Mm.251356 NM_001162500 ENSMUSG00000022439 Parvg AI413459 parvin, gamma 0.012821 0.605096 2.833650 chr6-353 chr6 50495965 50496121 + 30.5 NA promoter-TSS (NR_015581) promoter-TSS (NR_015581) 17 NM_007808 13063 Mm.35389 NM_007808 ENSMUSG00000063694 Cycs - cytochrome c, somatic 0.147436 0.675159 3.325068 chr11-604 chr11 109450951 109451107 + 30.5 NA Intergenic Intergenic -16009 NM_021880 19084 Mm.30039 NM_021880 ENSMUSG00000020612 Prkar1a 1300018C22Rik|RIalpha|Tse-1|Tse1 protein kinase, cAMP dependent regulatory, type I, alpha 0.019231 0.375796 -5.947983 chr15-218 chr15 3182573 3182729 + 30.5 NA Intergenic Intergenic -38115 NM_001042613 20363 Mm.392203 NM_001042613 ENSMUSG00000064373 Sepp1 AU018766|D15Ucla1|Se-P|selp selenoprotein P, plasma, 1 0.012821 0.535032 -3.819231 chr1-605 chr1 36884108 36884264 + 30.5 NA promoter-TSS (NM_018872) promoter-TSS (NM_018872) -113 NM_018872 56030 Mm.186943 NM_018872 ENSMUSG00000026116 Tmem131 2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257 transmembrane protein 131 0.134615 0.770701 -4.769588 chr6-350 chr6 40194541 40194697 + 30.5 NA Intergenic Intergenic -60465 NM_023538 69923 Mm.32840 NM_023538 ENSMUSG00000029916 Agk 2610037M15Rik|6720408I04Rik|AI465370|Mulk acylglycerol kinase 0.000000 0.420382 -7.817224 chr1-664 chr1 79640724 79640880 + 30.5 NA promoter-TSS (NM_027057) promoter-TSS (NM_027057) -9 NM_027057 69368 Mm.293273 NM_001111279 ENSMUSG00000073643 Wdfy1 1700013B03Rik|1700120F24Rik|FENS-1|Jr1|KIAA1435|WDF1|ZFYVE17|mKIAA1435 WD repeat and FYVE domain containing 1 0.141026 0.713376 -5.544077 chr1-589 chr1 14260429 14260585 + 30.5 NA intron (NM_010164, intron 4 of 17) intron (NM_010164, intron 4 of 17) 34906 NM_010164 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor eyes absent 1 homolog (Drosophila) 0.012821 0.445860 -0.443934 chr7-374 chr7 122401378 122401534 + 30.5 NA intron (NM_008855, intron 16 of 16) intron (NM_008855, intron 16 of 16) -61435 NM_019430 54376 Mm.444212 NM_019430 ENSMUSG00000066189 Cacng3 - calcium channel, voltage-dependent, gamma subunit 3 0.025641 0.477707 -2.013883 chr10-325 chr10 6781102 6781258 + 30.5 NA Intergenic Intergenic 25082 NM_027391 70337 Mm.24153 NM_027391 ENSMUSG00000019762 Iyd 0610009A07Rik|AI265638 iodotyrosine deiodinase 0.019231 0.458599 0.606654 chr17-322 chr17 27487560 27487716 + 30.5 NA intron (NM_001044719, intron 4 of 4) intron (NM_001044719, intron 4 of 4) -31098 NM_013891 30051 Mm.26768 NM_013891 ENSMUSG00000024215 Spdef PDEF|Pse SAM pointed domain containing ets transcription factor 0.000000 0.503185 -3.151979 chr11-595 chr11 104420885 104421041 + 30.5 NA Intergenic Intergenic -3126 NM_016780 16416 Mm.87150 NM_016780 ENSMUSG00000020689 Itgb3 CD61|GP3A|INGRB3|MGC159221|MGC159223 integrin beta 3 0.000000 0.382166 -2.470763 chr4-489 chr4 81038004 81038160 + 30.5 NA Intergenic Intergenic -124046 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.038462 0.426752 -4.486535 chr8-388 chr8 119011002 119011158 + 30.5 NA Intergenic Intergenic -379911 NM_029297 75465 Mm.23114 NM_029297 ENSMUSG00000034467 Dynlrb2 1700009A04Rik|DNLC2B|Dncl2b dynein light chain roadblock-type 2 0.000000 0.464968 1.950971 chr2-508 chr2 49920354 49920510 + 30.5 NA intron (NM_177139, intron 1 of 4) intron (NM_177139, intron 1 of 4) 31962 NM_177139 320343 Mm.130607 NM_177139 ENSMUSG00000050447 Lypd6 E130115E03Rik LY6/PLAUR domain containing 6 0.025641 0.452229 -3.178924 chr10-369 chr10 77525763 77525919 + 30.5 NA Intergenic MMVL30-int|LTR|ERV1 47056 NM_138601 28295 Mm.268691 NM_138601 ENSMUSG00000053329 D10Jhu81e C21orf33|ES1 DNA segment, Chr 10, Johns Hopkins University 81 expressed 0.019231 0.464968 -3.277098 chr1-727 chr1 153892731 153892887 + 30.5 NA Intergenic Intergenic -40271 NM_197990 69399 Mm.278031 NM_197990 ENSMUSG00000032666 1700025G04Rik 2610510E02Rik|2900042O04Rik|AV212693|ENSMUSG00000073540|MGC14005 RIKEN cDNA 1700025G04 gene 0.000000 0.464968 -5.809155 chr12-478 chr12 101304858 101305014 + 30.5 NA intron (NM_175493, intron 1 of 2) intron (NM_175493, intron 1 of 2) 4312 NM_175493 238377 Mm.32160 NM_001177673 ENSMUSG00000047415 Gpr68 BB131428|Ogr1 G protein-coupled receptor 68 0.044872 0.579618 -1.128133 chr1-681 chr1 90116227 90116383 + 30.5 NA Intergenic Intergenic -7555 NM_198652 381280 Mm.384762 XM_001471840 ENSMUSG00000044783 Hjurp C330011F01Rik|Gm975|MGC66590|Mfleg1 Holliday junction recognition protein 0.012821 0.598726 0.945118 chr5-657 chr5 112537100 112537256 + 30.5 NA intron (NM_009419, intron 1 of 6) intron (NM_009419, intron 1 of 6) 20169 NM_009419 22022 Mm.250631 NM_009419 ENSMUSG00000029344 Tpst2 AI448750|D5Ucla3|grm|grt protein-tyrosine sulfotransferase 2 0.000000 0.490446 -3.699957 chr5-682 chr5 127900137 127900293 + 30.5 NA intron (NM_133895, intron 1 of 7) intron (NM_133895, intron 1 of 7) 6380 NM_133895 100561 Mm.28506 NM_133895 ENSMUSG00000029416 Slc15a4 AA987064|AW742963|C130069N12Rik|PHT1|PTR4 solute carrier family 15, member 4 0.006410 0.541401 -3.883123 chr3-449 chr3 142211948 142212104 + 30.5 NA intron (NM_001190856, intron 10 of 14) intron (NM_001190856, intron 10 of 14) 117210 NM_022554 56376 Mm.117709 NM_001190852 ENSMUSG00000028273 Pdlim5 1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM PDZ and LIM domain 5 0.006410 0.496815 -3.695790 chr2-534 chr2 70560421 70560577 + 30.5 NA intron (NM_172664, intron 3 of 19) intron (NM_172664, intron 3 of 19) 65820 NM_172664 228012 Mm.136511 NM_172664 ENSMUSG00000041997 Tlk1 4930545J15Rik tousled-like kinase 1 0.000000 0.420382 0.207766 chr9-526 chr9 117652040 117652196 + 30.5 NA Intergenic Intergenic -173507 NM_001172121 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.038462 0.522293 4.752529 chr6-372 chr6 71432563 71432719 + 30.5 NA intron (NM_009543, intron 2 of 3) intron (NM_009543, intron 2 of 3) 9239 NM_009543 22644 Mm.422969 NM_009543 ENSMUSG00000052656 Rnf103 AW146237|AW212918|Zfp103|kf-1 ring finger protein 103 0.012821 0.433121 -2.584945 chr9-520 chr9 115394006 115394162 + 30.5 NA Intergenic L1ME4a|LINE|L1 -234965 NM_024222 68292 Mm.296158 NM_024222 ENSMUSG00000032437 Stt3b 1300006C19Rik|Simp STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) 0.012821 0.343949 5.566008 chr6-335 chr6 29697906 29698062 + 30.5 NA intron (NM_176996, intron 1 of 11) intron (NM_176996, intron 1 of 11) 12478 NM_176996 319757 Mm.29279 NM_176996 ENSMUSG00000001761 Smo E130215L21Rik|Smoh|bnb|smoothened smoothened homolog (Drosophila) 0.000000 0.573248 0.652260 chr10-389 chr10 84397593 84397749 + 30.5 NA intron (NM_001013441, intron 4 of 8) intron (NM_001013441, intron 4 of 8) 50217 NM_001013441 237422 Mm.18936 NM_001013441 ENSMUSG00000035620 Ric8b BC051080|MGC58970|Ric-8|Ric-8b resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 0.006410 0.490446 -4.849022 chr1-746 chr1 160896841 160896997 + 30.5 NA Intergenic L1M2|LINE|L1 -102804 NM_001085376 23850 Mm.458621 XM_001472777 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe pappalysin 2 0.006410 0.350318 1.923391 chr2-641 chr2 179010039 179010195 + 30.5 NA Intergenic Intergenic -361768 NM_009867 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-cadherin|Rcad cadherin 4 0.025641 0.522293 -4.667894 chr2-556 chr2 90741246 90741402 + 30.5 NA promoter-TSS (NM_017368) promoter-TSS (NM_017368) 28 NM_017368 13046 Mm.393354 NM_017368 ENSMUSG00000005506 Celf1 1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50 CUGBP, Elav-like family member 1 0.147436 0.770701 -2.567052 chr10-409 chr10 94949104 94949260 + 30.5 NA intron (NM_080560, intron 1 of 3) intron (NM_080560, intron 1 of 3) 4333 NM_080560 93765 Mm.371667 NM_080560 ENSMUSG00000074781 Ube2n 1500026J17Rik|AL022654|BB101821|UBC13 ubiquitin-conjugating enzyme E2N 0.006410 0.445860 -3.780568 chr16-233 chr16 14918093 14918249 + 30.5 NA Intergenic L1MC3|LINE|L1 97948 NM_025769 66793 Mm.100270 NM_025769 ENSMUSG00000068617 Efcab1 4930449A16Rik|5430404L10Rik EF hand calcium binding domain 1 0.006410 0.312102 4.571560 chr8-351 chr8 38178735 38178891 + 30.5 NA intron (NM_001194940, intron 4 of 16) intron (NM_001194940, intron 4 of 16) 22758 NM_001194941 50768 Mm.210875 NM_001194940 ENSMUSG00000031523 Dlc1 Arhgap7|HP|STARD12|dlc-1 deleted in liver cancer 1 0.038462 0.445860 1.945818 chr9-452 chr9 55529835 55529991 + 30.5 NA intron (NM_001081341, intron 24 of 32) intron (NM_001081341, intron 24 of 32) 190628 NM_027397 104360 Mm.273996 NM_027397 ENSMUSG00000032318 Isl2 3110001N10Rik|MGC171130 insulin related protein 2 (islet 2) 0.000000 0.350318 2.839492 chr7-303 chr7 23916863 23917019 + 30.5 NA promoter-TSS (NM_019940) promoter-TSS (NM_019940) -32 NM_019940 56707 Mm.451093 NM_019940 ENSMUSG00000062862 Zfp111 - zinc finger protein 111 0.025641 0.496815 2.909232 chr2-518 chr2 56334271 56334427 + 30.5 NA Intergenic Intergenic 596075 NM_013613 18227 Mm.3507 NM_001139509 ENSMUSG00000026826 Nr4a2 HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR nuclear receptor subfamily 4, group A, member 2 0.006410 0.375796 -5.562639 chrX-62 chrX 90371203 90371359 + 30.5 NA intron (NM_001044386, intron 1 of 8) intron (NM_001044386, intron 1 of 8) 4845 NM_011768 22764 Mm.919 NM_001044386 ENSMUSG00000079509 Zfx Zfx5|Zfx5,6|Zfx6 zinc finger protein X-linked 0.000000 0.426752 -0.194632 chr5-660 chr5 114234949 114235105 + 30.5 NA intron (NM_198109, intron 2 of 14) intron (NM_198109, intron 2 of 14) 19729 NM_198109 231637 Mm.389682 NM_198109 ENSMUSG00000042121 Ssh1 AW551225|Gm1394|Gm1395|SSH-1|mSSH-1L slingshot homolog 1 (Drosophila) 0.019231 0.503185 0.006597 chr7-332 chr7 67401443 67401599 + 30.5 NA intron (NR_028144, intron 8 of 8) intron (NR_028144, intron 8 of 8) 117228 NM_175124 67867 Mm.31247 NM_027413 ENSMUSG00000030556 Lrrc28 1300004K21Rik|2210012C09Rik|2310058O11Rik leucine rich repeat containing 28 0.032051 0.420382 -1.067073 chr12-405 chr12 28114221 28114377 + 30.5 NA Intergenic Intergenic -185313 NM_009234 20666 Mm.466344 NM_009234 ENSMUSG00000063632 Sox11 1110038H03Rik|6230403H02Rik|AI836553|end1 SRY-box containing gene 11 0.032051 0.522293 0.078354 chr2-577 chr2 118928912 118929068 + 30.5 NA intron (NM_016907, intron 1 of 10) intron (NM_016907, intron 1 of 10) 190 NM_016907 20732 Mm.104955 NM_016907 ENSMUSG00000027315 Spint1 HAI-1 serine protease inhibitor, Kunitz type 1 0.147436 0.719745 0.300332 chr17-350 chr17 40731153 40731309 + 30.5 NA Intergenic B4|SINE|B4 333063 NM_008650 17850 Mm.259884 NM_008650 ENSMUSG00000023921 Mut D230010K02Rik|Mcm methylmalonyl-Coenzyme A mutase 0.012821 0.401274 -4.620368 chr4-534 chr4 116305370 116305526 + 30.5 NA promoter-TSS (NM_026654) promoter-TSS (NM_026654) 43 NM_026654 68276 Mm.30534 NM_026654 ENSMUSG00000028688 Toe1 4930584N22Rik|4933424D16Rik|AI413517 target of EGR1, member 1 (nuclear) 0.083333 0.624204 -3.241093 chr7-344 chr7 87952429 87952585 + 30.5 NA intron (NM_001081414, intron 9 of 9) intron (NM_001081414, intron 9 of 9) -200777 NM_009982 13032 Mm.322945 NM_009982 ENSMUSG00000030560 Ctsc AI047818|DPP1|DPPI cathepsin C 0.000000 0.401274 -0.618702 chr10-324 chr10 6522310 6522466 + 30.5 NA intron (NM_001159942, intron 2 of 16) intron (NM_001159942, intron 2 of 16) -48514 NM_001033253 213783 Mm.150831 NM_001033253 ENSMUSG00000040624 Plekhg1 D10Ertd733e|Gm521|mKIAA1209 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 0.012821 0.439490 5.553692 chr9-415 chr9 14557550 14557706 + 30.5 NA intron (NM_018736, intron 9 of 19) intron (NM_018736, intron 9 of 19) 22529 NM_018736 17535 Mm.149071 NM_018736 ENSMUSG00000031928 Mre11a Mre11|Mre11b meiotic recombination 11 homolog A (S. cerevisiae) 0.000000 0.452229 -0.664060 chr6-420 chr6 113151231 113151387 + 30.5 NA intron (NM_177763, intron 2 of 3) intron (NM_177763, intron 2 of 3) 9852 NM_177763 269788 Mm.37943 NM_177763 ENSMUSG00000042873 Lhfpl4 1190004M23Rik|AI604880|B230384L07|KIAA4027|MGC65621|mKIAA4027 lipoma HMGIC fusion partner-like protein 4 0.025641 0.484076 -4.665223 chr16-232 chr16 12121759 12121915 + 30.5 NA intron (NM_001174086, intron 2 of 3) intron (NM_001174086, intron 2 of 3) 224147 NM_001174086 72555 Mm.310139 XM_908737 Shisa9 2700045P11Rik|Ckamp44 shisa homolog 9 (Xenopus laevis) 0.006410 0.394904 -3.925577 chr7-306 chr7 26801767 26801923 + 30.5 NA Intergenic Intergenic -26869 NM_007817 13107 Mm.4515 NM_007817 ENSMUSG00000052974 Cyp2f2 Cyp2f cytochrome P450, family 2, subfamily f, polypeptide 2 0.000000 0.535032 -4.386747 chr8-356 chr8 47976593 47976749 + 30.5 NA intron (NM_007981, intron 1 of 20) intron (NM_007981, intron 1 of 20) 6813 NM_007981 14081 Mm.210323 NM_007981 ENSMUSG00000018796 Acsl1 Acas|Acas1|Acs|FACS|Facl2 acyl-CoA synthetase long-chain family member 1 0.012821 0.496815 1.623985 chr12-486 chr12 103144701 103144857 + 30.5 NA promoter-TSS (NM_022323) promoter-TSS (NM_022323) -30 NM_177140 320351 Mm.86546 NM_177140 ENSMUSG00000046675 D230037D09Rik - RIKEN cDNA D230037D09 gene 0.115385 0.687898 -4.901684 chr10-359 chr10 72774450 72774606 + 30.5 NA Intergenic SYNREP_MM|Satellite|Satellite -442638 NM_001142760 11994 Mm.351476 XM_977739 ENSMUSG00000052613 Pcdh15 BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19 protocadherin 15 0.000000 0.375796 -1.081755 chr8-339 chr8 24159723 24159879 + 30.5 NA intron (NM_001159774, intron 3 of 21) intron (NM_001159774, intron 3 of 21) 12327 NM_010546 16150 Mm.277886 NM_001159774 ENSMUSG00000031537 Ikbkb AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta inhibitor of kappaB kinase beta 0.000000 0.433121 -1.534616 chr5-603 chr5 65828911 65829067 + 30.5 NA intron (NM_016786, intron 1 of 6) intron (NM_016786, intron 1 of 6) 12594 NM_016786 53323 Mm.441014 NM_016786 ENSMUSG00000029203 Ube2k AW492011|D5Ertd601e|E2-25k|Hip2|Hypg|Lig ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast) 0.000000 0.445860 0.546414 chr14-176 chr14 72365838 72365994 + 30.5 NA Intergenic Intergenic 78976 NM_011506 20916 Mm.38951 NM_011506 ENSMUSG00000022110 Sucla2 4930547K18Rik succinate-Coenzyme A ligase, ADP-forming, beta subunit 0.000000 0.490446 1.535135 chr2-570 chr2 113344052 113344208 + 30.5 NA intron (NM_001043322, intron 7 of 18) intron (NM_001043322, intron 7 of 18) 215357 NM_011824 23892 Mm.474483 NM_011824 ENSMUSG00000074934 Grem1 Cktsf1b1|Drm|ld gremlin 1 0.006410 0.477707 1.909994 chr12-397 chr12 25499182 25499338 + 30.5 NA intron (NM_001083341, intron 3 of 11) intron (NM_001083341, intron 3 of 11) -64750 NM_001081378 77480 Mm.475357 NM_001081378 ENSMUSG00000036333 Kidins220 3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250 kinase D-interacting substrate 220 0.032051 0.496815 -0.729641 chr11-573 chr11 97340423 97340579 + 30.5 NA intron (NM_018873, intron 16 of 19) intron (NM_018873, intron 16 of 19) 50715 NM_018873 56013 Mm.342665 NM_018873 ENSMUSG00000038453 Srcin1 P140|SNIP|mKIAA1684|p140Cap SRC kinase signaling inhibitor 1 0.019231 0.445860 -0.388516 chr5-599 chr5 54361635 54361791 + 30.5 NA intron (NM_001081103, intron 2 of 11) intron (NM_001081103, intron 2 of 11) 74943 NM_001081103 116873 Mm.265985 NM_001081103 ENSMUSG00000039156 Stim2 - stromal interaction molecule 2 0.000000 0.439490 -1.988282 chr11-550 chr11 81689177 81689333 + 30.5 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) 95336 NM_001034013 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.006410 0.458599 0.207767 chr4-565 chr4 137890203 137890359 + 30.5 NA intron (NM_029401, intron 1 of 21) intron (NM_029401, intron 1 of 21) 5787 NM_029401 75718 Mm.251530 XM_144060 ENSMUSG00000028753 Vwa5b1 4931403E03Rik von Willebrand factor A domain containing 5B1 0.025641 0.515924 -3.972179 chr1-701 chr1 121420888 121421044 + 30.5 NA intron (NM_145506, intron 16 of 24) intron (NM_145506, intron 16 of 24) 55580 NM_001113416 226352 Mm.253156 NM_001113416 ENSMUSG00000026383 Epb4.1l5 1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb41l5|Lulu1|NBL5 erythrocyte protein band 4.1-like 5 0.006410 0.356688 -0.081485 chr1-738 chr1 159741893 159742049 + 30.5 NA Intergenic MTD|LTR|MaLR 379125 NM_001159986 89867 Mm.87114 NM_001159986 ENSMUSG00000026589 Sec16b Lztr2|Rgpr|Rgpr-p117 SEC16 homolog B (S. cerevisiae) 0.000000 0.369427 -3.672450 chr19-150 chr19 22994245 22994401 + 30.5 NA TTS (NM_001035244) TTS (NM_001035244) 176622 NR_029591 387200 NR_029591 Mir204 Mirn204|mmu-mir-204 microRNA 204 0.006410 0.528662 0.974360 chr1-690 chr1 94630206 94630362 + 30.5 NA Intergenic Intergenic -31807 NM_016696 14733 Mm.297976 NM_016696 ENSMUSG00000034220 Gpc1 AI462976 glypican 1 0.019231 0.458599 -1.777213 chr3-430 chr3 120584025 120584181 + 30.5 NA Intergenic Intergenic 579615 NM_028456 66568 Mm.263163 NM_025637 ENSMUSG00000028133 Rwdd3 2510027J23Rik|3110037C01Rik|AI035684|AI662458|MGC150017|MGC170967|MGC170969|X2CR1 RWD domain containing 3 0.000000 0.407643 -4.724035 chr4-559 chr4 136015021 136015177 + 30.5 NA intron (NM_010142, intron 3 of 15) intron (NM_010142, intron 3 of 15) 92912 NM_010142 13844 Mm.250981 NM_010142 ENSMUSG00000028664 Ephb2 Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5 Eph receptor B2 0.000000 0.579618 6.304957 chr13-279 chr13 28986066 28986222 + 30.5 NA Intergenic Intergenic -24997 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.012821 0.420382 -2.027799 chr12-436 chr12 70733028 70733184 + 30.5 NA intron (NM_201519, intron 26 of 30) intron (NM_201519, intron 26 of 30) -23794 NM_183294 71091 Mm.132325 NM_183294 ENSMUSG00000020990 Cdkl1 4933411O17Rik|MGC144706|MGC144707 cyclin-dependent kinase-like 1 (CDC2-related kinase) 0.025641 0.535032 -7.879075 chr1-726 chr1 153525622 153525778 + 30.5 NA intron (NM_001039644, intron 2 of 19) intron (NM_001039644, intron 2 of 19) 8109 NM_001039644 66967 Mm.337691 NM_001039644 ENSMUSG00000043019 Edem3 2310050N11Rik ER degradation enhancer, mannosidase alpha-like 3 0.006410 0.375796 -0.009297 chr8-367 chr8 75169089 75169245 + 30.5 NA promoter-TSS (NM_007456) promoter-TSS (NM_007456) 47 NM_007456 11767 Mm.290086 NM_007456 ENSMUSG00000003033 Ap1m1 AA408894|AP47|Adtm1A|Cltnm|[m]1A|mu1A adaptor-related protein complex AP-1, mu subunit 1 0.102564 0.662420 -4.159767 chr5-555 chr5 4403165 4403321 + 30.5 NA Intergenic Intergenic 204871 NM_001042670 208595 Mm.129815 NM_001042670 ENSMUSG00000053178 Gm9897 ENSMUSG00000053178 predicted gene 9897 0.006410 0.464968 -6.597989 chr1-760 chr1 167073589 167073745 + 30.5 NA promoter-TSS (NM_145513) promoter-TSS (NM_145513) -34 NM_145513 226591 Mm.21520 NM_145513 ENSMUSG00000040843 Tiprl 1810011K17Rik TIP41, TOR signalling pathway regulator-like (S. cerevisiae) 0.115385 0.687898 -4.796884 chr1-706 chr1 127636099 127636255 + 30.5 NA intron (NM_027677, intron 1 of 1) intron (NM_027677, intron 1 of 1) 103583 NM_145100 72585 Mm.479965 NM_145100 ENSMUSG00000026344 Lypd1 2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1 Ly6/Plaur domain containing 1 0.006410 0.598726 -1.940692 chr9-444 chr9 50121198 50121354 + 30.5 NA Intergenic Intergenic -125478 NM_029639 76509 Mm.29959 NM_029639 ENSMUSG00000032068 1600029D21Rik 0610037B23Rik|AA407923|AU043048|PLET1 RIKEN cDNA 1600029D21 gene 0.006410 0.388535 -3.310826 chr13-348 chr13 112263829 112263985 + 30.5 NA Intergenic Intergenic -111983 NM_175497 238880 Mm.107293 NM_175497 ENSMUSG00000055194 Actbl2 4732495G21Rik actin, beta-like 2 0.006410 0.363057 -4.615597 chr5-693 chr5 135046129 135046285 + 30.5 NA Intergenic Intergenic -14326 NM_007925 13717 Mm.404771 NM_007925 ENSMUSG00000029675 Eln AI385707|AI480567|E030024M20Rik elastin 0.025641 0.515924 2.393068 chr5-600 chr5 64909733 64909889 + 30.5 NA Intergenic MER45C|DNA|Tip100 -172846 NM_008453 16599 Mm.439720 NM_008453 ENSMUSG00000029178 Klf3 9930027G08Rik|AL024007|Bklf|MGC151315|Tef-2 Kruppel-like factor 3 (basic) 0.000000 0.522293 -2.305603 chr15-230 chr15 28103286 28103442 + 30.5 NA Intergenic Intergenic -44990 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnahc5 AU022615|Dnah5|KIAA1603|Mdnah5|mKIAA1603 dynein, axonemal, heavy chain 5 0.025641 0.458599 -4.726214 chr9-424 chr9 30881149 30881305 + 30.5 NA 5' UTR (NM_011176, exon 1 of 19) 5' UTR (NM_011176, exon 1 of 19) 137 NM_011176 19143 Mm.243926 NM_011176 ENSMUSG00000031995 St14 Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase suppression of tumorigenicity 14 (colon carcinoma) 0.108974 0.707006 -4.007655 chr7-345 chr7 89354219 89354375 + 30.5 NA Intergenic Intergenic 38481 NM_029614 76453 Mm.250438 NM_029614 ENSMUSG00000039405 Prss23 1700019G06Rik|2310046G15Rik|4930479H08Rik|AI790574|Spuve protease, serine, 23 0.000000 0.458599 2.707589 chr3-411 chr3 104599461 104599617 + 30.5 NA intron (NM_001025067, intron 11 of 17) intron (NM_001025067, intron 11 of 17) 41378 NM_001025067 269473 Mm.34855 NM_001025067 ENSMUSG00000032913 Lrig2 4632419I10Rik|BB096938 leucine-rich repeats and immunoglobulin-like domains 2 0.012821 0.337580 -4.629755 chr10-408 chr10 94174513 94174669 + 30.5 NA intron (NM_029852, intron 7 of 15) intron (NM_029852, intron 7 of 15) 56003 NM_029852 77048 Mm.296971 NM_027479 ENSMUSG00000020024 Ccdc41 2600001G24Rik|4921537D05Rik|5730513H21Rik coiled-coil domain containing 41 0.006410 0.350318 -1.483401 chr8-416 chr8 128381421 128381577 + 30.5 NA Intergenic ID_B1|SINE|B4 -2699 NM_001081337 244668 Mm.463243 NM_001081337 ENSMUSG00000001995 Sipa1l2 BC058408|mKIAA1389 signal-induced proliferation-associated 1 like 2 0.019231 0.528662 -1.502491 chr16-267 chr16 52357699 52357855 + 30.5 NA intron (NM_009655, intron 1 of 15) intron (NM_009655, intron 1 of 15) 14568 NM_009655 11658 Mm.288282 NM_009655 ENSMUSG00000022636 Alcam AI853494|BEN|CD166|DM-GRASP|MGC27910|MuSC|SC1 activated leukocyte cell adhesion molecule 0.012821 0.388535 -9.673852 chr8-402 chr8 124772162 124772318 + 30.5 NA intron (NM_011404, intron 6 of 9) intron (NM_011404, intron 6 of 9) 21536 NM_011404 20539 Mm.27943 NM_011404 ENSMUSG00000040010 Slc7a5 4F2LC|D0H16S474E|TA1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 0.006410 0.496815 -1.605880 chr5-622 chr5 80809525 80809681 + 30.5 NA Intergenic Intergenic -1286550 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.012821 0.452229 -1.673297 chr11-626 chr11 119363753 119363909 + 30.5 NA promoter-TSS (NM_008730) promoter-TSS (NM_008730) 79 NM_008730 18164 Mm.5142 NM_008730 ENSMUSG00000025582 Nptx1 D11Bwg1004e|Np1 neuronal pentraxin 1 0.160256 0.757962 -8.413716 chr5-590 chr5 43312711 43312867 + 30.5 NA Intergenic Intergenic -208921 NM_175937 231207 Mm.7233 NM_001177379 ENSMUSG00000039782 Cpeb2 A630055H10Rik cytoplasmic polyadenylation element binding protein 2 0.006410 0.515924 -2.847774 chr6-373 chr6 71652605 71652761 + 30.5 NA intron (NM_178608, intron 1 of 6) intron (NM_178608, intron 1 of 6) 15315 NM_178608 52250 Mm.146332 NM_178608 ENSMUSG00000052852 Reep1 AW558420|C87808|D6Ertd253e receptor accessory protein 1 0.012821 0.541401 -1.865913 chr3-369 chr3 32226225 32226381 + 30.5 NA intron (NM_028231, intron 2 of 5) intron (NM_028231, intron 2 of 5) 132723 NM_028231 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik|MGC57945 potassium large conductance calcium-activated channel, subfamily M, beta member 2 0.000000 0.414013 -2.600780 chr11-491 chr11 22544085 22544241 + 30.5 NA Intergenic Intergenic 131878 NM_153596 103765 Mm.221274 NM_153596 ENSMUSG00000049904 Tmem17 AI503894|AW049890|MGC40971 transmembrane protein 17 0.006410 0.445860 -1.705159 chr11-616 chr11 116122818 116122974 + 30.5 NA promoter-TSS (NM_016857) promoter-TSS (NM_016857) -68 NM_001162872 53413 Mm.22530 NM_001162872 ENSMUSG00000020792 Exoc7 Exo70|sec70 exocyst complex component 7 0.108974 0.700637 -5.944031 chr18-215 chr18 7093765 7093921 + 30.5 NA intron (NM_001081393, intron 20 of 20) intron (NM_001081393, intron 20 of 20) -89066 NM_177595 210719 Mm.257186 NM_177595 ENSMUSG00000061013 Mkx 9430023B20Rik|Irxl1 mohawk homeobox 0.000000 0.407643 -0.777309 chr7-383 chr7 131137836 131137992 + 30.5 NA intron (NM_026655, intron 5 of 5) intron (NM_026655, intron 5 of 5) 12145 NM_183272 68223 Mm.233827 NM_183272 ENSMUSG00000030859 Fam24a 1700063I17Rik family with sequence similarity 24, member A 0.006410 0.356688 1.179224 chr2-544 chr2 75734717 75734873 + 30.5 NA Intergenic Intergenic 4506 NM_028235 72421 Mm.275109 NM_028235 ENSMUSG00000075273 Ttc30b 2510042P03Rik|Tcc30b tetratricopeptide repeat domain 30B 0.006410 0.350318 -3.301542 chr4-574 chr4 149248405 149248561 + 30.5 NA intron (NM_001085492, intron 1 of 22) intron (NM_001085492, intron 1 of 22) 122768 NM_001085492 68703 Mm.291274 XM_204015 ENSMUSG00000039852 Rere 1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|mKIAA0458 arginine glutamic acid dipeptide (RE) repeats 0.019231 0.420382 -2.034606 chr4-540 chr4 118920324 118920480 + 30.5 NA promoter-TSS (NM_026494) promoter-TSS (NM_026494) -50 NM_026494 106564 Mm.27245 NM_026494 ENSMUSG00000028636 Ppcs 6330579B17Rik|AI413471|AI790434 phosphopantothenoylcysteine synthetase 0.089744 0.630573 -4.123435 chr18-265 chr18 81179581 81179737 + 30.5 NA Intergenic Intergenic -31022 NM_178280 20689 Mm.215917 NM_178280 ENSMUSG00000024565 Sall3 B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt sal-like 3 (Drosophila) 0.006410 0.490446 -4.065754 chr5-613 chr5 73193016 73193172 + 30.5 NA promoter-TSS (NM_153567) promoter-TSS (NM_153567) -357 NM_001113423 75991 Mm.478300 NM_001113423 ENSMUSG00000036087 Slain2 5033405K12Rik|8030444K12Rik|AI596370|MGC47019|mKIAA1458 SLAIN motif family, member 2 0.096154 0.656051 -4.829995 chr3-416 chr3 108176531 108176687 + 30.5 NA Intergenic Intergenic -3694 NM_001160411 14865 Mm.31203 NM_001160411 ENSMUSG00000027890 Gstm4 1110004G14Rik|GSTM7-7|Gstb-4|Gstb4|MGC40906 glutathione S-transferase, mu 4 0.012821 0.439490 0.666867 chr17-317 chr17 24911943 24912099 + 30.5 NA promoter-TSS (NM_183150) promoter-TSS (NM_183150) -139 NM_183150 214489 Mm.274433 XM_128528 BC003965 Ccsmst1|MGC7403 cDNA sequence BC003965 0.096154 0.566879 -6.036983 chr10-363 chr10 75316605 75316761 + 30.5 NA Intergenic RLTR12B|LTR|ERVK -12717 NM_010798 17319 Mm.2326 NM_010798 ENSMUSG00000033307 Mif GIF|Glif|MGC107654 macrophage migration inhibitory factor 0.044872 0.496815 -7.086224 chr8-372 chr8 87242274 87242430 + 30.5 NA Intergenic Intergenic -63116 NM_007578 12286 Mm.334658 NM_007578 ENSMUSG00000034656 Cacna1a APCA|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|leaner|nmf352|rkr|rocker|tg|tottering calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 0.000000 0.585987 -1.728499 chr2-463 chr2 7073999 7074155 + 30.5 NA intron (NM_001110231, intron 3 of 15) intron (NM_001110231, intron 3 of 15) -75503 NM_001160292 14007 Mm.411896 NM_001110228 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 0.000000 0.394904 4.082977 chr10-417 chr10 104839230 104839386 + 30.5 NA intron (NM_177368, intron 1 of 11) intron (NM_177368, intron 1 of 11) 139281 NM_177368 278279 Mm.25225 NM_177368 ENSMUSG00000036019 Tmtc2 8430438D04Rik|D330034A10Rik|MGC116613 transmembrane and tetratricopeptide repeat containing 2 0.025641 0.426752 -4.974877 chr15-286 chr15 84349304 84349460 + 30.5 NA Intergenic Intergenic 36207 NM_177630 223732 Mm.6471 NM_177630 ENSMUSG00000046268 Ldoc1l BC058638|MGC73499|Mar6|Mart6 leucine zipper, down-regulated in cancer 1-like 0.000000 0.515924 -5.465322 chr11-562 chr11 88339762 88339918 + 30.5 NA intron (NM_054043, intron 6 of 13) intron (NM_054043, intron 6 of 13) 194479 NM_054043 76626 Mm.474737 XM_001471946 ENSMUSG00000069769 Msi2 1700105C15Rik|AI451722|AI563628|AW489193|MGC118040|MGC130496|Msi2h Musashi homolog 2 (Drosophila) 0.019231 0.585987 2.239527 chr13-333 chr13 100251486 100251642 + 30.5 NA Intergenic Intergenic -33415 NM_001004149 238803 Mm.343207 NM_001004149 ENSMUSG00000050919 Zfp366 DC-SCRIPT|MGC99415|Znf366 zinc finger protein 366 0.012821 0.471338 -2.528917 chr12-425 chr12 48837495 48837651 + 30.5 NA Intergenic L1_Mus1|LINE|L1 -1142841 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.000000 0.394904 0.054965 chr4-460 chr4 15975754 15975910 + 30.5 NA Intergenic Intergenic -34808 NM_145950 209212 Mm.46455 NM_145950 ENSMUSG00000041153 Osgin2 BC010311|C230027H09Rik|MGC11786 oxidative stress induced growth inhibitor family member 2 0.006410 0.382166 -6.246067 chr1-754 chr1 166311600 166311756 + 30.5 NA Intergenic Intergenic -16648 NM_009721 11931 Mm.4550 NM_009721 ENSMUSG00000026576 Atp1b1 Atpb|Atpb-1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.025641 0.464968 3.162755 chr3-460 chr3 148559575 148559731 + 30.5 NA Intergenic B3A|SINE|B2 332368 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.019231 0.522293 -7.372040 chr14-170 chr14 56561663 56561819 + 30.5 NA intron (NM_020506, intron 9 of 22) intron (NM_020506, intron 9 of 22) -36062 NM_026526 68043 Mm.45225 NM_026526 ENSMUSG00000021951 N6amt2 2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96 N-6 adenine-specific DNA methyltransferase 2 (putative) 0.006410 0.496815 -3.003338 chr2-639 chr2 178770400 178770556 + 30.5 NA Intergenic Intergenic 410464 NM_198656 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010|MGC56946 cadherin-like 26 0.000000 0.522293 1.751935 chr2-629 chr2 167462244 167462400 + 30.5 NA Intergenic L2|LINE|L2 79910 NR_015500 329562 Mm.123101 NM_177851 A530013C23Rik - RIKEN cDNA A530013C23 gene 0.000000 0.554140 -0.476197 chr13-331 chr13 98040398 98040554 + 30.5 NA intron (NM_001166065, intron 2 of 2) intron (NM_001166065, intron 2 of 2) 15089 NM_001166065 218476 Mm.297584 XM_975059 Gcnt4 C2gnt3|Gm279|Gm73 glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) 0.019231 0.477707 1.748060 chr2-497 chr2 34749459 34749615 + 30.5 NA Intergenic Intergenic -13552 NM_028716 74016 Mm.65691 NM_028716 ENSMUSG00000026873 Phf19 3110009G19Rik|3321402G02Rik PHD finger protein 19 0.032051 0.573248 -5.508322 chr9-438 chr9 46387319 46387475 + 30.5 NA Intergenic Intergenic -277200 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.012821 0.566879 -7.242731 chr1-769 chr1 173339163 173339319 + 30.5 NA promoter-TSS (NM_019484) promoter-TSS (NM_019484) -911 NM_019484 56009 Mm.389208 NM_019484 ENSMUSG00000060244 Refbp2 C130042O11Rik|MGC117570|REF2 RNA and export factor binding protein 2 0.025641 0.433121 -4.263677 chr1-781 chr1 184666761 184666917 + 30.5 NA intron (NM_144796, intron 1 of 7) intron (NM_144796, intron 1 of 7) 65259 NM_144796 96935 Mm.331052 NM_144796 ENSMUSG00000038576 Susd4 AI848994|E430021N18Rik|MGC30368|N28096 sushi domain containing 4 0.000000 0.515924 4.775868 chr4-451 chr4 8134149 8134305 + 30.5 NA intron (NM_007592, intron 3 of 8) intron (NM_007592, intron 3 of 8) 31961 NM_007592 12319 Mm.119320 NM_007592 ENSMUSG00000041261 Car8 AW546993|Ca8|Cals|Cals1|Carp|wdl carbonic anhydrase 8 0.006410 0.458599 -2.339369 chr9-467 chr9 59825645 59825801 + 30.5 NA intron (NM_172444, intron 2 of 11) intron (NM_172444, intron 2 of 11) 76424 NM_001101600 665389 Mm.335214 NM_001101600 Gm7616 EG665389 predicted gene 7616 0.000000 0.477707 -1.534616 chr2-649 chr2 181528532 181528688 + 30.5 NA promoter-TSS (NM_172676) promoter-TSS (NM_172676) -56 NM_172676 229011 Mm.205422 NM_172676 ENSMUSG00000038605 Samd10 D930033N23Rik|E130318E08 sterile alpha motif domain containing 10 0.134615 0.738854 -3.834951 chr7-356 chr7 109590490 109590646 + 30.5 NA exon (NM_020052, exon 22 of 22) exon (NM_020052, exon 22 of 22) -17846 NM_020610 78593 Mm.275374 NM_020610 ENSMUSG00000034825 Nrip3 A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2 nuclear receptor interacting protein 3 0.006410 0.439490 -4.075206 chr15-269 chr15 72631249 72631405 + 30.5 NA intron (NM_001164641, intron 17 of 17) intron (NM_001164641, intron 17 of 17) 6253 NR_002864 353342 Mm.440245 NR_002864 Peg13 - paternally expressed 13 0.019231 0.528662 -7.492848 chr11-489 chr11 20012962 20013118 + 30.5 NA promoter-TSS (NM_146243) promoter-TSS (NM_146243) -86 NM_146243 66713 Mm.259045 NM_146243 ENSMUSG00000020152 Actr2 4921510D23Rik|AA409782|Arp2|D6Ertd746e|MGC36604 ARP2 actin-related protein 2 homolog (yeast) 0.096154 0.675159 -4.285807 chr6-397 chr6 92282377 92282533 + 30.5 NA Intergenic Intergenic -72303 NM_009426 22044 Mm.1363 NM_009426 ENSMUSG00000005892 Trh AI324969|AL022609 thyrotropin releasing hormone 0.006410 0.407643 -3.034986 chr6-433 chr6 124974463 124974619 + 30.5 NA promoter-TSS (NM_175557) promoter-TSS (NM_175557) -882 NM_175557 269800 Mm.108677 NM_175557 ENSMUSG00000038346 Zfp384 BB163993|C130073D16Rik|Ciz|NP|Nmp4 zinc finger protein 384 0.083333 0.605096 -2.344951 chr5-577 chr5 31974514 31974670 + 30.5 NA promoter-TSS (NM_181282) promoter-TSS (NM_181282) -38 NM_181279 107976 Mm.120763 NM_144541 ENSMUSG00000052139 Bre 6030405P19Rik|AI429776|B830038C02Rik brain and reproductive organ-expressed protein 0.160256 0.713376 -4.559480 chr5-627 chr5 85208507 85208663 + 30.5 NA intron (NM_007937, intron 6 of 15) intron (NM_007937, intron 6 of 15) 283358 NM_007937 13839 Mm.438006 NM_007937 ENSMUSG00000029245 Epha5 AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk Eph receptor A5 0.006410 0.343949 -0.454664 chr1-599 chr1 32390799 32390955 + 30.5 NA intron (NM_133235, intron 4 of 8) intron (NM_133235, intron 4 of 8) 100962 NM_001164286 408191 Mm.479439 XM_887934 ENSMUSG00000067716 Gm5415 EG408191|Senp14 predicted gene 5415 0.000000 0.318471 -5.725527 chr4-582 chr4 151656116 151656272 + 30.5 NA Intergenic MLT1D|LTR|MaLR 114855 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.032051 0.560510 -5.301924 chr3-467 chr3 155858644 155858800 + 30.5 NA Intergenic Intergenic -638364 NM_001039094 320840 Mm.317293 NM_001039094 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra|mKIAA3001 neuronal growth regulator 1 0.000000 0.445860 -4.177370 chr11-581 chr11 99883800 99883956 + 30.5 NA Intergenic Intergenic -17237 NM_010659 16660 Mm.439673 NM_010659 ENSMUSG00000048981 Krt31 Ha1|Kha1|Krt1-1|MKHA-1 keratin 31 0.032051 0.490446 3.597208 chr14-144 chr14 8045495 8045651 + 30.5 NA Intergenic Intergenic -585497 NM_028934 74430 Mm.271901 NM_028934 ENSMUSG00000021747 4930452B06Rik 4933406L09Rik|AI854000 RIKEN cDNA 4930452B06 gene 0.000000 0.464968 -5.074395 chrX-65 chrX 99848164 99848320 + 30.5 NA Intergenic Intergenic 14938 NM_029158 75064 Mm.159414 NM_029158 ENSMUSG00000031330 Zcchc13 4930513O09Rik|Cnbp2 zinc finger, CCHC domain containing 13 0.006410 0.509554 -5.491701 chr18-227 chr18 23788696 23788852 + 30.5 NA intron (NM_207650, intron 16 of 20) intron (NM_207650, intron 16 of 20) -106568 NM_001162942 212307 Mm.132237 NM_001162941 ENSMUSG00000024277 Mapre2 AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 0.006410 0.560510 4.594344 chr9-458 chr9 56573906 56574062 + 30.5 NA Intergenic MIR|SINE|MIR 76116 NM_198673 382075 Mm.335177 NM_198673 ENSMUSG00000045620 Odf3l1 BC049697|Gm1116|MGC58606 outer dense fiber of sperm tails 3-like 1 0.000000 0.496815 -3.646072 chr17-301 chr17 9806612 9806768 + 30.5 NA Intergenic Intergenic -293629 NM_001163836 67543 Mm.26987 NM_001163836 Pabpc6 4932702K14Rik|AI428050|MGC132900|Pabpc3 poly(A) binding protein, cytoplasmic 6 0.012821 0.458599 -2.335121 chr5-596 chr5 53430960 53431116 + 30.5 NA intron (NM_172710, intron 13 of 23) intron (NM_172710, intron 13 of 23) 70662 NM_172710 231238 Mm.235020 NM_172710 ENSMUSG00000029189 Sel1l3 2310045A20Rik|AI429585|mKIAA0746 sel-1 suppressor of lin-12-like 3 (C. elegans) 0.012821 0.528662 -5.636680 chr8-409 chr8 127350825 127350981 + 30.5 NA Intergenic Intergenic -30877 NM_171824 209966 Mm.234233 NM_171824 ENSMUSG00000050751 Pgbd5 2900019M05Rik|AI854313 piggyBac transposable element derived 5 0.006410 0.471338 -1.434065 chr10-422 chr10 118326936 118327092 + 30.5 NA Intergenic MER63|DNA|AcHobo -55118 NM_001014390 69181 Mm.458174 NM_001014390 ENSMUSG00000028630 Dyrk2 1810038L18Rik dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 0.025641 0.496815 -7.348701 chr5-729 chr5 147384303 147384459 + 30.5 NA intron (NM_080795, intron 1 of 9) intron (NM_080795, intron 1 of 9) 2540 NM_080795 140887 Mm.272203 NM_080795 ENSMUSG00000016520 Lnx2 9630046H24|AW209022 ligand of numb-protein X 2 0.012821 0.420382 -1.287415 chr19-153 chr19 25133444 25133600 + 30.5 NA intron (NM_028785, intron 4 of 47) intron (NM_028785, intron 4 of 47) 66897 NM_028785 76088 Mm.102485 NM_028785 ENSMUSG00000052085 Dock8 1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977 dedicator of cytokinesis 8 0.032051 0.496815 -1.354577 chr5-735 chr5 149586856 149587012 + 30.5 NA intron (NM_009663, intron 2 of 4) intron (NM_009663, intron 2 of 4) 11528 NM_009663 11690 Mm.19844 NM_009663 ENSMUSG00000060063 Alox5ap Flap arachidonate 5-lipoxygenase activating protein 0.019231 0.484076 -2.395482 chr10-361 chr10 74421924 74422080 + 30.5 NA intron (NM_010311, intron 1 of 3) intron (NM_010311, intron 1 of 3) 11056 NM_010311 14687 Mm.393508 NM_010311 ENSMUSG00000040009 Gnaz AI847979|Gz guanine nucleotide binding protein, alpha z subunit 0.006410 0.541401 -7.053717 chrX-58 chrX 49397514 49397670 + 30.5 NA Intergenic Intergenic -38560 NM_019538 56096 Mm.274842 NM_019538 ENSMUSG00000061082 Plac1 DXWsu72e|Epcs26 placental specific protein 1 0.019231 0.369427 -4.785396 chr10-398 chr10 91126741 91126897 + 30.5 NA Intergenic Intergenic 375165 NR_029812 723955 NR_029812 Mir135a-2 Mirn135a-2 microRNA 135a-2 0.012821 0.388535 -0.294549 chr4-508 chr4 98758909 98759065 + 30.5 NA Intergenic Intergenic 72823 NM_001145967 242557 Mm.241663 NM_001145967 ENSMUSG00000028550 Atg4c Apg4-C|Apg4c|Atg4cl|Autl1 autophagy-related 4C (yeast) 0.019231 0.350318 4.772484 chr13-291 chr13 41660558 41660714 + 30.5 NA intron (NM_177808, intron 1 of 4) intron (NM_177808, intron 1 of 4) 220 NM_177808 328231 Mm.481831 NM_001145878 ENSMUSG00000054258 Gm5082 A030008J09|EG328231 predicted gene 5082 0.000000 0.471338 5.370134 chr10-344 chr10 42936499 42936655 + 30.5 NA intron (NM_001168289, intron 1 of 7) intron (NM_001168289, intron 1 of 7) 26677 NM_001168289 71365 Mm.363225 NM_001168289 ENSMUSG00000038240 Pdss2 5430420P03Rik|Gm60|Plmp|kd|mDLP1 prenyl (solanesyl) diphosphate synthase, subunit 2 0.019231 0.554140 -2.105194 chr3-466 chr3 155645403 155645559 + 30.5 NA Intergenic MTC-int|LTR|MaLR 616755 NM_028938 74435 Mm.195711 NM_028938 ENSMUSG00000028182 Lrriq3 4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44|MGC132959 leucine-rich repeats and IQ motif containing 3 0.000000 0.445860 -6.925322 chr17-321 chr17 26443138 26443294 + 30.5 NA promoter-TSS (NM_029870) promoter-TSS (NM_029870) -23 NM_029870 77128 Mm.275414 NM_029870 ENSMUSG00000048249 A930001N09Rik - RIKEN cDNA A930001N09 gene 0.108974 0.675159 -9.012932 chr2-564 chr2 101822734 101822890 + 30.5 NA intron (NM_178886, intron 4 of 5) intron (NM_178886, intron 4 of 5) 135712 NM_029635 76501 Mm.330424 NM_029635 ENSMUSG00000027163 Commd9 1810029F08Rik|AA409293 COMM domain containing 9 0.012821 0.426752 -3.991576 chr2-522 chr2 58979998 58980154 + 30.5 NA intron (NM_175464, intron 1 of 20) intron (NM_175464, intron 1 of 20) 18388 NM_175464 227937 Mm.260938 NM_026361 ENSMUSG00000026991 Pkp4 5031422I09Rik|9430019K17Rik|Armrp|MGC100358|MGC105166|p0071 plakophilin 4 0.012821 0.401274 2.593421 chr15-219 chr15 3945572 3945728 + 30.5 NA exon (NM_145930, exon 1 of 6) exon (NM_145930, exon 1 of 6) 102 NM_145930 106064 Mm.21299 NM_145930 ENSMUSG00000041935 AW549877 AI195826 expressed sequence AW549877 0.102564 0.700637 -8.785000 chr1-606 chr1 37219756 37219912 + 30.5 NA Intergenic Intergenic -24604 NM_030266 269180 Mm.5294 NM_030266 ENSMUSG00000026113 Inpp4a 107kDa|9630012D15|D130048C09Rik|R74740 inositol polyphosphate-4-phosphatase, type I 0.000000 0.490446 8.273591 chr5-568 chr5 23797408 23797564 + 30.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 29894 NR_030454 735274 NR_030454 Mir684-1 Mirn684-1 microRNA 684-1 0.006410 0.490446 6.225925 chr4-492 chr4 82092809 82092965 + 30.5 NA Intergenic Merlin1_HS|DNA|Merlin -116348 NM_008687 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.025641 0.458599 -2.900625 chr3-428 chr3 119055342 119055498 + 30.5 NA intron (NM_170778, intron 13 of 22) intron (NM_170778, intron 13 of 22) 501239 NM_170778 99586 Mm.27907 NM_170778 ENSMUSG00000033308 Dpyd AI315208|DPD|E330028L06Rik|MGC37940 dihydropyrimidine dehydrogenase 0.019231 0.452229 -4.963181 chr15-221 chr15 7160830 7160986 + 30.5 NA intron (NM_178748, intron 19 of 21) intron (NM_178748, intron 19 of 21) 73152 NM_013584 16880 Mm.149720 NM_001113386 ENSMUSG00000054263 Lifr A230075M04Rik|AW061234|LIF leukemia inhibitory factor receptor 0.000000 0.439490 -0.837549 chrX-81 chrX 160394074 160394230 + 30.5 NA Intergenic L1_Mur2|LINE|L1 69456 NM_175027 237211 Mm.336317 NM_001146081 ENSMUSG00000047757 Fancb BC022692|MGC31411 Fanconi anemia, complementation group B 0.000000 0.452229 -5.808034 chr6-363 chr6 54209942 54210098 + 30.5 NA intron (NM_001163640, intron 7 of 12) intron (NM_001163640, intron 7 of 12) 7621 NM_023543 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.006410 0.477707 -5.046969 chr2-648 chr2 181064060 181064216 + 30.5 NA intron (NM_001003825, intron 1 of 15) intron (NM_001003825, intron 1 of 15) 495 NM_001006679 16536 Mm.440175 NM_001003824 ENSMUSG00000016346 Kcnq2 HNSPC|KQT2|Nmf134 potassium voltage-gated channel, subfamily Q, member 2 0.134615 0.726115 -4.351465 chr4-453 chr4 8883664 8883820 + 30.5 NA Intergenic Intergenic 265675 NM_001081417 320790 Mm.138792 NM_001081417 ENSMUSG00000041235 Chd7 A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|Lda|Mt|Obt|Todo|WBE1|Whi chromodomain helicase DNA binding protein 7 0.012821 0.452229 -0.610228 chr9-486 chr9 72328879 72329035 + 30.5 NA Intergenic Intergenic -1849 NM_001033536 319758 Mm.32081 NM_001033536 ENSMUSG00000037674 Rfx7 2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2 regulatory factor X, 7 0.051282 0.566879 0.295469 chr8-387 chr8 117834654 117834810 + 30.5 NA intron (NM_019573, intron 8 of 8) intron (NM_019573, intron 8 of 8) 509104 NM_019573 80707 Mm.440420 NM_019573 ENSMUSG00000004637 Wwox 5330426P09Rik|9030416C10Rik|WOX1 WW domain-containing oxidoreductase 0.012821 0.420382 -3.351397 chr10-381 chr10 81004187 81004343 + 30.5 NA promoter-TSS (NM_053254) promoter-TSS (NM_053254) -236 NM_053254 114606 Mm.206764 NM_053254 ENSMUSG00000034758 Tle6 1810057E06Rik|Grg6 transducin-like enhancer of split 6, homolog of Drosophila E(spl) 0.070513 0.573248 -3.775120 chr19-178 chr19 47009958 47010114 + 30.5 NA intron (NM_001164363, intron 1 of 17) intron (NM_001164363, intron 1 of 17) 5626 NM_029810 76952 Mm.40965 NM_001164363 ENSMUSG00000025041 Nt5c2 2010002I23Rik|CnII|Gmp|Nt5b|Pnt5|cN-II 5'-nucleotidase, cytosolic II 0.000000 0.414013 -1.067073 chr17-310 chr17 16289084 16289240 + 30.5 NA Intergenic L1_Mus1|LINE|L1 -479558 NM_001005358 449000 Mm.441077 NM_001005358 ENSMUSG00000067034 BC018101 - cDNA sequence BC018101 0.000000 0.388535 -2.697426 chr14-181 chr14 95231449 95231605 + 30.5 NA intron (NM_053105, intron 3 of 10) intron (NM_053105, intron 3 of 10) 170641 NM_053105 93688 Mm.308735 NM_053105 ENSMUSG00000022076 Klhl1 KIAA1490|mKIAA1490 kelch-like 1 (Drosophila) 0.000000 0.394904 -1.651486 chr12-495 chr12 108840585 108840741 + 30.5 NA Intergenic Intergenic -17798 NM_001043336 68519 Mm.236645 NM_001043335 ENSMUSG00000058070 Eml1 1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|MGC158992 echinoderm microtubule associated protein like 1 0.019231 0.547771 -3.418953 chr12-492 chr12 106232613 106232769 + 30.5 NA intron (NM_011112, intron 19 of 21) intron (NM_011112, intron 19 of 21) 46940 NM_011112 18789 Mm.255877 NM_011112 ENSMUSG00000021111 Papola Pap|PapIII|Plap poly (A) polymerase alpha 0.019231 0.433121 2.495187 chr15-305 chr15 101750230 101750386 + 30.5 NA intron (NM_008475, intron 2 of 8) intron (NM_008475, intron 2 of 8) 2461 NM_008475 16682 Mm.46425 NM_008475 ENSMUSG00000059668 Krt4 AW108092|K4|Krt-2.4|Krt2-4 keratin 4 0.000000 0.554140 -2.176225 chr14-177 chr14 73587556 73587712 + 30.5 NA intron (NM_001033439, intron 2 of 19) intron (NM_001033439, intron 2 of 19) 94398 NM_001033439 380916 Mm.288868 NM_001033439 ENSMUSG00000068015 Lrch1 4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016 leucine-rich repeats and calponin homology (CH) domain containing 1 0.012821 0.452229 -6.595184 chr11-535 chr11 71566004 71566160 + 30.5 NA promoter-TSS (NM_177618) promoter-TSS (NM_177618) -815 NM_177618 216881 Mm.48648 NM_177618 ENSMUSG00000020811 Wscd1 KIAA0523|MGC55022|mKIAA0523 WSC domain containing 1 0.012821 0.566879 -5.538450 chr6-416 chr6 99902234 99902390 + 30.5 NA Intergenic L1MCa|LINE|L1 -210457 NM_001170419 50501 Mm.87365 NM_001037539 ENSMUSG00000030069 Prok2 Bv8|PK2|Prok1 prokineticin 2 0.000000 0.414013 -5.313151 chr9-510 chr9 106335282 106335438 + 30.5 NA promoter-TSS (NM_145619) promoter-TSS (NM_145619) -49 NM_145620 27966 Mm.239997 NM_145620 ENSMUSG00000041506 Rrp9 55kDa|D19435|D9Wsu10e|MGC25949|Rnu3ip2|U3-55k RRP9, small subunit (SSU) processome component, homolog (yeast) 0.064103 0.636943 -6.407219 chr1-619 chr1 52119694 52119850 + 30.5 NA intron (NM_001081081, intron 14 of 17) intron (NM_001081081, intron 14 of 17) 55790 NM_009283 20846 Mm.277406 NM_009283 ENSMUSG00000026104 Stat1 2010005J02Rik|AA408197 signal transducer and activator of transcription 1 0.006410 0.318471 -3.151979 chr10-418 chr10 106149068 106149224 + 30.5 NA intron (NM_177373, intron 4 of 31) intron (NM_177373, intron 4 of 31) 274698 NM_177373 327814 Mm.391424 NM_177373 ENSMUSG00000053825 Ppfia2 5330438O12|B230207K17Rik|E130120L08Rik|KIAA4112|mKIAA4112 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 0.000000 0.407643 -5.380049 chr12-453 chr12 84521928 84522084 + 30.5 NA promoter-TSS (NM_027349) promoter-TSS (NM_027349) 25 NM_027349 67039 Mm.46005 NM_025930 ENSMUSG00000010608 Rbm25 2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7 RNA binding motif protein 25 0.102564 0.656051 -5.909849 chr5-588 chr5 38366062 38366218 + 30.5 NA intron (NM_026959, intron 1 of 10) intron (NM_026959, intron 1 of 10) 38657 NM_026959 71116 Mm.18959 NM_026959 ENSMUSG00000029125 Stx18 1810035L21Rik|4933425D03Rik|AU041562 syntaxin 18 0.006410 0.375796 -7.597470 chr7-304 chr7 24150671 24150827 + 30.5 NA intron (NM_199013, intron 1 of 2) intron (NM_199013, intron 1 of 2) 3693 NM_199013 210145 Mm.33811 NM_199013 ENSMUSG00000062028 Irgc1 F630044M05Rik|Gm1102|Gm474|Iigp5|Irgc immunity-related GTPase family, cinema 1 0.006410 0.541401 -1.876497 chr8-353 chr8 47823328 47823484 + 30.5 NA Intergenic Intergenic -29918 NM_173789 234219 Mm.145631 NM_173789 ENSMUSG00000047171 Helt A830086M02|Hesl|Mgn|megane Hey-like transcription factor (zebrafish) 0.000000 0.496815 0.776825 chr14-151 chr14 19136657 19136813 + 30.5 NA promoter-TSS (NM_027475) promoter-TSS (NM_027475) 22 NM_001177633 105428 Mm.480089 NM_001024512 ENSMUSG00000039599 Fam149b AA536717|AI428773|MGC32264|mKIAA0974 family with sequence similarity 149, member B 0.089744 0.617834 0.962161 chr15-258 chr15 57626562 57626718 + 30.5 NA intron (NM_199449, intron 2 of 3) intron (NM_199449, intron 2 of 3) 95861 NM_024207 67819 Mm.444431 NM_024207 ENSMUSG00000022365 Derl1 1110021N07Rik|AI195141|AW551338|Derlin-1 Der1-like domain family, member 1 0.025641 0.522293 -0.458540 chr8-369 chr8 75957579 75957735 + 30.5 NA intron (NM_010687, intron 5 of 14) intron (NM_010687, intron 5 of 14) 290971 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large BPFD#36|Gyltl1a|Mbp-1|Mbp1|enr|fg|froggy|mKIAA0609|myd like-glycosyltransferase 0.006410 0.496815 -4.038459 chr6-436 chr6 140693817 140693973 + 30.5 NA Intergenic Intergenic 107192 NM_009637 11569 Mm.479349 NM_001005605 ENSMUSG00000030232 Aebp2 AU023766|B230313N05Rik AE binding protein 2 0.000000 0.356688 -4.173034 chr11-481 chr11 6889556 6889712 + 30.5 NA Intergenic Intergenic -73857 NM_009622 432530 Mm.259733 NM_009622 ENSMUSG00000020431 Adcy1 AC1|D11Bwg1392e|I-AC|KIAA4070|brl|mKIAA4070 adenylate cyclase 1 0.012821 0.496815 4.414066 chr5-635 chr5 96424432 96424588 + 30.5 NA Intergenic Intergenic -22218 NM_144910 231464 Mm.384746 NM_144910 ENSMUSG00000034724 Cnot6l 4932442K20Rik|DKFZp434K098|MGC29037 CCR4-NOT transcription complex, subunit 6-like 0.000000 0.477707 -1.698387 chr6-384 chr6 84848256 84848412 + 30.5 NA intron (NM_177077, intron 8 of 21) intron (NM_177077, intron 8 of 21) 186837 NM_177077 75914 Mm.159621 XM_001479977 ENSMUSG00000033769 Exoc6b 4930569O18Rik|G430127E12Rik|KIAA0919|Sec15b|Sec15l2|mKIAA0919 exocyst complex component 6B 0.000000 0.464968 0.333490 chr4-531 chr4 109770798 109770954 + 30.5 NA intron (NM_001163397, intron 1 of 5) intron (NM_001163397, intron 1 of 5) 13890 NM_010488 15572 Mm.3970 NM_001038698 ENSMUSG00000028546 Elavl4 Elav|Hud|PNEM ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 0.006410 0.433121 -2.651961 chr8-422 chr8 130142627 130142783 + 30.5 NA intron (NM_001122850, intron 2 of 15) intron (NM_001122850, intron 2 of 15) -42996 NM_001013581 93742 Mm.299254 NM_001013580 ENSMUSG00000025812 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) 0.006410 0.382166 -5.046969 chr12-406 chr12 28951717 28951873 + 30.5 NA Intergenic Intergenic 182810 NM_001177964 68511 Mm.310284 XM_126879 ENSMUSG00000020633 1110015M06Rik - RIKEN cDNA 1110015M06 gene 0.006410 0.515924 -1.668050 chr17-344 chr17 34843885 34844041 + 30.5 NA promoter-TSS (NM_023179) promoter-TSS (NM_023179) -96 NM_010909 18038 Mm.300795 NM_010909 ENSMUSG00000042419 Nfkbil1 Def-7|IKBL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 0.083333 0.535032 8.934196 chr8-381 chr8 107622210 107622366 + 30.5 NA promoter-TSS (NM_001190330) promoter-TSS (NM_001190330) -843 NM_001190330 102022 Mm.212983 NM_001190330 ENSMUSG00000055730 Ces6 9130231C15Rik|AI266984 carboxylesterase 6 0.000000 0.439490 -1.572935 chr15-292 chr15 92733301 92733457 + 30.5 NA Intergenic Intergenic 308091 NM_001164594 239618 Mm.479306 XM_001481302 Pdzrn4 1110017D07Rik|KIAA3027|LNX4|SAMCAP3L|mKIAA3027 PDZ domain containing RING finger 4 0.000000 0.414013 -1.933603 chr1-646 chr1 72188798 72188954 + 30.5 NA Intergenic Intergenic 28646 NM_023523 111175 Mm.281738 NM_023523 ENSMUSG00000026189 Pecr 2400003B18Rik|TERP peroxisomal trans-2-enoyl-CoA reductase 0.012821 0.509554 1.425303 chr13-302 chr13 54638820 54638976 + 30.5 NA intron (NM_178397, intron 1 of 10) intron (NM_178397, intron 1 of 10) 7493 NM_178397 76577 Mm.194459 NM_178397 ENSMUSG00000025873 Faf2 2210404D11Rik|AI462440|Ubxd8|mKIAA0887 Fas associated factor family member 2 0.019231 0.452229 -5.085839 chr7-347 chr7 95841018 95841174 + 30.5 NA Intergenic Intergenic -244732 NM_011858 23966 Mm.391678 NM_011858 ENSMUSG00000048078 Odz4 Doc4|ELM2|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302 odd Oz/ten-m homolog 4 (Drosophila) 0.006410 0.484076 -4.268959 chr10-330 chr10 20779122 20779278 + 30.5 NA Intergenic Intergenic 48965 NM_001177776 52906 Mm.253280 NM_001177776 ENSMUSG00000019986 Ahi1 1700015F03Rik|Ahi-1|D10Bwg0629e Abelson helper integration site 1 0.012821 0.503185 -2.774391 chr2-555 chr2 84894302 84894458 + 30.5 NA Intergenic ID_B1|SINE|B4 -42818 NM_011784 23796 Mm.29368 NM_011784 ENSMUSG00000044338 Aplnr APJ|Agtrl1|msr/apj apelin receptor 0.000000 0.477707 0.356755 chr7-373 chr7 122149211 122149367 + 30.5 NA intron (NM_008855, intron 2 of 16) intron (NM_008855, intron 2 of 16) 69017 NM_008855 18751 Mm.446371 NM_008855 ENSMUSG00000052889 Prkcb A130082F03Rik|PKC-Beta|Pkcb|Prkcb1|Prkcb2 protein kinase C, beta 0.012821 0.426752 1.499669 chr8-379 chr8 98368185 98368341 + 30.5 NA intron (NM_009974, intron 2 of 11) intron (NM_009974, intron 2 of 11) 9686 NM_009974 13000 Mm.440348 NM_009974 ENSMUSG00000046707 Csnk2a2 1110035J23Rik|C77789|CK2 casein kinase 2, alpha prime polypeptide 0.019231 0.560510 -7.025671 chr9-519 chr9 115199179 115199335 + 30.5 NA Intergenic Intergenic -40138 NM_024222 68292 Mm.296158 NM_024222 ENSMUSG00000032437 Stt3b 1300006C19Rik|Simp STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) 0.032051 0.528662 -4.402884 chr2-525 chr2 64721147 64721303 + 30.5 NA intron (NM_016719, intron 9 of 13) intron (NM_016719, intron 9 of 13) 102380 NM_016719 50915 Mm.214554 NM_016719 ENSMUSG00000026888 Grb14 AI505286 growth factor receptor bound protein 14 0.025641 0.503185 1.172648 chr9-490 chr9 77338297 77338453 + 30.5 NA Intergenic Intergenic -7830 NM_001146048 214345 Mm.28534 NM_001146048 ENSMUSG00000032352 Lrrc1 A430093J20Rik|AU016091|D030059I21|KIAA4018|MGC90936|mKIAA4018 leucine rich repeat containing 1 0.012821 0.426752 -5.125227 chr11-513 chr11 54745391 54745547 + 30.5 NA promoter-TSS (NM_008161) promoter-TSS (NM_008161) -806 NM_001083929 14778 Mm.200916 NM_001083929 ENSMUSG00000018339 Gpx3 AA960521|EGPx|GPx|GSHPx-3|GSHPx-P glutathione peroxidase 3 0.006410 0.394904 -3.763922 chr3-448 chr3 142078821 142078977 + 30.5 NA Intergenic Intergenic -159261 NM_007560 12167 Mm.39089 NM_007560 ENSMUSG00000052430 Bmpr1b AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-IB|CFK-43a bone morphogenetic protein receptor, type 1B 0.000000 0.401274 -0.727115 chr5-658 chr5 113379819 113379975 + 30.5 NA intron (NM_172884, intron 1 of 7) intron (NM_172884, intron 1 of 7) 23719 NM_172884 243219 Mm.160131 NM_172884 ENSMUSG00000051339 2900026A02Rik 8430408O14Rik|A530094D01|AW539426|Gm449|KIAA1671|mKIAA1671 RIKEN cDNA 2900026A02 gene 0.012821 0.509554 0.854731 chr6-368 chr6 65503990 65504146 + 30.5 NA Intergenic Intergenic -15907 NM_001001495 414084 Mm.117558 NM_001001495 ENSMUSG00000044162 Tnip3 9030611K07Rik|ABIN-3|LIND|MGC129495 TNFAIP3 interacting protein 3 0.012821 0.464968 1.885369 chr17-374 chr17 64905094 64905250 + 30.5 NA Intergenic L1M1|LINE|L1 407233 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.012821 0.484076 -4.633866 chr2-507 chr2 49225671 49225827 + 30.5 NA Intergenic Intergenic -47745 NM_172663 227867 Mm.29167 NM_172663 ENSMUSG00000069495 Epc2 5830499L14|D2Ertd694e|DKFZp566F2124 enhancer of polycomb homolog 2 (Drosophila) 0.006410 0.452229 1.767827 chr12-479 chr12 101419713 101419869 + 30.5 NA intron (NM_026681, intron 3 of 29) intron (NM_026681, intron 3 of 29) 3052 NR_035421 100316805 NR_035421 Mir1190 mmu-mir-1190 microRNA mir-1190 0.012821 0.414013 -4.164510 chr1-627 chr1 60455822 60455978 + 30.5 NA intron (NM_001045513, intron 5 of 15) intron (NM_001045513, intron 5 of 15) 55411 NM_001045513 77300 Mm.440325 XM_001474998 ENSMUSG00000026014 Raph1 9430025M21Rik|C730009O10Rik Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 0.025641 0.426752 -5.496302 chr9-485 chr9 70650754 70650910 + 30.5 NA intron (NM_008280, intron 1 of 8) intron (NM_008280, intron 1 of 8) 83193 NM_008280 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl lipase, hepatic 0.006410 0.496815 -2.772156 chr9-527 chr9 118345183 118345339 + 30.5 NA Intergenic Intergenic -9754 NM_018748 54214 Mm.10409 NM_018748 ENSMUSG00000038708 Golga4 AI225887|AU019508|Olp-1 golgi autoantigen, golgin subfamily a, 4 0.000000 0.458599 -3.178923 chr3-457 chr3 147929134 147929290 + 30.5 NA Intergenic Intergenic 962809 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.038462 0.439490 3.603209 chr12-468 chr12 90622396 90622552 + 30.5 NA intron (NM_172544, intron 18 of 19) intron (NM_172544, intron 18 of 19) 521354 NM_010050 13371 Mm.408815 NM_010050 ENSMUSG00000007682 Dio2 5DII|AI324267|DIOII deiodinase, iodothyronine, type II 0.006410 0.343949 -3.890676 chr15-281 chr15 81686874 81687030 + 30.5 NA Intergenic CpG -1371 NM_020507 57259 Mm.323595 NM_020507 ENSMUSG00000048546 Tob2 2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663 transducer of ERBB2, 2 0.070513 0.515924 -2.139347 chr11-569 chr11 95983481 95983637 + 30.5 NA Intergenic B3|SINE|B2 -26891 NM_008267 15408 Mm.57221 NM_008267 ENSMUSG00000049604 Hoxb13 - homeobox B13 0.019231 0.484076 3.255327 chr10-357 chr10 70318534 70318690 + 30.5 NA Intergenic Intergenic 236322 NM_031397 83675 Mm.458090 NM_031397 ENSMUSG00000014329 Bicc1 Bic-C|MGC124370|bpk|jcpk bicaudal C homolog 1 (Drosophila) 0.019231 0.484076 -0.678825 chr9-493 chr9 80633832 80633988 + 30.5 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat -371630 NM_022016 63859 Mm.422780 NM_022016 ENSMUSG00000032343 Impg1 A930015H12Rik|IMP150|SPACR interphotoreceptor matrix proteoglycan 1 0.000000 0.426752 -8.095812 chr12-518 chr12 119870037 119870193 + 30.5 NA Intergenic Intergenic -17396 NM_001163136 238455 Mm.31376 XM_138397 ENSMUSG00000041886 Macc1 4732474O15Rik|Gm267 metastasis associated in colon cancer 1 0.000000 0.445860 -3.306578 chr12-500 chr12 110106347 110106503 + 30.5 NA intron (NR_028261, intron 19 of 20) intron (NR_028261, intron 19 of 20) 3978 NR_028433 100303646 NR_028433 AF357355 MBII-343 snoRNA AF357355 0.012821 0.350318 3.557602 chr9-445 chr9 51281733 51281889 + 30.5 NA Intergenic Intergenic -200664 NM_027217 69809 Mm.75315 XM_134800 ENSMUSG00000036027 1810046K07Rik - RIKEN cDNA 1810046K07 gene 0.000000 0.363057 1.736468 chr12-408 chr12 30288839 30288995 + 30.5 NA intron (NM_001093775, intron 3 of 24) intron (NM_001093775, intron 3 of 24) 167907 NM_001093776 17933 Mm.418721 XM_001480703 ENSMUSG00000061911 Myt1l 2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106 myelin transcription factor 1-like 0.025641 0.515924 1.360953 chr11-558 chr11 87278721 87278877 + 30.5 NA intron (NM_031386, intron 2 of 30) intron (NM_031386, intron 2 of 30) 57540 NM_031386 83560 Mm.440758 NM_031386 ENSMUSG00000010342 Tex14 C85585 testis expressed gene 14 0.006410 0.343949 -4.074277 chr4-551 chr4 126792103 126792259 + 30.5 NA Intergenic Intergenic 24101 NM_008120 14612 Mm.24615 NM_008120 ENSMUSG00000050234 Gja4 AU020209|AW558810|Cnx37|Cx37|Gja-4 gap junction protein, alpha 4 0.012821 0.484076 10.961727 chr2-643 chr2 179219999 179220155 + 30.5 NA Intergenic Intergenic -151808 NM_009867 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-cadherin|Rcad cadherin 4 0.019231 0.445860 -6.767683 chr13-298 chr13 49453046 49453202 + 30.5 NA intron (NM_199056, intron 6 of 12) intron (NM_199056, intron 6 of 12) 19877 NM_199056 75678 Mm.390586 NM_199056 ENSMUSG00000021385 Ippk 1810043M15Rik|InsP6 inositol 1,3,4,5,6-pentakisphosphate 2-kinase 0.012821 0.414013 3.275154 chr5-591 chr5 44129944 44130100 + 30.5 NA intron (NM_009763, intron 8 of 8) intron (NM_009763, intron 8 of 8) 22882 NM_009763 12182 Mm.246332 NM_009763 ENSMUSG00000029082 Bst1 114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65 bone marrow stromal cell antigen 1 0.012821 0.484076 -1.100099 chr4-526 chr4 108339991 108340147 + 30.5 NA intron (NM_025334, intron 1 of 6) intron (NM_025334, intron 1 of 6) -5719 NM_029571 100087 Mm.440007 NM_029571 ENSMUSG00000073775 Kti12 1110001A12Rik|AI326810|AU014758 KTI12 homolog, chromatin associated (S. cerevisiae) 0.019231 0.484076 -3.550962 chr6-358 chr6 51302216 51302372 + 30.5 NA Intergenic MER20|DNA|MER1_type -59958 NM_010903 18025 Mm.42138 NM_010903 ENSMUSG00000029832 Nfe2l3 Nrf3 nuclear factor, erythroid derived 2, like 3 0.012821 0.490446 -2.339369 chr12-410 chr12 32709057 32709213 + 30.5 NA Intergenic Intergenic -62609 NM_011158 19088 Mm.480655 NM_011158 ENSMUSG00000002997 Prkar2b AI451071|AW061005|Pkarb2|RII(beta) protein kinase, cAMP dependent regulatory, type II beta 0.006410 0.509554 1.803050 chr5-610 chr5 68441870 68442026 + 30.5 NA intron (NM_001018019, intron 3 of 3) intron (NM_001018019, intron 3 of 3) 130979 NM_001018019 433899 Mm.332422 NM_001018019 ENSMUSG00000068082 Grxcr1 Tg(Eno2-Gabrb3)0370Brll|pi|tde glutaredoxin, cysteine rich 1 0.000000 0.331210 -7.798133 chr3-410 chr3 104587507 104587663 + 30.5 NA intron (NM_001025067, intron 17 of 17) intron (NM_001025067, intron 17 of 17) 53332 NM_001025067 269473 Mm.34855 NM_001025067 ENSMUSG00000032913 Lrig2 4632419I10Rik|BB096938 leucine-rich repeats and immunoglobulin-like domains 2 0.000000 0.420382 -8.582296 chr16-253 chr16 33240617 33240773 + 30.5 NA Intergenic Intergenic -59826 NM_011749 22661 Mm.392667 NM_011749 ENSMUSG00000022811 Zfp148 2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148 zinc finger protein 148 0.000000 0.452229 -2.556221 chr4-466 chr4 39174330 39174486 + 30.5 NA Intergenic (GAA)n|Simple_repeat|Simple_repeat -464555 NM_001081095 75471 Mm.23522 NM_001081095 ENSMUSG00000028287 1700009N14Rik AI429145 RIKEN cDNA 1700009N14 gene 0.000000 0.356688 -4.935753 chr11-619 chr11 117128750 117128906 + 30.5 NA intron (NM_001113486, intron 3 of 11) intron (NM_001113486, intron 3 of 11) -18976 NM_017380 53860 Mm.451420 NM_001113486 ENSMUSG00000059248 Sept9 MSF1|Msf|PNUTL4|Sint1 septin 9 0.019231 0.624204 0.924346 chr4-584 chr4 151722914 151723070 + 30.5 NA Intergenic Intergenic 181653 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.057692 0.496815 -3.413388 chr15-263 chr15 62158366 62158522 + 30.5 NA Intergenic Intergenic -109327 NR_003523 67552 Mm.4608 NR_003523 H2afy3 4933432H23Rik H2A histone family, member Y3 0.025641 0.458599 -2.990775 chr4-566 chr4 140051904 140052060 + 30.5 NA Intergenic Intergenic -5703 NM_011061 18602 Mm.250358 NM_011061 ENSMUSG00000025330 Padi4 Pdi4 peptidyl arginine deiminase, type IV 0.006410 0.535032 -5.568028 chr4-560 chr4 136076137 136076293 + 30.5 NA intron (NM_010142, intron 1 of 15) intron (NM_010142, intron 1 of 15) 31796 NM_010142 13844 Mm.250981 NM_010142 ENSMUSG00000028664 Ephb2 Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5 Eph receptor B2 0.012821 0.541401 -2.122704 chr6-327 chr6 3151432 3151588 + 30.5 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA 198061 NM_010156 209086 Mm.196013 XM_620286 ENSMUSG00000047735 Samd9l AA175286|ESTM25|mKIAA2005 sterile alpha motif domain containing 9-like 0.096154 0.515924 -6.672337 chr11-627 chr11 119499892 119500048 + 30.5 NA intron (NM_028898, intron 3 of 33) intron (NM_028898, intron 3 of 33) 80886 NM_028898 74370 Mm.209933 NM_028898 ENSMUSG00000025583 Rptor 4932417H02Rik|Raptor|mKIAA1303 regulatory associated protein of MTOR, complex 1 0.006410 0.471338 -2.101136 chr6-404 chr6 94152104 94152260 + 30.5 NA intron (NM_001029850, intron 1 of 23) intron (NM_001029850, intron 1 of 23) 97185 NM_010367 14924 Mm.217216 NM_001029850 ENSMUSG00000045095 Magi1 AIP3|BAP1|Baiap1|Gukmi1|KIAA4129|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129 membrane associated guanylate kinase, WW and PDZ domain containing 1 0.025641 0.458599 -3.151335 chr12-437 chr12 72325983 72326139 + 30.5 NA Intergenic Intergenic 97573 NM_001190466 59036 Mm.46662 NM_001190466 ENSMUSG00000044548 Dact1 4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3 dapper homolog 1, antagonist of beta-catenin (xenopus) 0.006410 0.420382 1.813594 chr10-376 chr10 80164417 80164573 + 30.5 NA intron (NM_199322, intron 1 of 27) intron (NM_199322, intron 1 of 27) 6161 NM_199322 208266 Mm.393160 NM_199322 ENSMUSG00000061589 Dot1l A630076O07|AW907654|Dot1|KMT4|mDot1 DOT1-like, histone H3 methyltransferase (S. cerevisiae) 0.000000 0.535032 -0.588099 chr11-542 chr11 77937543 77937699 + 30.5 NA intron (NM_145430, intron 1 of 2) intron (NM_145430, intron 1 of 2) 26754 NM_145430 216971 Mm.119387 NM_145430 ENSMUSG00000037750 BC017647 9630020I17Rik|MGC28990 cDNA sequence BC017647 0.019231 0.445860 -3.719918 chr5-690 chr5 132933500 132933656 + 30.5 NA Intergenic Intergenic -106532 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.000000 0.528662 -6.601103 chr2-621 chr2 165861540 165861696 + 30.5 NA Intergenic Intergenic -14757 NM_028072 72043 Mm.1011 NM_028072 ENSMUSG00000006800 Sulf2 2010004N24Rik|AU020235|mKIAA1247 sulfatase 2 0.025641 0.547771 -0.315958 chr12-398 chr12 25552865 25553021 + 30.5 NA Intergenic Intergenic -11067 NM_001081378 77480 Mm.475357 NM_001081378 ENSMUSG00000036333 Kidins220 3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250 kinase D-interacting substrate 220 0.038462 0.522293 -2.658132 chr2-591 chr2 131746964 131747120 + 30.5 NA 3' UTR (NM_018824, exon 16 of 16) 3' UTR (NM_018824, exon 16 of 16) -25613 NM_175445 215653 Mm.204737 NM_175445 ENSMUSG00000027339 Rassf2 3830431H01Rik|9030412M04Rik|AI852669|AW495050 Ras association (RalGDS/AF-6) domain family member 2 0.006410 0.426752 -4.506292 chr1-691 chr1 95904733 95904889 + 30.5 NA Intergenic Intergenic -21852 NM_008798 18566 Mm.5024 NM_008798 ENSMUSG00000026285 Pdcd1 Ly101|PD-1|Pdc1 programmed cell death 1 0.019231 0.477707 -5.418205 chr8-423 chr8 131146324 131146480 + 30.5 NA Intergenic Intergenic -98760 NM_008737 18186 Mm.271745 NM_008737 ENSMUSG00000025810 Nrp1 C530029I03|NP-1|NPN-1|Npn1|Nrp neuropilin 1 0.000000 0.445860 -2.721684 chr8-332 chr8 14838576 14838732 + 30.5 NA intron (NM_001145965, intron 12 of 14) intron (NM_001145965, intron 12 of 14) -49858 NM_012000 26889 Mm.467756 NM_012000 ENSMUSG00000026317 Cln8 mnd ceroid-lipofuscinosis, neuronal 8 0.006410 0.464968 -8.338817 chr2-495 chr2 34648202 34648358 + 30.5 NA promoter-TSS (NM_001164772) promoter-TSS (NM_001164772) -36 NM_001164772 30050 Mm.4465 NM_001164768 ENSMUSG00000035949 Fbxw2 2700071L08Rik|FBW2|Fwd2|MD6 F-box and WD-40 domain protein 2 0.102564 0.668790 -1.760966 chr11-590 chr11 102191417 102191573 + 30.5 NA Intergenic Intergenic -10124 NM_011403 20533 Mm.7248 NM_011403 ENSMUSG00000006574 Slc4a1 Ae1|CD233|Empb3|l11Jus51 solute carrier family 4 (anion exchanger), member 1 0.006410 0.535032 -6.214544 chr18-237 chr18 38286093 38286249 + 30.5 NA Intergenic Intergenic 49565 NM_029357 75599 Mm.458851 NM_029357 ENSMUSG00000051375 Pcdh1 2010005A06Rik|AI585920 protocadherin 1 0.006410 0.515924 -0.237791 chr9-536 chr9 120995667 120995823 + 30.5 NA intron (NM_177589, intron 27 of 36) intron (NM_177589, intron 27 of 36) 130125 NM_177589 209012 Mm.371804 XM_001479566 ENSMUSG00000040936 Ulk4 4932415A06Rik|A730098P15 unc-51-like kinase 4 (C. elegans) 0.006410 0.445860 -2.951216 chr1-608 chr1 37485742 37485898 + 30.5 NA Intergenic Intergenic -5015 NM_173870 269181 Mm.447744 NM_173870 ENSMUSG00000026110 Mgat4a 9530018I07Rik|GnT-IVa mannoside acetylglucosaminyltransferase 4, isoenzyme A 0.057692 0.636943 -0.149027 chr1-660 chr1 75388544 75388700 + 30.5 NA exon (NM_178884, exon 1 of 20) exon (NM_178884, exon 1 of 20) 978 NM_178884 98733 Mm.411028 NM_178884 ENSMUSG00000026211 Obsl1 AW822216 obscurin-like 1 0.083333 0.643312 1.037048 chr11-580 chr11 98498723 98498750 + 30.5 NA promoter-TSS (NM_009439) promoter-TSS (NM_009439) 93 NM_009439 22123 Mm.12194 NM_009439 ENSMUSG00000017221 Psmd3 AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 0.037037 0.714286 -11.277625 chr3-419 chr3 108690421 108690577 + 30.5 NA promoter-TSS (NM_026198) promoter-TSS (NM_026198) 23 NM_026198 67495 Mm.32615 NM_026198 ENSMUSG00000068732 Tmem167b 2010200O16Rik transmembrane protein 167B 0.128205 0.617834 0.881896 chr2-608 chr2 153239645 153239801 + 30.5 NA Intergenic Intergenic -18311 NM_001134300 329540 Mm.50600 NM_001001986 ENSMUSG00000061411 8430427H17Rik 4931410H15|AI429157|Gm1636 RIKEN cDNA 8430427H17 gene 0.032051 0.547771 -4.767680 chr12-417 chr12 37868744 37868900 + 30.5 NA intron (NM_178767, intron 5 of 12) intron (NM_178767, intron 5 of 12) 116918 NM_178767 319660 Mm.211255 NM_178767 Tmem195 A530016O06Rik|AI790538 transmembrane protein 195 0.012821 0.414013 3.909233 chr15-238 chr15 34955985 34956141 + 30.5 NA intron (NM_019635, intron 6 of 10) intron (NM_019635, intron 6 of 10) 144332 NM_019635 56274 Mm.262330 NM_019635 ENSMUSG00000022329 Stk3 0610042I06Rik|MST|Mst2|Mst3|mess1 serine/threonine kinase 3 (Ste20, yeast homolog) 0.000000 0.375796 -6.376565 chr1-761 chr1 167572911 167573067 + 30.5 NA Intergenic Intergenic -27465 NM_011804 433375 Mm.468745 NM_011804 ENSMUSG00000040713 Creg1 AA755314|Creg cellular repressor of E1A-stimulated genes 1 0.032051 0.503185 -3.377869 chr17-368 chr17 56104409 56104565 + 30.5 NA intron (NM_011218, intron 1 of 32) intron (NM_011218, intron 1 of 32) 5701 NM_011218 19280 Mm.258771 NM_011218 ENSMUSG00000013236 Ptprs AL022616|MGC90571|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma protein tyrosine phosphatase, receptor type, S 0.019231 0.605096 -5.485522 chr5-628 chr5 85486628 85486784 + 30.5 NA intron (NM_007937, intron 1 of 15) intron (NM_007937, intron 1 of 15) 5237 NM_007937 13839 Mm.438006 NM_007937 ENSMUSG00000029245 Epha5 AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk Eph receptor A5 0.006410 0.337580 -1.733795 chr11-508 chr11 53289672 53289828 + 30.5 NA Intergenic Intergenic -10877 NM_027917 71774 Mm.274370 NM_027917 ENSMUSG00000018387 Shroom1 1300007L22Rik|Apx|Shrm1 shroom family member 1 0.044872 0.528662 -0.234331 chr1-670 chr1 82695058 82695214 + 30.5 NA Intergenic Intergenic -23370 NM_010472 15463 Mm.433409 NM_010472 ENSMUSG00000026159 Agfg1 AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip ArfGAP with FG repeats 1 0.019231 0.566879 -4.767301 chr15-252 chr15 43589130 43589286 + 30.5 NA Intergenic Intergenic 110895 NM_175502 239408 Mm.461451 NM_175502 ENSMUSG00000054409 Tmem74 AA549547|B230382K22Rik transmembrane protein 74 0.012821 0.356688 -5.636680 chr18-257 chr18 64963729 64963885 + 30.5 NA Intergenic Intergenic -49317 NM_001114386 83814 Mm.98668 NM_001114386 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b neural precursor cell expressed, developmentally down-regulated gene 4-like 0.000000 0.324841 -0.618703 chr9-451 chr9 55359187 55359343 + 30.5 NA intron (NM_001081341, intron 30 of 32) intron (NM_001081341, intron 30 of 32) 19980 NM_027397 104360 Mm.273996 NM_027397 ENSMUSG00000032318 Isl2 3110001N10Rik|MGC171130 insulin related protein 2 (islet 2) 0.000000 0.496815 -5.894456 chr12-511 chr12 113587883 113588039 + 30.5 NA promoter-TSS (NM_024223) promoter-TSS (NM_024223) -82 NM_024223 68337 Mm.133825 NM_024223 ENSMUSG00000006356 Crip2 0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp cysteine rich protein 2 0.134615 0.694268 -5.021327 chr17-375 chr17 64952480 64952636 + 30.5 NA Intergenic Intergenic 454619 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.019231 0.420382 3.725184 chr2-524 chr2 59247739 59247895 + 30.5 NA Intergenic Intergenic -37674 NM_029723 76747 Mm.275769 NM_029723 ENSMUSG00000026989 Dapl1 2310032F03Rik|EEDA death associated protein-like 1 0.000000 0.496815 4.015079 chr2-475 chr2 26160728 26160884 + 30.5 NA intron (NM_153410, intron 9 of 13) intron (NM_153410, intron 9 of 13) 13313 NM_026828 52838 Mm.31239 NM_001139503 ENSMUSG00000075467 Dnlz 1110034G11Rik|D2Bwg1335e DNL-type zinc finger 0.012821 0.585987 -5.296421 chr12-467 chr12 90083779 90083935 + 30.5 NA intron (NM_172544, intron 14 of 19) intron (NM_172544, intron 14 of 19) 616989 NM_172544 18191 Mm.477211 NM_172544 ENSMUSG00000066392 Nrxn3 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e neurexin III 0.006410 0.439490 1.439429 chr15-306 chr15 101846186 101846342 + 30.5 NA Intergenic Intergenic -9985 NM_010664 16668 Mm.22479 NM_010664 ENSMUSG00000023043 Krt18 CK18|K18|Krt1-18 keratin 18 0.019231 0.668790 -6.430132 chr5-576 chr5 28401013 28401169 + 30.5 NA Intergenic Intergenic -1107 NM_153526 231070 Mm.30221 NM_153526 ENSMUSG00000045294 Insig1 1810013C12Rik|Insig-1 insulin induced gene 1 0.012821 0.477707 -4.784324 chr17-380 chr17 79504466 79504622 + 30.5 NA Intergenic Intergenic -18681 NM_201361 381110 Mm.449995 NM_201361 ENSMUSG00000036368 Fam82a1 AW061290|MGC37733|mRMD-2 family with sequence similarity 82, member A1 0.019231 0.407643 3.067963 chr3-379 chr3 52095722 52095878 + 30.5 NA intron (NM_001004176, intron 1 of 4) intron (NM_001004176, intron 1 of 4) 97135 NM_001004176 433586 Mm.481431 NM_001004176 ENSMUSG00000061143 Maml3 AV234550|BC049812|KIAA1816|MGC59565|Mam-2|mKIAA1816 mastermind like 3 (Drosophila) 0.057692 0.585987 -7.447692 chr13-281 chr13 29633103 29633259 + 30.5 NA exon (NM_144536, exon 9 of 16) exon (NM_144536, exon 9 of 16) 229872 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.019231 0.464968 -2.190550 chr17-309 chr17 14017730 14017886 + 30.5 NA intron (NM_022315, intron 1 of 12) intron (NM_022315, intron 1 of 12) 1706 NM_022315 64074 Mm.30162 NM_022315 ENSMUSG00000023886 Smoc2 1700056C05Rik|5430426J21Rik|Smoc2l SPARC related modular calcium binding 2 0.012821 0.414013 -3.470736 chr4-590 chr4 152662964 152663120 + 30.5 NA Intergenic Intergenic -137994 NM_175287 97159 Mm.7066 NM_001163019 ENSMUSG00000047613 A430005L14Rik C79672 RIKEN cDNA A430005L14 gene 0.025641 0.471338 -2.769101 chr1-783 chr1 185809629 185809785 + 30.5 NA Intergenic Lx8|LINE|L1 73991 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5 dual specificity phosphatase 10 0.006410 0.388535 -1.550643 chr6-362 chr6 54178549 54178705 + 30.5 NA intron (NM_001163640, intron 6 of 12) intron (NM_001163640, intron 6 of 12) -23772 NM_023543 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.012821 0.490446 -4.113583 chr4-601 chr4 154496939 154497095 + 30.5 NA 5' UTR (NM_011985, exon 1 of 8) 5' UTR (NM_011985, exon 1 of 8) 167 NM_011985 26561 Mm.29373 NM_011985 ENSMUSG00000029061 Mmp23 CA-MMP|MGC130334|MGC130335 matrix metallopeptidase 23 0.115385 0.719745 -8.404913 chr8-397 chr8 123302478 123302634 + 30.5 NA Intergenic Intergenic -72286 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.057692 0.617834 -7.043433 chr15-272 chr15 75965047 75965203 + 30.5 NA Intergenic MLT1C|LTR|MaLR -11314 NM_001142968 271278 Mm.205253 NM_001142968 BC024139 6230424I18Rik|MGC37978 cDNA sequence BC024139 0.000000 0.471338 -1.570842 chr6-387 chr6 87754900 87755056 + 30.5 NA 3' UTR (NM_133717, exon 3 of 3) 3' UTR (NM_133717, exon 3 of 3) 11202 NM_018762 54368 Mm.12897 NM_018762 ENSMUSG00000030054 Gp9 Cd42|GPIX|MGC130579 glycoprotein 9 (platelet) 0.000000 0.566879 -4.341987 chr8-392 chr8 122771708 122771864 + 30.5 NA Intergenic Intergenic 23505 NM_146219 234796 Mm.86446 NM_146219 ENSMUSG00000031828 Klhl36 MGC37805 kelch-like 36 (Drosophila) 0.006410 0.598726 -4.285807 chr11-484 chr11 8911052 8911208 + 30.5 NA promoter-TSS (NM_008316) promoter-TSS (NM_008316) 10 NM_008316 15574 Mm.42201 NM_008316 ENSMUSG00000020413 Hus1 mHus1 Hus1 homolog (S. pombe) 0.096154 0.630573 -6.381931 chr5-734 chr5 149388808 149388964 + 30.5 NA Intergenic Intergenic -25500 NM_010439 15289 Mm.313345 NM_010439 ENSMUSG00000066551 Hmgb1 DEF|HMG-1|Hmg1|MGC103168|MGC103169|MGC117896|MGC117897|SBP-1|amphoterin|p30 high mobility group box 1 0.019231 0.484076 -0.994253 chr5-723 chr5 141944030 141944186 + 30.5 NA intron (NM_177879, intron 4 of 44) intron (NM_177879, intron 4 of 44) 450101 NM_177879 330222 Mm.406697 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik sidekick homolog 1 (chicken) 0.019231 0.528662 -4.135635 chr13-324 chr13 75510987 75511143 + 30.5 NA Intergenic Intergenic -44923 NM_013628 18548 Mm.1333 NM_013628 ENSMUSG00000021587 Pcsk1 MGC124320|MGC124321|Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3 proprotein convertase subtilisin/kexin type 1 0.012821 0.350318 -6.990921 chr13-332 chr13 98758710 98758866 + 30.5 NA Intergenic Intergenic 416985 NM_007930 13803 Mm.481214 NM_007930 ENSMUSG00000041773 Enc1 Nrpb|PIG10 ectodermal-neural cortex 1 0.006410 0.458599 -0.688279 chr15-243 chr15 36724236 36724392 + 30.5 NA intron (NM_011740, intron 3 of 6) intron (NM_011740, intron 3 of 6) 14813 NM_011740 22631 Mm.3360 NM_011740 ENSMUSG00000022285 Ywhaz 1110013I11Rik|AI596267|AL022924|AU020854 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 0.006410 0.503185 4.381131 chr5-684 chr5 129185460 129185616 + 30.5 NA intron (NM_001081388, intron 1 of 21) intron (NM_001081388, intron 1 of 21) 82532 NM_001081388 231760 Mm.233996 NM_001081388 ENSMUSG00000029420 Rimbp2 A930033C01Rik|mKIAA0318 RIMS binding protein 2 0.006410 0.420382 -3.307542 chr1-707 chr1 129364206 129364362 + 30.5 NA intron (NM_028135, intron 4 of 7) intron (NM_028135, intron 4 of 7) 141283 NM_028135 72160 Mm.281287 NM_028135 ENSMUSG00000026347 Tmem163 2610024A01Rik|SV31 transmembrane protein 163 0.006410 0.528662 -3.135247 chr2-638 chr2 178698434 178698590 + 30.5 NA Intergenic Intergenic 338498 NM_198656 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010|MGC56946 cadherin-like 26 0.006410 0.496815 -4.754305 chr9-412 chr9 13857440 13857596 + 30.5 NA Intergenic MLT1A|LTR|MaLR -169179 NM_030261 75747 Mm.439776 NM_030261 ENSMUSG00000032009 Sesn3 5630400E15Rik|BC003348|MGC7182|SEST3 sestrin 3 0.012821 0.452229 -2.962611 chr13-269 chr13 23474512 23474668 + 30.5 NA Intergenic tRNA-Tyr-TAC|tRNA|tRNA -1224 NM_013483 12231 Mm.1420 NM_013483 ENSMUSG00000000706 Btn1a1 Btn butyrophilin, subfamily 1, member A1 0.051282 0.477707 -0.360927 chr2-464 chr2 7212727 7212883 + 30.5 NA intron (NM_001110231, intron 2 of 15) intron (NM_001110231, intron 2 of 15) 101048 NM_001110232 14007 Mm.411896 NM_001110228 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 0.000000 0.394904 -3.746036 chr14-146 chr14 11799789 11799945 + 30.5 NA Intergenic Intergenic -183521 NM_012061 27062 Mm.260881 NM_001042617 ENSMUSG00000054423 Cadps AU067781|CAPS|CAPS1|MGC90712|mKIAA1121 Ca2+-dependent secretion activator 0.006410 0.464968 -5.732002 chr15-282 chr15 82033562 82033718 + 30.5 NA Intergenic Intergenic 8264 NR_029804 723897 NR_029804 Mir33 Mirn33|mmu-mir-33 microRNA 33 0.025641 0.598726 0.427378 chr1-610 chr1 38054446 38054602 + 30.5 NA intron (NM_019570, intron 1 of 22) intron (NM_019570, intron 1 of 22) 19684 NM_019570 56210 Mm.389103 NM_019570 ENSMUSG00000026082 Rev1 1110027I23Rik|AU022044|MGC66950|Rev1l REV1 homolog (S. cerevisiae) 0.025641 0.541401 -1.651486 chr13-339 chr13 103054327 103054483 + 30.5 NA Intergenic Intergenic -185931 NM_001077495 18708 Mm.259333 NM_001024955 ENSMUSG00000041417 Pik3r1 AA414921|C530050K14|PI3K|p50alpha|p55alpha|p85alpha phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) 0.006410 0.420382 -4.774666 chr2-548 chr2 78452560 78452716 + 30.5 NA Intergenic Intergenic -217247 NM_009454 22193 Mm.393087 NM_009454 ENSMUSG00000027011 Ube2e3 Ubce4|ubcM2 ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast) 0.006410 0.356688 -0.256527 chr18-225 chr18 17281443 17281599 + 30.5 NA Intergenic Intergenic 96979 NR_033607 664619 Mm.250005 NR_033607 4921533I20Rik - Riken cDNA 4921533I20 gene 0.000000 0.350318 -4.853086 chr12-510 chr12 113385957 113386113 + 30.5 NA intron (NM_025399, intron 4 of 4) intron (NM_025399, intron 4 of 4) 3891 NM_025399 66174 Mm.7070 NM_025399 ENSMUSG00000002804 Nudt14 1110030M18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 14 0.025641 0.662420 -3.798460 chr12-427 chr12 53718721 53718877 + 30.5 NA intron (NM_198111, intron 2 of 13) intron (NM_198111, intron 2 of 13) 97797 NM_198111 238161 Mm.310822 NM_198111 ENSMUSG00000061603 Akap6 AI482140|Akapalpha|Akapbeta|MGC73457|PRKA A kinase (PRKA) anchor protein 6 0.012821 0.452229 -2.490685 chr8-373 chr8 87730746 87730902 + 30.5 NA promoter-TSS (NM_009010) promoter-TSS (NM_009010) -78 NM_009010 19358 Mm.255539 NM_009010 ENSMUSG00000003813 Rad23a 2310040P19Rik|AL024030|HR23A|mHR23A RAD23a homolog (S. cerevisiae) 0.096154 0.630573 -5.698059 chr1-756 chr1 166341906 166342062 + 30.5 NA Intergenic Intergenic -46954 NM_009721 11931 Mm.4550 NM_009721 ENSMUSG00000026576 Atp1b1 Atpb|Atpb-1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.012821 0.445860 4.342497 chr11-587 chr11 101768984 101769140 + 30.5 NA Intergenic Intergenic 14043 NM_024449 74499 Mm.265602 NM_024449 ENSMUSG00000001494 Sost 5430411E23Rik sclerostin 0.044872 0.541401 -0.176556 chr3-429 chr3 119948101 119948257 + 30.5 NA Intergenic Intergenic -172787 NM_019550 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 0.006410 0.420382 4.296466 chr9-535 chr9 120715060 120715216 + 30.5 NA Intergenic L2|LINE|L2 -66959 NM_007614 12387 Mm.291928 NM_001165902 ENSMUSG00000006932 Ctnnb1 Catnb|Mesc catenin (cadherin associated protein), beta 1 0.019231 0.566879 -3.725264 chr11-538 chr11 74305435 74305591 + 30.5 NA intron (NM_001015046, intron 2 of 24) intron (NM_001015046, intron 2 of 24) 100840 NM_001015046 380711 Mm.425690 NM_001015046 ENSMUSG00000038807 Rap1gap2 AU067654|Garnl4|Gm1561|MGC130388|RP23-20M18.15|mKIAA1039 RAP1 GTPase activating protein 2 0.006410 0.420382 -3.789036 chr1-775 chr1 180849064 180849220 + 30.5 NA intron (NM_027188, intron 10 of 11) intron (NM_027188, intron 10 of 11) 483343 NM_001161665 269152 Mm.138659 NM_001161665 ENSMUSG00000026494 Kif26b 4832420M10|BC056349|D230039L06Rik|MGC156028|MGC169313 kinesin family member 26B 0.006410 0.509554 -1.695789 chr1-729 chr1 154059871 154060027 + 30.5 NA Intergenic Intergenic 88951 NM_025677 66637 Mm.379120 NM_025677 ENSMUSG00000014980 Tsen15 5730449L18Rik|AL023077|Sen15 tRNA splicing endonuclease 15 homolog (S. cerevisiae) 0.000000 0.388535 5.470685 chr5-650 chr5 106030142 106030298 + 30.5 NA intron (NM_001122768, intron 2 of 2) intron (NM_001122768, intron 2 of 2) -86649 NR_030777 54367 Mm.248876 NM_018759 ENSMUSG00000029290 Zfp326 5730470H14Rik|ZAN75|Znf326 zinc finger protein 326 0.006410 0.509554 -2.740509 chr3-440 chr3 131430682 131430838 + 30.5 NA Intergenic Intergenic -71313 NM_011863 23971 Mm.244912 NM_011863 ENSMUSG00000028032 Papss1 AI325286|Asapk|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 0.019231 0.363057 -6.766540 chr1-679 chr1 89822864 89823020 + 30.5 NA intron (NM_001033291, intron 8 of 27) intron (NM_001033291, intron 8 of 27) 16780 NM_001033291 227334 Mm.80484 NM_001033291 ENSMUSG00000005501 Usp40 B230215L03Rik|C730029K03 ubiquitin specific peptidase 40 0.012821 0.458599 0.126568 chr4-463 chr4 34740578 34740734 + 30.5 NA intron (NM_001007589, intron 1 of 4) intron (NM_001007589, intron 1 of 4) 1155 NM_001007589 433693 Mm.399624 NM_001007589 ENSMUSG00000028291 Akirin2 2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2|MGC90611 akirin 2 0.025641 0.484076 -1.933603 chr1-714 chr1 133026671 133026827 + 30.5 NA intron (NM_018750, intron 2 of 5) intron (NM_018750, intron 2 of 5) 45975 NM_018750 54354 Mm.248291 NM_018750 ENSMUSG00000026430 Rassf5 1300019G20Rik|AU042887|MGC107647|Maxp1|Nore1|Nore1A|Nore1B|Rapl Ras association (RalGDS/AF-6) domain family member 5 0.025641 0.560510 3.085520 chr11-496 chr11 29273548 29273704 + 30.5 NA promoter-TSS (NM_176841) promoter-TSS (NM_176841) -148 NM_176841 108686 Mm.441367 XM_001472349 ENSMUSG00000032740 Ccdc88a A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Hkrp1 coiled coil domain containing 88A 0.141026 0.764331 -9.195654 chr9-511 chr9 107137790 107137946 + 30.5 NA intron (NM_178907, intron 2 of 10) intron (NM_178907, intron 2 of 10) 10110 NM_178907 102626 Mm.445242 NM_178907 ENSMUSG00000032577 Mapkapk3 3PK|AI874665|MAPKAP3|MK3|MapkKapk3 mitogen-activated protein kinase-activated protein kinase 3 0.019231 0.573248 -5.251910 chr11-557 chr11 87259879 87259941 + 30.5 NA intron (NM_031386, intron 2 of 30) intron (NM_031386, intron 2 of 30) 38651 NM_031386 83560 Mm.440758 NM_031386 ENSMUSG00000010342 Tex14 C85585 testis expressed gene 14 0.000000 0.412698 -5.173823 chr7-346 chr7 92695158 92695314 + 30.5 NA exon (NM_029494, exon 2 of 5) exon (NM_029494, exon 2 of 5) 54188 NM_001080995 74041 Mm.26468 NM_001080995 ENSMUSG00000030641 4632434I11Rik noxin RIKEN cDNA 4632434I11 gene 0.019231 0.439490 -4.880674 chr2-473 chr2 25820117 25820273 + 30.5 NA 3' UTR (NM_133835, exon 10 of 10) 3' UTR (NM_133835, exon 10 of 10) -14904 NM_001115076 227634 Mm.36834 XM_129375 ENSMUSG00000026933 Camsap1 9530003A05Rik|C77823|PRO2405 calmodulin regulated spectrin-associated protein 1 0.006410 0.547771 -4.197162 chr2-614 chr2 158201489 158201645 + 30.5 NA Intergenic MLT1B|LTR|MaLR -2669 NM_001145015 545481 Mm.125371 XM_619836 ENSMUSG00000074625 Arhgap40 C20orf95|Gm14203|OTTMUSG00000015933 Rho GTPase activating protein 40 0.000000 0.458599 0.363158 chr15-237 chr15 34830840 34830996 + 30.5 NA intron (NM_019635, intron 10 of 10) intron (NM_019635, intron 10 of 10) 48949 NM_181317 16539 Mm.71045 NM_181317 ENSMUSG00000050963 Kcns2 E130006J24Rik|Kv9.2 K+ voltage-gated channel, subfamily S, 2 0.006410 0.394904 -4.760484 chr3-381 chr3 53589394 53589550 + 30.5 NA intron (NM_153156, intron 4 of 6) intron (NM_153156, intron 4 of 6) 12751 NM_153156 229277 Mm.222810 NM_153156 ENSMUSG00000027744 Stoml3 Epb7.2l|SLP3|sro stomatin (Epb7.2)-like 3 0.006410 0.547771 -11.672051 chr9-450 chr9 55350426 55350582 + 30.5 NA intron (NM_001081341, intron 32 of 32) intron (NM_001081341, intron 32 of 32) 11219 NM_027397 104360 Mm.273996 NM_027397 ENSMUSG00000032318 Isl2 3110001N10Rik|MGC171130 insulin related protein 2 (islet 2) 0.032051 0.490446 1.328212 chr7-362 chr7 117077202 117077358 + 30.5 NA Intergenic Intergenic -94847 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.019231 0.401274 -7.015755 chr3-432 chr3 121553374 121553530 + 30.5 NA Intergenic B4|SINE|B4 -29085 NM_145394 213603 Mm.33062 NM_145394 ENSMUSG00000039865 Slc44a3 BC010552|MGC18084|MGC38127 solute carrier family 44, member 3 0.006410 0.464968 -1.045784 chr17-315 chr17 23585591 23585747 + 30.5 NA intron (NM_027220, intron 4 of 4) intron (NM_027220, intron 4 of 4) 4276 NM_027220 69814 Mm.244143 NM_027220 ENSMUSG00000048992 Prss32 2010001P08Rik|mT5|tryptase-5 protease, serine, 32 0.006410 0.477707 -0.622579 chr17-339 chr17 31590865 31591021 + 30.5 NA Intergenic Intergenic -6441 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Msk|Sik|Snf1lk salt inducible kinase 1 0.019231 0.573248 -1.918237 chr8-363 chr8 72761509 72761665 + 30.5 NA promoter-TSS (NM_001024954) promoter-TSS (NM_001024954) -105 NM_001024954 80720 Mm.417606 NM_001024954 ENSMUSG00000031860 Pbx4 2410015M21Rik|AI429113|AW045266 pre-B-cell leukemia homeobox 4 0.096154 0.617834 -0.950495 chr12-449 chr12 80661160 80661316 + 30.5 NA intron (NM_009014, intron 8 of 10) intron (NM_009014, intron 8 of 10) 370615 NM_007564 12192 Mm.235132 NM_007564 ENSMUSG00000021127 Zfp36l1 AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1 zinc finger protein 36, C3H type-like 1 0.025641 0.503185 -3.082390 chr10-402 chr10 93248515 93248671 + 30.5 NA Intergenic Intergenic -12760 NM_183199 327799 Mm.276331 NM_183199 ENSMUSG00000020020 Usp44 E430004F17Rik ubiquitin specific peptidase 44 0.006410 0.452229 -1.549595 chr5-686 chr5 130364097 130364236 + 30.5 NA promoter-TSS (NM_001130476) promoter-TSS (NM_001130476) -22 NM_001130476 22021 Mm.332720 NM_001130476 ENSMUSG00000034118 Tpst1 R75054 protein-tyrosine sulfotransferase 1 0.172662 0.800000 -11.283803 chr15-307 chr15 102915316 102915472 + 30.5 NA Intergenic L2|LINE|L2 52966 NM_013553 15423 Mm.1351 NM_013553 ENSMUSG00000075394 Hoxc4 Hox-3.5 homeobox C4 0.019231 0.515924 -5.192185 chr3-399 chr3 95631923 95632079 + 30.5 NA intron (NM_021281, intron 5 of 7) intron (NM_021281, intron 5 of 7) -13079 NM_026489 67981 Mm.179050 NM_026489 ENSMUSG00000028109 Hormad1 4921522K05Rik|Nohma HORMA domain containing 1 0.006410 0.535032 3.974607 chr4-571 chr4 146918704 146918860 + 30.5 NA Intergenic Intergenic 13082 NM_009642 11610 Mm.46247 NM_009642 ENSMUSG00000029007 Agtrap 3300002E14Rik|AT1R|Atrap|D4Wsu124e angiotensin II, type I receptor-associated protein 0.032051 0.522293 -4.290058 chr5-647 chr5 103078359 103078515 + 30.5 NA intron (NM_029270, intron 3 of 9) intron (NM_029270, intron 3 of 9) 356745 NM_029270 231532 Mm.477263 NM_029270 ENSMUSG00000057315 Arhgap24 0610025G21Rik|MGC38749 Rho GTPase activating protein 24 0.025641 0.369427 -1.382010 chr2-625 chr2 166754348 166754504 + 30.5 NA promoter-TSS (NM_001033196) promoter-TSS (NM_001033196) -206 NM_001033196 98999 Mm.297074 NM_001033196 ENSMUSG00000039501 Znfx1 AI481105 zinc finger, NFX1-type containing 1 0.121795 0.611465 -2.893797 chr9-426 chr9 31030372 31030528 + 30.5 NA Intergenic CpG 5988 NM_001101597 638580 Mm.373655 XM_914651 Gm7244 EG638580 predicted gene 7244 0.083333 0.700637 -4.275768 chr10-372 chr10 79340406 79340562 + 30.5 NA intron (NM_007880, intron 3 of 8) intron (NM_007880, intron 3 of 8) 10284 NM_007880 13496 Mm.301282 NM_007880 ENSMUSG00000019564 Arid3a Bright|Dri1|Dril1 AT rich interactive domain 3A (BRIGHT-like) 0.064103 0.649682 -7.875663 chr17-334 chr17 29904542 29904698 + 30.5 NA intron (NM_148926, intron 3 of 4) intron (NM_148926, intron 3 of 4) 172522 NM_148926 21769 Mm.220972 NM_148926 ENSMUSG00000044477 Zfand3 AW539211|MGC103362|MGC118625|TEG-27|Tex27 zinc finger, AN1-type domain 3 0.012821 0.560510 -3.407388 chr4-563 chr4 136431629 136431785 + 30.5 NA Intergenic Intergenic -110936 NM_198248 230848 Mm.31068 NM_198248 ENSMUSG00000060862 Zbtb40 BC059177|C230087D24|Gm571|MGC62412|mKIAA0478 zinc finger and BTB domain containing 40 0.038462 0.515924 -4.738925 chr2-598 chr2 143873664 143873820 + 30.5 NA Intergenic MER44B|DNA|MER2_type 83901 NR_030762 100313519 Mm.453538 NR_030762 Snord17 MBI-43 small nucleolar RNA, C/D box 17 0.012821 0.496815 -7.583576 chr7-315 chr7 43653337 43653493 + 30.5 NA TTS (NM_133712) TTS (NM_133712) 4320 NM_133712 69540 Mm.46421 NM_133712 ENSMUSG00000030693 Klk10 2300002A13Rik|NES1|PRSSL1 kallikrein related-peptidase 10 0.000000 0.433121 -3.105729 chr7-369 chr7 120708665 120708821 + 30.5 NA promoter-TSS (NM_025298) promoter-TSS (NM_025298) -149 NM_025298 26939 Mm.193632 NM_001164096 ENSMUSG00000030880 Polr3e RPC5|Sin polymerase (RNA) III (DNA directed) polypeptide E 0.083333 0.611465 -7.527606 chr3-455 chr3 145645385 145645541 + 30.5 NA Intergenic Intergenic -50614 NM_026993 69219 Mm.234247 NM_026993 ENSMUSG00000028194 Ddah1 2410006N07Rik|2510015N06Rik|AI987801|AW050362 dimethylarginine dimethylaminohydrolase 1 0.025641 0.509554 1.283864 chr17-313 chr17 23274942 23275098 + 30.5 NA Intergenic tRNA-Lys-AAG|tRNA|tRNA 16828 NM_001033496 449521 Mm.268582 NM_001033496 ENSMUSG00000071256 Zfp213 BC038178|D17Ertd197e zinc finger protein 213 0.051282 0.496815 -6.608192 chr6-394 chr6 90526146 90526302 + 30.5 NA intron (NM_027406, intron 4 of 22) intron (NM_027406, intron 4 of 22) 9873 NM_027406 107747 Mm.30035 NM_027406 ENSMUSG00000030088 Aldh1l1 1810048F20Rik|Fthfd|Neut2 aldehyde dehydrogenase 1 family, member L1 0.006410 0.369427 -3.111908 chr3-362 chr3 24506109 24506265 + 30.5 NA Intergenic Intergenic 1838193 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.019231 0.414013 -2.290149 chr11-493 chr11 22864511 22864667 + 30.5 NA intron (NM_144514, intron 1 of 2) intron (NM_144514, intron 1 of 2) -7439 NM_011663 22183 Mm.29542 NM_011663 ENSMUSG00000044068 Zrsr1 D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 0.006410 0.464968 -0.701022 chr17-371 chr17 63292987 63293143 + 30.5 NA Intergenic Intergenic -107023 NM_015794 50758 Mm.136366 XM_001478436 ENSMUSG00000023965 Fbxl17 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 F-box and leucine-rich repeat protein 17 0.012821 0.452229 -5.880259 chr11-624 chr11 118328084 118328240 + 30.5 NA intron (NM_001024931, intron 5 of 14) intron (NM_001024931, intron 5 of 14) 35113 NM_172573 217364 Mm.473963 NM_172573 ENSMUSG00000033857 Engase C130099A03|D230014K01Rik endo-beta-N-acetylglucosaminidase 0.019231 0.694268 -3.318273 chr8-329 chr8 13099029 13099185 + 30.5 NA intron (NM_178708, intron 2 of 13) intron (NM_178708, intron 2 of 13) 6213 NM_178708 234069 Mm.103427 NM_178708 ENSMUSG00000038542 Pcid2 A730042J05Rik PCI domain containing 2 0.019231 0.464968 5.496274 chr2-599 chr2 144886643 144886799 + 30.5 NA Intergenic Intergenic -47330 NM_053195 94249 Mm.217171 NM_053195 ENSMUSG00000063873 Slc24a3 NCKX3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 0.006410 0.452229 0.189622 chrX-71 chrX 129319606 129319762 + 30.5 NA intron (NM_013757, intron 1 of 16) intron (NM_013757, intron 1 of 16) 8449 NM_013757 27359 Mm.38674 NM_013757 ENSMUSG00000031255 Sytl4 Gph|Slp4 synaptotagmin-like 4 0.000000 0.375796 -2.873761 chr16-276 chr16 85637323 85637479 + 30.5 NA Intergenic Intergenic 54910 NM_009621 11504 Mm.1421 NM_009621 ENSMUSG00000022893 Adamts1 ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 0.025641 0.547771 -0.688280 chr9-473 chr9 61995598 61995754 + 30.5 NA Intergenic Intergenic 84509 NM_025721 66712 Mm.263615 NM_025721 ENSMUSG00000046846 Spesp1 4921508E09Rik|AI428149 sperm equatorial segment protein 1 0.012821 0.515924 -1.868542 chr9-528 chr9 118361804 118361960 + 30.5 NA intron (NM_018748, intron 1 of 23) intron (NM_018748, intron 1 of 23) 6867 NM_018748 54214 Mm.10409 NM_018748 ENSMUSG00000038708 Golga4 AI225887|AU019508|Olp-1 golgi autoantigen, golgin subfamily a, 4 0.006410 0.452229 0.528211 chr4-599 chr4 154127537 154127693 + 30.5 NA intron (NM_001039079, intron 7 of 14) intron (NM_001039079, intron 7 of 14) 33850 NR_033802 67513 Mm.10374 NM_001033134 ENSMUSG00000073684 2610002J02Rik - RIKEN cDNA 2610002J02 gene 0.019231 0.484076 -4.929848 chr1-796 chr1 192562403 192562559 + 30.5 NA intron (NM_178775, intron 6 of 14) intron (NM_178775, intron 6 of 14) 49904 NM_178775 320119 Mm.220912 NM_178775 ENSMUSG00000037581 Rps6kc1 AA682037|B130003F20Rik|C80612|Rpk118 ribosomal protein S6 kinase polypeptide 1 0.012821 0.407643 -5.337280 chr4-539 chr4 117587429 117587585 + 30.5 NA intron (NM_001161774, intron 2 of 11) intron (NM_001161774, intron 2 of 11) 45315 NM_009176 20441 Mm.251002 NM_001161774 ENSMUSG00000028538 St3gal3 ST3N|Siat3|Siat6 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 0.019231 0.535032 -3.335130 chr1-719 chr1 136998332 136998488 + 30.5 NA Intergenic Intergenic -14318 NM_134438 171469 Mm.272290 NM_134438 ENSMUSG00000026424 Gpr37l1 AW047233|CAG-18|D0Kist8 G protein-coupled receptor 37-like 1 0.032051 0.547771 -4.701768 chr5-572 chr5 24121519 24121675 + 30.5 NA Intergenic Intergenic -9530 NM_025891 66993 Mm.436539 NM_025891 ENSMUSG00000028949 Smarcd3 1500001J14Rik|2210409C08Rik|BAF60C SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 0.006410 0.503185 1.790254 chr9-483 chr9 68810112 68810268 + 30.5 NA intron (NM_013646, intron 1 of 10) intron (NM_013646, intron 1 of 10) 245681 NR_033299 320440 NM_177159 9530091C08Rik - RIKEN cDNA 9530091C08 gene 0.019231 0.471338 -1.572935 chr7-388 chr7 139315580 139315736 + 30.5 NA intron (NM_001127363, intron 2 of 15) intron (NM_001127363, intron 2 of 15) 75230 NM_001127363 212111 Mm.28308 NM_001127363 ENSMUSG00000025477 Inpp5a - inositol polyphosphate-5-phosphatase A 0.000000 0.490446 -1.210941 chr10-379 chr10 80781909 80782065 + 30.5 NA promoter-TSS (NM_019757) promoter-TSS (NM_019757) -488 NM_019757 56371 Mm.24202 NM_019757 ENSMUSG00000020235 Fzr1 AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1 fizzy/cell division cycle 20 related 1 (Drosophila) 0.070513 0.598726 0.739791 chr15-246 chr15 37853935 37854091 + 30.5 NA Intergenic Intergenic 51631 NM_199476 382985 Mm.24738 NM_199476 ENSMUSG00000022292 Rrm2b p53R2 ribonucleotide reductase M2 B (TP53 inducible) 0.006410 0.496815 1.639277 chr10-358 chr10 72049920 72050076 + 30.5 NA promoter-TSS (NM_025635) promoter-TSS (NM_025635) -196 NM_025635 52696 Mm.62876 NM_025635 ENSMUSG00000019923 Zwint 2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1 ZW10 interactor 0.038462 0.522293 -4.606389 chr12-509 chr12 112837823 112837979 + 30.5 NA Intergenic Intergenic 33105 NR_036459 319590 Mm.255309 NM_176956 ENSMUSG00000047828 A730018C14Rik - RIKEN cDNA A730018C14 gene 0.032051 0.388535 4.276652 chr1-708 chr1 129488739 129488895 + 30.5 NA intron (NM_028135, intron 2 of 7) intron (NM_028135, intron 2 of 7) 16750 NM_028135 72160 Mm.281287 NM_028135 ENSMUSG00000026347 Tmem163 2610024A01Rik|SV31 transmembrane protein 163 0.019231 0.541401 -5.120075 chr7-396 chr7 143594580 143594736 + 30.5 NA promoter-TSS (NM_175534) promoter-TSS (NM_175534) -768 NM_175534 244238 Mm.183561 NM_175534 ENSMUSG00000048965 Mrgpre C130069N09Rik|Ebrt3|MrgE MAS-related GPR, member E 0.019231 0.598726 -5.366155 chr15-268 chr15 72595329 72595485 + 30.5 NA intron (NM_029640, intron 16 of 21) intron (NM_029640, intron 16 of 21) 42173 NR_002864 353342 Mm.440245 NR_002864 Peg13 - paternally expressed 13 0.006410 0.414013 -6.082319 chr5-601 chr5 65601436 65601592 + 30.5 NA intron (NM_011258, intron 1 of 24) intron (NM_011258, intron 1 of 24) 13260 NM_011258 19687 Mm.148877 NM_011258 ENSMUSG00000029191 Rfc1 140kDa|Alp145|MGC96526|RFC140|Recc1 replication factor C (activator 1) 1 0.038462 0.509554 1.071463 chr6-406 chr6 95709070 95709226 + 30.5 NA Intergenic Intergenic -24848 NM_011507 20917 Mm.426727 NM_011507 ENSMUSG00000061838 Suclg2 AF171077|AW556404|D6Wsu120e|MGC91183 succinate-Coenzyme A ligase, GDP-forming, beta subunit 0.000000 0.407643 2.485509 chr13-354 chr13 114483101 114483257 + 30.5 NA Intergenic Intergenic 152643 NM_023612 71690 Mm.38929 XM_906879 ENSMUSG00000042379 Esm1 0610042H23Rik|AV004503|ESM-1 endothelial cell-specific molecule 1 0.000000 0.464968 -7.625073 chr5-582 chr5 35312303 35312459 + 30.5 NA intron (NM_173402, intron 3 of 16) intron (NM_173402, intron 3 of 16) -3557 NM_001163512 71729 Mm.196208 NM_001163512 ENSMUSG00000029101 Rgs12 1200016K18Rik|4632412M04Rik|AI481290|E130309H11 regulator of G-protein signaling 12 0.006410 0.490446 -4.547506 chr10-415 chr10 98134377 98134533 + 30.5 NA Intergenic Intergenic -210384 NM_026482 67972 Mm.471912 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 ATPase, Ca++ transporting, plasma membrane 1 0.012821 0.464968 -5.673225 chr2-568 chr2 103107668 103107824 + 30.5 NA Intergenic Intergenic -3711 NM_007914 13661 Mm.10724 NM_007914 ENSMUSG00000012350 Ehf 9030625L19Rik|AU019492 ets homologous factor 0.025641 0.579618 -0.891054 chr18-217 chr18 9320818 9320974 + 30.5 NA intron (NM_026484, intron 8 of 9) intron (NM_026484, intron 8 of 9) -38089 NM_153086 225152 Mm.119273 NM_153086 ENSMUSG00000036855 Gjd4 9430022F06Rik|Cx39 gap junction protein, delta 4 0.000000 0.407643 -2.541862 chr2-494 chr2 33908214 33908370 + 30.5 NA Intergenic MTEb|LTR|MaLR -198337 NM_175184 72543 Mm.254914 NM_175184 ENSMUSG00000038740 Fam125b 2610200O14Rik|2610528K11Rik|AI414895 family with sequence similarity 125, member B 0.006410 0.484076 -2.496032 chr1-737 chr1 159441810 159441966 + 30.5 NA Intergenic Intergenic 79042 NM_001159986 89867 Mm.87114 NM_001159986 ENSMUSG00000026589 Sec16b Lztr2|Rgpr|Rgpr-p117 SEC16 homolog B (S. cerevisiae) 0.000000 0.407643 -1.406640 chr3-393 chr3 84126214 84126370 + 30.5 NA promoter-TSS (NM_172681) promoter-TSS (NM_172681) -204 NM_172681 229473 Mm.28838 NM_172681 ENSMUSG00000033767 D930015E06Rik Kiaa0922|mKIAA0922 RIKEN cDNA D930015E06 gene 0.115385 0.700637 -3.559099 chr5-728 chr5 146677516 146677672 + 30.5 NA Intergenic Intergenic -11645 NM_145155 245880 Mm.472750 NM_145155 ENSMUSG00000029636 Wasf3 Scar3|Wave3 WAS protein family, member 3 0.032051 0.433121 4.726094 chr17-290 chr17 5849720 5849876 + 30.5 NA intron (NM_025664, intron 4 of 17) intron (NM_025664, intron 4 of 17) -47963 NM_001113353 20975 Mm.236068 NM_001113351 ENSMUSG00000023805 Synj2 AI481647|SJ2|mKIAA0348 synaptojanin 2 0.025641 0.585987 -6.010658 chr2-644 chr2 179349976 179350132 + 30.5 NA Intergenic Intergenic -21831 NM_009867 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-cadherin|Rcad cadherin 4 0.012821 0.484076 -1.533436 chr10-377 chr10 80578281 80578437 + 30.5 NA Intergenic Intergenic -1400 NM_007907 13629 Mm.393589 NM_007907 ENSMUSG00000034994 Eef2 Ef-2|MGC98463 eukaryotic translation elongation factor 2 0.044872 0.560510 -1.845577 chr3-367 chr3 28870272 28870428 + 30.5 NA Intergenic Intergenic -18625 NM_031197 20526 Mm.18443 NM_031197 ENSMUSG00000027690 Slc2a2 AI266973|Glut-2|Glut2 solute carrier family 2 (facilitated glucose transporter), member 2 0.006410 0.420382 0.972706 chr18-268 chr18 90716633 90716789 + 30.5 NA Intergenic Intergenic 72360 NM_198295 67988 Mm.268041 NM_198295 ENSMUSG00000024614 Tmx3 6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830 thioredoxin-related transmembrane protein 3 0.000000 0.407643 -3.650320 chr7-323 chr7 49987905 49988061 + 30.5 NA intron (NM_001037906, intron 3 of 19) intron (NM_001037906, intron 3 of 19) 144613 NM_001037906 338352 Mm.383528 NM_001037906 ENSMUSG00000055409 Nell1 B230343H07Rik|l7R6 NEL-like 1 (chicken) 0.000000 0.458599 -3.347149 chr11-568 chr11 94795109 94795265 + 30.5 NA Intergenic CpG -2770 NM_009161 20391 Mm.18709 NM_001136080 ENSMUSG00000001508 Sgca 50DAG|59kDa|Asg|adhalin sarcoglycan, alpha (dystrophin-associated glycoprotein) 0.051282 0.624204 1.574793 chr1-687 chr1 93705738 93705894 + 30.5 NA Intergenic Intergenic 73934 NM_007855 13345 Mm.9474 NM_007855 ENSMUSG00000007805 Twist2 Dermo1|bHLHa39 twist homolog 2 (Drosophila) 0.012821 0.579618 -4.653351 chr2-578 chr2 119042680 119042836 + 30.5 NA promoter-TSS (NM_026929) promoter-TSS (NM_026929) 76 NM_026929 69065 Mm.35083 NM_026929 ENSMUSG00000027313 Chac1 1810008K03Rik ChaC, cation transport regulator-like 1 (E. coli) 0.102564 0.694268 -8.234238 chrX-60 chrX 69637265 69637421 + 30.5 NA Intergenic Intergenic -26479 NM_009566 22754 Mm.5060 NM_009566 ENSMUSG00000031374 Zfp92 - zinc finger protein 92 0.025641 0.420382 2.641073 chr5-702 chr5 137732199 137732355 + 30.5 NA promoter-TSS (NM_028753) promoter-TSS (NM_028753) -60 NM_028753 74097 Mm.290242 NM_028753 ENSMUSG00000029715 Pop7 0610037N12Rik|AI852017|Rpp20 processing of precursor 7, ribonuclease P family, (S. cerevisiae) 0.115385 0.617834 -3.996564 chr15-271 chr15 75431258 75431414 + 30.5 NA Intergenic MLT1B|LTR|MaLR 7424 NM_026730 68453 Mm.46367 NM_026730 ENSMUSG00000022579 Gpihbp1 1110002J19Rik|GPI-HBP1 GPI-anchored HDL-binding protein 1 0.012821 0.452229 -6.986087 chr13-284 chr13 34306877 34307033 + 30.5 NA intron (NM_001033167, intron 2 of 10) intron (NM_001033167, intron 2 of 10) 45692 NM_001033167 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik solute carrier family 22, member 23 0.006410 0.420382 -5.598668 chr19-184 chr19 58920899 58921055 + 30.5 NA Intergenic RMER19A|LTR|ERVK -6743 NM_175199 73442 Mm.39739 NM_175199 ENSMUSG00000025092 Hspa12a 1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|mKIAA0417 heat shock protein 12A 0.006410 0.426752 7.200219 chr10-424 chr10 119093938 119094094 + 30.5 NA intron (NM_133442, intron 1 of 21) intron (NM_133442, intron 1 of 21) -128555 NM_130891 74053 Mm.196692 NM_028736 ENSMUSG00000034813 Grip1 4931400F03Rik|KIAA4223|eb|mKIAA4223 glutamate receptor interacting protein 1 0.012821 0.414013 -4.309810 chr18-267 chr18 89400112 89400268 + 30.5 NA intron (NM_178687, intron 5 of 6) intron (NM_178687, intron 5 of 6) 68571 NM_001039149 225825 Mm.139293 NM_001039149 ENSMUSG00000034028 Cd226 BC051526|DNAM-1|DNAM1|Pta1|TLiSA1 CD226 antigen 0.006410 0.331210 2.298276 chr10-327 chr10 19504096 19504252 + 30.5 NA Intergenic Intergenic 36701 NM_029529 76157 Mm.477281 NM_029529 ENSMUSG00000050473 Slc35d3 6230421J19Rik|Frcl1 solute carrier family 35, member D3 0.006410 0.414013 -0.395048 chr1-748 chr1 161862701 161862857 + 30.5 NA Intergenic Intergenic -18277 NR_028111 67647 Mm.171518 NM_001162896 4930523C07Rik - RIKEN cDNA 4930523C07 gene 0.012821 0.433121 -6.478491 chr2-519 chr2 56808364 56808520 + 30.5 NA Intergenic Intergenic 121982 NM_013613 18227 Mm.3507 NM_001139509 ENSMUSG00000026826 Nr4a2 HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR nuclear receptor subfamily 4, group A, member 2 0.012821 0.477707 -4.496294 chr13-305 chr13 55454977 55455133 + 30.5 NA promoter-TSS (NM_011938) promoter-TSS (NM_011938) 100 NM_001112711 26385 Mm.10193 NM_001038018 ENSMUSG00000074886 Grk6 Gprk6 G protein-coupled receptor kinase 6 0.192308 0.834395 -7.318149 chr11-483 chr11 8487322 8487478 + 30.5 NA intron (NM_001083587, intron 3 of 30) intron (NM_001083587, intron 3 of 30) 77138 NM_001083587 319939 Mm.337820 NM_001083587 ENSMUSG00000020422 Tns3 BC023928|F830010I22Rik|TEM6|Tens1 tensin 3 0.000000 0.458599 -6.947871 chr2-554 chr2 84837899 84838055 + 30.5 NA promoter-TSS (NM_001136081) promoter-TSS (NM_001136081) -62 NM_182990 20833 Mm.219793 NM_001136081 ENSMUSG00000027067 Ssrp1 C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160 structure specific recognition protein 1 0.108974 0.636943 -3.179566 chr10-426 chr10 122556744 122556900 + 30.5 NA intron (NM_027604, intron 6 of 21) intron (NM_027604, intron 6 of 21) 43161 NM_027604 14479 Mm.470032 NM_027604 ENSMUSG00000020124 Usp15 4921514G19Rik|AI327321|E430033I05Rik|Gcap18|mKIAA0529 ubiquitin specific peptidase 15 0.000000 0.337580 3.092385 chr11-543 chr11 78208979 78209135 + 30.5 NA Intergenic Intergenic -1622 NR_003282 790911 Mm.457257 NR_003282 Gm11194 OTTMUSG00000000132 predicted gene 11194 0.019231 0.554140 2.746919 chr8-398 chr8 123999393 123999549 + 30.5 NA Intergenic Intergenic -2676 NM_013519 14234 Mm.14092 NM_013519 ENSMUSG00000046714 Foxc2 Fkh14|Hfhbf3|MFH-1|Mfh1 forkhead box C2 0.057692 0.592357 -7.437212 chr3-418 chr3 108425200 108425356 + 30.5 NA intron (NM_019972, intron 1 of 19) intron (NM_019972, intron 1 of 19) 13091 NM_019972 20661 Mm.157119 NM_019972 ENSMUSG00000068747 Sort1 2900053A11Rik|AI852375|Ntr3|Ntsr3 sortilin 1 0.006410 0.522293 -3.646476 chr2-592 chr2 132542590 132542746 + 30.5 NA intron (NM_001024385, intron 2 of 6) intron (NM_001024385, intron 2 of 6) 3494 NM_025646 66586 Mm.357342 NM_001024385 ENSMUSG00000027357 Crls1 0610009I22Rik|4930557M15Rik|5730490M08Rik cardiolipin synthase 1 0.019231 0.452229 -1.466927 chr9-431 chr9 37122212 37122368 + 30.5 NA intron (NM_175189, intron 1 of 6) intron (NM_175189, intron 1 of 6) 5014 NM_175189 72927 Mm.266133 NM_175189 ENSMUSG00000046240 Hepacam 2900042E01Rik|Hepn1 hepatocyte cell adhesion molecule 0.006410 0.382166 -4.559042 chr5-683 chr5 129074850 129075006 + 30.5 NA TTS (NM_001081388) TTS (NM_001081388) 23975 NM_021311 57749 Mm.272720 NM_021311 ENSMUSG00000029423 Piwil1 MGC150073|MIWI piwi-like homolog 1 (Drosophila) 0.038462 0.573248 -1.328220 chr6-418 chr6 102521441 102521597 + 30.5 NA Intergenic Intergenic -90754 NM_008779 18488 Mm.435479 NM_008779 ENSMUSG00000030075 Cntn3 Pang contactin 3 0.006410 0.547771 -1.776831 chr3-447 chr3 142063045 142063201 + 30.5 NA Intergenic Intergenic -143485 NM_007560 12167 Mm.39089 NM_007560 ENSMUSG00000052430 Bmpr1b AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-IB|CFK-43a bone morphogenetic protein receptor, type 1B 0.006410 0.477707 2.171217 chr5-709 chr5 139403704 139403860 + 30.5 NA promoter-TSS (NM_001081265) promoter-TSS (NM_001081265) -82 NM_001081265 433956 Mm.5547 XM_001479208 ENSMUSG00000025857 Heatr2 BC053401|C76907|MGC60818 HEAT repeat containing 2 0.070513 0.656051 -7.142542 chr18-249 chr18 51208139 51208295 + 30.5 NA Intergenic Intergenic -34865 NM_001081224 71373 Mm.477237 NM_001081224 ENSMUSG00000073565 Prr16 5430406M13Rik|AI607429 proline rich 16 0.000000 0.382166 -0.699527 chr15-228 chr15 26618136 26618292 + 30.5 NA intron (NM_176959, intron 2 of 3) intron (NM_176959, intron 2 of 3) 222075 NM_176959 448987 Mm.253378 NM_176959 ENSMUSG00000043556 Fbxl7 AL023057|D230018M15Rik|FBL7|Fbl6|MGC102204 F-box and leucine-rich repeat protein 7 0.012821 0.471338 -3.267233 chr11-597 chr11 105464621 105464777 + 30.5 NA intron (NM_181071, intron 2 of 25) intron (NM_181071, intron 2 of 25) 58624 NM_181071 77097 Mm.22501 NM_181071 ENSMUSG00000053580 Tanc2 3526402J09Rik|5730590C14Rik tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.012821 0.496815 -2.744268 chr5-604 chr5 65906643 65906799 + 30.5 NA exon (NM_001081321, exon 25 of 32) exon (NM_001081321, exon 25 of 32) 70270 NM_001081321 71521 Mm.278974 NM_001081321 ENSMUSG00000029202 Pds5a 9030416H16Rik|E230024D05Rik|mKIAA0648 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 0.025641 0.503185 1.223576 chr5-722 chr5 141454850 141455006 + 30.5 NA Intergenic Intergenic -39079 NM_177879 330222 Mm.406697 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik sidekick homolog 1 (chicken) 0.019231 0.420382 -5.402267 chr9-504 chr9 96565127 96565283 + 30.5 NA Intergenic Intergenic -3022 NR_015511 319859 Mm.259909 NM_177020 E030011O05Rik - RIKEN cDNA E030011O05 gene 0.038462 0.464968 -4.204983 chr5-632 chr5 93674308 93674464 + 30.5 NA Intergenic Intergenic -3868 NM_175096 52331 Mm.21965 NM_175096 ENSMUSG00000047963 Stbd1 D530019K15Rik|D5Ertd593e|MGC148231|MGC148232 starch binding domain 1 0.038462 0.528662 -6.074814 chr14-165 chr14 47848642 47848798 + 30.5 NA Intergenic Intergenic 47897 NR_033783 66770 Mm.136954 NR_033783 4933429O19Rik 1700031B11Rik RIKEN cDNA 4933429O19 gene 0.025641 0.401274 -9.983829 chr9-489 chr9 75180577 75180733 + 30.5 NA intron (NM_027418, intron 3 of 5) intron (NM_027418, intron 3 of 5) 14613 NM_027418 50772 Mm.18856 NM_015806 ENSMUSG00000042688 Mapk6 2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6 mitogen-activated protein kinase 6 0.019231 0.509554 -4.359240 chr4-483 chr4 69928398 69928554 + 30.5 NA intron (NM_172694, intron 4 of 5) intron (NM_172694, intron 4 of 5) -31748 NM_145990 214444 Mm.379344 NM_145990 ENSMUSG00000039298 Cdk5rap2 2900018K03Rik|MGC38528|an|mKIAA1633 CDK5 regulatory subunit associated protein 2 0.000000 0.388535 0.656137 chr15-251 chr15 42868134 42868290 + 30.5 NA intron (NM_172815, intron 5 of 5) intron (NM_172815, intron 5 of 5) 132680 NM_172815 239405 Mm.193274 NM_172815 ENSMUSG00000051920 Rspo2 2610028F08Rik|AA673245|D430027K22|ftls R-spondin 2 homolog (Xenopus laevis) 0.012821 0.312102 1.091347 chr12-409 chr12 30398921 30399077 + 30.5 NA intron (NM_001093778, intron 9 of 24) intron (NM_001093778, intron 9 of 24) -125088 NM_181395 69675 Mm.251774 NM_181395 ENSMUSG00000020674 Pxdn 2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230 peroxidasin homolog (Drosophila) 0.000000 0.407643 -0.921099 chr17-367 chr17 55903026 55903182 + 30.5 NA TTS (NM_174989) TTS (NM_174989) 7372 NM_174989 106759 Mm.203952 NM_174989 ENSMUSG00000047123 Ticam1 AW046014|AW547018|TICAM-1|TRIF toll-like receptor adaptor molecule 1 0.032051 0.477707 -2.562254 chr2-571 chr2 113705523 113705679 + 30.5 NA promoter-TSS (NM_010290) promoter-TSS (NM_010290) -541 NM_010290 14617 Mm.389394 NM_010290 ENSMUSG00000068615 Gjd2 Gja9|connexin36|cx36 gap junction protein, delta 2 0.038462 0.554140 -0.206832 chr4-501 chr4 91232986 91233142 + 30.5 NA Intergenic Intergenic -341062 NM_207685 15569 Mm.318042 NM_001177883 ENSMUSG00000008489 Elavl2 Hub|mel-N1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 0.000000 0.299363 -2.450375 chr10-353 chr10 63518715 63518871 + 30.5 NA intron (NM_001164376, intron 7 of 17) intron (NM_001164376, intron 7 of 17) -33181 NM_178678 216028 Mm.431318 NM_178678 ENSMUSG00000042846 Lrrtm3 9630044H04Rik leucine rich repeat transmembrane neuronal 3 0.000000 0.464968 -3.505995 chr14-150 chr14 19080022 19080178 + 30.5 NA Intergenic Intergenic -3141 NM_026341 67725 Mm.317636 NM_026341 ENSMUSG00000021809 Nudt13 4933433B15Rik nudix (nucleoside diphosphate linked moiety X)-type motif 13 0.019231 0.515924 -5.880018 chr7-301 chr7 11918283 11918439 + 30.5 NA Intergenic Intergenic -5969 NM_011588 21849 Mm.398345 NM_011588 ENSMUSG00000005566 Trim28 AA408787|KAP-1|KRIP-1|MGC102100|Tif1b|Tif1beta tripartite motif-containing 28 0.006410 0.464968 -4.169675 chr4-457 chr4 11050189 11050345 + 30.5 NA Intergenic Intergenic -10976 NR_030455 735261 NR_030455 Mir684-2 Mirn684-2 microRNA 684-2 0.076923 0.566879 -4.197162 chr6-332 chr6 13002937 13003093 + 30.5 NA Intergenic Intergenic -16743 NM_027992 71900 Mm.27742 NM_027992 ENSMUSG00000029571 Tmem106b 2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344 transmembrane protein 106B 0.012821 0.464968 -3.208441 chr4-598 chr4 154093904 154094060 + 30.5 NA 5' UTR (NR_033802, exon 1 of 3) 5' UTR (NR_033802, exon 1 of 3) 217 NR_033802 67513 Mm.10374 NM_001033134 ENSMUSG00000073684 2610002J02Rik - RIKEN cDNA 2610002J02 gene 0.128205 0.694268 -3.789027 chr2-549 chr2 78831824 78831980 + 30.5 NA Intergenic Intergenic 162017 NM_009454 22193 Mm.393087 NM_009454 ENSMUSG00000027011 Ube2e3 Ubce4|ubcM2 ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast) 0.000000 0.464968 -3.649423 chr8-343 chr8 26739863 26740019 + 30.5 NA Intergenic Zaphod|DNA|Tip100 -72947 NM_177089 320165 Mm.308452 NM_177089 ENSMUSG00000065954 Tacc1 4833447E04Rik|AA960202|B230378H13Rik transforming, acidic coiled-coil containing protein 1 0.025641 0.515924 -1.723630 chr15-291 chr15 91290922 91291078 + 30.5 NA intron (NM_001033633, intron 3 of 9) intron (NM_001033633, intron 3 of 9) 110028 NM_001033633 239606 Mm.360596 NM_001033633 ENSMUSG00000036298 Slc2a13 6530403A04|A630029G22Rik|AI505012|Gm308 solute carrier family 2 (facilitated glucose transporter), member 13 0.032051 0.541401 -0.482493 chr4-515 chr4 102505081 102505237 + 30.5 NA 3' UTR (NR_028391, exon 4 of 4) 3' UTR (NR_028391, exon 4 of 4) 4738 NR_028391 100473 Mm.393171 NR_028391 BB031773 - expressed sequence BB031773 0.025641 0.458599 -1.506622 chr9-503 chr9 96267758 96267914 + 30.5 NA Intergenic Intergenic 20111 NM_011279 19823 Mm.28235 NM_011279 ENSMUSG00000051234 Rnf7 Rbx2|SAG ring finger protein 7 0.012821 0.464968 -5.790770 chr8-323 chr8 3284801 3284957 + 30.5 NA Intergenic Intergenic -5262 NM_010568 16337 Mm.268003 NM_001033381 ENSMUSG00000005534 Insr 4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B insulin receptor 0.012821 0.471338 4.042667 chr12-466 chr12 87836410 87836566 + 30.5 NA promoter-TSS (NM_173735) promoter-TSS (NM_173735) 43 NM_173735 217732 Mm.22337 NM_173735 ENSMUSG00000034157 2310044G17Rik AI842544|AI853744|Kiaa1737|mKIAA1737 RIKEN cDNA 2310044G17 gene 0.115385 0.687898 -6.882717 chr3-402 chr3 96647850 96648006 + 30.5 NA TTS (NM_023719) TTS (NM_023719) 4567 NM_023719 56338 Mm.475126 NM_001009935 ENSMUSG00000038393 Txnip 1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1 thioredoxin interacting protein 0.006410 0.541401 -2.603060 chr15-293 chr15 92828324 92828480 + 30.5 NA Intergenic Intergenic 274862 NM_001033275 223827 Mm.22819 NM_001033275 ENSMUSG00000036197 Gxylt1 Glt8d3|Gm1228|Gm87 glucoside xylosyltransferase 1 0.032051 0.477707 -2.194094 chr4-550 chr4 126257311 126257467 + 30.5 NA intron (NM_001035526, intron 1 of 23) intron (NM_001035526, intron 1 of 23) 1316 NM_001035526 100317 Mm.206206 NM_001035525 ENSMUSG00000028830 AU040320 A730047D20Rik expressed sequence AU040320 0.025641 0.433121 -3.734109 chr16-254 chr16 33257191 33257347 + 30.5 NA Intergenic Intergenic -43252 NM_011749 22661 Mm.392667 NM_011749 ENSMUSG00000022811 Zfp148 2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148 zinc finger protein 148 0.032051 0.522293 -4.423164 chr12-445 chr12 79144923 79145079 + 30.5 NA promoter-TSS (NM_172952) promoter-TSS (NM_172952) -493 NM_172952 268566 Mm.453131 NM_145965 ENSMUSG00000047454 Gphn 5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|MGC150066|MGC38765|geph gephyrin 0.147436 0.726115 -7.840951 chr11-514 chr11 57386421 57386577 + 30.5 NA Intergenic Intergenic 51640 NM_145426 216760 Mm.30501 NM_145426 ENSMUSG00000020522 Mfap3 2610509F16Rik|2700079M14Rik|AW536327 microfibrillar-associated protein 3 0.012821 0.484076 -4.108047 chr1-637 chr1 63915283 63915439 + 30.5 NA Intergenic Intergenic 16359 NR_027824 433315 Mm.342696 NM_001013800 Gm13749 OTTMUSG00000013918 predicted gene 13749 0.012821 0.420382 -2.910862 chr1-803 chr1 196062145 196062301 + 30.5 NA Intergenic Intergenic -258329 NM_008882 18845 Mm.2251 NM_008882 ENSMUSG00000026640 Plxna2 2810428A13Rik|AA589422|AW457381|OCT|Plxn2|mKIAA0463 plexin A2 0.006410 0.477707 6.628937 chr12-454 chr12 84775695 84775851 + 30.5 NA Intergenic Intergenic -43682 NM_010949 18222 Mm.4390 NM_001136075 ENSMUSG00000021224 Numb m-numb|mnb numb gene homolog (Drosophila) 0.000000 0.554140 1.389711 chr14-155 chr14 23627715 23627871 + 30.5 NA Intergenic Intergenic 304648 NM_011297 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 MGC107549 ribosomal protein S24 0.044872 0.560510 -3.849805 chr10-392 chr10 85085870 85086026 + 30.5 NA intron (NM_001017525, intron 14 of 14) intron (NM_001017525, intron 14 of 14) 57739 NM_001017525 74007 Mm.36544 NM_001017525 ENSMUSG00000020042 Btbd11 6330404E16Rik BTB (POZ) domain containing 11 0.019231 0.541401 -0.701022 chr11-478 chr11 3707995 3708151 + 30.5 NA intron (NM_152818, intron 2 of 13) intron (NM_152818, intron 2 of 13) 55833 NM_152818 74309 Mm.61022 NM_152818 ENSMUSG00000020435 Osbp2 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 oxysterol binding protein 2 0.006410 0.522293 -5.523005 chr7-352 chr7 101807812 101807968 + 30.5 NA promoter-TSS (NM_001162973) promoter-TSS (NM_001162973) -212 NM_001162973 69358 Mm.214841 XM_890234 ENSMUSG00000064307 Lrrc51 1700008D07Rik|Lrtomt leucine rich repeat containing 51 0.076923 0.585987 1.073378 chr4-495 chr4 83559602 83559758 + 30.5 NA Intergenic Intergenic 562905 NM_001081012 320226 Mm.180032 NM_001081012 ENSMUSG00000052407 4930473A06Rik 4930418J05Rik|A330015D16Rik RIKEN cDNA 4930473A06 gene 0.032051 0.509554 -6.950953 chr18-236 chr18 38142141 38142297 + 30.5 NA Intergenic Intergenic -18671 NM_139206 106952 Mm.247642 NM_139206 ENSMUSG00000024451 Arap3 AI851258|Centd3|Drag1|E030006K04Rik|KIAA4097|mKIAA4097 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 0.006410 0.535032 -1.658055 chr5-639 chr5 99593464 99593620 + 30.5 NA intron (NR_030692, intron 3 of 3) intron (NR_030692, intron 3 of 3) -100313 NM_145839 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.012821 0.407643 0.486126 chr6-339 chr6 34425571 34425727 + 30.5 NA intron (NM_007563, intron 2 of 2) intron (NM_007563, intron 2 of 2) 19136 NM_007563 12183 Mm.282863 NM_007563 ENSMUSG00000038871 Bpgm AI323730|AL022789|C86192 2,3-bisphosphoglycerate mutase 0.012821 0.477707 -4.285807 chr8-386 chr8 114621352 114621508 + 30.5 NA intron (NM_009954, intron 1 of 6) intron (NM_009954, intron 1 of 6) 9052 NM_009954 12927 Mm.3758 NM_009954 ENSMUSG00000031955 Bcar1 AI385681|Cas|Crkas breast cancer anti-estrogen resistance 1 0.006410 0.496815 1.200236 chr13-270 chr13 23569739 23569895 + 30.5 NA promoter-TSS (NM_178205) promoter-TSS (NM_178205) 13 NM_178205 319151 Mm.261658 NM_178205 ENSMUSG00000069273 Hist1h3e H3-f|Hist1h3b|Hist1h3c|Hist1h3d|Hist1h3f|Hist2h3b|Hist2h3c1|Hist2h3c2 histone cluster 1, H3e 0.089744 0.649682 -6.029032 chr6-411 chr6 99138779 99138935 + 30.5 NA Intergenic Intergenic -10376 NM_053202 108655 Mm.461753 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 0.025641 0.477707 -3.579683 chr8-365 chr8 73290092 73290248 + 30.5 NA Intergenic Intergenic -7908 NM_001122829 19704 Mm.390048 NM_001122829 ENSMUSG00000058301 Upf1 B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp UPF1 regulator of nonsense transcripts homolog (yeast) 0.012821 0.547771 0.551551 chr16-228 chr16 4599332 4599488 + 30.5 NA exon (NM_023646, exon 1 of 12) exon (NM_023646, exon 1 of 12) 113 NM_001135112 83945 Mm.248337 NM_001135112 ENSMUSG00000004069 Dnaja3 1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l DnaJ (Hsp40) homolog, subfamily A, member 3 0.064103 0.700637 -4.227351 chr7-381 chr7 129649578 129649734 + 30.5 NA Intergenic Intergenic 266646 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|MGC47139|mKIAA1351 WD repeat domain 11 0.006410 0.445860 -3.394600 chr9-460 chr9 58614652 58614808 + 30.5 NA Intergenic Intergenic -6918 NM_001081192 330953 Mm.151967 NM_001081192 ENSMUSG00000032338 Hcn4 Bcng3|Hcn3 hyperpolarization-activated, cyclic nucleotide-gated K+ 4 0.025641 0.579618 -0.398508 chr1-641 chr1 66681541 66681697 + 30.5 NA intron (NM_001122738, intron 6 of 14) intron (NM_001122738, intron 6 of 14) 47519 NM_025683 66646 Mm.240912 NM_025683 ENSMUSG00000026005 Rpe 2810429B02Rik|5730518J08Rik ribulose-5-phosphate-3-epimerase 0.000000 0.363057 0.076850 chr2-588 chr2 130720945 130721101 + 30.5 NA 3' UTR (NM_009730, exon 29 of 29) 3' UTR (NM_009730, exon 29 of 29) 13100 NM_020014 14588 Mm.198399 NM_001136063 ENSMUSG00000027316 Gfra4 AW060733|G630015H18Rik glial cell line derived neurotrophic factor family receptor alpha 4 0.000000 0.420382 -1.478054 chr19-132 chr19 3396213 3396369 + 30.5 NA intron (NM_001039657, intron 4 of 8) intron (NM_001039657, intron 4 of 8) 7423 NM_001039657 17771 Mm.209941 NM_001039657 ENSMUSG00000024905 Mtl5 tesmin metallothionein-like 5, testis-specific (tesmin) 0.000000 0.452229 -2.944351 chr2-528 chr2 65374646 65374802 + 30.5 NA Intergenic Intergenic -6393 NM_018732 20269 Mm.330256 NM_018732 ENSMUSG00000057182 Scn3a Gm1000|Nav1.3 sodium channel, voltage-gated, type III, alpha 0.000000 0.490446 -3.262073 chr2-561 chr2 92759674 92759830 + 30.5 NA Intergenic Intergenic 43813 NM_030725 80976 Mm.33490 NM_030725 ENSMUSG00000027220 Syt13 5730409J20Rik|AI549909|mKIAA1427 synaptotagmin XIII 0.019231 0.471338 -4.275451 chr19-160 chr19 28298889 28299045 + 30.5 NA Intergenic L4|LINE|RTE -221804 NM_011265 19726 Mm.313321 NM_001166414 ENSMUSG00000040929 Rfx3 C230093O12Rik|MRFX3 regulatory factor X, 3 (influences HLA class II expression) 0.006410 0.420382 1.979728 chr5-713 chr5 140028100 140028256 + 30.5 NA promoter-TSS (NM_026748) promoter-TSS (NM_026748) -26 NM_026748 68510 Mm.292942 NM_026748 ENSMUSG00000029547 Ints1 1110015K06Rik|KIAA1440 integrator complex subunit 1 0.064103 0.566879 -2.335121 chr5-664 chr5 118326607 118326763 + 30.5 NA 3' UTR (NM_172721, exon 11 of 11) 3' UTR (NM_172721, exon 11 of 11) 37832 NM_021344 57816 Mm.273285 NM_021344 ENSMUSG00000029359 Tesc 1010001A17Rik|2410011K10Rik|MGC117906|TE-1 tescalcin 0.012821 0.554140 -5.212957 chr4-504 chr4 97748502 97748658 + 30.5 NA Intergenic Intergenic 126703 NM_053157 94043 Mm.331719 NM_053157 ENSMUSG00000028563 Tm2d1 2310026L18Rik|AA990549|Bbp TM2 domain containing 1 0.019231 0.471338 -5.604037 chr15-232 chr15 30832210 30832366 + 30.5 NA intron (NM_008729, intron 14 of 22) intron (NM_008729, intron 14 of 22) -336685 NM_146057 223453 Mm.222867 NM_146057 ENSMUSG00000039168 Dap 4921531N22Rik|AI789753|AU040360|MGC19154|MGC6998 death-associated protein 0.006410 0.484076 -2.333190 chr6-389 chr6 87859644 87859800 + 30.5 NA exon (NM_017477, exon 10 of 24) exon (NM_017477, exon 10 of 24) 6110 NM_201244 54161 Mm.258785 NM_017477 ENSMUSG00000030058 Copg AU019265|BC056168|Copg1|D6Ertd71e|D6Wsu16e|MGC66965 coatomer protein complex, subunit gamma 0.025641 0.535032 -8.816063 chr5-557 chr5 9239383 9239539 + 30.5 NA Intergenic L1MB1|LINE|L1 -32737 NM_172706 231014 Mm.130063 NM_172706 ENSMUSG00000056004 9330182L06Rik - RIKEN cDNA 9330182L06 gene 0.006410 0.401274 2.225304 chrX-53 chrX 17265618 17265774 + 30.5 NA Intergenic RMER6B|LTR|ERVK -37132 NM_028568 73547 Mm.159027 NM_028568 ENSMUSG00000025043 Dusp21 1700094E07Rik|DSP21 dual specificity phosphatase 21 0.000000 0.394904 -4.987316 chr2-502 chr2 37689543 37689699 + 30.5 NA intron (NM_146122, intron 13 of 21) intron (NM_146122, intron 13 of 21) 91364 NM_001163566 241324 Mm.392369 XM_140952 Crb2 5930402A21|BC043114 crumbs homolog 2 (Drosophila) 0.025641 0.547771 -3.930526 chr5-642 chr5 100325836 100325992 + 30.5 NA intron (NM_182841, intron 6 of 7) intron (NM_182841, intron 6 of 7) 45619 NM_026421 67870 Mm.11311 NM_001163035 ENSMUSG00000029326 Enoph1 2310057D15Rik|BB183658|C81437 enolase-phosphatase 1 0.006410 0.464968 -3.673659 chr2-647 chr2 181001713 181001869 + 30.5 NA Intergenic Intergenic -33206 NM_015730 11438 Mm.252369 NM_015730 ENSMUSG00000027577 Chrna4 Acra-4|Acra4|EBN1|ENFL1 cholinergic receptor, nicotinic, alpha polypeptide 4 0.019231 0.522293 -5.197164 chr11-523 chr11 62459653 62459809 + 30.5 NA intron (NM_198861, intron 1 of 3) intron (NM_198861, intron 1 of 3) 4987 NM_198861 192976 Mm.339972 NM_198861 ENSMUSG00000046417 BC046404 MGC59632 cDNA sequence BC046404 0.006410 0.554140 -3.151979 chr6-375 chr6 72579543 72579699 + 30.5 NA intron (NM_009332, intron 3 of 11) intron (NM_009332, intron 3 of 11) -33112 NM_009443 22134 Mm.246563 XM_001471628 ENSMUSG00000056429 Tgoln1 AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1 trans-golgi network protein 0.019231 0.452229 -2.106433 chr12-494 chr12 107993201 107993357 + 30.5 NA Intergenic Intergenic 457942 NM_001079883 58208 Mm.392694 NM_001079883 ENSMUSG00000048251 Bcl11b 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 B-cell leukemia/lymphoma 11B 0.012821 0.490446 -2.362709 chr4-537 chr4 116911923 116912079 + 30.5 NA intron (NM_025739, intron 2 of 14) intron (NM_025739, intron 2 of 14) 82846 NM_025739 66743 Mm.470234 NM_025739 ENSMUSG00000028677 Rnf220 4732477A13|4931406I20Rik|5730503K05Rik|AV302541 ring finger protein 220 0.019231 0.464968 -3.566523 chr1-762 chr1 169100640 169100796 + 30.5 NA intron (NM_030724, intron 1 of 6) intron (NM_030724, intron 1 of 6) 21084 NM_030724 80914 Mm.440156 NM_030724 ENSMUSG00000026558 Uck2 AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk uridine-cytidine kinase 2 0.019231 0.458599 1.355800 chr1-622 chr1 54383496 54383527 + 30.5 NA promoter-TSS (NM_001033194) promoter-TSS (NM_001033194) 5 NM_001033194 98488 Mm.25856 NM_001033194 ENSMUSG00000041303 Gtf3c3 AL022818|TF3C-gamma|TFIIIC102 general transcription factor IIIC, polypeptide 3 0.032258 0.656250 -3.300970 chr13-321 chr13 73290560 73290716 + 30.5 NA Intergenic Intergenic 195163 NM_010574 16372 Mm.28888 NM_010574 ENSMUSG00000001504 Irx2 IRX6|MGC103290 Iroquois related homeobox 2 (Drosophila) 0.000000 0.401274 -4.496294 chr2-569 chr2 113241234 113241390 + 30.5 NA intron (NM_001043322, intron 3 of 18) intron (NM_001043322, intron 3 of 18) 112738 NM_010230 14260 Mm.4938 NM_001043322 ENSMUSG00000044042 Fmn1 BB164513|Fmn|formin-1|ld formin 1 0.006410 0.458599 -9.149942 chr5-673 chr5 121879606 121879762 + 30.5 NA promoter-TSS (NM_178799) promoter-TSS (NM_178799) -129 NM_178799 338350 Mm.45423 XM_488540 ENSMUSG00000042647 9330129D05Rik - RIKEN cDNA 9330129D05 gene 0.153846 0.770701 -5.850500 chr5-672 chr5 121184714 121184870 + 30.5 NA Intergenic Intergenic 9358 NM_133893 100535 Mm.247620 NM_133893 ENSMUSG00000032623 Oas1d AA536864|C85127|oasl8 2'-5' oligoadenylate synthetase 1D 0.006410 0.458599 0.368772 chr3-407 chr3 101573709 101573865 + 30.5 NA intron (NM_207205, intron 7 of 10) intron (NM_207205, intron 7 of 10) 67602 NM_207205 78908 Mm.458336 NM_207205 ENSMUSG00000042035 Igsf3 1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466 immunoglobulin superfamily, member 3 0.019231 0.598726 -7.709649 chr16-275 chr16 85058720 85058876 + 30.5 NA Intergenic Intergenic -1649 NM_007471 11820 Mm.277585 NM_007471 ENSMUSG00000022892 App AL024401|Abeta|Adap|Cvap|E030013M08Rik|appican|betaAPP amyloid beta (A4) precursor protein 0.006410 0.375796 -7.962379 chr15-231 chr15 28829873 28830029 + 30.5 NA Intergenic Intergenic 681597 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnahc5 AU022615|Dnah5|KIAA1603|Mdnah5|mKIAA1603 dynein, axonemal, heavy chain 5 0.000000 0.445860 -2.235837 chr2-488 chr2 32235996 32236152 + 30.5 NA TTS (NM_146118) TTS (NM_146118) 17086 NM_001164358 227731 Mm.473265 NM_001164357 ENSMUSG00000026819 Slc25a25 1110030N17Rik|MCSC|MGC36388|mKIAA1896 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 0.012821 0.547771 -3.664842 chr2-624 chr2 166627805 166627961 + 30.5 NA intron (NM_023565, intron 16 of 24) intron (NM_023565, intron 16 of 24) 30583 NM_023565 110750 Mm.22417 NM_023565 ENSMUSG00000002718 Cse1l 2610100P18Rik|AA407533|Capts|Cas|Xpo2 chromosome segregation 1-like (S. cerevisiae) 0.000000 0.439490 -5.008947 chr8-420 chr8 129480787 129480943 + 30.5 NA Intergenic CpG -1339 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.096154 0.700637 2.926081 chr11-537 chr11 72860725 72860881 + 30.5 NA Intergenic ID_B1|SINE|B4 -3258 NM_025818 66874 Mm.41903 NM_025818 ENSMUSG00000020783 1200014J11Rik C130061O14Rik|C78393 RIKEN cDNA 1200014J11 gene 0.006410 0.471338 -2.862084 chr17-359 chr17 46174560 46174716 + 30.5 NA promoter-TSS (NM_145488) promoter-TSS (NM_145488) -15 NM_145488 224824 Mm.299399 NM_145488 ENSMUSG00000002763 Pex6 AI132582|D130055I09Rik|KIAA4177|MGC6455|mKIAA4177 peroxisomal biogenesis factor 6 0.083333 0.617834 -0.749268 chr15-274 chr15 76967490 76967646 + 30.5 NA intron (NM_175387, intron 2 of 12) intron (NM_175387, intron 2 of 12) 13499 NM_001110830 93686 Mm.202774 NM_001110827 ENSMUSG00000033565 Rbm9 2810460A15Rik|AA407676|AI118529|Fbm2|Fxh|Hrnbp2 RNA binding motif protein 9 0.000000 0.496815 1.023660 chr13-308 chr13 57890541 57890697 + 30.5 NA intron (NM_001166464, intron 2 of 10) intron (NM_001166464, intron 2 of 10) 27336 NM_009262 20745 Mm.379020 NM_001166463 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 0.012821 0.560510 -2.938411 chr5-685 chr5 130101803 130101959 + 30.5 NA promoter-TSS (NM_009838) promoter-TSS (NM_009838) 81 NM_133900 100678 Mm.271784 NM_133900 ENSMUSG00000029446 Psph AI480570|PSP|PSPase phosphoserine phosphatase 0.102564 0.605096 -0.588098 chr3-368 chr3 31477211 31477367 + 30.5 NA intron (NM_172861, intron 1 of 7) intron (NM_172861, intron 1 of 7) 23908 NM_172861 241919 Mm.477224 NM_172861 ENSMUSG00000069072 Slc7a14 A930013N06|BC061928 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 0.006410 0.535032 1.096717 chr9-469 chr9 60490767 60490923 + 30.5 NA Intergenic Intergenic -4705 NM_001146046 102747 Mm.269413 NM_001146046 ENSMUSG00000047766 Lrrc49 AI430817|AW050057|D430025H09Rik leucine rich repeat containing 49 0.006410 0.509554 -2.048970 chr15-308 chr15 103068390 103068546 + 30.5 NA promoter-TSS (NM_001076789) promoter-TSS (NM_001076789) 3 NR_002885 654467 Mm.432031 XM_001481145 Gm10052 ENSMUSG00000058922|XM_001481145 heterogeneous nuclear ribonucleoprotein A1 pseudogene 0.089744 0.554140 -4.291199 chr8-370 chr8 77783532 77783688 + 30.5 NA intron (NM_027837, intron 1 of 3) intron (NM_027837, intron 1 of 3) 14365 NM_027837 71597 Mm.158735 NM_027837 ENSMUSG00000031621 Isx 9130012O13Rik|Pix-1 intestine specific homeobox 0.000000 0.375796 -2.012410 chr5-562 chr5 15370600 15370756 + 30.5 NA Intergenic Intergenic -75836 NM_001110843 12293 Mm.159842 NM_001110843 ENSMUSG00000040118 Cacna2d1 Cacna2|Cchl2a|MGC141430 calcium channel, voltage-dependent, alpha2/delta subunit 1 0.000000 0.331210 -1.300632 chr4-572 chr4 148573368 148573524 + 30.5 NA exon (NM_177672, exon 4 of 6) exon (NM_177672, exon 4 of 6) 8388 NM_001025106 230917 Mm.266704 NM_001025106 ENSMUSG00000044700 Tmem201 9430091K04|AV028368|D4Ertd429e transmembrane protein 201 0.064103 0.617834 9.612339 chr9-414 chr9 14294916 14295072 + 30.5 NA 3' UTR (NM_001081395, exon 13 of 13) 3' UTR (NM_001081395, exon 13 of 13) 43979 NM_023153 66070 Mm.245938 NM_023153 ENSMUSG00000004096 Cwc15 0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1 CWC15 homolog (S. cerevisiae) 0.012821 0.464968 2.477933 chr19-169 chr19 38310832 38310988 + 30.5 NA Intergenic Intergenic -19015 NM_020278 56839 Mm.298251 NM_020278 ENSMUSG00000067242 Lgi1 BB130740 leucine-rich repeat LGI family, member 1 0.000000 0.382166 1.558474 chr12-448 chr12 80648941 80649097 + 30.5 NA intron (NM_009014, intron 8 of 10) intron (NM_009014, intron 8 of 10) 382834 NM_007564 12192 Mm.235132 NM_007564 ENSMUSG00000021127 Zfp36l1 AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1 zinc finger protein 36, C3H type-like 1 0.012821 0.420382 -3.673659 chr2-493 chr2 33289739 33289895 + 30.5 NA intron (NM_027947, intron 1 of 3) intron (NM_027947, intron 1 of 3) 724 NM_027947 71834 Mm.44186 NM_001025594 ENSMUSG00000026788 Zbtb43 1700010E06Rik|Zfp297b|mKIAA0414 zinc finger and BTB domain containing 43 0.006410 0.515924 -5.826496 chr8-390 chr8 121055161 121055317 + 30.5 NA Intergenic Intergenic -114492 NM_019707 12554 Mm.334841 NM_019707 ENSMUSG00000031841 Cdh13 4932416G01Rik|Cdht|T-cadherin|Tcad cadherin 13 0.019231 0.503185 6.801061 chr14-145 chr14 10708597 10708753 + 30.5 NA intron (NM_008981, intron 2 of 29) intron (NM_008981, intron 2 of 29) 361856 NM_008981 19270 Mm.431266 NM_008981 ENSMUSG00000021745 Ptprg 5430405N12Rik|AW046354|AW549872|RPTPgamma protein tyrosine phosphatase, receptor type, G 0.000000 0.388535 -2.860153 chr11-605 chr11 112115227 112115383 + 30.5 NA Intergenic Intergenic 412141 NR_024085 217294 Mm.441922 XM_001476709 BC006965 MGC6956|MGC6983 cDNA sequence BC006965 0.006410 0.509554 3.046152 chr18-224 chr18 15006071 15006227 + 30.5 NA intron (NM_001100449, intron 14 of 14) intron (NM_001100449, intron 14 of 14) 79887 NM_001100449 72504 Mm.312233 XM_128905 Taf4b 105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII105|Taf2c2 TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor 0.000000 0.426752 1.118228 chr8-374 chr8 87961730 87961886 + 30.5 NA promoter-TSS (NM_001039514) promoter-TSS (NM_001039514) -53 NM_001039514 330817 Mm.456030 NM_001039514 ENSMUSG00000060038 Dhps Dhs|MGC49129|MGC74384 deoxyhypusine synthase 0.089744 0.630573 -2.715834 chr2-540 chr2 74508622 74508778 + 30.5 NA TTS (NM_008276) TTS (NM_008276) 2373 NM_008276 15437 Mm.280673 NM_008276 ENSMUSG00000027102 Hoxd8 4921540P06Rik|AI047735|Hox-4.3|Hox-5.4 homeobox D8 0.025641 0.490446 -3.723377 chr7-354 chr7 107161888 107162044 + 30.5 NA promoter-TSS (NM_021889) promoter-TSS (NM_021889) 0 NM_021889 60510 Mm.302793 NM_021889 ENSMUSG00000062542 Syt9 - synaptotagmin IX 0.160256 0.777070 -7.024827 chr11-494 chr11 28379551 28379707 + 30.5 NA intron (NM_001166661, intron 2 of 3) intron (NM_001166661, intron 2 of 3) 104667 NM_001166661 216613 Mm.93759 NM_001166661 ENSMUSG00000032878 Ccdc85a E030025D05Rik coiled-coil domain containing 85A 0.006410 0.388535 4.304803 chr2-547 chr2 76972282 76972438 + 30.5 NA promoter-TSS (NM_001025576) promoter-TSS (NM_001025576) -886 NM_001025576 545428 Mm.26579 NM_001025576 ENSMUSG00000044033 Ccdc141 2610301F02Rik|ENSMUSG00000075261 coiled-coil domain containing 141 0.000000 0.445860 -8.237087 chr1-671 chr1 84157390 84157546 + 30.5 NA intron (NM_001003948, intron 1 of 2) intron (NM_001003948, intron 1 of 2) 6202 NM_001003948 98496 Mm.187470 NM_001003948 ENSMUSG00000045658 Pid1 5033414K04Rik|MGC90850 phosphotyrosine interaction domain containing 1 0.012821 0.382166 2.450345 chr8-396 chr8 123221763 123221919 + 30.5 NA Intergenic Intergenic -153001 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.038462 0.541401 -3.487467 chr13-327 chr13 90656871 90657027 + 30.5 NA Intergenic Intergenic 93044 NM_025335 66074 Mm.241387 XM_001479626 ENSMUSG00000012422 Tmem167 0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a transmembrane protein 167 0.006410 0.433121 1.046999 chr15-234 chr15 31199817 31199973 + 30.5 NA intron (NM_146057, intron 2 of 3) intron (NM_146057, intron 2 of 3) 30922 NM_146057 223453 Mm.222867 NM_146057 ENSMUSG00000039168 Dap 4921531N22Rik|AI789753|AU040360|MGC19154|MGC6998 death-associated protein 0.025641 0.471338 -2.190170 chr13-329 chr13 93634644 93634800 + 30.5 NA Intergenic Intergenic -3159 NM_173392 218441 Mm.259585 NM_173392 ENSMUSG00000021706 Zfyve16 AI035632|B130024H06Rik|B130031L15|mKIAA0305 zinc finger, FYVE domain containing 16 0.000000 0.426752 -1.214401 chr1-676 chr1 88981953 88982109 + 30.5 NA intron (NM_021306, intron 9 of 16) intron (NM_021306, intron 9 of 16) 4167 NM_021306 13599 Mm.140765 NM_021306 ENSMUSG00000026247 Ecel1 DINE|xce endothelin converting enzyme-like 1 0.038462 0.579618 -3.151335 chr11-567 chr11 94493348 94493504 + 30.5 NA exon (NM_145828, exon 1 of 11) exon (NM_145828, exon 1 of 11) 157 NM_145828 217119 Mm.100638 NM_145828 ENSMUSG00000020868 Xylt2 E030002B02Rik|XT-II|XT2|xylT-II xylosyltransferase II 0.102564 0.707006 -4.968702 chr8-380 chr8 105386370 105386526 + 30.5 NA Intergenic Intergenic 287792 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|MGC25339 cadherin 11 0.012821 0.407643 -6.668430 chr5-633 chr5 96175907 96176063 + 30.5 NA Intergenic (TATG)n|Simple_repeat|Simple_repeat -21255 NM_018866 55985 Mm.10116 NM_018866 ENSMUSG00000023078 Cxcl13 ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13 chemokine (C-X-C motif) ligand 13 0.000000 0.401274 -3.706529 chr4-462 chr4 19636193 19636349 + 30.5 NA promoter-TSS (NM_177327) promoter-TSS (NM_177327) -131 NM_177327 107568 Mm.78312 NM_177327 ENSMUSG00000041058 Wwp1 8030445B08Rik|AIP5|SDRP1|Tiul1 WW domain containing E3 ubiquitin protein ligase 1 0.147436 0.777070 -3.451707 chr1-788 chr1 187714600 187714756 + 30.5 NA Intergenic L1MA5|LINE|L1 103420 NM_146106 226791 Mm.257116 NM_146106 ENSMUSG00000039246 Lyplal1 BC027340|MGC28394|Q96AVO lysophospholipase-like 1 0.000000 0.369427 -6.127926 chr14-187 chr14 100438778 100438934 + 30.5 NA intron (NM_001081278, intron 1 of 17) intron (NM_001081278, intron 1 of 17) 56078 NM_001081278 210789 Mm.320639 NM_001081278 ENSMUSG00000033083 Tbc1d4 5930406J04Rik|A930035N22|AV295684|As160|KIAA0603 TBC1 domain family, member 4 0.006410 0.394904 5.521451 chr5-583 chr5 35371992 35372148 + 30.5 NA Intergenic Intergenic -1874 NM_172708 231134 Mm.205483 NM_172708 ENSMUSG00000044716 Dok7 A930013K19Rik|AW049091|Dok-7|EF-12|MGC107606|Oit5 docking protein 7 0.044872 0.630573 -3.872824 chr1-709 chr1 129583410 129583566 + 30.5 NA intron (NM_001033041, intron 6 of 9) intron (NM_001033041, intron 6 of 9) -18221 NM_028399 72949 Mm.392269 NM_028399 ENSMUSG00000026349 Ccnt2 2900041I18Rik|C81304|CycT2 cyclin T2 0.012821 0.458599 -2.995517 chr10-378 chr10 80595546 80595702 + 30.5 NA exon (NM_001190474, exon 9 of 9) exon (NM_001190474, exon 9 of 9) -2195 NR_015477 69678 Mm.81562 NR_015477 2310050B05Rik - RIKEN cDNA 2310050B05 gene 0.160256 0.707006 -7.472734 chr1-732 chr1 157253835 157253991 + 30.5 NA Intergenic Intergenic -66424 NM_001145781 72482 Mm.288249 NM_001145781 ENSMUSG00000033701 Acbd6 0610010G04Rik|2610100E10Rik|MGC106946|MGC144461|MGC144462 acyl-Coenzyme A binding domain containing 6 0.038462 0.484076 -1.919505 chr5-602 chr5 65633342 65633498 + 30.5 NA intron (NM_031180, intron 1 of 4) intron (NM_031180, intron 1 of 4) 5875 NM_031180 83379 Mm.45274 NM_031180 ENSMUSG00000029195 Klb AV071179|betaKlotho klotho beta 0.012821 0.458599 -4.789794 chrX-63 chrX 95705474 95705630 + 30.5 NA Intergenic Intergenic -32098 NM_008853 18744 Mm.8211 NM_001083110 ENSMUSG00000034403 Pja1 - praja1, RING-H2 motif containing 0.019231 0.496815 -5.237974 chr1-739 chr1 159807165 159807321 + 30.5 NA Intergenic Intergenic 385694 NM_207583 240843 Mm.329579 NM_207583 ENSMUSG00000004031 Fam5b 6430517E21Rik|BB361039|mKIAA1747 family with sequence similarity 5, member B 0.012821 0.471338 -5.790770 chr7-338 chr7 80310111 80310267 + 30.5 NA Intergenic B3|SINE|B2 -31245 NM_001081454 18550 Mm.5241 NM_001081454 ENSMUSG00000030530 Furin 9130404I01Rik|Fur|PACE|Pcsk3|SPC1 furin (paired basic amino acid cleaving enzyme) 0.006410 0.439490 -1.466927 chr1-604 chr1 36582875 36583031 + 30.5 NA intron (NM_001126046, intron 4 of 14) intron (NM_001126046, intron 4 of 14) 44776 NM_001126046 381337 Mm.477231 XM_889674 ENSMUSG00000046337 Fam178b 1700024G10Rik|Gm990|MGC141033|MGC60970 family with sequence similarity 178, member B 0.006410 0.471338 -4.315990 chr12-516 chr12 118657169 118657325 + 30.5 NA Intergenic Intergenic -14102 NM_010060 13411 Mm.390540 NM_010060 ENSMUSG00000018581 Dnahc11 iv|lrd dynein, axonemal, heavy chain 11 0.006410 0.445860 -2.710953 chr5-575 chr5 28344499 28344655 + 30.5 NA Intergenic Intergenic -57621 NM_153526 231070 Mm.30221 NM_153526 ENSMUSG00000045294 Insig1 1810013C12Rik|Insig-1 insulin induced gene 1 0.019231 0.490446 0.916458 chr13-320 chr13 72417606 72417762 + 30.5 NA Intergenic Intergenic 12030 NM_010573 16371 Mm.316056 NM_010573 ENSMUSG00000060969 Irx1 - Iroquois related homeobox 1 (Drosophila) 0.006410 0.439490 -6.188166 chr2-553 chr2 84638006 84638162 + 30.5 NA Intergenic Intergenic -2162 NM_001081349 72401 Mm.22716 NM_001081349 ENSMUSG00000027075 Slc43a1 2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504 solute carrier family 43, member 1 0.019231 0.528662 -1.699619 chr9-541 chr9 121991659 121991815 + 30.5 NA intron (NM_133741, intron 3 of 6) intron (NM_133741, intron 3 of 6) 25774 NM_133741 20623 Mm.441420 NM_001164572 ENSMUSG00000038145 Snrk 2010012F07Rik|AI448042|AW547029|E030034B15|MGC28970|R74830|mKIAA0096 SNF related kinase 0.006410 0.477707 -2.779876 chr14-175 chr14 67855429 67855585 + 30.5 NA Intergenic Intergenic -127111 NM_009285 20855 Mm.20911 NM_009285 ENSMUSG00000014813 Stc1 Stc stanniocalcin 1 0.006410 0.471338 -4.585665 chr3-396 chr3 89332226 89332382 + 30.5 NA promoter-TSS (NM_183037) promoter-TSS (NM_183037) -60 NM_025327 66059 Mm.177991 NM_025327 ENSMUSG00000042747 Krtcap2 0610010I12Rik|Kcp2 keratinocyte associated protein 2 0.064103 0.579618 0.997541 chr1-693 chr1 107712863 107713019 + 30.5 NA Intergenic Intergenic 104672 NM_009399 21934 Mm.6251 NM_009399 ENSMUSG00000026321 Tnfrsf11a Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK tumor necrosis factor receptor superfamily, member 11a 0.006410 0.401274 1.339855 chr13-343 chr13 110971871 110972027 + 30.5 NA intron (NM_011056, intron 7 of 16) intron (NM_011056, intron 7 of 16) -52737 NR_035442 100316683 NR_035442 Mir1904 mmu-mir-1904 microRNA mir-1904 0.019231 0.471338 -3.343624 chr12-444 chr12 77287569 77287725 + 30.5 NA intron (NM_028356, intron 1 of 2) intron (NM_028356, intron 1 of 2) 657 NM_001172104 109929 Mm.402165 NM_001172104 ENSMUSG00000056459 Zbtb25 2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50 zinc finger and BTB domain containing 25 0.025641 0.464968 -3.811611 chr11-507 chr11 52961747 52961903 + 30.5 NA intron (NM_177059, intron 6 of 15) intron (NM_177059, intron 6 of 15) 182077 NM_008300 15525 Mm.239865 NM_008300 ENSMUSG00000020361 Hspa4 70kDa|AI317151|APG-2|Hsp110|Hsp70RY|KIAA4025|mKIAA4025 heat shock protein 4 0.000000 0.522293 -3.719918 chr4-523 chr4 106715012 106715168 + 30.5 NA intron (NM_001081272, intron 4 of 4) intron (NM_001081272, intron 4 of 4) 7979 NM_001081272 546840 Mm.331755 NM_001081272 ENSMUSG00000070877 Ldlrad1 OTTMUSG00000008594 low density lipoprotein receptor class A domain containing 1 0.006410 0.503185 -3.536161 chr16-246 chr16 25171960 25172116 + 30.5 NA Intergenic Intergenic -30127 NM_175165 71338 Mm.126851 NM_175165 ENSMUSG00000048399 Tprg 5430420C16Rik|Tprg1 transformation related protein 63 regulated 0.006410 0.528662 -3.725265 chr8-348 chr8 36963975 36964131 + 30.5 NA promoter-TSS (NM_026067) promoter-TSS (NM_026067) -3 NM_026067 67276 Mm.207534 NM_026067 ENSMUSG00000031527 Eri1 3'hexo|3110010F15Rik|Thex1|eri-1 exoribonuclease 1 0.173077 0.726115 -5.193310 chr2-459 chr2 4456905 4457061 + 30.5 NA intron (NM_001177843, intron 11 of 23) intron (NM_001177843, intron 11 of 23) -20042 NM_001177844 209630 Mm.480116 NM_001177843 ENSMUSG00000026657 Frmd4a 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294 FERM domain containing 4A 0.012821 0.560510 -6.789879 chr3-465 chr3 155068111 155068267 + 30.5 NA intron (NM_028938, intron 5 of 7) intron (NM_028938, intron 5 of 7) 39463 NM_028938 74435 Mm.195711 NM_028938 ENSMUSG00000028182 Lrriq3 4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44|MGC132959 leucine-rich repeats and IQ motif containing 3 0.006410 0.388535 -1.338742 chr6-381 chr6 83472596 83472693 + 30.5 NA promoter-TSS (NM_001162521) promoter-TSS (NM_001162521) -17 NM_001162521 27369 Mm.42234 NM_001162521 ENSMUSG00000014554 Dguok dGK|dGK1|dGK2|dGK3 deoxyguanosine kinase 0.082474 0.632653 -7.041848 chr18-260 chr18 72871784 72871940 + 30.5 NA Intergenic Lx5|LINE|L1 -395424 NM_007831 13176 Mm.167882 NM_007831 ENSMUSG00000060534 Dcc C030036D22Rik|Igdcc1 deleted in colorectal carcinoma 0.000000 0.407643 -4.108047 chr1-686 chr1 93276558 93276714 + 30.5 NA intron (NM_011066, intron 4 of 22) intron (NM_011066, intron 4 of 22) 13098 NM_011066 18627 Mm.218141 NM_011066 ENSMUSG00000055866 Per2 mKIAA0347|mPer2 period homolog 2 (Drosophila) 0.019231 0.547771 -3.579683 chr17-314 chr17 23338276 23338432 + 30.5 NA exon (NM_001033425, exon 6 of 6) exon (NM_001033425, exon 6 of 6) 9877 NM_001033425 332221 Mm.270315 NM_001033425 ENSMUSG00000023902 Zscan10 BC068284|Zfp206|Zkscan10|Znf206 zinc finger and SCAN domain containing 10 0.044872 0.598726 -4.167644 chr6-361 chr6 54045889 54046045 + 30.5 NA intron (NM_001163640, intron 1 of 12) intron (NM_001163640, intron 1 of 12) 76458 NM_001163640 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.019231 0.484076 -0.593060 chr10-403 chr10 93827819 93827975 + 30.5 NA Intergenic Intergenic -99395 NR_033209 215472 Mm.255656 NM_174999 ENSMUSG00000053420 Gm4792 E130012K09|EG215472 predicted gene 4792 0.006410 0.490446 -4.629756 chr6-395 chr6 90863741 90863897 + 30.5 NA Intergenic Intergenic -88192 NM_001134384 232227 Mm.473438 XM_001479632 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 IQ motif and Sec7 domain 1 0.006410 0.554140 -4.423221 chr1-740 chr1 160147051 160147207 + 30.5 NA intron (NM_207583, intron 1 of 7) intron (NM_207583, intron 1 of 7) 45808 NM_207583 240843 Mm.329579 NM_207583 ENSMUSG00000004031 Fam5b 6430517E21Rik|BB361039|mKIAA1747 family with sequence similarity 5, member B 0.019231 0.471338 -1.839461 chr12-391 chr12 16692968 16693124 + 30.5 NA Intergenic Intergenic 14097 NM_008747 18217 Mm.281715 NM_008747 ENSMUSG00000020591 Ntsr2 NT2R|NTRL neurotensin receptor 2 0.000000 0.394904 -1.105095 chr12-435 chr12 67977896 67977964 + 30.5 NA intron (NM_207010, intron 1 of 15) intron (NM_207010, intron 1 of 15) 163224 NM_207010 320772 Mm.481303 NM_001193266 ENSMUSG00000034912 Mdga2 6720489L24Rik|9330209L04Rik|Mamdc1 MAM domain containing glycosylphosphatidylinositol anchor 2 0.044118 0.434783 -0.981627 chr9-474 chr9 62027904 62028060 + 30.5 NA Intergenic B4A|SINE|B4 52203 NM_025721 66712 Mm.263615 NM_025721 ENSMUSG00000046846 Spesp1 4921508E09Rik|AI428149 sperm equatorial segment protein 1 0.000000 0.484076 6.216472 chrX-70 chrX 125056073 125056229 + 30.5 NA Intergenic Intergenic -39937 NM_172493 54004 Mm.10763 NM_017398 ENSMUSG00000034480 Diap2 Dia3|Diaph2|Drf2|E430022I22Rik diaphanous homolog 2 (Drosophila) 0.006410 0.420382 -4.875305 chr12-501 chr12 110997395 110997551 + 30.5 NA intron (NM_001081457, intron 5 of 12) intron (NM_001081457, intron 5 of 12) -41707 NR_033340 319786 Mm.460448 NR_033340 B930059L03Rik - RIKEN cDNA B930059L03 gene 0.019231 0.579618 2.618943 chr4-456 chr4 9613182 9613338 + 30.5 NA Intergenic Intergenic -16951 NM_001177849 65973 Mm.412008 NM_001177849 ENSMUSG00000028207 Asph 2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37 aspartate-beta-hydroxylase 0.006410 0.331210 -5.970067 chr3-356 chr3 9035222 9035378 + 30.5 NA Intergenic Intergenic -47712 NM_001025264 21985 Mm.371590 NM_001025261 ENSMUSG00000027506 Tpd52 AI043038|mD52 tumor protein D52 0.000000 0.445860 -3.278203 chr16-256 chr16 33848633 33848789 + 30.5 NA intron (NM_001145884, intron 10 of 14) intron (NM_001145884, intron 10 of 14) 38039 NM_009471 22247 Mm.466951 NM_009471 ENSMUSG00000022814 Umps 1700095D23Rik|AA408257|AL033308|BB164745 uridine monophosphate synthetase 0.000000 0.528662 -4.285808 chr12-484 chr12 103081961 103082117 + 30.5 NA intron (NM_172584, intron 1 of 9) intron (NM_172584, intron 1 of 9) 4031 NR_035457 100316812 NR_035457 Mir1936 mmu-mir-1936 microRNA mir-1936 0.032051 0.617834 -2.029453 chr12-502 chr12 111252203 111252359 + 30.5 NA Intergenic Intergenic 36465 NM_011973 26448 Mm.140948 NM_011973 ENSMUSG00000056458 Stk30 MGC107277|MGC46883|MOK|RAGE1|Rage serine/threonine kinase 30 0.019231 0.560510 -0.338868 chr7-389 chr7 140080166 140080322 + 30.5 NA intron (NM_172909, intron 10 of 13) intron (NM_172909, intron 10 of 13) 10658 NM_172909 244233 Mm.19283 NM_172909 ENSMUSG00000025461 Cd163l1 B430307C05|E430002D04Rik|Scart1 CD163 molecule-like 1 0.019231 0.541401 -4.588009 chr1-794 chr1 192020648 192020804 + 30.5 NA Intergenic Intergenic -149258 NM_008937 19130 Mm.392678 NM_008937 ENSMUSG00000010175 Prox1 A230003G05Rik prospero-related homeobox 1 0.006410 0.484076 -4.290056 chr4-475 chr4 48557439 48557595 + 30.5 NA Intergenic Intergenic -3528 NM_001145925 66665 Mm.140749 NM_001145924 ENSMUSG00000039693 5730528L13Rik 2410046L14Rik|2810429P03Rik RIKEN cDNA 5730528L13 gene 0.006410 0.439490 -4.665223 chr6-334 chr6 18456222 18456378 + 30.5 NA intron (NM_080285, intron 1 of 22) intron (NM_080285, intron 1 of 22) 8525 NM_080285 30785 Mm.480377 NM_080285 ENSMUSG00000000416 Cttnbp2 3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758 cortactin binding protein 2 0.006410 0.324841 -3.319404 chr4-516 chr4 103514465 103514621 + 30.5 NA Intergenic Intergenic -350948 NM_010014 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled homolog 1 (Drosophila) 0.012821 0.401274 -0.471521 chr10-387 chr10 83485327 83485483 + 30.5 NA Intergenic Intergenic 332742 NM_001145198 69784 Mm.271188 XM_899407 1500009L16Rik 2700050C19Rik|OCC-1 RIKEN cDNA 1500009L16 gene 0.012821 0.484076 -2.769354 chr1-715 chr1 133850097 133850253 + 30.5 NA intron (NM_007923, intron 4 of 4) intron (NM_007923, intron 4 of 4) 15025 NM_007923 13714 Mm.254233 NM_007923 ENSMUSG00000026436 Elk4 2310011G17Rik|A130026I01Rik|BB162516|Sap1 ELK4, member of ETS oncogene family 0.019231 0.484076 -3.174670 chr5-605 chr5 66341429 66341585 + 30.5 NA intron (NM_139065, intron 2 of 6) intron (NM_139065, intron 2 of 6) 35806 NM_139065 245945 Mm.426431 NM_001127382 ENSMUSG00000070780 Rbm47 9530077J19Rik|MGC18900 RNA binding motif protein 47 0.012821 0.515924 -9.758645 chr4-502 chr4 95459366 95459522 + 30.5 NA promoter-TSS (NM_030014) promoter-TSS (NM_030014) 48 NM_030014 77963 Mm.49994 NM_030014 ENSMUSG00000028572 Hook1 A930033L17Rik|azh hook homolog 1 (Drosophila) 0.179487 0.757962 -4.629728 chr10-354 chr10 67380513 67380669 + 30.5 NA intron (NM_001081346, intron 1 of 12) intron (NM_001081346, intron 1 of 12) 5637 NM_001081346 170799 Mm.209844 NM_001081346 ENSMUSG00000037846 Rtkn2 B130039D23Rik|MGC189880|Mbf|Plekhk1 rhotekin 2 0.044872 0.515924 -7.325641 chrX-78 chrX 157900544 157900700 + 30.5 NA intron (NM_178256, intron 2 of 17) intron (NM_178256, intron 2 of 17) 87084 NM_178256 194590 Mm.442441 NM_178256 ENSMUSG00000040855 Reps2 POB1 RALBP1 associated Eps domain containing protein 2 0.019231 0.420382 -3.109939 chr9-480 chr9 66774202 66774358 + 30.5 NA exon (NM_030717, exon 1 of 6) exon (NM_030717, exon 1 of 6) 348 NM_030717 80907 Mm.157882 NM_030717 ENSMUSG00000032370 Lactb LACT-1|Lact1|Mrpl56 lactamase, beta 0.121795 0.732484 -4.296546 chr7-333 chr7 68282285 68282441 + 30.5 NA Intergenic Intergenic 135012 NM_001013811 434197 Mm.216193 NM_001013811 ENSMUSG00000074071 Fam169b EG434197 family with sequence similarity 169, member B 0.006410 0.464968 -2.336378 chr1-802 chr1 195348250 195348406 + 30.5 NA Intergenic Intergenic -140074 NR_029592 387201 NR_029592 Mir205 Mirn205|mmu-mir-205 microRNA 205 0.006410 0.420382 0.913912 chr12-497 chr12 109147353 109147509 + 30.5 NA intron (NM_027299, intron 1 of 2) intron (NM_027299, intron 1 of 2) 2682 NM_001171002 70059 Mm.207605 NM_001171002 ENSMUSG00000021263 Degs2 2210008A03Rik|AI852933|DES2 degenerative spermatocyte homolog 2 (Drosophila), lipid desaturase 0.012821 0.414013 -6.003695 chr4-482 chr4 62126893 62127049 + 30.5 NA intron (NM_001081650, intron 7 of 10) intron (NM_001081650, intron 7 of 10) 20939 NM_134257 50780 Mm.286753 NM_001081650 ENSMUSG00000059810 Rgs3 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S regulator of G-protein signaling 3 0.025641 0.592357 0.541044 chr11-529 chr11 68010753 68010909 + 30.5 NA intron (NM_018768, intron 7 of 7) intron (NM_018768, intron 7 of 7) 192190 NM_008744 18208 Mm.39095 NM_008744 ENSMUSG00000020902 Ntn1 AI561871|BC019633|Netrin-1 netrin 1 0.012821 0.573248 2.247544 chr4-597 chr4 153996446 153996602 + 30.5 NA Intergenic Intergenic 66148 NM_001081100 76866 Mm.200590 NM_001081100 ENSMUSG00000029049 Morn1 2900057D20Rik|4930417P05Rik|AU042805 MORN repeat containing 1 0.019231 0.592357 -3.559128 chr12-477 chr12 99743473 99743629 + 30.5 NA intron (NM_183186, intron 2 of 5) intron (NM_183186, intron 2 of 5) 107573 NM_183186 71375 Mm.480620 XM_001473733 ENSMUSG00000033713 Foxn3 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1|MGC107530|MGC36260 forkhead box N3 0.000000 0.452229 -5.711398 chr14-164 chr14 47531918 47532074 + 30.5 NA Intergenic B3A|SINE|B2 52827 NM_144841 18424 Mm.134516 NM_144841 ENSMUSG00000021848 Otx2 E130306E05Rik orthodenticle homolog 2 (Drosophila) 0.025641 0.522293 -0.046204 chr5-621 chr5 80659444 80659600 + 30.5 NA Intergenic Lx6|LINE|L1 -1436631 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.000000 0.464968 3.530014 chr11-515 chr11 57824133 57824289 + 30.5 NA Intergenic L2|LINE|L2 -1047 NM_028451 73158 Mm.248843 XM_126172 ENSMUSG00000037331 Larp1 1810024J12Rik|3110040D16Rik|Larp|mKIAA0731 La ribonucleoprotein domain family, member 1 0.012821 0.452229 1.881493 chr6-333 chr6 13563833 13563989 + 30.5 NA Intergenic Intergenic -5848 NM_028990 101118 Mm.254845 NM_028990 ENSMUSG00000029569 Tmem168 5730526F17Rik|8430437G11Rik|AI462344|AI504145 transmembrane protein 168 0.006410 0.433121 -2.541862 chr13-267 chr13 20286895 20287051 + 30.5 NA intron (NM_080288, intron 7 of 20) intron (NM_080288, intron 7 of 20) 94084 NM_080288 140580 Mm.342392 NM_080288 ENSMUSG00000041112 Elmo1 6330578D22Rik|AI173001|C230095H21Rik|CED-12|KIAA0281|mKIAA0281 engulfment and cell motility 1, ced-12 homolog (C. elegans) 0.025641 0.484076 -1.211906 chr12-394 chr12 17752196 17752352 + 30.5 NA intron (NM_016677, intron 1 of 3) intron (NM_016677, intron 1 of 3) 35981 NM_016677 53602 Mm.477743 NM_016677 ENSMUSG00000071379 Hpcal1 NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3 hippocalcin-like 1 0.006410 0.535032 -2.522101 chr2-509 chr2 50410783 50410939 + 30.5 NA Intergenic Intergenic -292175 NM_133839 109129 Mm.29214 NM_133839 ENSMUSG00000026766 Mmadhc 2010311D03Rik|AI314967 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 0.012821 0.439490 -3.135247 chr12-400 chr12 25969347 25969503 + 30.5 NA Intergenic Intergenic -284253 NM_010496 15902 Mm.476766 NM_010496 ENSMUSG00000020644 Id2 AI255428|C78922|Idb2|bHLHb26 inhibitor of DNA binding 2 0.019231 0.554140 2.588761 chr1-636 chr1 63563750 63563906 + 30.5 NA intron (NM_001081658, intron 14 of 14) intron (NM_001081658, intron 14 of 14) 57375 NM_001081658 241073 Mm.297680 NM_001081658 ENSMUSG00000069085 Dytn Gm215 dystrotelin 0.000000 0.426752 -4.296546 chr2-580 chr2 120544090 120544246 + 30.5 NA Intergenic Intergenic -2143 NM_080788 140810 Mm.275698 NM_001024856 ENSMUSG00000027284 Ttbk2 2610507N02Rik|AI326283|B930008N24Rik|KIAA0847|TTK|Ttbk|Ttbk1|mKIAA0847 tau tubulin kinase 2 0.006410 0.464968 -5.074469 chr5-703 chr5 137975686 137975842 + 30.5 NA promoter-TSS (NM_023910) promoter-TSS (NM_023910) -19 NM_023910 78829 Mm.286399 NM_023910 ENSMUSG00000029723 Tsc22d4 0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2 TSC22 domain family, member 4 0.025641 0.611465 -3.677001 chr13-285 chr13 34405690 34405846 + 30.5 NA Intergenic Intergenic -53121 NM_001033167 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik solute carrier family 22, member 23 0.006410 0.503185 3.663657 chr5-680 chr5 125249481 125249637 + 30.5 NA Intergenic Intergenic -42894 NM_028443 73121 Mm.296138 NM_028443 ENSMUSG00000037962 Fam101a 3110032G18Rik|cfm|cfm2 family with sequence similarity 101, member A 0.012821 0.484076 -2.012410 chr1-618 chr1 51940750 51940906 + 30.5 NA Intergenic Intergenic -11960 NM_011487 20849 Mm.1550 NM_011487 ENSMUSG00000062939 Stat4 - signal transducer and activator of transcription 4 0.006410 0.439490 -2.629235 chr9-468 chr9 60295418 60295574 + 30.5 NA intron (NM_001040426, intron 1 of 17) intron (NM_001040426, intron 1 of 17) 13545 NM_001040426 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.006410 0.414013 -4.071437 chr5-662 chr5 114922176 114922332 + 30.5 NA Intergenic L1MB7|LINE|L1 -2834 NM_022017 63873 Mm.266450 NM_022017 ENSMUSG00000014158 Trpv4 0610033B08Rik|MGC150050|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC transient receptor potential cation channel, subfamily V, member 4 0.012821 0.394904 -2.521053 chr8-354 chr8 47831575 47831731 + 30.5 NA Intergenic Intergenic -38165 NM_173789 234219 Mm.145631 NM_173789 ENSMUSG00000047171 Helt A830086M02|Hesl|Mgn|megane Hey-like transcription factor (zebrafish) 0.006410 0.573248 -3.718365 chr10-326 chr10 17251966 17252122 + 30.5 NA Intergenic Intergenic -160599 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.000000 0.509554 -5.614668 chr12-455 chr12 84881066 84881222 + 30.5 NA intron (NM_134188, intron 2 of 2) intron (NM_134188, intron 2 of 2) 3536 NM_134188 171210 Mm.1978 NM_134188 ENSMUSG00000021226 Acot2 AA571646|MTE-I|Mte1 acyl-CoA thioesterase 2 0.038462 0.490446 -5.538450 chr5-674 chr5 122614868 122615024 + 30.5 NA promoter-TSS (NM_019780) promoter-TSS (NM_019780) -83 NM_019780 56433 Mm.445844 NM_019780 ENSMUSG00000029462 Vps29 2010015D08Rik|AW049835|PEP11 vacuolar protein sorting 29 (S. pombe) 0.083333 0.573248 -2.072309 chr10-342 chr10 41275509 41275665 + 30.5 NA intron (NM_001177571, intron 2 of 17) intron (NM_001177571, intron 2 of 17) 581 NM_001177571 75973 Mm.228517 NM_001177571 ENSMUSG00000075225 Ccdc162 5033413D22Rik|Gm61 coiled-coil domain containing 162 0.025641 0.484076 -1.379052 chr1-753 chr1 165280591 165280747 + 30.5 NA Intergenic Intergenic -40353 NM_178883 98376 Mm.32901 NM_178883 ENSMUSG00000040124 Gorab AI467484|NTKL-BP1|Scyl1bp1 golgin, RAB6-interacting 0.012821 0.477707 -1.912655 chr4-474 chr4 47276894 47277050 + 30.5 NA intron (NM_009928, intron 6 of 39) intron (NM_009928, intron 6 of 39) 47861 NM_009928 12819 Mm.233547 NM_009928 ENSMUSG00000028339 Col15a1 - collagen, type XV, alpha 1 0.006410 0.585987 -3.451707 chr1-747 chr1 160995096 160995252 + 30.5 NA Intergenic Intergenic -73828 NM_011931 26374 Mm.328135 NM_011931 ENSMUSG00000040782 Rfwd2 AI316802|C80879|Cop1 ring finger and WD repeat domain 2 0.000000 0.439490 -0.701022 chr12-429 chr12 55431690 55431846 + 30.5 NA Intergenic Intergenic -118824 NR_033689 665239 XM_975549 Gm7550 EG665239|Gm666 predicted gene 7550 0.019231 0.445860 0.172891 chr10-349 chr10 53762332 53762488 + 30.5 NA intron (NM_008548, intron 2 of 12) intron (NM_008548, intron 2 of 12) 1801 NM_008548 17155 Mm.117294 NM_008548 ENSMUSG00000003746 Man1a Man1a1|PCR1 mannosidase 1, alpha 0.012821 0.496815 -6.446212 chr12-407 chr12 29176066 29176222 + 30.5 NA Intergenic Intergenic -7393 NM_053156 94041 Mm.477564 NM_053156 ENSMUSG00000020636 Allc 1700012B22Rik|Alc|MGC124129|MGC124130 allantoicase 0.032051 0.433121 -5.546344 chr10-391 chr10 85047145 85047301 + 30.5 NA intron (NM_001017525, intron 2 of 14) intron (NM_001017525, intron 2 of 14) 19014 NM_001017525 74007 Mm.36544 NM_001017525 ENSMUSG00000020042 Btbd11 6330404E16Rik BTB (POZ) domain containing 11 0.025641 0.509554 -8.409787 chr9-512 chr9 107547182 107547338 + 30.5 NA intron (NM_011349, intron 6 of 17) intron (NM_011349, intron 6 of 17) -9567 NM_008140 14685 Mm.284853 NM_008140 ENSMUSG00000034837 Gnat1 Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin guanine nucleotide binding protein, alpha transducing 1 0.019231 0.598726 0.447030 chr17-327 chr17 28280823 28280979 + 30.5 NA TTS (NM_001034871) TTS (NM_001034871) 3826 NM_001034871 328788 Mm.99400 NM_001034871 ENSMUSG00000024224 Gm749 - predicted gene 749 0.038462 0.452229 -0.144261 chr5-699 chr5 137154533 137154689 + 30.5 NA intron (NM_024474, intron 1 of 12) intron (NM_024474, intron 1 of 12) 13123 NM_024474 140709 Mm.295020 NM_024474 ENSMUSG00000004415 Emid2 9430032K24Rik|BC002218|Col26a|Col26a1|Emu2|MGC7475 EMI domain containing 2 0.012821 0.515924 0.097941 chr3-446 chr3 140297485 140297641 + 30.5 NA Intergenic Intergenic 852179 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 0.000000 0.337580 -6.013557 chr1-651 chr1 73903842 73903998 + 30.5 NA intron (NM_027884, intron 18 of 34) intron (NM_027884, intron 18 of 34) 153734 NM_027884 21961 Mm.309975 XM_619639 Tns1 1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns tensin 1 0.006410 0.560510 -5.781131 chr8-347 chr8 36665062 36665218 + 30.5 NA Intergenic Intergenic -179117 NM_177741 244416 Mm.247126 NM_177741 ENSMUSG00000046794 Ppp1r3b 6430576E21|AW821953|GL protein phosphatase 1, regulatory (inhibitor) subunit 3B 0.000000 0.496815 -3.359163 chr2-646 chr2 180100676 180100832 + 30.5 NA promoter-TSS (NM_019822) promoter-TSS (NM_019822) -241 NM_019822 56436 Mm.379082 NM_019822 ENSMUSG00000039041 Adrm1 1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13 adhesion regulating molecule 1 0.108974 0.726115 -7.303871 chr5-721 chr5 141384347 141384503 + 30.5 NA Intergenic Intergenic -109582 NM_177879 330222 Mm.406697 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik sidekick homolog 1 (chicken) 0.019231 0.388535 -5.074469 chr9-505 chr9 101384584 101384740 + 30.5 NA Intergenic Intergenic -276567 NM_001161362 235542 Mm.335386 XM_001474396 ENSMUSG00000043154 Ppp2r3a 3222402P14Rik|A730042E07|MGC29057 protein phosphatase 2, regulatory subunit B'', alpha 0.012821 0.439490 -4.339830 chr3-420 chr3 108858714 108858870 + 30.5 NA Intergenic Intergenic -8437 NM_029522 76123 Mm.226941 NM_029522 ENSMUSG00000027883 Gpsm2 6230410J09Rik|LGN|Pins G-protein signalling modulator 2 (AGS3-like, C. elegans) 0.012821 0.420382 -2.034606 chr14-186 chr14 99130718 99130874 + 30.5 NA Intergenic Intergenic -97866 NM_010636 16597 Mm.458816 NM_010636 ENSMUSG00000072294 Klf12 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik Kruppel-like factor 12 0.006410 0.343949 6.665267 chr6-351 chr6 48285024 48285180 + 30.5 NA Intergenic Lx8|LINE|L1 -40069 NM_133922 77827 Mm.107646 NM_133922 ENSMUSG00000042810 Krba1 A930040G15Rik|AI448780 KRAB-A domain containing 1 0.000000 0.452229 -3.440977 chr13-273 chr13 24950830 24950986 + 30.5 NA 5' UTR (NM_008156, exon 2 of 26) 5' UTR (NM_008156, exon 2 of 26) 292 NM_008156 14756 Mm.291831 NM_008156 ENSMUSG00000021340 Gpld1 6330541J12Rik|AW546131 glycosylphosphatidylinositol specific phospholipase D1 0.025641 0.484076 1.434018 chr4-538 chr4 117057633 117057789 + 30.5 NA intron (NM_080469, intron 2 of 8) intron (NM_080469, intron 2 of 8) 9286 NM_080469 140546 Mm.235891 NM_080469 ENSMUSG00000033423 Eri3 PINT1|Prnpip1 exoribonuclease 3 0.006410 0.388535 -2.205743 chr3-383 chr3 65434131 65434287 + 30.5 NA intron (NM_010597, intron 8 of 13) intron (NM_010597, intron 8 of 13) 46273 NM_026155 67437 Mm.232728 NM_026155 ENSMUSG00000027828 Ssr3 0610038P07Rik|AL022999|AU022074|AW553833|TRAPG signal sequence receptor, gamma 0.000000 0.369427 -1.728499 chr10-355 chr10 67750223 67750379 + 30.5 NA Intergenic Intergenic -76218 NM_023598 71371 Mm.440357 NM_023598 ENSMUSG00000019947 Arid5b 4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta AT rich interactive domain 5B (MRF1-like) 0.000000 0.414013 -7.970329 chr5-641 chr5 99737783 99737939 + 30.5 NA intron (NR_030692, intron 2 of 3) intron (NR_030692, intron 2 of 3) 231501 NR_030692 319818 Mm.448257 XM_001475144 ENSMUSG00000056908 A930011G23Rik - RIKEN cDNA A930011G23 gene 0.006410 0.522293 -3.140752 chr1-621 chr1 52954750 52954906 + 30.5 NA Intergenic Intergenic -51379 NM_010834 17700 Mm.3514 NM_010834 ENSMUSG00000026100 Mstn Cmpt|Gdf8|MGC124261|MGC124262|MGC124263 myostatin 0.019231 0.445860 -2.938451 chrX-52 chrX 11446636 11446792 + 30.5 NA Intergenic Intergenic -129400 NM_001168321 71458 Mm.196328 NM_001168321 ENSMUSG00000040363 Bcor 5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575 BCL6 interacting corepressor 0.012821 0.484076 2.535293 chr18-250 chr18 53588469 53588625 + 30.5 NA Intergenic Intergenic -1367 NM_001033281 225518 Mm.297645 NM_001033281 ENSMUSG00000069378 Prdm6 Gm92|PRISM PR domain containing 6 0.038462 0.458599 -2.927620 chr11-607 chr11 113246866 113247022 + 30.5 NA intron (NM_027216, intron 5 of 9) intron (NM_027216, intron 5 of 9) 134961 NM_001166503 69806 Mm.341021 NM_001166503 ENSMUSG00000041654 Slc39a11 1810074D23Rik solute carrier family 39 (metal ion transporter), member 11 0.012821 0.464968 -2.938597 chr2-501 chr2 37588550 37588706 + 30.5 NA Intergenic Intergenic -9629 NM_001163566 241324 Mm.392369 XM_140952 Crb2 5930402A21|BC043114 crumbs homolog 2 (Drosophila) 0.019231 0.547771 -4.757705 chr1-591 chr1 16650200 16650356 + 30.5 NA promoter-TSS (NM_027415) promoter-TSS (NM_027415) -126 NM_027415 70397 Mm.194225 NM_026392 ENSMUSG00000025940 Tmem70 1110020A09Rik|2210416J16Rik transmembrane protein 70 0.019231 0.503185 6.988318 chr9-475 chr9 64370900 64371056 + 30.5 NA intron (NM_001134399, intron 5 of 24) intron (NM_001134399, intron 5 of 24) 164784 NM_017382 53869 Mm.1387 NM_017382 ENSMUSG00000004771 Rab11a - RAB11a, member RAS oncogene family 0.012821 0.426752 -4.283877 chr16-283 chr16 93428558 93428714 + 30.5 NA Intergenic Intergenic 63719 NM_145482 224440 Mm.10628 NM_145482 ENSMUSG00000022948 Setd4 AY037804|C21orf18|ORF21 SET domain containing 4 0.006410 0.541401 0.114872 chr13-295 chr13 48301546 48301702 + 30.5 NA Intergenic Intergenic 28261 NM_031166 15904 Mm.458006 NM_031166 ENSMUSG00000021379 Id4 Idb4|bHLHb27 inhibitor of DNA binding 4 0.012821 0.484076 2.225304 chr15-222 chr15 8432397 8432553 + 30.5 NA Intergenic Intergenic -40797 NM_201232 71175 Mm.440537 NM_027707 ENSMUSG00000022141 Nipbl 4921518A06Rik|4933421G18Rik|C79399|Idn3 Nipped-B homolog (Drosophila) 0.019231 0.394904 -8.891341 chr1-763 chr1 169750299 169750455 + 30.5 NA Intergenic RMER15|LTR|ERVL 224145 NM_033652 110648 Mm.330081 NM_033652 ENSMUSG00000026686 Lmx1a Lmx1.1|MGC129356|MGC129357|dr|dreher|sst LIM homeobox transcription factor 1 alpha 0.019231 0.433121 -1.776831 chr9-502 chr9 95321230 95321386 + 30.5 NA promoter-TSS (NM_026476) promoter-TSS (NM_026476) 40 NM_026476 67958 Mm.392755 NM_001114977 ENSMUSG00000032407 2610101N10Rik AU023006|Sr140 RIKEN cDNA 2610101N10 gene 0.153846 0.687898 -4.500543 chr2-623 chr2 166140350 166140506 + 30.5 NA intron (NR_015558, intron 1 of 2) intron (NR_015558, intron 1 of 2) 1773 NR_015558 319684 Mm.399746 NR_015558 5031425F14Rik - RIKEN cDNA 5031425F14 gene 0.019231 0.573248 -3.895631 chr4-459 chr4 14949920 14950076 + 30.5 NA intron (NM_178617, intron 5 of 12) intron (NM_178617, intron 5 of 12) 126280 NM_178617 69352 Mm.389031 NM_178617 ENSMUSG00000040536 Necab1 1700003H21Rik|Efcbp1|STIP-1 N-terminal EF-hand calcium binding protein 1 0.012821 0.445860 -0.242944 chr18-220 chr18 11811476 11811632 + 30.5 NA intron (NM_001081223, intron 2 of 18) intron (NM_001081223, intron 2 of 18) 10177 NM_001081223 225182 Mm.154275 NM_001081223 ENSMUSG00000041238 Rbbp8 9930104E21Rik|CtIP retinoblastoma binding protein 8 0.000000 0.350318 -4.373725 chr13-296 chr13 49106713 49106869 + 30.5 NA intron (NM_029361, intron 5 of 27) intron (NM_029361, intron 5 of 27) 53160 NM_029361 75607 Mm.342723 NM_029361 ENSMUSG00000037989 Wnk2 1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760 WNK lysine deficient protein kinase 2 0.012821 0.573248 -2.603060 chr6-407 chr6 97608356 97608512 + 30.5 NA Intergenic RMER15|LTR|ERVL -25314 NM_145148 232288 Mm.27789 NM_145148 ENSMUSG00000030064 Frmd4b 6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013 FERM domain containing 4B 0.000000 0.407643 -3.103008 chr4-468 chr4 41137026 41137182 + 30.5 NA promoter-TSS (NM_001171739) promoter-TSS (NM_001171739) -119 NM_029814 76959 Mm.212763 NM_029814 ENSMUSG00000028419 Chmp5 2210412K09Rik|AW545668 chromatin modifying protein 5 0.064103 0.624204 -5.418998 chr7-351 chr7 100975262 100975418 + 30.5 NA Intergenic Intergenic -7521 NM_001146010 207278 Mm.263041 NM_001146010 ENSMUSG00000030691 Fchsd2 BC034086|R74866|Sh3md3|mKIAA0769 FCH and double SH3 domains 2 0.006410 0.515924 -4.233483 chr14-154 chr14 23012836 23012992 + 30.5 NA intron (NM_027726, intron 4 of 30) intron (NM_027726, intron 4 of 30) 65471 NM_001163513 71228 Mm.68971 XM_907765 ENSMUSG00000021782 Dlg5 4933429D20Rik|T25557|mKIAA0583 discs, large homolog 5 (Drosophila) 0.006410 0.375796 4.066006 chr4-573 chr4 148707489 148707645 + 30.5 NA Intergenic Intergenic -89500 NM_027460 70556 Mm.41877 NM_027460 ENSMUSG00000028982 Slc25a33 5730438N18Rik|MGC4399|Pnc1 solute carrier family 25, member 33 0.032051 0.484076 -5.484982 chr16-247 chr16 30092747 30092903 + 30.5 NA Intergenic Intergenic 94454 NM_027904 71756 Mm.290614 NM_027904 ENSMUSG00000023176 Cpn2 1300018K11Rik carboxypeptidase N, polypeptide 2 0.019231 0.566879 -1.321721 chr2-589 chr2 130896176 130896332 + 30.5 NA Intergenic Intergenic -5626 NM_027129 69596 Mm.2937 NM_027129 ENSMUSG00000068264 2310035K24Rik 0610038L13Rik|AW060727 RIKEN cDNA 2310035K24 gene 0.025641 0.592357 -0.837549 chr8-385 chr8 109891951 109892107 + 30.5 NA intron (NM_009229, intron 5 of 6) intron (NM_009229, intron 5 of 6) -28425 NM_126165 116733 Mm.236004 NM_126165 ENSMUSG00000031913 Vps4a 4930589C15Rik|AI325971|AW553189|MGC11698 vacuolar protein sorting 4a (yeast) 0.006410 0.426752 5.426697 chr5-598 chr5 53532250 53532406 + 30.5 NA Intergenic Intergenic -23025 NM_001145433 66278 Mm.442576 XM_913511 ENSMUSG00000061461 1810013D10Rik 1110067B18Rik|N28078 RIKEN cDNA 1810013D10 gene 0.019231 0.528662 2.062098 chr6-347 chr6 39194323 39194479 + 30.5 NA Intergenic Intergenic -58021 NM_001033430 338523 Mm.293175 NM_001033430 ENSMUSG00000042599 Jhdm1d A630082K20Rik|BB041802|ENSMUSG00000073143|mKIAA1718 jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae) 0.000000 0.535032 -5.091317 chr17-316 chr17 24743390 24743546 + 30.5 NA promoter-TSS (NM_134126) promoter-TSS (NM_134126) -217 NM_134126 106633 Mm.32802 XM_001475625 ENSMUSG00000024169 Ift140 AI661311|MGC170632|Tce5|Wdtc2|mKIAA0590 intraflagellar transport 140 homolog (Chlamydomonas) 0.141026 0.694268 -2.638722 chr4-494 chr4 83484344 83484500 + 30.5 NA Intergenic Intergenic 487647 NM_001081012 320226 Mm.180032 NM_001081012 ENSMUSG00000052407 4930473A06Rik 4930418J05Rik|A330015D16Rik RIKEN cDNA 4930473A06 gene 0.006410 0.464968 -3.334166 chr13-319 chr13 69541372 69541528 + 30.5 NA Intergenic L1MC|LINE|L1 -74537 NM_153534 210044 Mm.390617 NM_153534 ENSMUSG00000021536 Adcy2 MGC47193|mKIAA1060 adenylate cyclase 2 0.038462 0.414013 8.273591 chr7-302 chr7 18687661 18687817 + 30.5 NA Intergenic Intergenic 10487 NM_027116 69547 Mm.77325 XM_133219 ENSMUSG00000060621 Nkpd1 2310015G09Rik NTPase, KAP family P-loop domain containing 1 0.012821 0.503185 1.797658 chr12-415 chr12 37233212 37233368 + 30.5 NA Intergenic Intergenic 341506 NM_178629 75847 Mm.261764 NM_178629 Ispd 4930579E17Rik|AV040780 isoprenoid synthase domain containing 0.006410 0.331210 -4.829747 chr17-352 chr17 41928956 41929112 + 30.5 NA intron (NM_028474, intron 3 of 3) intron (NM_028474, intron 3 of 3) 145763 NM_181753 353344 Mm.184937 NM_181753 ENSMUSG00000043972 Opn5 Gpr136|Neuropsin|PGR12|TMEM13 opsin 5 0.000000 0.445860 -3.412087 chr1-640 chr1 66634001 66634157 + 30.5 NA promoter-TSS (NM_025683) promoter-TSS (NM_025683) -21 NM_025683 66646 Mm.240912 NM_025683 ENSMUSG00000026005 Rpe 2810429B02Rik|5730518J08Rik ribulose-5-phosphate-3-epimerase 0.108974 0.700637 0.455897 chr15-261 chr15 59241885 59242041 + 30.5 NA intron (NM_026746, intron 2 of 6) intron (NM_026746, intron 2 of 6) 38085 NM_001164604 68501 Mm.27762 NM_001164604 ENSMUSG00000059586 Nsmce2 1110014D18Rik|AI661537 non-SMC element 2 homolog (MMS21, S. cerevisiae) 0.006410 0.433121 -4.981369 chr17-336 chr17 30858374 30858530 + 30.5 NA Intergenic Intergenic -1829 NM_011575 21786 Mm.4641 NM_011575 ENSMUSG00000024029 Tff3 ITF|mITF trefoil factor 3, intestinal 0.019231 0.535032 -3.143885 chr11-501 chr11 41270714 41270870 + 30.5 NA Intergenic Intergenic 572950 NM_177408 14406 Mm.5309 NM_008073 ENSMUSG00000020436 Gabrg2 AI851231|BB128510|GABAA-R|Gabrg-2|gamma2 gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 0.019231 0.445860 -5.147663 chr2-562 chr2 93811619 93811775 + 30.5 NA promoter-TSS (NM_026944) promoter-TSS (NM_026944) -128 NM_026944 69113 Mm.272498 NM_026944 ENSMUSG00000040174 Alkbh3 1700108H04Rik|1810020C19Rik|Abh3|mABH3 alkB, alkylation repair homolog 3 (E. coli) 0.076923 0.617834 -4.317318 chr19-133 chr19 3850885 3851041 + 30.5 NA promoter-TSS (NM_013490) promoter-TSS (NM_013490) -809 NM_001025566 12660 Mm.225505 NM_001025566 ENSMUSG00000024843 Chka Chetk-alpha|Chk|ChoK|EtnK-alpha choline kinase alpha 0.032051 0.573248 -5.959633 chr18-235 chr18 36053064 36053220 + 30.5 NA Intergenic Intergenic -37666 NM_028707 74002 Mm.196944 NM_028707 ENSMUSG00000024347 Psd2 6330404E20Rik|AW125584|EFA6C pleckstrin and Sec7 domain containing 2 0.000000 0.496815 -3.944591 chr12-515 chr12 118299212 118299368 + 30.5 NA intron (NM_146040, intron 1 of 9) intron (NM_146040, intron 1 of 9) 13421 NM_146040 217946 Mm.281149 NM_146040 ENSMUSG00000021175 Cdca7l BC006933|JPO2|MGC11998 cell division cycle associated 7 like 0.025641 0.458599 -2.561949 chr14-153 chr14 22573385 22573541 + 30.5 NA intron (NM_010610, intron 2 of 28) intron (NM_010610, intron 2 of 28) 219294 NM_010610 16531 Mm.458374 NM_010610 ENSMUSG00000063142 Kcnma1 5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 0.006410 0.388535 1.073378 chr19-161 chr19 29486061 29486217 + 30.5 NA intron (NM_021396, intron 1 of 5) intron (NM_021396, intron 1 of 5) 9224 NM_021396 58205 Mm.116737 NM_021396 ENSMUSG00000016498 Pdcd1lg2 B7-DC|Btdc|F730015O22Rik|MGC124039|MGC124040|PD-L2 programmed cell death 1 ligand 2 0.000000 0.445860 -1.842365 chr2-527 chr2 65347584 65347740 + 30.5 NA intron (NM_018732, intron 1 of 26) intron (NM_018732, intron 1 of 26) 20669 NM_018732 20269 Mm.330256 NM_018732 ENSMUSG00000057182 Scn3a Gm1000|Nav1.3 sodium channel, voltage-gated, type III, alpha 0.019231 0.407643 -7.974578 chr10-336 chr10 25617870 25618026 + 30.5 NA Intergenic Intergenic -149722 NR_028030 100040851 Mm.478630 XM_001475247 ENSMUSG00000039098 Gm9767 ENSMUSG00000039098 predicted gene 9767 0.012821 0.452229 1.945818 chr18-251 chr18 54945867 54946023 + 30.5 NA Intergenic MIRb|SINE|MIR 169604 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.019231 0.452229 10.947416 chr9-463 chr9 58779810 58779966 + 30.5 NA intron (NM_008684, intron 4 of 28) intron (NM_008684, intron 4 of 28) 54690 NM_008684 18007 Mm.461831 NM_001042752 ENSMUSG00000032340 Neo1 2610028H22Rik|AI327052|D930014N22Rik|Igdcc2 neogenin 0.012821 0.414013 -4.458825 chr6-392 chr6 88896932 88897088 + 30.5 NA Intergenic Intergenic 29119 NM_011906 24100 Mm.284480 NM_011906 ENSMUSG00000002871 Tpra1 40kDa|Gpr175|Tpra40 transmembrane protein, adipocyte asscociated 1 0.012821 0.522293 1.396429 chr3-404 chr3 100492345 100492501 + 30.5 NA Intergenic Intergenic 125830 NM_001142952 74645 Mm.226900 NM_001142952 Fam46c 4930431B09Rik|AI449797 family with sequence similarity 46, member C 0.006410 0.401274 -6.124273 chr11-620 chr11 117325188 117325344 + 30.5 NA Intergenic MER58A|DNA|MER1_type -102070 NR_015489 78403 Mm.212543 NR_015489 2900041M22Rik - RIKEN cDNA 2900041M22 gene 0.006410 0.477707 0.394726 chr6-382 chr6 83704287 83704443 + 30.5 NA TTS (NM_011912) TTS (NM_011912) -4309 NM_134157 110935 Mm.220823 NM_134157 ENSMUSG00000006269 Atp6v1b1 AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3 ATPase, H+ transporting, lysosomal V1 subunit B1 0.032051 0.439490 -4.880674 chr2-513 chr2 52706746 52706902 + 30.5 NA intron (NM_172409, intron 1 of 26) intron (NM_172409, intron 1 of 26) 26948 NM_172409 71409 Mm.394427 NM_172409 ENSMUSG00000036053 Fmnl2 5430425K04Rik|Man formin-like 2 0.006410 0.452229 -5.681175 chr13-344 chr13 110997030 110997186 + 30.5 NA intron (NM_011056, intron 7 of 16) intron (NM_011056, intron 7 of 16) -27578 NR_035442 100316683 NR_035442 Mir1904 mmu-mir-1904 microRNA mir-1904 0.006410 0.318471 -4.746119 chr3-453 chr3 142702496 142702652 + 30.5 NA promoter-TSS (NM_145546) promoter-TSS (NM_145546) -58 NM_145546 229906 Mm.271756 NM_145546 ENSMUSG00000028271 Gtf2b MGC6859 general transcription factor IIB 0.147436 0.687898 -3.670620 chr2-491 chr2 32649418 32649574 + 30.5 NA intron (NM_001113569, intron 1 of 19) intron (NM_001113569, intron 1 of 19) 19745 NM_009295 20910 Mm.278865 NM_001113569 ENSMUSG00000026797 Stxbp1 AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1 syntaxin binding protein 1 0.012821 0.439490 -5.909683 chr2-511 chr2 51296786 51296942 + 30.5 NA Intergenic B3|SINE|B2 -152655 NM_199158 387511 Mm.377918 NM_199158 ENSMUSG00000056115 Tas2r134 T2R134|Tas2r34 taste receptor, type 2, member 134 0.000000 0.426752 -1.143137 chr5-688 chr5 132532654 132532810 + 30.5 NA intron (NM_177047, intron 2 of 18) intron (NM_177047, intron 2 of 18) 294314 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.012821 0.515924 -5.184206 chr3-388 chr3 69886985 69887141 + 30.5 NA Intergenic Intergenic 60762 NM_001164210 66183 Mm.45481 NM_001164210 ENSMUSG00000043461 1110032A04Rik ADMP|Sssptb RIKEN cDNA 1110032A04 gene 0.000000 0.394904 -3.695790 chr8-412 chr8 127696971 127697127 + 30.5 NA intron (NM_198632, intron 1 of 9) intron (NM_198632, intron 1 of 9) 17941 NM_198632 330863 Mm.422769 XM_001480316 ENSMUSG00000036913 Trim67 D130049O21Rik|TNL tripartite motif-containing 67 0.012821 0.439490 4.569630 chr15-304 chr15 101611804 101611960 + 30.5 NA intron (NM_213728, intron 2 of 8) intron (NM_213728, intron 2 of 8) 2610 NM_213728 105866 Mm.298210 NM_213728 ENSMUSG00000056605 Krt72-ps AI507495|K6irs2|Krt2-35|Krt72 keratin 72, pseudogene 0.025641 0.464968 -1.160810 chr9-481 chr9 67064208 67064364 + 30.5 NA intron (NM_001081242, intron 45 of 57) intron (NM_001081242, intron 45 of 57) -28416 NR_029576 387185 NR_029576 Mir190 Mirn190|mir-190|mmu-mir-190 microRNA 190 0.000000 0.554140 2.294781 chr4-478 chr4 59803482 59803638 + 30.5 NA intron (NM_001015681, intron 2 of 3) intron (NM_001015681, intron 2 of 3) 74349 NM_001013577 66209 Mm.443220 NM_001013577 ENSMUSG00000038544 1110054O05Rik 2610312O17Rik|AA399876|Ssbip1 RIKEN cDNA 1110054O05 gene 0.012821 0.503185 -0.215356 chr14-161 chr14 45468056 45468212 + 30.5 NA Intergenic Intergenic -155658 NM_007554 12159 Mm.6813 NM_007554 ENSMUSG00000021835 Bmp4 Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1 bone morphogenetic protein 4 0.019231 0.477707 -6.779490 chr18-234 chr18 35986198 35986354 + 30.5 NA intron (NM_133687, intron 2 of 2) intron (NM_133687, intron 2 of 2) 30485 NM_133687 67393 Mm.94560 NM_133687 ENSMUSG00000046668 Cxxc5 4930415K17Rik|MGC101987 CXXC finger 5 0.019231 0.592357 1.336189 chr7-325 chr7 64233715 64233871 + 30.5 NA intron (NM_177893, intron 8 of 13) intron (NM_177893, intron 8 of 13) 19252 NM_177893 330554 Mm.236510 XM_001476623 Fan1 6030441H18Rik|Mtmr15 FANCD2/FANCI-associated nuclease 1 0.006410 0.452229 -1.911312 chr3-360 chr3 21517218 21517374 + 30.5 NA Intergenic Intergenic -750428 NM_030732 81004 Mm.446265 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 transducin (beta)-like 1X-linked receptor 1 0.019231 0.407643 -5.419765 chr2-573 chr2 116823536 116823692 + 30.5 NA intron (NM_033524, intron 1 of 6) intron (NM_033524, intron 1 of 6) 10724 NM_033524 114715 Mm.397626 NM_033524 ENSMUSG00000027351 Spred1 5730461F13Rik|AL024345|AW047647 sprouty protein with EVH-1 domain 1, related sequence 0.000000 0.343949 1.179223 chr4-506 chr4 98169553 98169709 + 30.5 NA intron (NM_001005787, intron 12 of 15) intron (NM_001005787, intron 12 of 15) -49140 NM_001081202 381591 Mm.34340 NM_001081202 L1td1 AA546746|AB211064|D76865|ECAT11 LINE-1 type transposase domain containing 1 0.032051 0.382166 -5.548950 chr4-455 chr4 9172825 9172981 + 30.5 NA Intergenic Intergenic -23560 NM_028940 74438 Mm.477282 NM_028940 ENSMUSG00000041216 Clvs1 4933402J24Rik|Clvl1|Rlbp1l1 clavesin 1 0.012821 0.433121 -4.853086 chr2-582 chr2 122526574 122526730 + 30.5 NA Intergenic Intergenic 53213 NM_021507 59010 Mm.28986 NM_001162503 ENSMUSG00000005803 Sqrdl 0610039J17Rik|4930557M22Rik sulfide quinone reductase-like (yeast) 0.000000 0.433121 -2.294811 chr11-579 chr11 98262963 98263119 + 30.5 NA 5' UTR (NM_010346, exon 1 of 15) 5' UTR (NM_010346, exon 1 of 15) 118 NM_010346 14786 Mm.276702 NM_010346 ENSMUSG00000019312 Grb7 KIAA4028|MGC78181|mKIAA4028 growth factor receptor bound protein 7 0.032051 0.617834 -2.901263 chr7-317 chr7 45302769 45302925 + 30.5 NA promoter-TSS (NM_011304) promoter-TSS (NM_011304) -33 NM_030678 14936 Mm.275654 NM_030678 ENSMUSG00000003865 Gys1 Gys3|MGS glycogen synthase 1, muscle 0.064103 0.630573 -4.703070 chr10-334 chr10 21684060 21684216 + 30.5 NA promoter-TSS (NM_011361) promoter-TSS (NM_011361) 57 NM_011361 20393 Mm.28405 NM_001161845 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 0.089744 0.605096 -3.234485 chr3-397 chr3 89985164 89985320 + 30.5 NA intron (NM_010559, intron 1 of 9) intron (NM_010559, intron 1 of 9) 13847 NM_010559 16194 Mm.2856 NM_010559 ENSMUSG00000027947 Il6ra CD126|IL-6R|Il6r|MGC30256 interleukin 6 receptor, alpha 0.006410 0.464968 -3.323809 chr1-694 chr1 108035837 108035993 + 30.5 NA intron (NM_133821, intron 1 of 16) intron (NM_133821, intron 1 of 16) 36500 NM_133821 98432 Mm.24115 XM_001475839 ENSMUSG00000044340 Phlpp1 AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606 PH domain and leucine rich repeat protein phosphatase 1 0.025641 0.471338 5.070406 chr4-517 chr4 103744633 103744789 + 30.5 NA Intergenic Intergenic -120780 NM_010014 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled homolog 1 (Drosophila) 0.000000 0.490446 -0.077211 chr12-505 chr12 112040614 112040770 + 30.5 NA intron (NM_022801, intron 2 of 15) intron (NM_022801, intron 2 of 15) 18375 NM_022801 17169 Mm.420865 NM_021516 ENSMUSG00000007411 Mark3 1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|KIAA4230|MPK10 MAP/microtubule affinity-regulating kinase 3 0.012821 0.375796 -3.347149 chr4-529 chr4 109466547 109466703 + 30.5 NA Intergenic L2|LINE|L2 -9331 NM_172296 242620 Mm.32825 NM_172296 ENSMUSG00000047143 Dmrta2 Dmrt5 doublesex and mab-3 related transcription factor like family A2 0.006410 0.464968 -4.234158 chr18-231 chr18 24972564 24972720 + 30.5 NA intron (NM_175276, intron 3 of 26) intron (NM_175276, intron 3 of 26) 120188 NM_175276 225288 Mm.329322 NM_175276 ENSMUSG00000034295 Fhod3 A930009H06Rik|FHOS2|KIAA1695|mKIAA1695 formin homology 2 domain containing 3 0.012821 0.535032 2.614694 chr9-420 chr9 22573376 22573532 + 30.5 NA intron (NM_178415, intron 21 of 22) intron (NM_178415, intron 21 of 22) 347338 NM_178415 319845 Mm.176725 NM_178415 ENSMUSG00000035919 Bbs9 E130103I17Rik Bardet-Biedl syndrome 9 (human) 0.025641 0.477707 0.568632 chr2-593 chr2 135482556 135482712 + 30.5 NA intron (NM_013829, intron 1 of 36) intron (NM_013829, intron 1 of 36) 49364 NM_013829 18798 Mm.38009 NM_013829 ENSMUSG00000039943 Plcb4 A930039J07Rik|AI854601|C230058B11Rik phospholipase C, beta 4 0.006410 0.337580 -0.381651 chr18-219 chr18 9674120 9674276 + 30.5 NA Intergenic Intergenic -33447 NM_130449 140792 Mm.218571 NM_130449 ENSMUSG00000036103 Colec12 CL-P1|SRCL|Scara4 collectin sub-family member 12 0.000000 0.439490 -4.454404 chr19-147 chr19 10356819 10356975 + 30.5 NA intron (NM_198114, intron 1 of 19) intron (NM_198114, intron 1 of 19) 15025 NM_198114 269060 Mm.329718 NM_198114 ENSMUSG00000035735 Dagla KIAA0659|Nsddr diacylglycerol lipase, alpha 0.006410 0.560510 -1.699619 chr7-341 chr7 83080163 83080319 + 30.5 NA Intergenic Intergenic 336724 NM_175366 108797 Mm.306789 XM_620516 Mex3b 4931439A04Rik|M-04814|Rkhd3|mKIAA2009 mex3 homolog B (C. elegans) 0.000000 0.484076 -3.878121 chr17-300 chr17 9731542 9731698 + 30.5 NA Intergenic Intergenic -218559 NM_001163836 67543 Mm.26987 NM_001163836 Pabpc6 4932702K14Rik|AI428050|MGC132900|Pabpc3 poly(A) binding protein, cytoplasmic 6 0.006410 0.560510 -4.576199 chr1-731 chr1 157084107 157084263 + 30.5 NA intron (NM_011273, intron 7 of 14) intron (NM_011273, intron 7 of 14) 95477 NM_011273 19775 Mm.266215 NM_011273 ENSMUSG00000026469 Xpr1 Rmc-1|Rmc1|Sxv|Syg1|XR xenotropic and polytropic retrovirus receptor 1 0.012821 0.420382 -4.951849 chr5-584 chr5 36493396 36493552 + 30.5 NA intron (NM_030889, intron 2 of 26) intron (NM_030889, intron 2 of 26) -27407 NM_175249 76943 Mm.44242 NM_175249 ENSMUSG00000043430 Psapl1 2310020A21Rik prosaposin-like 1 0.032051 0.573248 -2.762800 chr2-600 chr2 145725092 145725248 + 30.5 NA Intergenic MER45C|DNA|Tip100 98946 NM_175280 78774 Mm.451992 NM_175280 ENSMUSG00000037143 4930529M08Rik BB178539|BC024760|MGC129508|MGC129509|MGC58680 RIKEN cDNA 4930529M08 gene 0.025641 0.541401 -6.535979 chr15-279 chr15 81074913 81075069 + 30.5 NA Intergenic Intergenic 12238 NM_145132 207911 Mm.323523 NM_145132 Mchr1 AW049955|Gpr24|Mch1r melanin-concentrating hormone receptor 1 0.019231 0.471338 -2.180815 chr5-712 chr5 139727709 139727865 + 30.5 NA intron (NM_133349, intron 5 of 6) intron (NM_133349, intron 5 of 6) 10346 NM_133349 100494 Mm.24521 NM_001159908 ENSMUSG00000053581 Zfand2a AA407930|AU016206|Airap zinc finger, AN1-type domain 2A 0.038462 0.579618 -5.612776 chr10-413 chr10 96120617 96120773 + 30.5 NA intron (NR_030554, intron 1 of 3) intron (NR_030554, intron 1 of 3) 8899 NR_030554 100124472 NR_030554 Mir297a-6 Mirn297a-6 microRNA 297a-6 0.000000 0.464968 -1.928760 chr4-524 chr4 106785655 106785811 + 30.5 NA Intergenic Intergenic 19342 NM_007860 13370 Mm.148342 NM_007860 ENSMUSG00000034785 Dio1 5DI|D1|ITDI1|MGC107659|TXDI1 deiodinase, iodothyronine, type I 0.012821 0.426752 0.497530 chr19-139 chr19 6141187 6141343 + 30.5 NA promoter-TSS (NM_019722) promoter-TSS (NM_019722) -128 NM_019722 56327 Mm.21071 NM_019722 ENSMUSG00000024944 Arl2 2610009M23Rik|AI115441|AW553335 ADP-ribosylation factor-like 2 0.083333 0.649682 -4.339939 chr4-513 chr4 100940874 100941030 + 30.5 NA intron (NM_001177605, intron 2 of 5) intron (NM_001177605, intron 2 of 5) 23318 NM_009647 11639 Mm.42040 NM_001177602 ENSMUSG00000028527 Ak4 Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e adenylate kinase 4 0.006410 0.471338 1.845888 chr12-442 chr12 74042474 74042630 + 30.5 NA promoter-TSS (NM_008612) promoter-TSS (NM_008612) -2 NM_008612 17420 Mm.246750 NM_008612 ENSMUSG00000021103 Mnat1 E130115E11Rik|MAT1|P36 menage a trois 1 0.064103 0.585987 -4.609970 chr3-409 chr3 101928345 101928501 + 30.5 NA Intergenic MIRb|SINE|MIR 36861 NM_172295 242125 Mm.32900 NM_172295 ENSMUSG00000044313 BC037703 MGC47256 cDNA sequence BC037703 0.000000 0.477707 -3.812366 chr15-273 chr15 76178465 76178621 + 30.5 NA promoter-TSS (NM_001164607) promoter-TSS (NM_001164607) -5 NM_001164607 68877 Mm.289680 NM_001164607 ENSMUSG00000022553 Maf1 1110068E11Rik|AU042856 MAF1 homolog (S. cerevisiae) 0.064103 0.592357 -7.147694 chr11-555 chr11 86197599 86197755 + 30.5 NA Intergenic Intergenic -23957 NM_001080931 327987 Mm.341886 NM_001080931 ENSMUSG00000034297 Med13 1110067M05Rik|D030023K18|Thrap1|Trap240 mediator complex subunit 13 0.012821 0.471338 -4.796524 chr5-656 chr5 112514137 112514293 + 30.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -2794 NM_009419 22022 Mm.250631 NM_009419 ENSMUSG00000029344 Tpst2 AI448750|D5Ucla3|grm|grt protein-tyrosine sulfotransferase 2 0.000000 0.477707 4.797765 chr4-578 chr4 150354258 150354414 + 30.5 NA intron (NM_001166021, intron 3 of 22) intron (NM_001166021, intron 3 of 22) 351221 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.012821 0.484076 -4.167644 chr1-789 chr1 189332403 189332559 + 30.5 NA Intergenic MLT1G3|LTR|MaLR -366165 NM_011935 26381 Mm.388156 NM_011935 ENSMUSG00000026610 Esrrg ERR3|Errg|NR3B3|mKIAA0832 estrogen-related receptor gamma 0.000000 0.528662 -4.513436 chr13-337 chr13 102303856 102304012 + 30.5 NA Intergenic Intergenic -370250 NM_022885 69048 Mm.402215 NM_022885 ENSMUSG00000021629 Slc30a5 1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1 solute carrier family 30 (zinc transporter), member 5 0.000000 0.401274 -4.968549 chr1-777 chr1 182748521 182748677 + 30.5 NA Intergenic ORR1C2|LTR|MaLR 7651 NM_133705 69051 Mm.274180 NM_133705 ENSMUSG00000026520 Pycr2 1810018M05Rik|Leftb|P5cr2 pyrroline-5-carboxylate reductase family, member 2 0.038462 0.484076 -1.378201 chr14-149 chr14 18956246 18956402 + 30.5 NA intron (NM_021542, intron 1 of 4) intron (NM_021542, intron 1 of 4) 16154 NM_021542 16529 Mm.68998 NM_021542 ENSMUSG00000023243 Kcnk5 TASK-2 potassium channel, subfamily K, member 5 0.000000 0.535032 -5.713723 chr8-375 chr8 89365905 89366061 + 30.5 NA Intergenic Intergenic 90712 NM_172912 244562 Mm.67485 NM_172912 ENSMUSG00000036872 Abcc12 4930467B22Rik|MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 0.019231 0.496815 -5.208891 chr11-593 chr11 103051850 103052006 + 30.5 NA intron (NM_016896, intron 6 of 15) intron (NM_016896, intron 6 of 15) -17406 NM_177801 328019 Mm.189646 NM_177801 ENSMUSG00000044787 4933400C05Rik VAD1.2 RIKEN cDNA 4933400C05 gene 0.019231 0.560510 -9.714162 chr13-328 chr13 93624180 93624336 + 30.5 NA intron (NM_173392, intron 2 of 17) intron (NM_173392, intron 2 of 17) 7305 NM_173392 218441 Mm.259585 NM_173392 ENSMUSG00000021706 Zfyve16 AI035632|B130024H06Rik|B130031L15|mKIAA0305 zinc finger, FYVE domain containing 16 0.006410 0.439490 -3.909235 chr11-589 chr11 101946150 101946306 + 30.5 NA Intergenic Intergenic -15448 NM_145829 217214 Mm.31686 NM_145829 ENSMUSG00000048217 Nags 1700120E20Rik|AI415708|RP23-398F7.13|argA N-acetylglutamate synthase 0.044872 0.605096 0.891694 chr10-428 chr10 126183152 126183308 + 30.5 NA Intergenic Intergenic 121090 NM_026858 68876 Mm.276769 NM_001159559 ENSMUSG00000025436 Xrcc6bp1 1110068E08Rik|2410012H02Rik XRCC6 binding protein 1 0.012821 0.490446 -3.150049 chr1-583 chr1 10366193 10366349 + 30.5 NA intron (NM_177834, intron 8 of 10) intron (NM_177834, intron 8 of 10) -148387 NM_001102430 211673 Mm.229141 XM_001473166 ENSMUSG00000067851 Arfgef1 ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) 0.000000 0.375796 -0.893383 chr4-586 chr4 151839170 151839326 + 30.5 NA Intergenic Intergenic 297909 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.019231 0.522293 -3.151978 chr5-617 chr5 75741212 75741368 + 30.5 NA Intergenic Intergenic -115393 NM_001122733 16590 Mm.247073 NM_001122733 ENSMUSG00000005672 Kit Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT kit oncogene 0.012821 0.414013 -3.054684 chr15-233 chr15 30836642 30836798 + 30.5 NA intron (NM_008729, intron 14 of 22) intron (NM_008729, intron 14 of 22) -332253 NM_146057 223453 Mm.222867 NM_146057 ENSMUSG00000039168 Dap 4921531N22Rik|AI789753|AU040360|MGC19154|MGC6998 death-associated protein 0.019231 0.477707 -1.511276 chr15-301 chr15 99940564 99940720 + 30.5 NA intron (NM_001159361, intron 1 of 37) intron (NM_001159361, intron 1 of 37) -41787 NM_172819 239667 Mm.243658 NM_001159361 ENSMUSG00000023026 Dip2b 4932422C22|AI317237|AI854602|KIAA1463|mKIAA1463 DIP2 disco-interacting protein 2 homolog B (Drosophila) 0.012821 0.439490 4.159689 chr2-506 chr2 48689954 48690110 + 30.5 NA intron (NM_007396, intron 1 of 10) intron (NM_007396, intron 1 of 10) 53915 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA 0.000000 0.503185 -5.050845 chr9-497 chr9 86263737 86263767 + 30.5 NA promoter-TSS (NM_177208) promoter-TSS (NM_177208) -119 NM_177208 320615 Mm.436359 NM_177208 Dopey1 B130005I07Rik|BC035275|C130028L17|D9Ertd809e|KIAA1117|MGC49390 dopey family member 1 0.033333 0.516129 -11.067609 chr3-434 chr3 121993640 121993796 + 30.5 NA intron (NM_172525, intron 12 of 22) intron (NM_172525, intron 12 of 22) -42763 NM_007378 11304 Mm.3918 NM_007378 ENSMUSG00000028125 Abca4 AW050280|Abc10|Abcr|D430003I15Rik|RmP ATP-binding cassette, sub-family A (ABC1), member 4 0.012821 0.515924 -0.865871 chr11-566 chr11 94445706 94445862 + 30.5 NA promoter-TSS (NM_133807) promoter-TSS (NM_133807) -129 NM_133807 98238 Mm.172720 NM_133807 ENSMUSG00000020869 Lrrc59 AA959742|C78668 leucine rich repeat containing 59 0.096154 0.700637 -3.995518 chr1-795 chr1 192148938 192149094 + 30.5 NA Intergenic Intergenic -277548 NM_008937 19130 Mm.392678 NM_008937 ENSMUSG00000010175 Prox1 A230003G05Rik prospero-related homeobox 1 0.038462 0.592357 -7.899004 chr6-331 chr6 8287383 8287539 + 30.5 NA intron (NR_033518, intron 2 of 3) intron (NR_033518, intron 2 of 3) 78174 NR_033518 100036521 Mm.458518 XM_001474303 ENSMUSG00000089862 Gm16039 OTTMUSG00000029336 predicted gene 16039 0.000000 0.407643 3.098866 chr19-155 chr19 25410739 25410895 + 30.5 NA intron (NM_181404, intron 3 of 13) intron (NM_181404, intron 3 of 13) 106519 NM_181404 107351 Mm.260722 NM_181404 ENSMUSG00000032702 Kank1 A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|MGC90826|mKIAA0172 KN motif and ankyrin repeat domains 1 0.012821 0.464968 -0.699528 chr2-471 chr2 25111740 25111896 + 30.5 NA promoter-TSS (NM_146117) promoter-TSS (NM_146117) -101 NM_146117 227618 Mm.275228 NM_146117 ENSMUSG00000026961 Lrrc26 MGC37548|MGC37592|MGC6965|RP23-132N23.19 leucine rich repeat containing 26 0.012821 0.566879 -8.637945 chr5-595 chr5 53121876 53122032 + 30.5 NA promoter-TSS (NM_024213) promoter-TSS (NM_024213) -428 NM_024213 52206 Mm.272568 NM_024213 ENSMUSG00000029176 Anapc4 2610306D21Rik|APC4|D5Ertd249e anaphase promoting complex subunit 4 0.032051 0.490446 -5.243870 chr5-727 chr5 143633235 143633391 + 30.5 NA intron (NM_133355, intron 1 of 20) intron (NM_133355, intron 1 of 20) 4266 NM_133355 170935 Mm.197460 NM_001159321 ENSMUSG00000010825 Grid2ip - glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 0.000000 0.490446 0.306360 chr19-181 chr19 56927123 56927279 + 30.5 NA promoter-TSS (NM_172840) promoter-TSS (NM_172840) -464 NM_172840 240675 Mm.129534 NM_172840 ENSMUSG00000025082 Vwa2 Amaco von Willebrand factor A domain containing 2 0.025641 0.445860 -5.174945 chr5-626 chr5 84037122 84037278 + 30.5 NA Intergenic Intergenic -163574 NR_035415 100316803 NR_035415 Mir1187 mmu-mir-1187 microRNA mir-1187 0.000000 0.477707 -1.287415 chr15-226 chr15 25577799 25577955 + 30.5 NA intron (NM_019472, intron 1 of 40) intron (NM_019472, intron 1 of 40) 10603 NM_019472 17909 Mm.60590 NM_019472 ENSMUSG00000022272 Myo10 AW048724|D15Ertd600e|mKIAA0799 myosin X 0.012821 0.592357 -2.065589 chr1-758 chr1 166878768 166878924 + 30.5 NA Intergenic Intergenic -106661 NM_008510 16963 Mm.190 NM_008510 ENSMUSG00000026573 Xcl1 AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1 chemokine (C motif) ligand 1 0.000000 0.464968 -3.964445 chr15-239 chr15 35021417 35021573 + 30.5 NA intron (NM_019635, intron 4 of 10) intron (NM_019635, intron 4 of 10) 78900 NM_019635 56274 Mm.262330 NM_019635 ENSMUSG00000022329 Stk3 0610042I06Rik|MST|Mst2|Mst3|mess1 serine/threonine kinase 3 (Ste20, yeast homolog) 0.000000 0.433121 -6.648231 chr12-447 chr12 79929283 79929439 + 30.5 NA Intergenic MIR|SINE|MIR -3244 NM_178745 268567 Mm.341747 NM_001170401 ENSMUSG00000046157 Tmem229b 6330442E10Rik|9830138K24|AU019070 transmembrane protein 229B 0.019231 0.401274 0.068423 chr18-223 chr18 12962873 12963029 + 30.5 NA intron (NM_207530, intron 16 of 27) intron (NM_207530, intron 16 of 27) 78428 NM_027687 71132 Mm.179740 NM_001042418 ENSMUSG00000024430 Cabyr 1700016C01Rik|4933421A18Rik|CBP86|FSP-2|MGC130217|MGC130218 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 0.032051 0.496815 -3.845236 chr9-540 chr9 121572816 121572972 + 30.5 NA intron (NM_010918, intron 2 of 16) intron (NM_010918, intron 2 of 16) 5016 NM_010918 18087 Mm.441099 NM_010918 ENSMUSG00000032525 Nktr 5330401F18Rik|D9Wsu172e natural killer tumor recognition sequence 0.006410 0.369427 -5.180816 chrX-54 chrX 36626117 36626273 + 30.5 NA Intergenic Intergenic -517964 NM_001191032 664704 Mm.373409 NM_001191032 Cypt14 - cysteine-rich perinuclear theca 14 0.019231 0.394904 -7.643794 chr4-544 chr4 123139662 123139818 + 30.5 NA intron (NM_009600, intron 1 of 92) intron (NM_009600, intron 1 of 92) 46923 NM_009600 11426 Mm.477352 XM_001472676 ENSMUSG00000028649 Macf1 ABP620|Acf7|Aclp7|MACF|R74989|mACF7|mKIAA0465 microtubule-actin crosslinking factor 1 0.019231 0.503185 2.809974 chr8-419 chr8 128964724 128964880 + 30.5 NA Intergenic Intergenic 83611 NM_008430 16525 Mm.10800 NM_008430 ENSMUSG00000033998 Kcnk1 AI788889|TWIK-1 potassium channel, subfamily K, member 1 0.012821 0.426752 3.558890 chr16-264 chr16 44045882 44046038 + 30.5 NA intron (NM_007508, intron 1 of 14) intron (NM_007508, intron 1 of 14) 12391 NM_007508 11964 Mm.217787 NM_007508 ENSMUSG00000052459 Atp6v1a AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2 ATPase, H+ transporting, lysosomal V1 subunit A 0.012821 0.433121 0.913911 chr17-365 chr17 49675693 49675849 + 30.5 NA Intergenic Intergenic -19707 NM_181397 76438 Mm.41854 NM_181397 ENSMUSG00000039316 Rftn1 2310015N21Rik|AI853526 raftlin lipid raft linker 1 0.006410 0.484076 -5.564569 chr3-422 chr3 116411863 116412019 + 30.5 NA intron (NM_001173553, intron 2 of 13) intron (NM_001173553, intron 2 of 13) 4095 NM_001080818 229776 Mm.17647 NM_001080818 ENSMUSG00000033502 Cdc14a A830059A17Rik|CDC14A2|CDC14a1|Cdc14 CDC14 cell division cycle 14 homolog A (S. cerevisiae) 0.019231 0.522293 -3.582630 chr15-298 chr15 96098675 96098831 + 30.5 NA 3' UTR (NR_030690, exon 1 of 1) 3' UTR (NR_030690, exon 1 of 1) 4556 NR_030690 319722 Mm.394310 NR_030690 E330033B04Rik - RIKEN cDNA E330033B04 gene 0.006410 0.528662 -4.655275 chr11-505 chr11 52176294 52176450 + 30.5 NA Intergenic Intergenic -28165 NM_011694 22333 Mm.470023 NM_011694 ENSMUSG00000020402 Vdac1 AL033343|Vdac5 voltage-dependent anion channel 1 0.032051 0.535032 0.868147 chr2-616 chr2 163852742 163852898 + 30.5 NA Intergenic MLT1C|LTR|MaLR 9734 NM_008435 16538 Mm.6217 NM_008435 ENSMUSG00000040164 Kcns1 Kv9.1 K+ voltage-gated channel, subfamily S, 1 0.006410 0.490446 -4.701768 chr3-464 chr3 154504746 154504902 + 30.5 NA Intergenic Intergenic -27480 NM_009968 12972 Mm.374855 NM_009968 ENSMUSG00000028199 Cryz Sez9 crystallin, zeta 0.012821 0.305732 1.803050 chr17-299 chr17 9684722 9684878 + 30.5 NA Intergenic Intergenic -171739 NM_001163836 67543 Mm.26987 NM_001163836 Pabpc6 4932702K14Rik|AI428050|MGC132900|Pabpc3 poly(A) binding protein, cytoplasmic 6 0.000000 0.490446 -5.498191 chr9-428 chr9 35109540 35109696 + 30.5 NA Intergenic Intergenic 92067 NM_028040 71989 Mm.273515 NM_028040 ENSMUSG00000032044 Rpusd4 2410001E19Rik RNA pseudouridylate synthase domain containing 4 0.012821 0.484076 -2.001954 chr1-720 chr1 137010494 137010650 + 30.5 NA Intergenic PB1D10|SINE|Alu -26480 NM_134438 171469 Mm.272290 NM_134438 ENSMUSG00000026424 Gpr37l1 AW047233|CAG-18|D0Kist8 G protein-coupled receptor 37-like 1 0.000000 0.439490 -3.072854 chr5-732 chr5 148205065 148205221 + 30.5 NA promoter-TSS (NM_027872) promoter-TSS (NM_027872) 8 NM_027872 71706 Mm.153218 NM_027872 ENSMUSG00000029650 Slc46a3 1200006F02Rik solute carrier family 46, member 3 0.083333 0.656051 -6.710152 chr17-341 chr17 31742107 31742263 + 30.5 NA intron (NM_028902, intron 4 of 7) intron (NM_028902, intron 4 of 7) 21426 NM_028902 74377 Mm.75856 XM_484622 ENSMUSG00000002076 Hsf2bp 4932437G14Rik heat shock transcription factor 2 binding protein 0.012821 0.528662 -8.221124 chr10-388 chr10 84299303 84299459 + 30.5 NA intron (NM_001024918, intron 13 of 17) intron (NM_001024918, intron 13 of 17) 31435 NM_027689 71137 Mm.79070 NM_001024918 ENSMUSG00000020037 Rfx4 4933412G19Rik|NYD-sp10 regulatory factor X, 4 (influences HLA class II expression) 0.000000 0.484076 2.287221 chr5-669 chr5 120348470 120348626 + 30.5 NA Intergenic Intergenic -28581 NM_028762 74111 Mm.41022 NM_028762 ENSMUSG00000029594 Rbm19 1200009A02Rik|AV302714|KIAA0682|NPO RNA binding motif protein 19 0.019231 0.496815 0.201977 chr8-378 chr8 97893358 97893514 + 30.5 NA intron (NM_018882, intron 3 of 13) intron (NM_018882, intron 3 of 13) -13384 NM_173036 54672 Mm.27995 NM_173036 ENSMUSG00000060470 Gpr97 A030001G24Rik|AW214383|Pb1|Pb99 G protein-coupled receptor 97 0.012821 0.496815 -3.140544 chr5-623 chr5 82105496 82105652 + 30.5 NA intron (NM_198702, intron 1 of 27) intron (NM_198702, intron 1 of 27) 9421 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.012821 0.388535 -4.212750 chr5-637 chr5 96863078 96863234 + 30.5 NA intron (NM_175473, intron 20 of 73) intron (NM_175473, intron 20 of 73) -170530 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 0.000000 0.407643 -1.876497 chr2-619 chr2 164973367 164973523 + 30.5 NA intron (NM_144893, intron 4 of 10) intron (NM_144893, intron 4 of 10) 5587 NM_144893 228875 Mm.21184 NM_144893 ENSMUSG00000017664 Slc35c2 C85957|CGI-15|D2Wsu58e|MGC18664|Ovcov1 solute carrier family 35, member C2 0.006410 0.566879 -0.882680 chr2-567 chr2 102855265 102855421 + 30.5 NA intron (NM_175094, intron 2 of 10) intron (NM_175094, intron 2 of 10) 19009 NM_175094 27402 Mm.315011 NM_175094 ENSMUSG00000010914 Pdhx AI481367|E3bp|Pdx1 pyruvate dehydrogenase complex, component X 0.000000 0.452229 -4.337399 chr5-561 chr5 12589383 12589539 + 30.5 NA intron (NM_028882, intron 17 of 17) intron (NM_028882, intron 17 of 17) 200290 NM_028882 108151 Mm.89313 NM_028882 ENSMUSG00000040254 Sema3d 4631426B19Rik sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D 0.006410 0.535032 -2.260118 chr7-328 chr7 65346379 65346535 + 30.5 NA Intergenic Intergenic -96263 NM_009386 21872 Mm.4342 NM_001163574 ENSMUSG00000030516 Tjp1 ZO1 tight junction protein 1 0.012821 0.433121 2.797346 chr19-136 chr19 4811545 4811701 + 30.5 NA promoter-TSS (NM_019869) promoter-TSS (NM_019869) 11 NM_019869 56275 Mm.441002 NM_019869 ENSMUSG00000006456 Rbm14 1300007E16Rik|Sytip|p16|p16K RNA binding motif protein 14 0.102564 0.611465 -3.598582 chr13-304 chr13 54727664 54727820 + 30.5 NA exon (NM_001033364, exon 10 of 32) exon (NM_001033364, exon 10 of 32) 16658 NM_001033364 268663 Mm.315382 NM_001033364 ENSMUSG00000034918 Cdhr2 Gm624|PC-LKC|Pcdh24 cadherin-related family member 2 0.025641 0.611465 -0.588099 chr10-335 chr10 25467324 25467480 + 30.5 NA Intergenic Intergenic -300268 NR_028030 100040851 Mm.478630 XM_001475247 ENSMUSG00000039098 Gm9767 ENSMUSG00000039098 predicted gene 9767 0.000000 0.439490 -1.511276 chr12-458 chr12 86145239 86145395 + 30.5 NA intron (NM_175337, intron 5 of 11) intron (NM_175337, intron 5 of 11) 14350 NM_175337 217716 Mm.311981 NM_175337 ENSMUSG00000021245 Mlh3 AV125803|BB126472|MGC100285 mutL homolog 3 (E coli) 0.006410 0.547771 3.085520 chr1-668 chr1 80642676 80642832 + 30.5 NA Intergenic L1M5|LINE|L1 -5177 NM_175291 210293 Mm.133473 XM_001472159 ENSMUSG00000038608 Dock10 9330153B10Rik|A630054M16Rik|Jr4|Jr5|MGC183664|R75174|ZIZ3|Zizimin3|mKIAA0694 dedicator of cytokinesis 10 0.000000 0.433121 -0.370920 chr6-400 chr6 92975743 92975899 + 30.5 NA intron (NR_015530, intron 1 of 2) intron (NR_015530, intron 1 of 2) 69736 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.012821 0.471338 -3.105729 chr9-513 chr9 112911147 112911303 + 30.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 645732 NM_001164678 18571 Mm.29816 NM_001164677 ENSMUSG00000032504 Pdcd6ip AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375 programmed cell death 6 interacting protein 0.019231 0.477707 -9.411962 chr5-719 chr5 141126774 141126930 + 30.5 NA exon (NM_175362, exon 24 of 25) exon (NM_175362, exon 24 of 25) -43947 NM_010302 14673 Mm.478529 NM_010302 ENSMUSG00000000149 Gna12 AI414047|AI504261|Galpha12|MGC130498 guanine nucleotide binding protein, alpha 12 0.038462 0.566879 9.947416 chr3-391 chr3 81208339 81208495 + 30.5 NA intron (NM_019971, intron 1 of 5) intron (NM_019971, intron 1 of 5) 86075 NM_019971 54635 Mm.331089 NM_019971 ENSMUSG00000028019 Pdgfc 1110064L01Rik|AI647969|PDGF-C platelet-derived growth factor, C polypeptide 0.006410 0.477707 4.998735 chr17-340 chr17 31626035 31626191 + 30.5 NA Intergenic Intergenic -41611 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Msk|Sik|Snf1lk salt inducible kinase 1 0.000000 0.605096 0.129173 chr8-335 chr8 15011946 15012102 + 30.5 NA intron (NM_029116, intron 1 of 1) intron (NM_029116, intron 1 of 1) 1023 NM_029116 74901 Mm.46675 XM_001474596 ENSMUSG00000055675 Kbtbd11 2900016B01Rik|4930465M17Rik|mKIAA0711 kelch repeat and BTB (POZ) domain containing 11 0.044872 0.624204 3.453044 chr1-617 chr1 51794339 51794495 + 30.5 NA intron (NM_010863, intron 3 of 29) intron (NM_010863, intron 3 of 29) 66102 NM_010863 17912 Mm.3390 NM_001161817 ENSMUSG00000018417 Myo1b AA406997|myosin-1b myosin IB 0.012821 0.382166 1.535995 chr8-346 chr8 36662594 36662750 + 30.5 NA Intergenic Intergenic -181585 NM_177741 244416 Mm.247126 NM_177741 ENSMUSG00000046794 Ppp1r3b 6430576E21|AW821953|GL protein phosphatase 1, regulatory (inhibitor) subunit 3B 0.006410 0.496815 -5.737350 chr16-265 chr16 46461270 46461426 + 30.5 NA Intergenic Intergenic -45044 NM_021497 58998 Mm.440435 NM_021495 ENSMUSG00000022656 Pvrl3 2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082 poliovirus receptor-related 3 0.019231 0.433121 1.020880 chr1-650 chr1 73058742 73058898 + 30.5 NA Intergenic Intergenic -109714 NM_009407 21958 Mm.425024 NM_009407 ENSMUSG00000026182 Tnp1 Stp-1|TP1|Tp-1 transition protein 1 0.019231 0.509554 -3.248646 chr17-326 chr17 28250285 28250441 + 30.5 NA Intergenic Intergenic -8086 NM_026290 67645 Mm.46170 NM_026290 ENSMUSG00000024223 4930511I11Rik AV041658 RIKEN cDNA 4930511I11 gene 0.064103 0.585987 -6.465737 chr6-376 chr6 72708686 72708842 + 30.5 NA intron (NM_009332, intron 3 of 11) intron (NM_009332, intron 3 of 11) 9701 NM_001079822 21415 Mm.440067 NM_001079822 ENSMUSG00000055799 Tcf7l1 Tcf-3|Tcf3|bHLHb21 transcription factor 7-like 1 (T-cell specific, HMG box) 0.006410 0.452229 -4.314398 chr5-566 chr5 23523440 23523596 + 30.5 NA intron (NM_053090, intron 1 of 10) intron (NM_053090, intron 1 of 10) 17230 NM_053090 84652 Mm.304976 NM_053090 ENSMUSG00000028995 Fam126a AB030242|Drctnnb1a family with sequence similarity 126, member A 0.000000 0.363057 -1.377121 chr1-602 chr1 34419730 34419886 + 30.5 NA Intergenic Intergenic 15517 NM_011206 19253 Mm.361 NM_011206 ENSMUSG00000026126 Ptpn18 FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1 protein tyrosine phosphatase, non-receptor type 18 0.012821 0.503185 -1.015024 chr11-582 chr11 99967245 99967401 + 30.5 NA Intergenic Intergenic -5314 NM_008471 16669 Mm.439699 NM_008471 ENSMUSG00000020911 Krt19 AI663979|EndoC|K19|Krt-1.19|Krt1-19|MGC25344 keratin 19 0.025641 0.426752 -4.117878 chr19-162 chr19 30096381 30096537 + 30.5 NA promoter-TSS (NM_144873) promoter-TSS (NM_144873) -50 NM_144873 109113 Mm.313364 NM_144873 ENSMUSG00000024817 Uhrf2 2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf ubiquitin-like, containing PHD and RING finger domains 2 0.089744 0.643312 -1.742130 chr13-274 chr13 28382616 28382772 + 30.5 NA Intergenic Lx2A1|LINE|L1 232746 NM_023746 28078 Mm.155058 NM_023746 ENSMUSG00000017064 Prl5a1 1600013P04Rik|D13Wsu14e|PLP-L|Prlpl|RP23-231P12.2 prolactin family 5, subfamily a, member 1 0.000000 0.356688 -2.697426 chr10-356 chr10 67839862 67840018 + 30.5 NA intron (NM_028491, intron 5 of 7) intron (NM_028491, intron 5 of 7) 97292 NM_028491 73287 Mm.141830 NM_028491 ENSMUSG00000019945 1700040L02Rik - RIKEN cDNA 1700040L02 gene 0.025641 0.433121 -2.336273 chr10-399 chr10 91731056 91731212 + 30.5 NA Intergenic Intergenic -136157 NR_028262 110333 Mm.429764 XM_901917 Rmst AI853140|C230053E11Rik|D930049J19Rik|Dmt2|M2|Ncrms rhabdomyosarcoma 2 associated transcript (non-coding RNA) 0.000000 0.375796 -0.452408 chr13-292 chr13 44296859 44297015 + 30.5 NA Intergenic MLT1L|LTR|MaLR -444937 NM_021878 16468 Mm.25059 NM_021878 ENSMUSG00000038518 Jarid2 AI317256|AU045941|C79929|C79931|Jmj|jumonji jumonji, AT rich interactive domain 2 0.000000 0.407643 -1.746361 chrX-79 chrX 158080471 158080627 + 30.5 NA Intergenic Intergenic -23927 NM_009031 245688 Mm.371732 NM_009031 ENSMUSG00000031353 Rbbp7 AA409861|AI173248|AU019541|BB114024|mRbAp46 retinoblastoma binding protein 7 0.025641 0.592357 -4.665223 chr15-248 chr15 40230034 40230190 + 30.5 NA Intergenic Intergenic -255003 NM_011766 22762 Mm.39496 NM_011766 ENSMUSG00000022306 Zfpm2 B330005D23Rik|FOG-2|FOG2 zinc finger protein, multitype 2 0.019231 0.541401 -4.679446 chr15-289 chr15 86250650 86250806 + 30.5 NA intron (NM_145476, intron 11 of 12) intron (NM_145476, intron 11 of 12) 208504 NM_145476 223754 Mm.28904 NM_145476 ENSMUSG00000051864 Tbc1d22a BC023106|D15Ertd781e|MGC28337 TBC1 domain family, member 22a 0.006410 0.503185 -2.039448 chr7-300 chr7 11015726 11015882 + 30.5 NA Intergenic B1_Mur2|SINE|Alu -42523 NM_134208 171242 Mm.377198 NM_134208 ENSMUSG00000061602 Vmn1r78 MGC130085|MGC130086|V1rg7 vomeronasal 1 receptor 78 0.000000 0.388535 -4.628520 chr12-496 chr12 109137218 109137374 + 30.5 NA TTS (NM_001163395) TTS (NM_001163395) 12817 NM_001171002 70059 Mm.207605 NM_001171002 ENSMUSG00000021263 Degs2 2210008A03Rik|AI852933|DES2 degenerative spermatocyte homolog 2 (Drosophila), lipid desaturase 0.006410 0.560510 -1.328220 chr19-174 chr19 45595166 45595322 + 30.5 NA Intergenic Intergenic 18610 NM_020032 56626 Mm.46509 NM_020032 ENSMUSG00000025218 Poll 1110003P06Rik|AV007317 polymerase (DNA directed), lambda 0.051282 0.630573 -3.672451 chr12-460 chr12 86939097 86939253 + 30.5 NA intron (NM_001081423, intron 33 of 33) intron (NM_001081423, intron 33 of 33) 28969 NM_009368 21809 Mm.3992 NM_009368 ENSMUSG00000021253 Tgfb3 MGC118722|Tgfb-3 transforming growth factor, beta 3 0.012821 0.560510 -2.152221 chr5-640 chr5 99631212 99631368 + 30.5 NA intron (NR_030692, intron 2 of 3) intron (NR_030692, intron 2 of 3) -138061 NM_145839 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.025641 0.509554 1.179223 chr18-228 chr18 23977199 23977355 + 30.5 NA intron (NM_153058, intron 2 of 6) intron (NM_153058, intron 2 of 6) 30298 NM_153058 212307 Mm.132237 NM_001162941 ENSMUSG00000024277 Mapre2 AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 0.019231 0.407643 1.623959 chr3-413 chr3 104830144 104830300 + 30.5 NA Intergenic Intergenic 62494 NM_009196 20501 Mm.9086 NM_009196 ENSMUSG00000032902 Slc16a1 AL022710|Mct1 solute carrier family 16 (monocarboxylic acid transporters), member 1 0.115385 0.649682 1.853905 chr1-598 chr1 32342521 32342677 + 30.5 NA intron (NM_133235, intron 3 of 8) intron (NM_133235, intron 3 of 8) 149240 NM_001164286 408191 Mm.479439 XM_887934 ENSMUSG00000067716 Gm5415 EG408191|Senp14 predicted gene 5415 0.006410 0.452229 -4.651858 chr1-702 chr1 121740590 121740746 + 30.5 NA promoter-TSS (NM_175106) promoter-TSS (NM_175106) 46 NM_175106 66343 Mm.49942 NM_175106 ENSMUSG00000036975 Tmem177 2300008B03Rik transmembrane protein 177 0.076923 0.592357 3.646926 chr17-296 chr17 8874213 8874369 + 30.5 NA Intergenic Intergenic 47785 NM_025851 66931 Mm.67591 NM_025851 ENSMUSG00000023873 1700010I14Rik - RIKEN cDNA 1700010I14 gene 0.006410 0.477707 -2.290903 chr5-646 chr5 103018708 103018864 + 30.5 NA intron (NM_029270, intron 3 of 9) intron (NM_029270, intron 3 of 9) 297094 NM_029270 231532 Mm.477263 NM_029270 ENSMUSG00000057315 Arhgap24 0610025G21Rik|MGC38749 Rho GTPase activating protein 24 0.019231 0.503185 -1.671393 chr6-354 chr6 50586760 50586916 + 30.5 NA Intergenic Intergenic -2859 NM_021892 60531 Mm.157158 NM_021892 ENSMUSG00000029831 Npvf Rfrp neuropeptide VF precursor 0.019231 0.439490 2.813435 chr2-504 chr2 48233491 48233647 + 30.5 NA Intergenic Intergenic -402548 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA 0.000000 0.566879 -2.105194 chr5-711 chr5 139683737 139683893 + 30.5 NA intron (NM_028469, intron 2 of 4) intron (NM_028469, intron 2 of 4) 6995 NM_029771 76854 Mm.389706 NM_029771 ENSMUSG00000053647 Gper 6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gpr30 G protein-coupled estrogen receptor 1 0.044872 0.515924 -3.140544 chr5-675 chr5 124010198 124010354 + 30.5 NA promoter-TSS (NM_001042421) promoter-TSS (NM_001042421) -67 NM_001042421 208628 Mm.441089 NM_001042421 ENSMUSG00000029414 Kntc1 D330012D13 kinetochore associated 1 0.064103 0.535032 -2.608285 chr12-474 chr12 95932756 95932912 + 30.5 NA Intergenic Intergenic -155222 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 KIAA0405 fibronectin leucine rich transmembrane protein 2 0.012821 0.458599 -6.773030 chr1-689 chr1 94235683 94235839 + 30.5 NA Intergenic Intergenic 68403 NM_024197 67273 Mm.248778 NM_024197 ENSMUSG00000026260 Ndufa10 2900053E13Rik NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10 0.025641 0.547771 0.456258 chr7-307 chr7 27000890 27001046 + 30.5 NA Intergenic L1ME4a|LINE|L1 33448 NM_010950 18223 Mm.458153 NM_010950 ENSMUSG00000063160 Numbl nbl numb-like 0.025641 0.433121 -0.618702 chrX-67 chrX 102285384 102285540 + 30.5 NA intron (NM_009726, intron 2 of 22) intron (NM_009726, intron 2 of 22) 55468 NM_009726 11977 Mm.254297 NM_001109757 ENSMUSG00000033792 Atp7a Blo|DXHXS1608e|I14|MNK|Mo|blotchy|br|brindled|mottled ATPase, Cu++ transporting, alpha polypeptide 0.000000 0.394904 -1.259827 chr4-471 chr4 45033428 45033584 + 30.5 NA promoter-TSS (NM_173399) promoter-TSS (NM_173399) 6 NM_001163283 230119 Mm.44222 NM_001163283 ENSMUSG00000049657 Zbtb5 5930421I10|9430083K24Rik|AI646847|KIAA0354|mKIAA0354 zinc finger and BTB domain containing 5 0.096154 0.668790 -7.941219 chr1-657 chr1 75075026 75075182 + 30.5 NA promoter-TSS (NM_026187) promoter-TSS (NM_026187) -34 NM_001003917 245860 Mm.479951 NM_001003917 ENSMUSG00000033124 Atg9a AU019532|Apg9l1|Atg9|Atg9l1|MGC105176 autophagy-related 9A (yeast) 0.051282 0.611465 -3.678941 chr12-413 chr12 36091392 36091548 + 30.5 NA intron (NM_013464, intron 8 of 10) intron (NM_013464, intron 8 of 10) 28591 NM_013464 11622 Mm.341377 NM_013464 ENSMUSG00000019256 Ahr Ah|Ahh|Ahre|In|bHLHe76 aryl-hydrocarbon receptor 0.012821 0.445860 2.535293 chr9-506 chr9 101465682 101465838 + 30.5 NA Intergenic PB1D10|SINE|Alu -357665 NM_001161362 235542 Mm.335386 XM_001474396 ENSMUSG00000043154 Ppp2r3a 3222402P14Rik|A730042E07|MGC29057 protein phosphatase 2, regulatory subunit B'', alpha 0.019231 0.496815 -1.379052 chr9-433 chr9 44127306 44127462 + 30.5 NA Intergenic Intergenic -3100 NM_021395 12282 Mm.116721 NM_021395 ENSMUSG00000032115 Hyou1 AI415631|CBP-140|Cab140|Grp170|Orp150 hypoxia up-regulated 1 0.012821 0.433121 5.313954 chr6-432 chr6 121117507 121117663 + 30.5 NA Intergenic Intergenic -31700 NM_028730 74043 Mm.480690 NM_028730 ENSMUSG00000067825 Pex26 4632428M11Rik|AI853212 peroxisomal biogenesis factor 26 0.006410 0.566879 -3.872824 chr5-661 chr5 114404955 114405111 + 30.5 NA Intergenic Intergenic 12879 NM_011677 22256 Mm.1393 NM_001040691 ENSMUSG00000029591 Ung UNG1|UNG2 uracil DNA glycosylase 0.025641 0.458599 -4.703070 chr2-552 chr2 84516154 84516310 + 30.5 NA promoter-TSS (NM_144887) promoter-TSS (NM_144887) -229 NM_144887 228136 Mm.288508 NM_144887 ENSMUSG00000034075 Zdhhc5 1110032A17Rik|AI451382|MGC28179|Zisp zinc finger, DHHC domain containing 5 0.166667 0.738854 -6.830645 chr4-477 chr4 59425907 59426063 + 30.5 NA intron (NM_001163288, intron 13 of 16) intron (NM_001163288, intron 13 of 16) 106702 NM_001163288 634731 Mm.331637 XM_909547 ENSMUSG00000038578 Susd1 A530080P10|FLJ32142|Gm12528|OTTMUSG00000007332 sushi domain containing 1 0.025641 0.484076 -0.703776 chr4-530 chr4 109769336 109769492 + 30.5 NA intron (NM_001163397, intron 1 of 5) intron (NM_001163397, intron 1 of 5) 15352 NM_010488 15572 Mm.3970 NM_001038698 ENSMUSG00000028546 Elavl4 Elav|Hud|PNEM ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 0.000000 0.382166 -0.303393 chr18-243 chr18 39684396 39684552 + 30.5 NA Intergenic Intergenic -71255 NM_008173 14815 Mm.129481 NM_008173 ENSMUSG00000024431 Nr3c1 GR|Grl-1|Grl1 nuclear receptor subfamily 3, group C, member 1 0.025641 0.496815 -5.901237 chr10-321 chr10 3137357 3137513 + 30.5 NA intron (NM_172546, intron 1 of 12) intron (NM_172546, intron 1 of 12) 3132 NM_172546 215748 Mm.37984 NM_172546 ENSMUSG00000015202 Cnksr3 6820402C05|BC024086|MGC37681|Magi1 Cnksr family member 3 0.019231 0.445860 -5.311080 chr11-598 chr11 105882014 105882170 + 30.5 NA promoter-TSS (NM_027346) promoter-TSS (NM_027346) -104 NM_027346 70207 Mm.343857 NM_027346 ENSMUSG00000001983 Taco1 2310066I18Rik|Ccdc44 translational activator of mitochondrially encoded cytochrome c oxidase I 0.089744 0.624204 -2.707776 chr14-152 chr14 20352386 20352542 + 30.5 NA intron (NM_017479, intron 2 of 16) intron (NM_017479, intron 2 of 16) 64059 NM_017479 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Myst4 AI507552|B130044K16Rik|KAT6B|Morf|mKIAA0383|qkf|querkopf MYST histone acetyltransferase monocytic leukemia 4 0.000000 0.369427 -0.111004 chr10-345 chr10 43268994 43269150 + 30.5 NA intron (NM_009846, intron 1 of 1) intron (NM_009846, intron 1 of 1) 1489 NM_009846 12484 Mm.29742 NM_009846 ENSMUSG00000047139 Cd24a Cd24|HSA|Ly-52|nectadrin CD24a antigen 0.006410 0.382166 2.328370 chr12-472 chr12 93294018 93294033 + 30.5 NA Intergenic RLTR3_Mm-int|LTR|ERVK -1039311 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.000000 0.500000 -22.951033 chr6-365 chr6 56028716 56028872 + 30.5 NA intron (NM_001159953, intron 16 of 18) intron (NM_001159953, intron 16 of 18) 81702 NM_011153 19051 Mm.42096 NM_011153 ENSMUSG00000002930 Gsbs Ppp1r2 G substrate 0.025641 0.445860 -1.080967 chr3-445 chr3 139851134 139851290 + 30.5 NA Intergenic Intergenic 707933 NM_198659 381476 Mm.188334 NM_198659 ENSMUSG00000047940 B930007M17Rik Gm1017 RIKEN cDNA B930007M17 gene 0.006410 0.484076 0.222274 chr1-643 chr1 66893936 66894092 + 30.5 NA Intergenic Intergenic -15750 NM_021285 17901 Mm.1000 NM_001113387 ENSMUSG00000061816 Myl1 AI325107|MLC1f|MLC3f|Mylf myosin, light polypeptide 1 0.012821 0.464968 -5.349716 chr3-378 chr3 51417368 51417524 + 30.5 NA Intergenic Intergenic -3530 NM_023502 69257 Mm.131038 NM_023502 ENSMUSG00000037174 Elf2 2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|MGC102660|NERF|NERF-1A|NERF-1B|NERF-2 E74-like factor 2 0.006410 0.522293 -4.263677 chr3-389 chr3 80192926 80193082 + 30.5 NA Intergenic Intergenic 221148 NM_133187 68659 Mm.460017 NM_133187 ENSMUSG00000027955 Fam198b 1110032E23Rik|2210419I08Rik|AV011458|Ened family with sequence similarity 198, member B 0.006410 0.375796 0.207767 chr11-532 chr11 68940751 68940907 + 30.5 NA Intergenic tRNA-Gln-CAG|tRNA|tRNA -1742 NM_011786 23801 Mm.41989 NM_011786 ENSMUSG00000020892 Aloxe3 MGC143829|MGC143830|e-LOX-3 arachidonate lipoxygenase 3 0.019231 0.375796 -1.173923 chr5-704 chr5 138493569 138493725 + 30.5 NA 5' UTR (NM_153161, exon 1 of 11) 5' UTR (NM_153161, exon 1 of 11) 193 NM_153161 231807 Mm.164493 NM_153161 ENSMUSG00000036948 BC037034 MGC47434 cDNA sequence BC037034 0.121795 0.707006 1.501976 chr4-596 chr4 153941346 153941502 + 30.5 NA intron (NM_001081100, intron 6 of 13) intron (NM_001081100, intron 6 of 13) 11048 NM_001081100 76866 Mm.200590 NM_001081100 ENSMUSG00000029049 Morn1 2900057D20Rik|4930417P05Rik|AU042805 MORN repeat containing 1 0.006410 0.560510 -6.183012 chr14-191 chr14 120281403 120281559 + 30.5 NA intron (NM_134082, intron 2 of 26) intron (NM_134082, intron 2 of 26) 110728 NM_134082 223254 Mm.223980 NM_134082 ENSMUSG00000025555 Farp1 AW228844|BC030329|Cdep FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) 0.012821 0.477707 -3.390049 chr8-341 chr8 24633014 24633170 + 30.5 NA Intergenic Intergenic 14277 NM_029002 74561 Mm.290028 XM_486090 ENSMUSG00000063672 Nkx6-3 9130417I07Rik|Nkx6.3 NK6 homeobox 3 0.019231 0.617834 -6.773030 chr11-516 chr11 58193960 58194116 + 30.5 NA Intergenic Intergenic -1188 NM_027339 70163 Mm.24119 NM_001083884 ENSMUSG00000013643 2210415F13Rik - RIKEN cDNA 2210415F13 gene 0.006410 0.414013 -4.007654 chr7-357 chr7 110442328 110442484 + 30.5 NA Intergenic Intergenic 23561 NM_009627 11535 Mm.1408 NM_009627 ENSMUSG00000030790 Adm AM adrenomedullin 0.025641 0.535032 -2.728548 chr3-458 chr3 147972426 147972582 + 30.5 NA Intergenic MIRb|SINE|MIR 919517 NM_001081298 99633 Mm.331434 NM_001081298 ENSMUSG00000028184 Lphn2 AI450192|Gm619|Lec1|Lphh1|MGC38872|mKIAA0786 latrophilin 2 0.019231 0.414013 -3.724349 chr5-653 chr5 107959741 107959897 + 30.5 NA intron (NM_010278, intron 5 of 5) intron (NM_010278, intron 5 of 5) 4827 NM_010278 14581 Mm.453139 NM_010278 ENSMUSG00000029275 Gfi1 AW495828|Gfi-1|Pal-1|Pal1 growth factor independent 1 0.000000 0.394904 -7.503991 chr5-587 chr5 38364391 38364547 + 30.5 NA intron (NM_026959, intron 1 of 10) intron (NM_026959, intron 1 of 10) 36986 NM_026959 71116 Mm.18959 NM_026959 ENSMUSG00000029125 Stx18 1810035L21Rik|4933425D03Rik|AU041562 syntaxin 18 0.000000 0.439490 -0.754804 chr12-465 chr12 87802466 87802622 + 30.5 NA Intergenic THER1_MD|SINE|MIR -28627 NM_145836 238330 Mm.248358 NM_145836 ENSMUSG00000034168 6430527G18Rik Eap1 RIKEN cDNA 6430527G18 gene 0.019231 0.414013 -3.054684 chr8-359 chr8 60620801 60620957 + 30.5 NA Intergenic Intergenic -75682 NM_144731 108150 Mm.62886 NM_001167981 ENSMUSG00000031608 Galnt7 AI225872 UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 0.006410 0.337580 -4.002104 chr17-378 chr17 72809328 72809484 + 30.5 NA Intergenic Intergenic -13898 NM_029999 77889 Mm.154109 XM_001480246 ENSMUSG00000024063 Lbh 1810009F10Rik|6720416L16Rik limb-bud and heart 0.032051 0.541401 -4.134532 chr15-254 chr15 54364487 54364643 + 30.5 NA Intergenic Intergenic -36883 NM_178920 105853 Mm.410994 NM_178920 ENSMUSG00000024479 Mal2 AI461653|MGC130604 mal, T-cell differentiation protein 2 0.000000 0.484076 -5.463326 chr9-456 chr9 56481678 56481834 + 30.5 NA intron (NM_181074, intron 1 of 3) intron (NM_181074, intron 1 of 3) 1634 NM_181074 235402 Mm.246605 NM_181074 ENSMUSG00000049556 Lingo1 4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201 leucine rich repeat and Ig domain containing 1 0.019231 0.541401 -5.963598 chr17-337 chr17 31036551 31036707 + 30.5 NA intron (NM_153062, intron 3 of 19) intron (NM_153062, intron 3 of 19) 12437 NM_153062 224674 Mm.311395 NM_153062 ENSMUSG00000024036 Slc37a1 G3PP|MGC28167 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 0.006410 0.503185 4.999916 chr12-395 chr12 21548631 21548787 + 30.5 NA intron (NM_018813, intron 9 of 17) intron (NM_018813, intron 9 of 17) -14172 NM_026347 67732 Mm.335830 NM_026347 ENSMUSG00000062054 Iah1 1500019E20Rik|4833421E05Rik isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 0.038462 0.394904 -4.113344 chr4-579 chr4 151600502 151600658 + 30.5 NA Intergenic Intergenic 59241 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.025641 0.484076 -4.252133 chr15-295 chr15 95715492 95715648 + 30.5 NA intron (NM_175344, intron 2 of 19) intron (NM_175344, intron 2 of 19) 96694 NM_175344 105722 Mm.392547 NM_175344 ENSMUSG00000064210 Ano6 2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f anoctamin 6 0.019231 0.522293 -5.342027 chr9-501 chr9 94861570 94861726 + 30.5 NA intron (NM_177909, intron 11 of 15) intron (NM_177909, intron 11 of 15) 354974 NM_018763 54371 Mm.212446 XM_001471695 ENSMUSG00000033350 Chst2 AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st carbohydrate sulfotransferase 2 0.000000 0.496815 0.672476 chr9-488 chr9 75020112 75020268 + 30.5 NA intron (NM_001081322, intron 1 of 40) intron (NM_001081322, intron 1 of 40) 2268 NM_001081322 208943 Mm.41339 NM_001081322 ENSMUSG00000033590 Myo5c 9130003O20Rik|BB085560|C330029I24 myosin VC 0.019231 0.528662 5.381686 chr18-247 chr18 44537587 44537743 + 30.5 NA intron (NM_027490, intron 8 of 10) intron (NM_027490, intron 8 of 10) 31835 NM_027490 70640 Mm.87629 XM_140308 ENSMUSG00000024472 Dcp2 2410015D23Rik|5730537H01Rik|AL118268 DCP2 decapping enzyme homolog (S. cerevisiae) 0.025641 0.414013 -2.796302 chr10-404 chr10 93838608 93838764 + 30.5 NA Intergenic Intergenic -105969 NM_172051 319880 Mm.23047 NM_001168684 ENSMUSG00000020023 Tmcc3 AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 transmembrane and coiled coil domains 3 0.032051 0.484076 -2.867380 chr7-350 chr7 99271808 99271964 + 30.5 NA intron (NM_201352, intron 2 of 17) intron (NM_201352, intron 2 of 17) 16255 NM_201352 233552 Mm.286317 NM_201352 ENSMUSG00000035314 Gdpd5 BC024955|Gde2|MGC31332|MGC37148 glycerophosphodiester phosphodiesterase domain containing 5 0.012821 0.445860 -2.079064 chr7-348 chr7 97725663 97725819 + 30.5 NA intron (NM_011035, intron 1 of 14) intron (NM_011035, intron 1 of 14) 7611 NM_011035 18479 Mm.260227 NM_011035 ENSMUSG00000030774 Pak1 AW045634|PAK-1|Paka p21 protein (Cdc42/Rac)-activated kinase 1 0.012821 0.445860 2.252892 chr18-216 chr18 8645594 8645750 + 30.5 NA Intergenic Intergenic -567181 NM_008058 14370 Mm.184289 NM_008058 ENSMUSG00000036904 Fzd8 Fz8 frizzled homolog 8 (Drosophila) 0.000000 0.458599 -3.374045 chr16-262 chr16 38959207 38959363 + 30.5 NA Intergenic Intergenic 137609 NM_170599 207683 Mm.245564 NM_170599 ENSMUSG00000022790 Igsf11 1700025L02Rik|BT-IgSF|Igsf13 immunoglobulin superfamily, member 11 0.019231 0.426752 -6.222728 chr7-385 chr7 135896762 135896918 + 30.5 NA Intergenic Intergenic -342118 NM_001081117 17345 Mm.4078 XM_001000692 ENSMUSG00000031004 Mki67 D630048A14Rik|Ki-67|Ki67 antigen identified by monoclonal antibody Ki 67 0.019231 0.592357 -1.952170 chr4-498 chr4 86196466 86196622 + 30.5 NA Intergenic Intergenic -23241 NM_184088 329877 Mm.472357 NM_001081014 ENSMUSG00000038024 Dennd4c 1700065A05Rik|AA420392 DENN/MADD domain containing 4C 0.000000 0.445860 3.184833 chr3-380 chr3 52617242 52617398 + 30.5 NA Intergenic Intergenic 261055 NM_019739 56458 Mm.29891 NM_019739 ENSMUSG00000044167 Foxo1 AI876417|Afxh|FKHR|Fkhr1|Foxo1a forkhead box O1 0.019231 0.496815 0.776825 chr7-340 chr7 82141617 82141773 + 30.5 NA intron (NM_017400, intron 2 of 8) intron (NM_017400, intron 2 of 8) -70183 NM_001190374 269959 Mm.65306 XM_194370 Adamtsl3 9230119C12Rik|C130057K09|KIAA1233|mKIAA1233 ADAMTS-like 3 0.000000 0.401274 -0.404235 chr9-429 chr9 36835176 36835332 + 30.5 NA intron (NM_001029838, intron 1 of 12) intron (NM_001029838, intron 1 of 12) 61683 NM_001029838 208076 Mm.260335 NM_001029838 ENSMUSG00000035934 Pknox2 D230005H23Rik|Prep2 Pbx/knotted 1 homeobox 2 0.000000 0.471338 -2.122704 chr1-588 chr1 14122845 14123001 + 30.5 NA Intergenic Intergenic 172490 NM_010164 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor eyes absent 1 homolog (Drosophila) 0.000000 0.343949 -1.817781 chr16-248 chr16 30104693 30104849 + 30.5 NA Intergenic Intergenic 82508 NM_027904 71756 Mm.290614 NM_027904 ENSMUSG00000023176 Cpn2 1300018K11Rik carboxypeptidase N, polypeptide 2 0.032051 0.611465 -1.700886 chr7-395 chr7 143577837 143577993 + 30.5 NA Intergenic Intergenic -1532 NM_203492 381974 Mm.297839 NM_203492 ENSMUSG00000050276 Mrgprg Gm1098|Mrgg MAS-related GPR, member G 0.019231 0.464968 -4.552864 chr11-546 chr11 81070525 81070681 + 30.5 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) -101505 NM_007384 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.006410 0.439490 -3.294933 chr12-504 chr12 111985643 111985799 + 30.5 NA promoter-TSS (NM_178041) promoter-TSS (NM_178041) -187 NM_178041 217869 Mm.470192 NM_173363 ENSMUSG00000021282 Eif5 2810011H21Rik|D12Ertd549e|MGC36374|MGC36509 eukaryotic translation initiation factor 5 0.102564 0.649682 -5.180315 chr9-440 chr9 46818762 46818918 + 30.5 NA Intergenic Intergenic 154243 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.012821 0.394904 -5.368755 chr11-485 chr11 11755173 11755329 + 30.5 NA intron (NM_001190448, intron 6 of 14) intron (NM_001190448, intron 6 of 14) 35160 NM_016672 13195 Mm.12906 NM_001190448 ENSMUSG00000020182 Ddc Aadc dopa decarboxylase 0.019231 0.509554 0.675045 chr2-532 chr2 70213207 70213363 + 30.5 NA intron (NM_177376, intron 32 of 34) intron (NM_177376, intron 32 of 34) -62476 NM_022435 64406 Mm.423397 NM_022435 ENSMUSG00000075304 Sp5 MGC144801|MGC144802 trans-acting transcription factor 5 0.032051 0.490446 -3.556344 chr4-514 chr4 101167792 101167948 + 30.5 NA Intergenic Intergenic 22156 NM_175036 230514 Mm.4756 NM_175036 ENSMUSG00000035212 Leprot LEPR|MGC6694|OB-RGRP|Obrgrp|VPS55 leptin receptor overlapping transcript 0.012821 0.382166 -5.119909 chr10-351 chr10 57977808 57977964 + 30.5 NA Intergenic Lx|LINE|L1 84593 NM_001162956 76138 Mm.211744 NM_001162956 Ccdc138 6230424H07Rik|BC042726 coiled-coil domain containing 138 0.000000 0.356688 -2.531132 chr11-530 chr11 68454201 68454357 + 30.5 NA Intergenic Intergenic 51048 NM_177779 276920 Mm.123046 NM_177779 ENSMUSG00000045915 Ccdc42 A530001H01Rik coiled-coil domain containing 42 0.019231 0.547771 0.232414 chr9-411 chr9 13831656 13831812 + 30.5 NA Intergenic Intergenic -194963 NM_030261 75747 Mm.439776 NM_030261 ENSMUSG00000032009 Sesn3 5630400E15Rik|BC003348|MGC7182|SEST3 sestrin 3 0.000000 0.331210 1.934121 chr10-405 chr10 93963116 93963272 + 30.5 NA intron (NM_172051, intron 1 of 3) intron (NM_172051, intron 1 of 3) 18539 NM_172051 319880 Mm.23047 NM_001168684 ENSMUSG00000020023 Tmcc3 AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 transmembrane and coiled coil domains 3 0.025641 0.471338 -8.605636 chr1-721 chr1 137064931 137065087 + 30.5 NA Intergenic Intergenic 9874 NM_001163131 13710 Mm.441439 NM_001163131 ENSMUSG00000003051 Elf3 ESE-1|ESX|jen E74-like factor 3 0.038462 0.579618 0.675045 chr5-648 chr5 103451529 103451685 + 30.5 NA promoter-TSS (NM_001081567) promoter-TSS (NM_001081567) 29 NM_001081567 26414 Mm.472459 NM_001081567 ENSMUSG00000046709 Mapk10 C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK mitogen-activated protein kinase 10 0.019231 0.560510 -1.533436 chr3-403 chr3 98054129 98054285 + 30.5 NA Intergenic Intergenic 38630 NM_001033779 433632 Mm.212421 NM_001033779 ENSMUSG00000074388 Gm5544 EG433632 predicted gene 5544 0.006410 0.445860 -1.569388 chr9-418 chr9 20726914 20727070 + 30.5 NA intron (NM_010333, intron 1 of 1) intron (NM_010333, intron 1 of 1) 203 NM_010333 14739 Mm.46493 NM_010333 ENSMUSG00000043895 S1pr2 1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2 sphingosine-1-phosphate receptor 2 0.089744 0.751592 -4.811411 chrX-76 chrX 155240457 155240613 + 30.5 NA intron (NM_021389, intron 7 of 16) intron (NM_021389, intron 7 of 16) 55963 NM_001135728 58194 Mm.286495 NM_001135727 ENSMUSG00000040990 Sh3kbp1 1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|IN85|Ruk|Seta SH3-domain kinase binding protein 1 0.006410 0.407643 -5.824544 chr2-499 chr2 35679027 35679183 + 30.5 NA intron (NM_029774, intron 6 of 9) intron (NM_029774, intron 6 of 9) 122528 NM_028921 74410 Mm.21591 NM_028921 ENSMUSG00000026885 Ttll11 4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e tubulin tyrosine ligase-like family, member 11 0.012821 0.382166 2.302610 chr6-393 chr6 90474028 90474184 + 30.5 NA Intergenic Intergenic -42245 NM_027406 107747 Mm.30035 NM_027406 ENSMUSG00000030088 Aldh1l1 1810048F20Rik|Fthfd|Neut2 aldehyde dehydrogenase 1 family, member L1 0.000000 0.515924 -1.538784 chr11-621 chr11 117348596 117348752 + 30.5 NA Intergenic Intergenic -78662 NR_015489 78403 Mm.212543 NR_015489 2900041M22Rik - RIKEN cDNA 2900041M22 gene 0.019231 0.585987 -2.599948 chr8-366 chr8 74300267 74300423 + 30.5 NA promoter-TSS (NM_029865) promoter-TSS (NM_029865) 59 NM_029865 77090 Mm.440170 NM_029865 ENSMUSG00000002396 Ocel1 9430098E02Rik|AI326022|AI593544 occludin/ELL domain containing 1 0.102564 0.726115 -5.106111 chr5-687 chr5 130506943 130507099 + 30.5 NA intron (NM_001081394, intron 1 of 6) intron (NM_001081394, intron 1 of 6) 2575 NM_001081394 71667 Mm.258508 NM_001081394 ENSMUSG00000053094 0610007L01Rik A930023A16Rik|AW557951|G430067H08Rik RIKEN cDNA 0610007L01 gene 0.173077 0.738854 -3.383870 chr11-623 chr11 117792274 117792430 + 30.5 NA Intergenic Intergenic -6896 NM_007707 12702 Mm.3468 NM_007707 ENSMUSG00000053113 Socs3 Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3 suppressor of cytokine signaling 3 0.032051 0.643312 2.287222 chr8-411 chr8 127397618 127397774 + 30.5 NA Intergenic Intergenic -9160 NM_029746 76332 Mm.240108 NM_029746 ENSMUSG00000031979 Cog2 1190002B08Rik|2700012E02Rik|C86089|Ldlc component of oligomeric golgi complex 2 0.006410 0.439490 2.252891 chr6-383 chr6 84672777 84672933 + 30.5 NA intron (NM_177077, intron 20 of 21) intron (NM_177077, intron 20 of 21) -113289 NM_001177713 232174 Mm.255246 NM_001177713 ENSMUSG00000063415 Cyp26b1 CP26|P450RAI-2 cytochrome P450, family 26, subfamily b, polypeptide 1 0.006410 0.496815 -2.972178 chrX-75 chrX 147597554 147597710 + 30.5 NA intron (NM_013668, intron 12 of 25) intron (NM_013668, intron 12 of 25) 23687 NM_013668 20591 Mm.142655 NM_013668 ENSMUSG00000025332 Kdm5c Jarid1c|Smcx|mKIAA0234 lysine (K)-specific demethylase 5C 0.006410 0.426752 -0.467290 chr12-389 chr12 13684622 13684778 + 30.5 NA Intergenic L1VL4|LINE|L1 389586 NM_027706 71169 Mm.177520 XM_484120 Nbas 4933425L03Rik|Nag neuroblastoma amplified sequence 0.000000 0.484076 -0.860460 chr14-160 chr14 44938206 44938362 + 30.5 NA Intergenic L2|LINE|L2 -67619 NR_002875 218963 Mm.315924 NR_002856 Gm1821 - ubiquitin pseudogene 0.006410 0.407643 -5.886438 chr5-726 chr5 143378218 143378374 + 30.5 NA promoter-TSS (NM_080561) promoter-TSS (NM_080561) -136 NM_207110 108086 Mm.381440 NM_080561 ENSMUSG00000045078 Rnf216 2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1 ring finger protein 216 0.038462 0.585987 -3.472536 chr1-634 chr1 63111313 63111469 + 30.5 NA promoter-TSS (NM_145518) promoter-TSS (NM_145518) 285 NM_018796 55949 Mm.2718 NM_018796 ENSMUSG00000025967 Eef1b2 2810017J07Rik|Eef1b eukaryotic translation elongation factor 1 beta 2 0.096154 0.611465 -4.785292 chr12-482 chr12 102933639 102933795 + 30.5 NA Intergenic Intergenic -22301 NM_007693 12652 Mm.4137 NM_007693 ENSMUSG00000021194 Chga - chromogranin A 0.019231 0.471338 -3.007109 chr6-422 chr6 115191343 115191499 + 30.5 NA intron (NM_001111015, intron 1 of 12) intron (NM_001111015, intron 1 of 12) 26047 NM_080639 110595 Mm.255607 NM_080639 ENSMUSG00000030317 Timp4 TIMP-4 tissue inhibitor of metalloproteinase 4 0.000000 0.407643 -5.119909 chr2-470 chr2 25094394 25094550 + 30.5 NA promoter-TSS (NM_023464) promoter-TSS (NM_023464) -2 NM_175300 99152 Mm.291624 NM_175300 ENSMUSG00000026965 Anapc2 9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406 anaphase promoting complex subunit 2 0.102564 0.662420 -5.369615 chr11-495 chr11 29072818 29072974 + 30.5 NA promoter-TSS (NM_134034) promoter-TSS (NM_134034) -10 NM_134034 104570 Mm.276386 XM_001479721 ENSMUSG00000020463 Smek2 AW011752|AW557776|KIAA1387|mKIAA1387 SMEK homolog 2, suppressor of mek1 (Dictyostelium) 0.108974 0.649682 -3.511849 chr9-482 chr9 67295573 67295729 + 30.5 NA intron (NM_001081242, intron 1 of 57) intron (NM_001081242, intron 1 of 57) 63196 NM_001081242 70549 Mm.33645 NM_001081242 ENSMUSG00000052698 Tln2 5730421P04Rik|AI507121|AI787438|AL118320|MGC100340|mKIAA0320 talin 2 0.000000 0.458599 0.462600 chr9-498 chr9 86847469 86847625 + 30.5 NA intron (NM_024195, intron 10 of 15) intron (NM_024195, intron 10 of 15) 27573 NM_024195 266690 Mm.477392 NM_024195 ENSMUSG00000032872 Cyb5r4 2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r cytochrome b5 reductase 4 0.000000 0.426752 -1.600152 chr1-642 chr1 66709240 66709396 + 30.5 NA intron (NM_177645, intron 3 of 13) intron (NM_177645, intron 3 of 13) 41485 NM_177645 68691 Mm.461139 NM_001122738 ENSMUSG00000026004 1110028C15Rik 1190030G24|AI427598|C430010P07Rik|KIAA4189|MGC175997|mKIAA4189 RIKEN cDNA 1110028C15 gene 0.006410 0.401274 -4.177370 chr2-486 chr2 31085900 31086056 + 30.5 NA intron (NM_019681, intron 1 of 7) intron (NM_019681, intron 1 of 7) 18047 NM_019681 14299 Mm.249318 NM_019681 ENSMUSG00000062661 Ncs1 9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1 neuronal calcium sensor 1 0.012821 0.617834 2.138631 chr1-603 chr1 35751407 35751563 + 30.5 NA Intergenic Intergenic -261460 NM_015818 50785 Mm.213566 NM_015818 ENSMUSG00000045216 Hs6st1 6Ost1 heparan sulfate 6-O-sulfotransferase 1 0.006410 0.509554 -11.034993 chr7-361 chr7 113700758 113700914 + 30.5 NA intron (NM_145584, intron 5 of 15) intron (NM_145584, intron 5 of 15) 143658 NM_145584 233744 Mm.334160 NM_145584 ENSMUSG00000038156 Spon1 AI666765|AW455831|BC020531|D330035F22Rik|FSP spondin 1, (f-spondin) extracellular matrix protein 0.012821 0.490446 0.749237 chr11-633 chr11 120817942 120818098 + 30.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -10597 NM_027874 104318 Mm.216227 NM_027874 ENSMUSG00000025162 Csnk1d 1200006A05Rik|AA409348|D930010H05Rik casein kinase 1, delta 0.006410 0.458599 -4.951840 chr3-375 chr3 51273407 51273563 + 30.5 NA Intergenic L2|LINE|L2 -38890 NM_009834 12457 Mm.86541 NM_009834 ENSMUSG00000023087 Ccrn4l AU043840|Ccr4|nocturnin CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.019231 0.496815 -0.355719 chr12-393 chr12 17315642 17315798 + 30.5 NA intron (NM_001159632, intron 11 of 14) intron (NM_001159632, intron 11 of 14) 23646 NM_027959 71853 Mm.222825 NM_027959 ENSMUSG00000020571 Pdia6 1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7 protein disulfide isomerase associated 6 0.012821 0.458599 -3.725265 chr6-330 chr6 7982041 7982197 + 30.5 NA intron (NM_001037865, intron 27 of 34) intron (NM_001037865, intron 27 of 34) 160498 NM_001037865 213945 Mm.297404 NM_001037865 ENSMUSG00000068794 Col28a1 Col28|Gm466 collagen, type XXVIII, alpha 1 0.006410 0.407643 1.330818 chr5-738 chr5 151514789 151514945 + 30.5 NA Intergenic Intergenic -56295 NM_146258 243362 Mm.209272 NM_001163493 ENSMUSG00000016128 Stard13 DLC2|GT650|MGC38133 StAR-related lipid transfer (START) domain containing 13 0.006410 0.445860 -4.971229 chr15-267 chr15 71559038 71559194 + 30.5 NA Intergenic Intergenic -1609 NM_177819 70363 Mm.126450 NM_027401 Fam135b 1700010C24Rik|A830008O07Rik|MGC159348|MGC159350 family with sequence similarity 135, member B 0.025641 0.363057 -2.910563 chr9-533 chr9 119859904 119860060 + 30.5 NA Intergenic CpG 12314 NM_011724 22437 Mm.10117 NM_001081339 Xirp1 AI415219|Cmya1|MGC144145|MGC144146 xin actin-binding repeat containing 1 0.134615 0.713376 -0.349266 chr5-592 chr5 51433309 51433465 + 30.5 NA Intergenic Intergenic 408782 NR_027710 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|PGC-1|PGC-1v|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 0.006410 0.452229 2.501866 chr3-423 chr3 116591783 116591939 + 30.5 NA intron (NM_030016, intron 1 of 11) intron (NM_030016, intron 1 of 11) 4850 NM_028349 72776 Mm.440836 NM_028349 ENSMUSG00000027959 Sass6 2810453L12Rik spindle assembly 6 homolog (C. elegans) 0.006410 0.433121 -4.769458 chr16-263 chr16 43384232 43384388 + 30.5 NA intron (NM_019778, intron 3 of 8) intron (NM_019778, intron 3 of 8) -175676 NR_030576 100124467 NR_030576 Mir568 Mirn568|mmu-mir-568 microRNA 568 0.019231 0.471338 -2.674087 chr17-298 chr17 9475660 9475816 + 30.5 NA Intergenic Intergenic 37323 NM_001163836 67543 Mm.26987 NM_001163836 Pabpc6 4932702K14Rik|AI428050|MGC132900|Pabpc3 poly(A) binding protein, cytoplasmic 6 0.019231 0.452229 -6.336118 chr5-624 chr5 82165971 82166127 + 30.5 NA intron (NM_198702, intron 2 of 27) intron (NM_198702, intron 2 of 27) 69896 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.000000 0.414013 -1.318406 chr7-370 chr7 121302896 121303052 + 30.5 NA Intergenic Intergenic 119531 NM_001081327 195646 Mm.247449 NM_001081327 ENSMUSG00000046321 Hs3st2 6430516N12Rik|A830061E14Rik|AW491345 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 0.019231 0.369427 -4.149695 chr6-390 chr6 88484716 88484872 + 30.5 NA promoter-TSS (NM_016906) promoter-TSS (NM_016906) -353 NM_016906 53421 Mm.480589 NM_016906 ENSMUSG00000030082 Sec61a1 AA408394|AA410007|Sec61a Sec61 alpha 1 subunit (S. cerevisiae) 0.051282 0.598726 -5.774172 chr13-338 chr13 102578932 102579088 + 30.5 NA Intergenic Intergenic 213894 NM_001024955 18708 Mm.259333 NM_001024955 ENSMUSG00000041417 Pik3r1 AA414921|C530050K14|PI3K|p50alpha|p55alpha|p85alpha phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) 0.006410 0.420382 -8.390053 chr18-222 chr18 12953539 12953695 + 30.5 NA intron (NM_207530, intron 17 of 27) intron (NM_207530, intron 17 of 27) 69094 NM_027687 71132 Mm.179740 NM_001042418 ENSMUSG00000024430 Cabyr 1700016C01Rik|4933421A18Rik|CBP86|FSP-2|MGC130217|MGC130218 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 0.012821 0.452229 6.244150 chr15-236 chr15 31546313 31546469 + 30.5 NA promoter-TSS (NM_007637) promoter-TSS (NM_007637) 2 NM_007637 12465 Mm.282158 NM_007637 ENSMUSG00000022234 Cct5 Ccte|TCPE|mKIAA0098 chaperonin containing Tcp1, subunit 5 (epsilon) 0.089744 0.585987 1.242151 chr2-479 chr2 27775940 27776096 + 30.5 NA intron (NM_015734, intron 9 of 65) intron (NM_015734, intron 9 of 65) 67585 NM_015734 12831 Mm.7281 NM_015734 ENSMUSG00000026837 Col5a1 AI413331 collagen, type V, alpha 1 0.006410 0.535032 3.181372 chr10-371 chr10 79034624 79034780 + 30.5 NA intron (NM_001024539, intron 1 of 12) intron (NM_001024539, intron 1 of 12) 6345 NM_001024539 216148 Mm.39424 XM_001478068 ENSMUSG00000020312 Shc2 6720466E06|SCK|ShcB|Sli SHC (Src homology 2 domain containing) transforming protein 2 0.025641 0.560510 -0.277299 chr2-617 chr2 164235832 164235988 + 30.5 NA Intergenic ID_B1|SINE|B4 -18010 NM_026323 67701 Mm.27289 NM_026323 ENSMUSG00000017723 Wfdc2 1600023A02Rik|HE4|WAP5 WAP four-disulfide core domain 2 0.012821 0.496815 0.162160 chr6-437 chr6 146447190 146447346 + 30.5 NA intron (NM_010586, intron 1 of 55) intron (NM_010586, intron 1 of 55) 11814 NM_010586 16439 Mm.393003 NM_010586 ENSMUSG00000030287 Itpr2 AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5 inositol 1,4,5-triphosphate receptor 2 0.019231 0.477707 0.502095 chr3-435 chr3 122508376 122508532 + 30.5 NA intron (NM_013867, intron 7 of 11) intron (NM_013867, intron 7 of 11) 96653 NM_013867 29815 Mm.45815 NM_013867 ENSMUSG00000028121 Bcar3 AI131758|AND-34 breast cancer anti-estrogen resistance 3 0.000000 0.471338 -4.313395 chr17-379 chr17 77942043 77942199 + 30.5 NA Intergenic L2|LINE|L2 -163184 NM_015800 50766 Mm.311912 NM_015800 ENSMUSG00000024074 Crim1 AU015004 cysteine rich transmembrane BMP regulator 1 (chordin like) 0.000000 0.356688 -3.181403 chr5-609 chr5 68175243 68175399 + 30.5 NA Intergenic Intergenic -48755 NM_009727 11980 Mm.153230 NM_001038999 ENSMUSG00000037685 Atp8a1 AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI|KIAA4233|mKIAA4233 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 0.006410 0.414013 -4.774666 chr11-504 chr11 51938032 51938188 + 30.5 NA Intergenic Intergenic -4136 NM_019411 19052 Mm.260288 NM_019411 ENSMUSG00000020349 Ppp2ca PP2A|R75353 protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform 0.012821 0.452229 -3.217515 chr14-148 chr14 16777215 16777371 + 30.5 NA intron (NM_009380, intron 1 of 6) intron (NM_009380, intron 1 of 6) 2383 NM_009380 21834 Mm.480163 NM_001113417 ENSMUSG00000021779 Thrb MGC141269|MGC141270|Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta thyroid hormone receptor beta 0.025641 0.388535 -1.437408 chr15-240 chr15 35214349 35214505 + 30.5 NA Intergenic Intergenic -26273 NM_054049 107587 Mm.46336 NM_054049 ENSMUSG00000022330 Osr2 5430409I15Rik|Osr2A|Osr2B odd-skipped related 2 (Drosophila) 0.012821 0.426752 -3.241093 chr11-554 chr11 84687074 84687230 + 30.5 NA promoter-TSS (NM_153144) promoter-TSS (NM_153144) -219 NM_153144 217039 Mm.356653 NM_153144 ENSMUSG00000020530 Ggnbp2 AI451896|C75939|D330017P12Rik|DIF-3|Zfp403 gametogenetin binding protein 2 0.102564 0.662420 5.203865 chr14-147 chr14 12829801 12829957 + 30.5 NA intron (NM_139227, intron 3 of 11) intron (NM_139227, intron 3 of 11) 24122 NM_139227 246103 Mm.133625 NM_139227 ENSMUSG00000021738 Atxn7 A430107N12Rik|AI627028|Sca7|ataxin-7 ataxin 7 0.006410 0.414013 -4.865785 chr2-626 chr2 166901257 166901413 + 30.5 NA intron (NM_008968, intron 6 of 9) intron (NM_008968, intron 6 of 9) -21331 NM_008420 16500 Mm.387390 NM_008420 ENSMUSG00000050556 Kcnb1 Kcr1-1|Kv2.1|Shab potassium voltage gated channel, Shab-related subfamily, member 1 0.038462 0.598726 -0.292662 chr17-353 chr17 42454796 42454952 + 30.5 NA Intergenic Intergenic -25164 NM_178589 94185 Mm.200792 NM_178589 ENSMUSG00000023915 Tnfrsf21 AA959878|DR6|R74815|TR7 tumor necrosis factor receptor superfamily, member 21 0.012821 0.528662 3.231091 chr1-776 chr1 181821019 181821175 + 30.5 NA intron (NM_001033285, intron 1 of 36) intron (NM_001033285, intron 1 of 36) 23334 NM_001033285 226751 Mm.259655 XM_975852 ENSMUSG00000026490 Cdc42bpa A930014J19Rik|DMPK-like|MGC189823 CDC42 binding protein kinase alpha 0.000000 0.503185 -5.435803 chr17-308 chr17 13660115 13660271 + 30.5 NA Intergenic Intergenic -24720 NM_001122977 635895 Mm.388844 XM_001473973 ENSMUSG00000067941 Gm7168 EG635895|MGC130373|MGC141510 predicted gene 7168 0.006410 0.528662 -4.423164 chr2-468 chr2 19197384 19197540 + 30.5 NA intron (NM_001081083, intron 10 of 19) intron (NM_001081083, intron 10 of 19) 80591 NM_001081083 70882 Mm.276696 NM_001081083 ENSMUSG00000037683 Armc3 4921513G22Rik armadillo repeat containing 3 0.025641 0.484076 -1.506622 chr8-376 chr8 93191604 93191760 + 30.5 NA intron (NM_172913, intron 1 of 6) intron (NM_172913, intron 1 of 6) 46675 NM_172913 244579 Mm.302755 NM_172913 ENSMUSG00000043668 Tox3 500-9|BC052044|C230068E13|CAGF9|Tnrc9 TOX high mobility group box family member 3 0.019231 0.426752 -2.107620 chr12-428 chr12 55385456 55385612 + 30.5 NA Intergenic Intergenic -72590 NR_033689 665239 XM_975549 Gm7550 EG665239|Gm666 predicted gene 7550 0.012821 0.394904 -2.880926 chr1-786 chr1 186986550 186986706 + 30.5 NA TTS (NM_198653) TTS (NM_198653) -27478 NR_029580 387189 NR_029580 Mir194-1 Mirn194|Mirn194-1|miR-194 microRNA 194-1 0.019231 0.414013 -4.374805 chr10-368 chr10 77218745 77218901 + 30.5 NA Intergenic Intergenic 11343 NM_001135991 100191037 Mm.432613 NM_001135991 Krtap10-4 675238|A030009A09Rik|AA589524|MGC144318|MGC144319 keratin associated protein 10-4 0.025641 0.528662 1.434221 chr11-614 chr11 115568943 115569099 + 30.5 NA Intergenic Intergenic -12501 NM_028014 71947 Mm.23168 NM_028014 ENSMUSG00000020747 2310067B10Rik Kiaa0195|mKIAA0195 RIKEN cDNA 2310067B10 gene 0.019231 0.458599 2.926081 chr5-618 chr5 78026471 78026627 + 30.5 NA promoter-TSS (NM_172146) promoter-TSS (NM_172146) -196 NM_172146 231327 Mm.202337 XM_001002879 ENSMUSG00000029246 Ppat 5730454C12Rik|AA408689|AA675351|AI507113|C79945|MGC38417 phosphoribosyl pyrophosphate amidotransferase 0.057692 0.560510 -4.366058 chr15-302 chr15 100146321 100146477 + 30.5 NA Intergenic Intergenic 13549 NM_027334 70152 Mm.479878 NM_027334 ENSMUSG00000054619 Mettl7a1 2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1 methyltransferase like 7A1 0.006410 0.420382 3.491362 chr1-584 chr1 13173758 13173914 + 30.5 NA intron (NM_001077695, intron 5 of 21) intron (NM_001077695, intron 5 of 21) -61459 NM_001081209 383491 Mm.309380 NM_001081209 ENSMUSG00000042414 Prdm14 - PR domain containing 14 0.019231 0.496815 -4.796051 chr1-765 chr1 171704496 171704652 + 30.5 NA Intergenic Intergenic -61039 NM_001033185 78465 Mm.470480 NM_001033185 ENSMUSG00000070532 1700084C01Rik - RIKEN cDNA 1700084C01 gene 0.000000 0.503185 -2.064624 chr4-536 chr4 116688276 116688432 + 30.5 NA Intergenic Intergenic -7798 NM_134471 73804 Mm.247651 NM_134471 ENSMUSG00000028678 Kif2c 4930402F02Rik|ESTM5|Knsl6|MCAK|MGC11883|X83316 kinesin family member 2C 0.006410 0.471338 -2.862083 chr18-261 chr18 74510103 74510259 + 30.5 NA Intergenic Intergenic -57802 NM_201600 17919 Mm.260098 NM_201600 ENSMUSG00000025885 Myo5b AI661750|mKIAA1119 myosin VB 0.006410 0.477707 1.472080 chr5-573 chr5 24597405 24597561 + 30.5 NA intron (NM_145401, intron 1 of 15) intron (NM_145401, intron 1 of 15) 13224 NM_145401 108099 Mm.33649 NM_001170555 ENSMUSG00000028944 Prkag2 2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit 0.019231 0.535032 1.923383 chr4-595 chr4 153359605 153359761 + 30.5 NA intron (NM_001177995, intron 2 of 15) intron (NM_001177995, intron 2 of 15) 120990 NM_001177995 70673 Mm.257785 NM_001177995 ENSMUSG00000039410 Prdm16 5730557K01Rik|C130091E20|KIAA1675|csp1|mKIAA1675|mel1 PR domain containing 16 0.006410 0.484076 -0.275805 chr15-225 chr15 21457018 21457174 + 30.5 NA intron (NM_001008420, intron 5 of 11) intron (NM_001008420, intron 5 of 11) 400920 NM_001008420 215654 Mm.300909 NM_001008420 ENSMUSG00000040452 Cdh12 Cdhb|MGC92959 cadherin 12 0.000000 0.375796 4.526654 chr1-779 chr1 183239844 183240000 + 30.5 NA intron (NM_001160211, intron 1 of 5) intron (NM_001160211, intron 1 of 5) 50620 NM_001160211 72978 Mm.338083 NM_001160211 ENSMUSG00000026514 Cnih3 2900075G08Rik cornichon homolog 3 (Drosophila) 0.012821 0.554140 -4.426816 chr1-623 chr1 54628503 54628659 + 30.5 NA intron (NM_001081433, intron 16 of 27) intron (NM_001081433, intron 16 of 27) -126354 NM_001163314 241062 Mm.253601 XM_892623 ENSMUSG00000070889 Pgap1 5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto post-GPI attachment to proteins 1 0.000000 0.324841 5.361334 chr15-278 chr15 80956753 80956909 + 30.5 NA intron (NM_001082536, intron 1 of 13) intron (NM_001082536, intron 1 of 13) -24557 NM_153049 223701 Mm.439814 NM_001082536 ENSMUSG00000042292 Mkl1 AI852829|AMKL|AW743281|AW821984|Bsac|Mal|Mrtf-A MKL (megakaryoblastic leukemia)/myocardin-like 1 0.000000 0.420382 5.555216 chr19-175 chr19 46307692 46307848 + 30.5 NA intron (NM_178930, intron 6 of 39) intron (NM_178930, intron 6 of 39) -50277 NM_001177369 18034 Mm.102365 NM_001177369 ENSMUSG00000025225 Nfkb2 NF-kappaB2|lyt|p49|p49/p100|p50B|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100 0.012821 0.458599 1.904833 chr13-293 chr13 44653619 44653775 + 30.5 NA Intergenic RSINE1|SINE|B4 -88177 NM_021878 16468 Mm.25059 NM_021878 ENSMUSG00000038518 Jarid2 AI317256|AU045941|C79929|C79931|Jmj|jumonji jumonji, AT rich interactive domain 2 0.019231 0.522293 -2.339369 chr13-317 chr13 63919226 63919382 + 30.5 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 94749 NM_023507 76251 Mm.186610 NM_001013608 ENSMUSG00000021470 0610007P08Rik 1700019D06Rik|9330134C04Rik|MGC100170|Rad26l|Sr278 RIKEN cDNA 0610007P08 gene 0.000000 0.388535 -2.606027 chr11-522 chr11 61893303 61893459 + 30.5 NA promoter-TSS (NM_001029936) promoter-TSS (NM_001029936) 90 NM_001029936 432572 Mm.458025 NM_001029936 ENSMUSG00000042331 Cytsb 2810012G08Rik|B230396K10Rik|KIAA4061|Specc1|mKIAA4061 cytospin B 0.147436 0.751592 -6.669792 chr10-380 chr10 80837146 80837302 + 30.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -6922 NM_026756 18029 Mm.453078 NM_008688 ENSMUSG00000055053 Nfic 1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C nuclear factor I/C 0.044872 0.579618 -4.508139 chr5-671 chr5 120775148 120775304 + 30.5 NA intron (NM_001177595, intron 2 of 13) intron (NM_001177595, intron 2 of 13) 3418 NM_133221 170756 Mm.291070 NM_001177594 ENSMUSG00000032754 Slc24a6 AF261233|NCKX6|NCLX solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 0.000000 0.477707 -3.306578 chr6-345 chr6 38053623 38053779 + 30.5 NA 3' UTR (NM_194061, exon 20 of 20) 3' UTR (NM_194061, exon 20 of 20) 493 NM_080467 140494 Mm.471742 NM_080467 ENSMUSG00000038600 Atp6v0a4 Atp6n1b|a4 ATPase, H+ transporting, lysosomal V0 subunit A4 0.032051 0.426752 -4.157830 chr2-503 chr2 39012931 39013087 + 30.5 NA promoter-TSS (NM_178778) promoter-TSS (NM_178778) -270 NM_178778 320271 Mm.204836 NM_178778 ENSMUSG00000035236 Scai 9330112M16|A930041I02Rik|AI662729 suppressor of cancer cell invasion 0.038462 0.598726 -4.343578 chr5-645 chr5 102638228 102638384 + 30.5 NA Intergenic Intergenic -83386 NM_146161 231532 Mm.477263 NM_029270 ENSMUSG00000057315 Arhgap24 0610025G21Rik|MGC38749 Rho GTPase activating protein 24 0.006410 0.414013 -1.383300 chr18-252 chr18 55383942 55384098 + 30.5 NA Intergenic Intergenic -268471 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.006410 0.458599 0.912443 chr9-416 chr9 15056366 15056522 + 30.5 NA promoter-TSS (NM_029248) promoter-TSS (NM_029248) -162 NM_029248 75316 Mm.354115 NM_027261 ENSMUSG00000031939 Taf1d 2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|MGC117821|TAF(I)41|TAFI41 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D 0.032051 0.547771 2.953669 chr5-654 chr5 110747685 110747841 + 30.5 NA Intergenic PB1D9|SINE|Alu -36883 NM_198306 231605 Mm.275748 NM_001122639 Galnt9 6430598F23|GalNAc-T9 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 0.012821 0.528662 -0.340155 chr5-710 chr5 139510770 139510926 + 30.5 NA intron (NM_001163316, intron 1 of 8) intron (NM_001163316, intron 1 of 8) 3710 NM_001163316 67604 Mm.270137 NM_001163316 ENSMUSG00000025858 Get4 1110007L15Rik|AW412535|Cee golgi to ER traffic protein 4 homolog (S. cerevisiae) 0.019231 0.528662 -1.409598 chr1-585 chr1 13252900 13253056 + 30.5 NA intron (NM_001077695, intron 2 of 21) intron (NM_001077695, intron 2 of 21) 106319 NM_001077695 17978 Mm.2537 NM_001077695 ENSMUSG00000005886 Ncoa2 9530095N19|D1Ertd433e|GRIP-1|Grip1|KAT13C|SRC-2|TIF-2|TIF2|bHLHe75 nuclear receptor coactivator 2 0.012821 0.496815 -5.585293 chr2-510 chr2 50711456 50711612 + 30.5 NA Intergenic Intergenic -20158 NR_033595 227885 Mm.301654 NR_033595 Gm13498 OTTMUSG00000012426 predicted gene 13498 0.012821 0.458599 -7.707565 chr6-388 chr6 87844831 87844987 + 30.5 NA Intergenic Intergenic -8671 NM_017477 54161 Mm.258785 NM_017477 ENSMUSG00000030058 Copg AU019265|BC056168|Copg1|D6Ertd71e|D6Wsu16e|MGC66965 coatomer protein complex, subunit gamma 0.019231 0.477707 -1.478053 chr8-361 chr8 60663697 60663853 + 30.5 NA Intergenic Intergenic -118578 NM_144731 108150 Mm.62886 NM_001167981 ENSMUSG00000031608 Galnt7 AI225872 UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 0.006410 0.388535 -1.362951 chr2-579 chr2 119865280 119865436 + 30.5 NA intron (NM_177845, intron 14 of 19) intron (NM_177845, intron 14 of 19) -19342 NM_133838 98878 Mm.132226 NM_133838 ENSMUSG00000027293 Ehd4 2210022F10Rik|AI197390|AI846352|AV006278|Past2 EH-domain containing 4 0.012821 0.541401 -2.523620 chr7-327 chr7 65023927 65024083 + 30.5 NA intron (NM_183087, intron 1 of 9) intron (NM_183087, intron 1 of 9) 11473 NM_183087 70638 Mm.441986 NM_183087 ENSMUSG00000030518 Fam189a1 5730507A09Rik|AW047451 family with sequence similarity 189, member A1 0.025641 0.484076 1.672112 chr16-235 chr16 18883149 18883305 + 30.5 NA 3' UTR (NM_010435, exon 25 of 25) 3' UTR (NM_010435, exon 25 of 25) 92915 NM_010435 15260 Mm.453041 NM_010435 ENSMUSG00000022702 Hira AA138857|D16Ertd95e|N28177|Tuple1 histone cell cycle regulation defective homolog A (S. cerevisiae) 0.006410 0.585987 0.907096 chr12-485 chr12 103131537 103131693 + 30.5 NA Intergenic Intergenic 13095 NM_001142937 64113 Mm.291222 NM_001142937 ENSMUSG00000041716 Moap1 AA987038|MAP-1|PNMA4 modulator of apoptosis 1 0.025641 0.560510 -4.986520 chr17-345 chr17 36502199 36502355 + 30.5 NA Intergenic Intergenic -3905 NM_146077 224762 Mm.213417 NM_146077 ENSMUSG00000058063 Trim31 BC026666|HCG1|HCGI|MGC37625|RNF tripartite motif-containing 31 0.000000 0.401274 -3.652937 chr6-409 chr6 98485885 98486041 + 30.5 NA Intergenic Intergenic -177746 NM_001128092 330390 Mm.149808 XM_284224 Gm765 - predicted gene 765 0.012821 0.452229 0.621260 chr16-240 chr16 23043013 23043169 + 30.5 NA promoter-TSS (NM_145480) promoter-TSS (NM_145480) -27 NM_145480 106344 Mm.386835 NM_145480 ENSMUSG00000022881 Rfc4 A1|AI894123|AU040575|RFC37 replication factor C (activator 1) 4 0.134615 0.662420 -6.530632 chr11-553 chr11 84342171 84342327 + 30.5 NA promoter-TSS (NM_008498) promoter-TSS (NM_008498) -520 NM_008498 16869 Mm.4965 NM_008498 ENSMUSG00000018698 Lhx1 Lim1 LIM homeobox protein 1 0.076923 0.617834 -11.217628 chr15-276 chr15 79993058 79993214 + 30.5 NA Intergenic Intergenic -7839 NM_010795 17309 Mm.299693 XM_001473411 ENSMUSG00000042428 Mgat3 1110038J12Rik|AI848272|GnT-III mannoside acetylglucosaminyltransferase 3 0.032051 0.528662 -5.014904 chr13-312 chr13 62967383 62967539 + 30.5 NA Intergenic Intergenic -57095 NM_028079 72061 Mm.188105 NM_028079 ENSMUSG00000021458 2010111I01Rik 2300006M17Rik|Aopep RIKEN cDNA 2010111I01 gene 0.006410 0.452229 -1.590160 chr5-593 chr5 52096350 52096506 + 30.5 NA Intergenic B4A|SINE|B4 -254259 NM_008904 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|PGC-1|PGC-1v|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 0.012821 0.458599 -2.106986 chr9-543 chr9 122539434 122539590 + 30.5 NA Intergenic Intergenic 7939 NR_029819 387156 NR_029819 Mir138-1 Mirn138|Mirn138-1 microRNA 138-1 0.006410 0.515924 5.678261 chr8-425 chr8 131480912 131481068 + 30.5 NA Intergenic Intergenic -90753 NM_010578 16412 Mm.263396 NM_010578 ENSMUSG00000025809 Itgb1 4633401G24Rik|AA409975|AA960159|CD29|Fnrb|gpIIa integrin beta 1 (fibronectin receptor beta) 0.006410 0.509554 4.615115 chr4-496 chr4 83602469 83602625 + 30.5 NA Intergenic Intergenic 543770 NM_172870 242509 Mm.190774 NM_172870 ENSMUSG00000028487 Bnc2 5031434M05Rik|8430420F16Rik|MGC124423|MGC124424 basonuclin 2 0.006410 0.477707 -7.444757 chr4-543 chr4 122583128 122583268 + 30.5 NA Intergenic Intergenic -24269 NM_007559 12164 Mm.439764 NM_007559 ENSMUSG00000002384 Bmp8b Op3 bone morphogenetic protein 8b 0.035714 0.631206 -3.647378 chr2-529 chr2 65895795 65895951 + 30.5 NA intron (NM_015736, intron 6 of 10) intron (NM_015736, intron 6 of 10) 29759 NM_015736 14425 Mm.439760 XM_885274 ENSMUSG00000026994 Galnt3 - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 0.006410 0.343949 -7.989966 chr6-338 chr6 33119862 33120018 + 30.5 NA Intergenic Intergenic -59367 NM_009148 20336 Mm.265512 NM_009148 ENSMUSG00000029763 Exoc4 C78892|Sec8|Sec8l1 exocyst complex component 4 0.038462 0.496815 -2.296396 chr6-412 chr6 99303201 99303357 + 30.5 NA Intergenic Intergenic -174798 NM_053202 108655 Mm.461753 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 0.032051 0.528662 2.302582 chr13-303 chr13 54719039 54719195 + 30.5 NA intron (NM_001033364, intron 1 of 31) intron (NM_001033364, intron 1 of 31) 8033 NM_001033364 268663 Mm.315382 NM_001033364 ENSMUSG00000034918 Cdhr2 Gm624|PC-LKC|Pcdh24 cadherin-related family member 2 0.012821 0.445860 2.229294 chr5-564 chr5 23030681 23030837 + 30.5 NA intron (NM_009274, intron 10 of 14) intron (NM_009274, intron 10 of 14) 84507 NM_026984 69188 Mm.403814 XM_893956 Mll5 1810033J14Rik|9530077A04Rik|D230038D11Rik|FLJ10078|Kmt2E myeloid/lymphoid or mixed-lineage leukemia 5 0.000000 0.484076 -4.815064 chr4-558 chr4 134625126 134625282 + 30.5 NA promoter-TSS (NM_016799) promoter-TSS (NM_016799) 86 NM_016799 51796 Mm.1963 NM_001130477 ENSMUSG00000028809 Srrm1 AA407769|POP101|Srm160 serine/arginine repetitive matrix 1 0.147436 0.700637 -4.349664 chr2-611 chr2 155871752 155871908 + 30.5 NA promoter-TSS (NM_133242) promoter-TSS (NM_133242) -149 NM_133242 170791 Mm.436932 NM_133242 ENSMUSG00000027620 Rbm39 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper RNA binding motif protein 39 0.070513 0.592357 1.511212 chr13-276 chr13 28726140 28726296 + 30.5 NA Intergenic Intergenic 234929 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.000000 0.420382 -3.862084 chr9-461 chr9 58661946 58662102 + 30.5 NA Intergenic Intergenic 40376 NM_001081192 330953 Mm.151967 NM_001081192 ENSMUSG00000032338 Hcn4 Bcng3|Hcn3 hyperpolarization-activated, cyclic nucleotide-gated K+ 4 0.012821 0.573248 -6.778183 chr9-539 chr9 121443842 121443998 + 30.5 NA intron (NM_026915, intron 1 of 5) intron (NM_026915, intron 1 of 5) 46344 NM_026915 69032 Mm.33351 NM_026915 ENSMUSG00000032530 Lyzl4 1810009N24Rik|AI504271|Lyc4 lysozyme-like 4 0.012821 0.535032 -3.798459 chr2-560 chr2 92750565 92750721 + 30.5 NA intron (NM_030725, intron 4 of 5) intron (NM_030725, intron 4 of 5) 34704 NM_030725 80976 Mm.33490 NM_030725 ENSMUSG00000027220 Syt13 5730409J20Rik|AI549909|mKIAA1427 synaptotagmin XIII 0.006410 0.541401 -1.919505 chr5-638 chr5 97589193 97589349 + 30.5 NA Intergenic Intergenic 43361 NM_001033191 97243 Mm.11746 NM_001033191 ENSMUSG00000046000 Naa11 Ard1b|Ard2|C80008 N(alpha)-acetyltransferase 11, NatA catalytic subunit 0.000000 0.394904 -2.101136 chr5-718 chr5 140745446 140745602 + 30.5 NA Intergenic Intergenic -12558 NM_021528 59031 Mm.28934 NM_021528 ENSMUSG00000036599 Chst12 AI595374|C4S-2|C4ST2 carbohydrate sulfotransferase 12 0.019231 0.643312 4.208591 chr2-603 chr2 146946509 146946665 + 30.5 NA intron (NR_030769, intron 1 of 5) intron (NR_030769, intron 1 of 5) -68744 NM_010919 18088 Mm.330639 XM_001481082 ENSMUSG00000027434 Nkx2-2 Nkx-2.2|Nkx2.2|tinman NK2 transcription factor related, locus 2 (Drosophila) 0.006410 0.509554 -3.789027 chr1-742 chr1 160418687 160418843 + 30.5 NA intron (NM_007495, intron 11 of 22) intron (NM_007495, intron 11 of 22) 76464 NR_030441 735253 NR_030441 Mir488 Mirn488|mmu-mir-488 microRNA 488 0.000000 0.464968 -4.506293 chr19-163 chr19 31148833 31148989 + 30.5 NA promoter-TSS (NM_031249) promoter-TSS (NM_031249) 74 NM_031249 83410 Mm.22031 NM_031249 ENSMUSG00000053536 Cstf2t 64kDa|C77975|tCstF-64|tauCstF-64 cleavage stimulation factor, 3' pre-RNA subunit 2, tau 0.076923 0.541401 -3.439675 chr6-377 chr6 73000264 73000420 + 30.5 NA intron (NM_001164669, intron 56 of 76) intron (NM_001164669, intron 56 of 76) -112085 NM_001190327 19240 Mm.436717 NM_001039392 ENSMUSG00000079523 Tmsb10 Ptmb10|Tb10 thymosin, beta 10 0.032051 0.509554 -4.289730 chr9-421 chr9 22756114 22756270 + 30.5 NA Intergenic Intergenic -217285 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator 0.044872 0.458599 -6.725518 chr2-572 chr2 115228506 115228662 + 30.5 NA Intergenic Intergenic -24942 NR_030712 100043232 Mm.240112 XM_001479789 3110099E03Rik - RIKEN cDNA 3110099E03 gene 0.000000 0.350318 -0.636472 chr10-427 chr10 122970832 122970988 + 30.5 NA intron (NM_182807, intron 2 of 5) intron (NM_182807, intron 2 of 5) 303775 NM_182807 268354 Mm.51939 NM_182807 ENSMUSG00000044071 Fam19a2 6330575M02|AI851790|FAM19A2 TAFA-2|TAFA2|Tafa-2 family with sequence similarity 19, member A2 0.000000 0.484076 -1.322489 chr12-464 chr12 87615582 87615738 + 30.5 NA promoter-TSS (NM_144524) promoter-TSS (NM_144524) -97 NM_144524 68737 Mm.63979 NM_144524 ENSMUSG00000021257 Angel1 1110030H02Rik|KIAA0759|mKIAA0759 angel homolog 1 (Drosophila) 0.064103 0.643312 -7.475280 chr1-800 chr1 194831118 194831164 + 30.5 NA promoter-TSS (NM_145415) promoter-TSS (NM_145415) -166 NM_145415 215193 Mm.397506 NM_145415 ENSMUSG00000016181 AA408296 AW045375|Def expressed sequence AA408296 0.021739 0.595745 6.445794 chr12-420 chr12 40460948 40461104 + 30.5 NA Intergenic L1MD2|LINE|L1 86773 NM_007487 11861 Mm.12723 NM_001039515 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A 0.025641 0.490446 3.149482 chr12-450 chr12 80863642 80863798 + 30.5 NA Intergenic Intergenic 168133 NM_007564 12192 Mm.235132 NM_007564 ENSMUSG00000021127 Zfp36l1 AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1 zinc finger protein 36, C3H type-like 1 0.012821 0.477707 -5.457237 chr6-429 chr6 120561996 120562152 + 30.5 NA Intergenic Intergenic -65156 NM_144815 214932 Mm.255322 NM_144815 ENSMUSG00000058979 Cecr5 A930002G03Rik|MGC25951 cat eye syndrome chromosome region, candidate 5 homolog (human) 0.006410 0.484076 -5.626531 chr10-352 chr10 62783996 62784152 + 30.5 NA intron (NM_013888, intron 1 of 4) intron (NM_013888, intron 1 of 4) 2155 NM_013888 30045 Mm.32550 NM_013888 ENSMUSG00000036764 Dnajc12 Jdp1|mJDP1 DnaJ (Hsp40) homolog, subfamily C, member 12 0.019231 0.471338 -4.783823 chr12-402 chr12 27024280 27024436 + 30.5 NA Intergenic MTE2a|LTR|MaLR 18362 NM_021384 58185 Mm.24045 NM_021384 ENSMUSG00000020641 Rsad2 2510004L01Rik|Vig1|cig5 radical S-adenosyl methionine domain containing 2 0.006410 0.464968 -3.345862 chr1-712 chr1 130393624 130393780 + 30.5 NA Intergenic ID_B1|SINE|B4 26143 NM_009911 12767 Mm.1401 XM_001478244 ENSMUSG00000045382 Cxcr4 CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r chemokine (C-X-C motif) receptor 4 0.012821 0.477707 -4.723426 chr17-370 chr17 56901652 56901808 + 30.5 NA intron (NM_009778, intron 23 of 40) intron (NM_009778, intron 23 of 40) 11741 NM_009778 12266 Mm.19131 NM_009778 ENSMUSG00000024164 C3 AI255234|ASP|Plp complement component 3 0.006410 0.528662 -1.282738 chr10-385 chr10 83066086 83066242 + 30.5 NA intron (NM_145220, intron 2 of 20) intron (NM_145220, intron 2 of 20) 12299 NM_145220 216190 Mm.282985 NM_145220 ENSMUSG00000020263 Appl2 Dip3b adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 0.006410 0.433121 1.502820 chr4-476 chr4 49526489 49526645 + 30.5 NA intron (NM_007519, intron 1 of 3) intron (NM_007519, intron 1 of 3) 1091 NM_007519 12012 Mm.2859 NM_007519 ENSMUSG00000039653 Baat AI118337|AI158864|BAT bile acid-Coenzyme A: amino acid N-acyltransferase 0.000000 0.343949 -3.127424 chr6-419 chr6 108625185 108625341 + 30.5 NA Intergenic CpG -1142 NM_011498 20893 Mm.2436 NM_011498 ENSMUSG00000030103 Bhlhe40 Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14 basic helix-loop-helix family, member e40 0.134615 0.738854 -5.856678 chr11-488 chr11 18508318 18508474 + 30.5 NA Intergenic Intergenic 410576 NM_010789 17268 Mm.445192 NM_001193271 ENSMUSG00000020160 Meis1 C530044H18Rik|Evi8 Meis homeobox 1 0.006410 0.369427 0.666867 chr1-684 chr1 93061756 93061912 + 30.5 NA Intergenic Intergenic -18890 NM_026454 67921 Mm.337238 NM_026454 Ube2f 2510010F15Rik|AI851109 ubiquitin-conjugating enzyme E2F (putative) 0.000000 0.382166 -4.958932 chr1-804 chr1 196717593 196717749 + 30.5 NA promoter-TSS (NR_015566) promoter-TSS (NR_015566) -451 NR_015566 320977 Mm.99905 NR_015566 A330023F24Rik C030002C11Rik RIKEN cDNA A330023F24 gene 0.012821 0.515924 -6.298096 chr14-169 chr14 56414057 56414213 + 30.5 NA intron (NM_009376, intron 14 of 25) intron (NM_009376, intron 14 of 25) 35955 NM_009376 21821 Mm.4653 NM_009376 ENSMUSG00000040040 Ift88 AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris intraflagellar transport 88 homolog (Chlamydomonas) 0.025641 0.535032 -5.342816 chr5-676 chr5 124088524 124088680 + 30.5 NA Intergenic Intergenic 37525 NM_030701 80885 Mm.440567 NM_030701 ENSMUSG00000045502 Niacr1 Gpr109a|Gpr109b|HM74|PUMA-G|Pumag|mHM74b niacin receptor 1 0.012821 0.433121 -2.930143 chr12-475 chr12 98925542 98925698 + 30.5 NA intron (NM_029911, intron 1 of 6) intron (NM_029911, intron 1 of 6) 53370 NM_029911 72258 Mm.196158 NM_029911 ENSMUSG00000033854 Kcnk10 1700024D23Rik|3010005K24Rik|Trek2 potassium channel, subfamily K, member 10 0.012821 0.420382 -4.393646 chr8-345 chr8 35232581 35232737 + 30.5 NA intron (NM_001167921, intron 6 of 7) intron (NM_001167921, intron 6 of 7) 34386 NM_001167922 68153 Mm.286104 NM_001167921 ENSMUSG00000031585 Gtf2e2 34kDa|AI462509|C330006J08Rik general transcription factor II E, polypeptide 2 (beta subunit) 0.012821 0.503185 -7.014261 chr1-656 chr1 74750008 74750164 + 30.5 NA Intergenic Intergenic 24861 NM_009518 22409 Mm.5130 NM_009518 ENSMUSG00000026167 Wnt10a - wingless related MMTV integration site 10a 0.025641 0.535032 -3.291198 chr9-507 chr9 102415773 102415929 + 30.5 NA Intergenic Intergenic 53451 NM_024291 16716 Mm.101692 NM_024291 ENSMUSG00000035606 Ky CD1|D9Mgc44e|ky kyphoscoliosis peptidase 0.012821 0.407643 5.342546 chr7-386 chr7 136833110 136833266 + 30.5 NA intron (NM_008598, intron 2 of 4) intron (NM_008598, intron 2 of 4) 100235 NM_008598 17314 Mm.440219 NM_008598 ENSMUSG00000054612 Mgmt AGT|AI267024|Agat|MGC107020 O-6-methylguanine-DNA methyltransferase 0.019231 0.528662 -4.051330 chr3-359 chr3 20153623 20153779 + 30.5 NA intron (NM_007752, intron 1 of 18) intron (NM_007752, intron 1 of 18) 4497 NM_007752 12870 Mm.13787 NM_001042611 ENSMUSG00000003617 Cp D3Ertd555e ceruloplasmin 0.000000 0.414013 -7.286401 chr5-733 chr5 148999686 148999842 + 30.5 NA Intergenic Intergenic -52424 NR_028285 70138 Mm.417834 XM_001473363 2210417A02Rik AV081004 RIKEN cDNA 2210417A02 gene 0.025641 0.535032 -3.334166 chr18-242 chr18 39381650 39381806 + 30.5 NA intron (NM_175164, intron 17 of 22) intron (NM_175164, intron 17 of 22) 231491 NM_008173 14815 Mm.129481 NM_008173 ENSMUSG00000024431 Nr3c1 GR|Grl-1|Grl1 nuclear receptor subfamily 3, group C, member 1 0.019231 0.407643 0.780477 chr11-479 chr11 4290944 4291100 + 30.5 NA intron (NM_029458, intron 10 of 10) intron (NM_029458, intron 10 of 10) 50063 NM_029458 75828 Mm.159592 NM_029458 ENSMUSG00000020419 Hormad2 4930529M09Rik HORMA domain containing 2 0.012821 0.484076 -1.789742 chr12-461 chr12 87154139 87154295 + 30.5 NA intron (NM_027405, intron 5 of 9) intron (NM_027405, intron 5 of 9) 23237 NM_027405 70373 Mm.252967 NM_027405 ENSMUSG00000021254 1700020O03Rik 4732487G21Rik|A630090I05Rik RIKEN cDNA 1700020O03 gene 0.012821 0.484076 1.497113 chr1-653 chr1 74594871 74595027 + 30.5 NA promoter-TSS (NM_001014974) promoter-TSS (NM_001014974) -11 NM_001014974 67534 Mm.260714 NM_001014974 ENSMUSG00000033257 Ttll4 4632407P03Rik|AI451681|mKIAA0173 tubulin tyrosine ligase-like family, member 4 0.089744 0.675159 -4.395902 chr9-432 chr9 41756182 41756338 + 30.5 NA intron (NM_011436, intron 27 of 47) intron (NM_011436, intron 27 of 47) 119024 NM_011436 20660 Mm.121920 NM_011436 ENSMUSG00000049313 Sorl1 2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA sortilin-related receptor, LDLR class A repeats-containing 0.025641 0.496815 -4.134992 chr1-669 chr1 82003665 82003821 + 30.5 NA Intergenic Intergenic 166720 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.012821 0.452229 -1.635144 chr12-473 chr12 93295750 93295906 + 30.5 NA Intergenic RLTR3_Mm-int|LTR|ERVK -1041114 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.025641 0.445860 -7.220707 chr10-425 chr10 120248647 120248803 + 30.5 NA intron (NM_177092, intron 4 of 6) intron (NM_177092, intron 4 of 6) 53306 NM_177092 320183 Mm.169755 NM_177092 ENSMUSG00000051236 Msrb3 D430026P16Rik|I-8-23|MsrB2 methionine sulfoxide reductase B3 0.019231 0.452229 -5.125227 chr2-551 chr2 83474018 83474174 + 30.5 NA Intergenic Intergenic 28680 NM_026934 69082 Mm.27804 NM_026934 ENSMUSG00000027091 Zc3h15 1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4 zinc finger CCCH-type containing 15 0.032051 0.458599 -7.238628 chr2-538 chr2 72417350 72417506 + 30.5 NA Intergenic Intergenic 140371 NM_025866 66953 Mm.270676 NM_025866 ENSMUSG00000055612 Cdca7 2310021G01Rik|AU044109|JPO1 cell division cycle associated 7 0.000000 0.407643 0.652260 chr6-364 chr6 55183302 55183458 + 30.5 NA intron (NM_001142781, intron 5 of 17) intron (NM_001142781, intron 5 of 17) 50420 NM_001142781 330323 Mm.268997 NM_001142781 ENSMUSG00000038022 Fam188b C330043M08Rik|Gm1406 family with sequence similarity 188, member B 0.006410 0.484076 -6.707451 chr4-470 chr4 44622592 44622748 + 30.5 NA intron (NM_008782, intron 7 of 9) intron (NM_008782, intron 7 of 9) 108870 NM_008782 18507 Mm.439659 NM_008782 ENSMUSG00000014030 Pax5 BSAP|EBB-1|KLP|Pax-5 paired box gene 5 0.025641 0.579618 -3.700637 chr18-241 chr18 39364918 39365074 + 30.5 NA intron (NM_175164, intron 14 of 22) intron (NM_175164, intron 14 of 22) 245878 NM_175164 71302 Mm.329396 NM_175164 ENSMUSG00000036452 Arhgap26 1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621 Rho GTPase activating protein 26 0.006410 0.407643 1.775647 chr10-328 chr10 19566753 19566909 + 30.5 NA intron (NM_001161825, intron 7 of 8) intron (NM_001161825, intron 7 of 8) -25956 NM_029529 76157 Mm.477281 NM_029529 ENSMUSG00000050473 Slc35d3 6230421J19Rik|Frcl1 solute carrier family 35, member D3 0.012821 0.477707 -1.444589 chr7-379 chr7 129569352 129569508 + 30.5 NA Intergenic Intergenic 186420 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|MGC47139|mKIAA1351 WD repeat domain 11 0.006410 0.503185 -8.572802 chr1-755 chr1 166319736 166319892 + 30.5 NA Intergenic Intergenic -24784 NM_009721 11931 Mm.4550 NM_009721 ENSMUSG00000026576 Atp1b1 Atpb|Atpb-1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.000000 0.433121 -8.478024 chr5-697 chr5 135972636 135972792 + 30.5 NA Intergenic RSINE1|SINE|B4 -1126 NM_008898 18984 Mm.3863 NM_008898 ENSMUSG00000005514 Por 4933424M13Rik|CPR|CYPOR P450 (cytochrome) oxidoreductase 0.019231 0.439490 -4.774963 chr11-599 chr11 105995972 105996128 + 30.5 NA intron (NM_028126, intron 2 of 10) intron (NM_028126, intron 2 of 10) 13588 NM_028126 72149 Mm.403722 NM_028126 ENSMUSG00000069631 Strada 2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik STE20-related kinase adaptor alpha 0.000000 0.445860 -3.763922 chr3-444 chr3 139537113 139537269 + 30.5 NA intron (NM_198659, intron 12 of 13) intron (NM_198659, intron 12 of 13) 393912 NM_198659 381476 Mm.188334 NM_198659 ENSMUSG00000047940 B930007M17Rik Gm1017 RIKEN cDNA B930007M17 gene 0.019231 0.433121 -0.489062 chr1-615 chr1 45780358 45780514 + 30.5 NA Intergenic Intergenic 40390 NM_028599 73674 Mm.270376 NM_028599 ENSMUSG00000025995 Wdr75 1300003A18Rik|2410118I19Rik|C77608|FLJ12545|MGC143988 WD repeat domain 75 0.006410 0.433121 -2.190879 chr11-531 chr11 68889916 68890072 + 30.5 NA TTS (NM_025838) TTS (NM_025838) 2991 NM_028336 66910 Mm.33964 NM_025838 ENSMUSG00000020895 Tmem107 1110004B13Rik|2810049P21Rik transmembrane protein 107 0.000000 0.426752 -4.661454 chr1-749 chr1 162095644 162095800 + 30.5 NA intron (NM_001038621, intron 2 of 8) intron (NM_001038621, intron 2 of 8) -46268 NM_009786 12301 Mm.10702 NM_009786 ENSMUSG00000014226 Cacybp - calcyclin binding protein 0.000000 0.401274 4.998736 chr6-431 chr6 121105036 121105192 + 30.5 NA Intergenic B3|SINE|B2 -44171 NM_028730 74043 Mm.480690 NM_028730 ENSMUSG00000067825 Pex26 4632428M11Rik|AI853212 peroxisomal biogenesis factor 26 0.000000 0.528662 -7.353360 chr1-631 chr1 62718409 62718565 + 30.5 NA intron (NM_001077405, intron 13 of 15) intron (NM_001077405, intron 13 of 15) 80895 NM_001077405 18187 Mm.266341 NM_001077403 ENSMUSG00000025969 Nrp2 1110048P06Rik|Np-2|Np2|Npn-2|Npn2 neuropilin 2 0.019231 0.547771 -1.174650 chr5-607 chr5 66696641 66696797 + 30.5 NA intron (NM_009686, intron 5 of 16) intron (NM_009686, intron 5 of 16) 157460 NM_027602 70918 Mm.23166 NM_027602 ENSMUSG00000029206 Nsun7 4921525L17Rik|MGC141647|MGC141648 NOL1/NOP2/Sun domain family, member 7 0.006410 0.509554 1.397716 chrX-61 chrX 89192026 89192182 + 30.5 NA Intergenic Intergenic -339813 NM_173783 215641 Mm.327999 NM_173783 ENSMUSG00000067649 Mageb18 B430216B18Rik melanoma antigen family B, 18 0.000000 0.414013 -1.906015 chr4-484 chr4 69938627 69938783 + 30.5 NA intron (NM_172694, intron 3 of 5) intron (NM_172694, intron 3 of 5) -41977 NM_145990 214444 Mm.379344 NM_145990 ENSMUSG00000039298 Cdk5rap2 2900018K03Rik|MGC38528|an|mKIAA1633 CDK5 regulatory subunit associated protein 2 0.006410 0.484076 3.106291 chr5-631 chr5 93441729 93441885 + 30.5 NA intron (NM_181728, intron 2 of 9) intron (NM_181728, intron 2 of 9) -3330 NM_019494 56066 Mm.131723 XM_903598 ENSMUSG00000060183 Cxcl11 CXC11|H174|I-TAC|IP9|ITAC|SCYB9B|Scyb11|b-R1|betaR1 chemokine (C-X-C motif) ligand 11 0.019231 0.541401 1.890731 chrX-66 chrX 100873532 100873688 + 30.5 NA 5' UTR (NM_175358, exon 1 of 12) 5' UTR (NM_175358, exon 1 of 12) 173 NM_175358 108672 Mm.30574 NM_175358 ENSMUSG00000033906 Zdhhc15 6030457O13Rik zinc finger, DHHC domain containing 15 0.121795 0.751592 -5.232639 chr12-457 chr12 85839925 85840081 + 30.5 NA intron (NM_178065, intron 2 of 19) intron (NM_178065, intron 2 of 19) 19986 NM_178065 68497 Mm.24446 NM_178065 ENSMUSG00000042350 1110018G07Rik AI649076|AW610792|Kiaa0317|mKIAA0317 RIKEN cDNA 1110018G07 gene 0.012821 0.407643 -0.660600 chr1-616 chr1 46912213 46912369 + 30.5 NA Intergenic MTD|LTR|MaLR -114236 NM_172653 227059 Mm.233889 NM_172653 ENSMUSG00000025986 Slc39a10 2900042E17Rik|5430433I10|mKIAA1265 solute carrier family 39 (zinc transporter), member 10 0.000000 0.445860 -4.746119 chr10-333 chr10 21479593 21479749 + 30.5 NA Intergenic Intergenic -91928 NM_001161845 20393 Mm.28405 NM_001161845 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 0.025641 0.515924 0.469942 chr4-691 chr4 82356463 82356619 + 25.4 NA promoter-TSS (NM_009887) promoter-TSS (NM_009887) -159 NM_009887 12622 Mm.6780 NM_009887 ENSMUSG00000038192 Cer1 Cerl|Cerr1|cer-1 cerberus 1 homolog (Xenopus laevis) 0.012821 0.484076 2.226773 chr5-869 chr5 97201634 97201790 + 25.4 NA Intergenic Intergenic -36278 NM_080708 140780 Mm.480237 NM_080708 ENSMUSG00000034663 Bmp2k 4933417M22Rik|AA673486|AV128808|BIKE BMP2 inducible kinase 0.012821 0.382166 -3.704428 chr7-476 chr7 81414615 81414771 + 25.4 NA intron (NM_172904, intron 10 of 12) intron (NM_172904, intron 10 of 12) 11265 NR_035501 100316717 NR_035501 Mir1839 mmu-mir-1839 microRNA mir-1839 0.006410 0.547771 1.328212 chr7-613 chr7 145108900 145109056 + 25.4 NA Intergenic Intergenic -1320 NM_145379 211577 Mm.215151 NM_145379 ENSMUSG00000031070 Mrgprf BC019711|MGC18825|MrgF MAS-related GPR, member F 0.012821 0.643312 -3.501425 chr2-783 chr2 83619206 83619362 + 25.4 NA intron (NM_175514, intron 1 of 7) intron (NM_175514, intron 1 of 7) 5718 NM_175514 241520 Mm.436122 NM_175514 ENSMUSG00000048388 Fam171b D430039N05Rik family with sequence similarity 171, member B 0.012821 0.407643 -4.769458 chr4-607 chr4 6466602 6466758 + 25.4 NA Intergenic L1VL4|LINE|L1 -85262 NM_010945 18201 Mm.3059 NM_010945 ENSMUSG00000028245 Nsmaf AA959567|C630007J05|Fan neutral sphingomyelinase (N-SMase) activation associated factor 0.000000 0.382166 -2.681479 chr2-928 chr2 180163689 180163845 + 25.4 NA Intergenic Intergenic -8500 NM_001081171 16776 Mm.4339 NM_001081171 ENSMUSG00000015647 Lama5 AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533 laminin, alpha 5 0.012821 0.566879 -8.050415 chr6-555 chr6 84613864 84614020 + 25.4 NA intron (NM_177077, intron 20 of 21) intron (NM_177077, intron 20 of 21) -54376 NM_001177713 232174 Mm.255246 NM_001177713 ENSMUSG00000063415 Cyp26b1 CP26|P450RAI-2 cytochrome P450, family 26, subfamily b, polypeptide 1 0.006410 0.471338 -0.360928 chr5-744 chr5 9368366 9368522 + 25.4 NA intron (NM_172706, intron 1 of 21) intron (NM_172706, intron 1 of 21) -13265 NR_030537 100124492 NR_030537 Mir879 Mirn879|mmu-mir-879 microRNA 879 0.006410 0.388535 -4.763051 chr17-413 chr17 12458122 12458278 + 25.4 NA intron (NM_013667, intron 8 of 10) intron (NM_013667, intron 8 of 10) 30654 NM_013667 20518 Mm.17322 NM_013667 ENSMUSG00000040966 Slc22a2 MGC18339|Oct2|Orct2 solute carrier family 22 (organic cation transporter), member 2 0.032051 0.541401 -5.173652 chr3-535 chr3 84474530 84474686 + 25.4 NA Intergenic L1ME3|LINE|L1 91748 NM_001033301 229474 Mm.481803 NM_001033301 ENSMUSG00000041842 Fhdc1 6330505N24Rik|Gm126 FH2 domain containing 1 0.012821 0.433121 -1.638532 chr1-954 chr1 80207950 80208106 + 25.4 NA intron (NM_016716, intron 1 of 15) intron (NM_016716, intron 1 of 15) 11426 NM_016716 26554 Mm.12665 NM_016716 ENSMUSG00000004364 Cul3 AI467304|AW146203|mKIAA0617 cullin 3 0.006410 0.343949 -2.521053 chr6-538 chr6 71192547 71192703 + 25.4 NA promoter-TSS (NM_009762) promoter-TSS (NM_009762) -765 NM_009762 12180 Mm.440892 NM_001160127 ENSMUSG00000055027 Smyd1 4632404M21Rik|Bop|C78565|Zmynd18 SET and MYND domain containing 1 0.019231 0.522293 -5.537307 chr5-966 chr5 129943679 129943835 + 25.4 NA Intergenic Intergenic 41039 NM_172462 22648 Mm.135067 NM_172462 ENSMUSG00000051034 Zfp11 6720465D24|Krox-6|Zfp-11 zinc finger protein 11 0.019231 0.490446 -2.582341 chr11-861 chr11 102282380 102282536 + 25.4 NA exon (NM_010575, exon 7 of 30) exon (NM_010575, exon 7 of 30) 3515 NM_010575 16399 Mm.26646 NM_010575 ENSMUSG00000034664 Itga2b AI172977|CD41|CD41B|GpIIb|alphaIIb integrin alpha 2b 0.044872 0.554140 4.130171 chr10-537 chr10 87080592 87080748 + 25.4 NA Intergenic Intergenic 129077 NM_008777 18478 Mm.263539 NM_008777 ENSMUSG00000020051 Pah AW106920 phenylalanine hydroxylase 0.000000 0.369427 -2.054266 chr3-480 chr3 23538395 23538551 + 25.4 NA Intergenic L1_Mus2|LINE|L1 1096460 NR_004439 19784 NR_004439 Rprl2 RPRH2|RPRH3|Rmrp3 ribonuclease P RNA-like 2 0.000000 0.369427 1.985920 chr5-893 chr5 108479168 108479324 + 25.4 NA Intergenic Intergenic -29952 NM_026106 13486 Mm.303534 NM_026106 ENSMUSG00000029265 Dr1 1700121L09Rik|Dr1l|NC2|NC2beta down-regulator of transcription 1 0.019231 0.445860 -7.144235 chr19-258 chr19 53997818 53997974 + 25.4 NA promoter-TSS (NM_019658) promoter-TSS (NM_019658) 43 NR_027828 66360 Mm.375091 XM_001480596 Ncrna00081 2310002J21Rik|2610002B11Rik|4930560M04Rik non-protein coding RNA 81 0.083333 0.624204 -4.317318 chr4-618 chr4 12556809 12556965 + 25.4 NA Intergenic Intergenic -277096 NM_173746 208820 Mm.12057 NM_001171801 Gm11818 C130086A10|OTTMUSG00000004461|triqk predicted gene 11818 0.000000 0.458599 -5.253177 chr6-566 chr6 88442822 88442978 + 25.4 NA intron (NM_019685, intron 3 of 10) intron (NM_019685, intron 3 of 10) 11837 NM_019685 56505 Mm.42195 NM_019685 ENSMUSG00000030079 Ruvbl1 2510009G06Rik|Pontin52|Tip49a RuvB-like protein 1 0.000000 0.509554 1.813433 chr10-512 chr10 79702185 79702341 + 25.4 NA Intergenic Intergenic -2685 NM_011789 23805 Mm.57247 NM_011789 ENSMUSG00000020135 Apc2 AI852447|APCL|R75424 adenomatosis polyposis coli 2 0.076923 0.707006 -3.179567 chr16-290 chr16 5169680 5169836 + 25.4 NA intron (NM_027446, intron 1 of 7) intron (NM_027446, intron 1 of 7) 1519 NM_027446 70511 Mm.45780 NM_027446 ENSMUSG00000022544 Fam86 5730409G15Rik family with sequence similarity 86 0.032051 0.560510 -2.473671 chr13-434 chr13 60106981 60107137 + 25.4 NA Intergenic (CACAG)n|Simple_repeat|Simple_repeat 80099 NM_008086 14451 Mm.22701 NM_008086 ENSMUSG00000052957 Gas1 AW554192|Gas-1 growth arrest specific 1 0.000000 0.598726 0.652260 chr2-799 chr2 93140196 93140352 + 25.4 NA Intergenic Intergenic -4948 NM_183180 241556 Mm.458358 XM_001478824 ENSMUSG00000027217 Tspan18 2610042G18Rik|6720430O15|BB226562 tetraspanin 18 0.012821 0.528662 0.152513 chr16-355 chr16 55954572 55954728 + 25.4 NA promoter-TSS (NM_001024622) promoter-TSS (NM_001024622) 18 NM_001024622 76302 Mm.310642 NM_001024622 ENSMUSG00000071533 Pcnp 1110018D06Rik|AI647035 PEST proteolytic signal containing nuclear protein 0.096154 0.707006 1.657541 chr7-457 chr7 65785622 65785778 + 25.4 NA intron (NM_011048, intron 1 of 21) intron (NM_011048, intron 1 of 21) 44615 NM_011048 18553 Mm.294007 XM_355911 ENSMUSG00000030513 Pcsk6 C86343|Pace4|SPC4 proprotein convertase subtilisin/kexin type 6 0.006410 0.452229 1.860328 chr2-674 chr2 20886651 20886807 + 25.4 NA 5' UTR (NR_033225, exon 1 of 2) 5' UTR (NR_033225, exon 1 of 2) 102 NR_033225 433408 Mm.386941 XM_001476432 Gm13375 OTTMUSG00000011664 predicted gene 13375 0.147436 0.783440 -2.938450 chr10-442 chr10 13048953 13049109 + 25.4 NA Intergenic Intergenic -34673 NM_001033257 215789 Mm.338311 XM_001473029 ENSMUSG00000062866 Phactr2 AV158170|BC012871 phosphatase and actin regulator 2 0.000000 0.439490 0.101921 chr6-495 chr6 47742683 47742839 + 25.4 NA intron (NM_009787, intron 1 of 9) intron (NM_009787, intron 1 of 9) 337 NM_009787 12304 Mm.2442 NM_009787 ENSMUSG00000025823 Pdia4 AI987846|Cai|ERp-72|Erp72 protein disulfide isomerase associated 4 0.083333 0.636943 -6.547921 chr1-1155 chr1 194870646 194870802 + 25.4 NA 3' UTR (NM_016851, exon 8 of 8) 3' UTR (NM_016851, exon 8 of 8) -3468 NM_001160360 319266 Mm.273695 NM_001160359 ENSMUSG00000079144 A130010J15Rik - RIKEN cDNA A130010J15 gene 0.000000 0.477707 -2.070379 chr1-1022 chr1 129032255 129032411 + 25.4 NA promoter-TSS (NM_145128) promoter-TSS (NM_145128) -198 NM_145128 107895 Mm.472488 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 0.006410 0.509554 0.497490 chr7-471 chr7 79687018 79687174 + 25.4 NA TTS (NM_008589) TTS (NM_008589) 2857 NM_008589 17293 Mm.31472 NM_008589 ENSMUSG00000030543 Mesp2 bHLHc6 mesoderm posterior 2 0.000000 0.541401 -3.278202 chr19-234 chr19 34762508 34762664 + 25.4 NA intron (NM_172838, intron 1 of 6) intron (NM_172838, intron 1 of 6) 50522 NM_172838 240638 Mm.74636 NM_172838 ENSMUSG00000009378 Slc16a12 3230401A21|AW210596 solute carrier family 16 (monocarboxylic acid transporters), member 12 0.012821 0.433121 1.538596 chr8-448 chr8 12045989 12046145 + 25.4 NA Intergenic Intergenic 205575 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.006410 0.464968 -2.048970 chr2-673 chr2 19323193 19323349 + 25.4 NA Intergenic Intergenic 33882 NM_029619 76467 Mm.27166 NM_029619 ENSMUSG00000023094 Msrb2 2310050L06Rik|Mrsb|Msrb|Pilb methionine sulfoxide reductase B2 0.012821 0.433121 1.502484 chr14-289 chr14 100409313 100409469 + 25.4 NA intron (NM_001081278, intron 1 of 17) intron (NM_001081278, intron 1 of 17) 85543 NM_001081278 210789 Mm.320639 NM_001081278 ENSMUSG00000033083 Tbc1d4 5930406J04Rik|A930035N22|AV295684|As160|KIAA0603 TBC1 domain family, member 4 0.012821 0.388535 0.255570 chr10-575 chr10 116389074 116389230 + 25.4 NA Intergenic Intergenic -1271 NM_001007583 382427 Mm.339322 NM_001007583 ENSMUSG00000020169 Best3 Vmd2l3|mBest4 bestrophin 3 0.025641 0.452229 -4.494364 chr11-756 chr11 69845452 69845608 + 25.4 NA intron (NM_007864, intron 2 of 19) intron (NM_007864, intron 2 of 19) 10731 NM_007864 13385 Mm.27256 NM_001109752 ENSMUSG00000020886 Dlg4 Dlgh4|PSD-95|PSD95|SAP90|SAP90A discs, large homolog 4 (Drosophila) 0.032051 0.598726 -1.906015 chr1-1014 chr1 122516629 122516785 + 25.4 NA Intergenic ID_B1|SINE|B4 86675 NM_010133 13798 Mm.2657 NM_010133 ENSMUSG00000058665 En1 En-1|Mo-en.1 engrailed 1 0.019231 0.528662 -1.166272 chr7-560 chr7 126590351 126590507 + 25.4 NA promoter-TSS (NM_001177307) promoter-TSS (NM_001177307) -27 NM_007438 11674 Mm.275831 NM_001177307 ENSMUSG00000030695 Aldoa Aldo-1|Aldo1|MGC107164 aldolase A, fructose-bisphosphate 0.070513 0.611465 -4.576381 chr17-484 chr17 36669631 36669787 + 25.4 NA intron (NM_019439, intron 11 of 22) intron (NM_019439, intron 11 of 22) 15691 NM_019439 54393 Mm.32191 NM_019439 ENSMUSG00000024462 Gabbr1 GABAbR1|bM573K1.1 gamma-aminobutyric acid (GABA) B receptor, 1 0.019231 0.407643 -0.471522 chr2-856 chr2 144444575 144444731 + 25.4 NA intron (NM_025314, intron 5 of 5) intron (NM_025314, intron 5 of 5) -70453 NM_025490 66328 Mm.464235 NM_025490 ENSMUSG00000027431 1700010M22Rik - RIKEN cDNA 1700010M22 gene 0.012821 0.401274 -0.882680 chr5-772 chr5 32989628 32989784 + 25.4 NA Intergenic Intergenic 101893 NM_009535 22612 Mm.4558 NM_009535 ENSMUSG00000014932 Yes1 AI323763|Yes Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 0.000000 0.363057 -5.044422 chr17-485 chr17 38033440 38033596 + 25.4 NA Intergenic Intergenic -5280 NM_001177587 100126765 Mm.471586 NM_001177587 Esp36 - exocrine gland-secreting peptide 36 0.000000 0.420382 -4.372875 chr1-905 chr1 66389208 66389364 + 25.4 NA Intergenic Intergenic -12368 NM_175510 329178 Mm.44798 XM_001471865 ENSMUSG00000055567 Unc80 C030018G13Rik|C230061B10Rik|UNC-80 unc-80 homolog (C. elegans) 0.006410 0.426752 -6.697400 chr5-1038 chr5 150533004 150533160 + 25.4 NA intron (NM_172887, intron 1 of 60) intron (NM_172887, intron 1 of 60) 4774 NM_172887 320365 Mm.454348 XM_001477828 ENSMUSG00000056602 Fry 13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|KIAA4143|cg003|mKIAA4143 furry homolog (Drosophila) 0.000000 0.426752 -2.541862 chr9-681 chr9 75029775 75029931 + 25.4 NA intron (NM_001081322, intron 2 of 40) intron (NM_001081322, intron 2 of 40) 11931 NM_001081322 208943 Mm.41339 NM_001081322 ENSMUSG00000033590 Myo5c 9130003O20Rik|BB085560|C330029I24 myosin VC 0.012821 0.560510 3.059515 chr18-316 chr18 35990590 35990746 + 25.4 NA Intergenic Intergenic 34877 NM_133687 67393 Mm.94560 NM_133687 ENSMUSG00000046668 Cxxc5 4930415K17Rik|MGC101987 CXXC finger 5 0.006410 0.382166 0.134572 chr18-334 chr18 48691173 48691329 + 25.4 NA Intergenic Intergenic 520586 NM_001025388 433182 Mm.372357 NM_001025388 ENSMUSG00000059040 Gm5506 EG433182|Eno1 predicted gene 5506 0.006410 0.439490 1.936052 chr3-615 chr3 129041095 129041251 + 25.4 NA Intergenic L1_Mur2|LINE|L1 -150766 NM_011098 18741 Mm.246804 NM_001042502 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1a|Brx1b|Munc30|Otlx2|Pitx2a|Pitx2b|Pitx2c|Pitx2cbeta|Ptx2|Rieg|solurshin paired-like homeodomain transcription factor 2 0.000000 0.445860 -2.867380 chr10-554 chr10 94305240 94305396 + 25.4 NA intron (NM_018797, intron 5 of 30) intron (NM_018797, intron 5 of 30) 68948 NM_018797 54712 Mm.256712 NM_018797 ENSMUSG00000074785 Plxnc1 2510048K12Rik|AW742158|CD232|Vespr plexin C1 0.000000 0.343949 -1.723629 chr2-937 chr2 181793848 181794004 + 25.4 NA exon (NM_025901, exon 1 of 3) exon (NM_025901, exon 1 of 3) 161 NM_025901 67005 Mm.306482 NM_025901 ENSMUSG00000038628 Polr3k 12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11 polymerase (RNA) III (DNA directed) polypeptide K 0.057692 0.579618 -4.663098 chr12-648 chr12 82667984 82668140 + 25.4 NA intron (NM_177395, intron 2 of 7) intron (NM_177395, intron 2 of 7) 31956 NM_177395 338372 Mm.35284 NM_001174107 ENSMUSG00000042724 Map3k9 E130314H24Rik|Mlk1|Prke1 mitogen-activated protein kinase kinase kinase 9 0.000000 0.579618 -5.469805 chr7-493 chr7 97582415 97582571 + 25.4 NA intron (NM_023671, intron 2 of 6) intron (NM_023671, intron 2 of 6) 10611 NM_023671 12729 Mm.21482 NM_023671 ENSMUSG00000025439 Clns1a 2610036D06Rik|2610100O04Rik|Clci|Clcni|ICLN chloride channel, nucleotide-sensitive, 1A 0.019231 0.515924 -1.824499 chr9-555 chr9 19372467 19372623 + 25.4 NA promoter-TSS (NM_172918) promoter-TSS (NM_172918) 53 NM_172918 244713 Mm.67366 NM_172918 ENSMUSG00000057551 Zfp317 4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40 zinc finger protein 317 0.070513 0.535032 -1.278501 chr2-813 chr2 104817717 104817873 + 25.4 NA promoter-TSS (NM_145380) promoter-TSS (NM_145380) 71 NM_145380 98221 Mm.379278 NM_145380 ENSMUSG00000027170 Eif3m Ga17|MGC118449|Pcid1 eukaryotic translation initiation factor 3, subunit M 0.108974 0.675159 -1.805763 chr6-440 chr6 5619887 5620043 + 25.4 NA Intergenic Lx6|LINE|L1 -55673 NM_001191023 13426 Mm.20893 NM_001191023 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 0.006410 0.382166 -4.748863 chr9-694 chr9 83589745 83589901 + 25.4 NA intron (NM_001145974, intron 1 of 5) intron (NM_001145974, intron 1 of 5) 13137 NM_001145974 83603 Mm.83949 NM_001145974 ENSMUSG00000032262 Elovl4 - elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 0.012821 0.464968 -2.152221 chr11-701 chr11 46120427 46120583 + 25.4 NA intron (NM_133769, intron 7 of 30) intron (NM_133769, intron 7 of 30) 35268 NM_133769 76884 Mm.154358 NM_133769 ENSMUSG00000020340 Cyfip2 1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168 cytoplasmic FMR1 interacting protein 2 0.006410 0.573248 1.668272 chr13-382 chr13 34053945 34054101 + 25.4 NA intron (NM_026512, intron 2 of 6) intron (NM_026512, intron 2 of 6) 8918 NM_026512 68021 Mm.140243 NM_026512 ENSMUSG00000038286 Bphl 2010012D11Rik|5730533B08Rik|AI115341 biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) 0.025641 0.509554 -3.839954 chr19-188 chr19 4125788 4125944 + 25.4 NA promoter-TSS (NM_016666) promoter-TSS (NM_016666) -39 NM_016666 11632 Mm.10433 NM_016666 ENSMUSG00000024847 Aip AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2 aryl-hydrocarbon receptor-interacting protein 0.096154 0.694268 -2.501627 chr19-251 chr19 47369604 47369760 + 25.4 NA intron (NM_001164717, intron 7 of 13) intron (NM_001164717, intron 7 of 13) 87529 NM_001163480 18011 Mm.313651 NM_001163480 ENSMUSG00000006435 Neurl1a 2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Nlz|Rnf67 neuralized homolog 1A (Drosophila) 0.019231 0.617834 -7.765234 chr1-812 chr1 11492800 11492956 + 25.4 NA intron (NM_001160371, intron 1 of 7) intron (NM_001160371, intron 1 of 7) 93553 NM_001160371 320492 Mm.52021 NM_001160369 ENSMUSG00000057715 A830018L16Rik VEST1 RIKEN cDNA A830018L16 gene 0.000000 0.471338 -5.108041 chr9-664 chr9 66907367 66907523 + 25.4 NA Intergenic Intergenic -59088 NM_001164251 22003 Mm.121878 NM_001164248 ENSMUSG00000032366 Tpm1 AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM tropomyosin 1, alpha 0.012821 0.458599 -1.272303 chr2-743 chr2 59002890 59003046 + 25.4 NA intron (NM_175464, intron 1 of 20) intron (NM_175464, intron 1 of 20) 41280 NM_175464 227937 Mm.260938 NM_026361 ENSMUSG00000026991 Pkp4 5031422I09Rik|9430019K17Rik|Armrp|MGC100358|MGC105166|p0071 plakophilin 4 0.019231 0.401274 -4.981368 chr1-983 chr1 92798107 92798263 + 25.4 NA promoter-TSS (NM_001159725) promoter-TSS (NM_001159725) -112 NM_001159725 19329 Mm.279780 NM_001159725 ENSMUSG00000026304 Rab17 AW413472 RAB17, member RAS oncogene family 0.019231 0.585987 -4.079410 chr16-306 chr16 13796919 13797075 + 25.4 NA intron (NM_001039533, intron 3 of 22) intron (NM_001039533, intron 3 of 22) 19716 NM_001039533 94184 Mm.171484 NM_001039533 ENSMUSG00000022680 Pdxdc1 2210010A19Rik|AA415817|Kiaa0251-hp|MGC8182 pyridoxal-dependent decarboxylase domain containing 1 0.012821 0.401274 1.306082 chr7-547 chr7 120633778 120633934 + 25.4 NA promoter-TSS (NM_007908) promoter-TSS (NM_007908) -175 NM_007908 13631 Mm.361795 NM_007908 ENSMUSG00000035064 Eef2k C86191|eEF-2K eukaryotic elongation factor-2 kinase 0.051282 0.566879 -6.050772 chrX-117 chrX 136011974 136012130 + 25.4 NA Intergenic CpG -12339 NM_011845 23947 Mm.131097 NM_011845 ENSMUSG00000000266 Mid2 FXY2|Trim1 midline 2 0.115385 0.707006 -0.987437 chr18-275 chr18 4845320 4845476 + 25.4 NA Intergenic Intergenic -201188 NM_153153 225115 Mm.136791 NM_153153 ENSMUSG00000024236 Svil AU024053|B430302E16Rik supervillin 0.006410 0.496815 -2.973819 chr10-505 chr10 76843619 76843775 + 25.4 NA intron (NM_001024837, intron 1 of 10) intron (NM_001024837, intron 1 of 10) 18292 NM_130895 110532 Mm.276815 NM_001024837 ENSMUSG00000020262 Adarb1 1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1 adenosine deaminase, RNA-specific, B1 0.000000 0.299363 -5.396344 chr1-964 chr1 82047536 82047692 + 25.4 NA Intergenic Intergenic 122849 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.012821 0.452229 -5.401930 chr11-725 chr11 57782861 57783017 + 25.4 NA Intergenic Intergenic -42319 NM_028451 73158 Mm.248843 XM_126172 ENSMUSG00000037331 Larp1 1810024J12Rik|3110040D16Rik|Larp|mKIAA0731 La ribonucleoprotein domain family, member 1 0.025641 0.528662 -3.114431 chr17-420 chr17 23276351 23276507 + 25.4 NA Intergenic tRNA-Arg-AGG|tRNA|tRNA 15419 NM_001033496 449521 Mm.268582 NM_001033496 ENSMUSG00000071256 Zfp213 BC038178|D17Ertd197e zinc finger protein 213 0.032051 0.515924 -5.023809 chr12-623 chr12 76588207 76588363 + 25.4 NA promoter-TSS (NM_028203) promoter-TSS (NM_028203) 92 NM_028203 72338 Mm.341719 XM_001001795 ENSMUSG00000045690 Wdr89 2600001A11Rik|MGC67964 WD repeat domain 89 0.089744 0.700637 -4.296587 chr1-969 chr1 84266607 84266763 + 25.4 NA intron (NM_152915, intron 11 of 12) intron (NM_152915, intron 11 of 12) -103015 NM_001003948 98496 Mm.187470 NM_001003948 ENSMUSG00000045658 Pid1 5033414K04Rik|MGC90850 phosphotyrosine interaction domain containing 1 0.000000 0.458599 1.669616 chr19-201 chr19 7464332 7464488 + 25.4 NA Intergenic L1MB7|LINE|L1 -14340 NM_001167831 68229 Mm.34766 NM_001033139 ENSMUSG00000024970 AI846148 1700105P06Rik expressed sequence AI846148 0.006410 0.560510 -4.423164 chr9-733 chr9 110321670 110321826 + 25.4 NA promoter-TSS (NM_177771) promoter-TSS (NM_177771) -25 NM_010628 16578 Mm.42170 NM_001163569 ENSMUSG00000032489 Kif9 MGC141389 kinesin family member 9 0.032051 0.509554 -4.391653 chr1-942 chr1 75633157 75633313 + 25.4 NA Intergenic Intergenic 203822 NM_009208 20536 Mm.5053 NM_009208 ENSMUSG00000006576 Slc4a3 A930038D23Rik|Ae3 solute carrier family 4 (anion exchanger), member 3 0.019231 0.490446 -3.218990 chr5-940 chr5 120734903 120735059 + 25.4 NA Intergenic Intergenic -1601 NM_133902 257635 Mm.5162 NM_133902 ENSMUSG00000029596 Sdsl 4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH serine dehydratase-like 0.032051 0.547771 -0.398508 chr3-499 chr3 43295689 43295845 + 25.4 NA Intergenic Intergenic 1456601 NM_027271 73852 Mm.29006 NM_001099785 ENSMUSG00000025766 D3Ertd751e 2810009O15Rik|4930415G15Rik DNA segment, Chr 3, ERATO Doi 751, expressed 0.006410 0.356688 -2.655687 chr7-419 chr7 30082062 30082218 + 25.4 NA Intergenic MIR|SINE|MIR -10608 NM_175478 233067 Mm.23157 NM_175478 ENSMUSG00000036957 Lrfn3 A530045B06Rik|SALM4 leucine rich repeat and fibronectin type III domain containing 3 0.019231 0.394904 -0.981627 chr12-607 chr12 72492226 72492382 + 25.4 NA Intergenic Intergenic -257350 NM_026102 208846 Mm.474935 NM_026102 ENSMUSG00000034574 Daam1 1700066F09Rik|2310028E21Rik|AI503486|E130308H01|mKIAA0666 dishevelled associated activator of morphogenesis 1 0.032051 0.356688 -3.690399 chr5-916 chr5 114668357 114668513 + 25.4 NA intron (NM_054093, intron 17 of 27) intron (NM_054093, intron 17 of 27) 26830 NM_054093 117146 Mm.28792 NM_054093 ENSMUSG00000029577 Ube3b AI449831|AU020130 ubiquitin protein ligase E3B 0.019231 0.579618 -3.318273 chr7-468 chr7 78777218 78777374 + 25.4 NA intron (NM_001162939, intron 2 of 3) intron (NM_001162939, intron 2 of 3) 7857 NM_001162939 68048 Mm.34109 NM_001162939 ENSMUSG00000030609 Aen 2700083B06Rik|Isg20l1 apoptosis enhancing nuclease 0.006410 0.509554 -4.602140 chr11-832 chr11 95126262 95126418 + 25.4 NA promoter-TSS (NM_177619) promoter-TSS (NM_177619) -49 NM_177619 217127 Mm.205400 NM_001195003 ENSMUSG00000038909 Myst2 Hbo1|Hboa|KAT7|MGC56758 MYST histone acetyltransferase 2 0.064103 0.585987 -4.313395 chr4-615 chr4 9543122 9543278 + 25.4 NA intron (NM_001177851, intron 3 of 12) intron (NM_001177851, intron 3 of 12) 27664 NM_001177853 65973 Mm.412008 NM_001177849 ENSMUSG00000028207 Asph 2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37 aspartate-beta-hydroxylase 0.012821 0.560510 -5.574520 chr7-534 chr7 113611410 113611566 + 25.4 NA intron (NM_145584, intron 2 of 15) intron (NM_145584, intron 2 of 15) 54310 NM_145584 233744 Mm.334160 NM_145584 ENSMUSG00000038156 Spon1 AI666765|AW455831|BC020531|D330035F22Rik|FSP spondin 1, (f-spondin) extracellular matrix protein 0.000000 0.573248 -4.740856 chr16-313 chr16 23842971 23843127 + 25.4 NA exon (NM_001008230, exon 2 of 2) exon (NM_001008230, exon 2 of 2) 3094 NM_001008230 224055 Mm.39248 NM_001008230 ENSMUSG00000047531 Rtp2 Gm605|MGC56957 receptor transporter protein 2 0.032051 0.573248 -1.834345 chr8-595 chr8 125988488 125988644 + 25.4 NA promoter-TSS (NR_028128) promoter-TSS (NR_028128) 127 NM_016738 270106 Mm.391834 NM_016738 ENSMUSG00000000740 Rpl13 L13 ribosomal protein L13 0.108974 0.675159 -6.882716 chr11-900 chr11 113884714 113884870 + 25.4 NA Intergenic Intergenic -2751 NM_172800 237979 Mm.401394 NM_172800 ENSMUSG00000041592 Sdk2 4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514 sidekick homolog 2 (chicken) 0.019231 0.528662 5.365967 chr4-602 chr4 3016859 3017015 + 25.4 NA Intergenic GSAT_MM|Satellite|Satellite -82292 NM_001167534 100312470 Mm.480297 NM_001167534 Vmn1r2 Gm11776|OTTMUSG00000004179 vomeronasal 1 receptor 2 0.012821 0.375796 -5.313627 chr3-659 chr3 157078810 157078966 + 25.4 NA intron (NM_001039094, intron 4 of 6) intron (NM_001039094, intron 4 of 6) -390801 NM_017381 53861 Mm.259036 NM_017381 ENSMUSG00000028180 Zranb2 AI227013|Zfp265|Zis|Znf265 zinc finger, RAN-binding domain containing 2 0.000000 0.414013 -0.727115 chr17-525 chr17 56696410 56696566 + 25.4 NA promoter-TSS (NM_133801) promoter-TSS (NM_133801) -71 NM_133801 98053 Mm.24632 NM_133801 ENSMUSG00000002658 Gtf2f1 2810405L04Rik|C76800|RAP74 general transcription factor IIF, polypeptide 1 0.064103 0.515924 -8.527362 chr9-624 chr9 55130673 55130829 + 25.4 NA intron (NM_172923, intron 1 of 10) intron (NM_172923, intron 1 of 10) 5666 NM_172923 244886 Mm.24361 NM_172923 ENSMUSG00000032313 AI118078 9630029F15 expressed sequence AI118078 0.019231 0.547771 -3.507286 chr13-451 chr13 81524704 81524860 + 25.4 NA intron (NR_015587, intron 1 of 1) intron (NR_015587, intron 1 of 1) 97011 NR_015587 319983 Mm.343027 NR_015587 9330111N05Rik - RIKEN cDNA 9330111N05 gene 0.019231 0.477707 1.933522 chr5-779 chr5 35336434 35336590 + 25.4 NA intron (NM_001163512, intron 2 of 13) intron (NM_001163512, intron 2 of 13) 20574 NM_001163512 71729 Mm.196208 NM_001163512 ENSMUSG00000029101 Rgs12 1200016K18Rik|4632412M04Rik|AI481290|E130309H11 regulator of G-protein signaling 12 0.012821 0.592357 0.830609 chr10-541 chr10 90475908 90476064 + 25.4 NA intron (NM_009684, intron 14 of 26) intron (NM_009684, intron 14 of 26) 36556 NM_001042558 11783 Mm.220289 NM_001042558 ENSMUSG00000019979 Apaf1 6230400I06Rik|Apaf-1|Apaf1l|KIAA0413|fog|mKIAA0413 apoptotic peptidase activating factor 1 0.000000 0.363057 -2.037036 chr4-768 chr4 117738338 117738494 + 25.4 NA intron (NM_011213, intron 7 of 32) intron (NM_011213, intron 7 of 32) 50913 NM_011213 19268 Mm.29855 NM_011213 ENSMUSG00000033295 Ptprf AA591035|LAR|LARS|RPTP-LAR protein tyrosine phosphatase, receptor type, F 0.019231 0.509554 -2.072309 chr1-1008 chr1 120853827 120853983 + 25.4 NA intron (NM_001081125, intron 1 of 13) intron (NM_001081125, intron 1 of 13) 27260 NM_001081125 14633 Mm.273292 NM_001081125 ENSMUSG00000048402 Gli2 AW546128 GLI-Kruppel family member GLI2 0.012821 0.490446 0.776825 chr12-525 chr12 13694003 13694159 + 25.4 NA Intergenic Intergenic 398967 NM_027706 71169 Mm.177520 XM_484120 Nbas 4933425L03Rik|Nag neuroblastoma amplified sequence 0.000000 0.477707 -4.211963 chr18-328 chr18 42957893 42958049 + 25.4 NA intron (NM_028392, intron 1 of 8) intron (NM_028392, intron 1 of 8) 66991 NM_027531 72930 Mm.26134 NM_027531 ENSMUSG00000024500 Ppp2r2b 2900026H06Rik|6330404L05Rik|E130009M08Rik|MGC113781|PP2A-PR55B|PR55-BETA|SCA12 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform 0.025641 0.484076 -0.618703 chr7-446 chr7 58205973 58206129 + 25.4 NA Intergenic Intergenic -320019 NM_009728 11982 Mm.135129 NM_009728 ENSMUSG00000025324 Atp10a Atp10c|pfatp ATPase, class V, type 10A 0.006410 0.363057 -3.122461 chr2-739 chr2 58559012 58559168 + 25.4 NA Intergenic Intergenic -11480 NM_029692 76654 Mm.437094 NM_029692 ENSMUSG00000026839 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 0.000000 0.439490 -2.144113 chr1-821 chr1 16468248 16468404 + 25.4 NA intron (NM_001111272, intron 2 of 12) intron (NM_001111272, intron 2 of 12) 36190 NM_025303 29819 Mm.216257 NM_001111272 ENSMUSG00000025920 Stau2 - staufen (RNA binding protein) homolog 2 (Drosophila) 0.000000 0.414013 -9.668077 chr11-645 chr11 3534248 3534404 + 25.4 NA Intergenic Intergenic 13210 NR_002322 544752 Mm.471608 NR_002321 Tug1 AI316828 taurine upregulated gene 1 0.000000 0.414013 -1.349534 chr7-489 chr7 96321126 96321282 + 25.4 NA intron (NM_011858, intron 3 of 32) intron (NM_011858, intron 3 of 32) 196589 NR_030489 735284 NR_030489 Mir708 Mirn708|mmu-mir-708 microRNA 708 0.019231 0.471338 -6.142828 chr6-637 chr6 115958624 115958780 + 25.4 NA intron (NM_026376, intron 1 of 35) intron (NM_026376, intron 1 of 35) 1922 NM_026376 67784 Mm.3085 NM_026376 ENSMUSG00000030123 Plxnd1 6230425C21Rik plexin D1 0.019231 0.547771 -5.046969 chr3-642 chr3 144391101 144391257 + 25.4 NA intron (NM_011828, intron 3 of 6) intron (NM_011828, intron 3 of 6) 116423 NM_011828 23908 Mm.465667 NM_011828 ENSMUSG00000040151 Hs2st1 AW214369|Hs2st|mKIAA0448 heparan sulfate 2-O-sulfotransferase 1 0.019231 0.439490 -2.845438 chr15-333 chr15 32089279 32089435 + 25.4 NA Intergenic Intergenic -32520 NM_020503 57254 Mm.377133 NM_020503 ENSMUSG00000045267 Tas2r119 T2r19|Tas2r19|mGR19|mt2r19 taste receptor, type 2, member 119 0.006410 0.382166 -3.485933 chr15-343 chr15 36367605 36367761 + 25.4 NA Intergenic Intergenic 73697 NM_175134 68839 Mm.396537 NM_175134 ENSMUSG00000048307 Ankrd46 1110054N06Rik|AI314978|AI987733 ankyrin repeat domain 46 0.006410 0.420382 3.480631 chr1-917 chr1 72788200 72788356 + 25.4 NA Intergenic Intergenic 19794 NM_010518 16011 Mm.466164 NM_010518 ENSMUSG00000026185 Igfbp5 AI256729|AW208790|IGFBP-5|IGFBP-5P insulin-like growth factor binding protein 5 0.006410 0.503185 -1.728499 chr11-840 chr11 97782977 97783133 + 25.4 NA intron (NM_001163608, intron 2 of 13) intron (NM_001163608, intron 2 of 13) 19481 NM_028199 72324 Mm.39617 NM_001163608 ENSMUSG00000017417 Plxdc1 2410003I07Rik|AI848450|MGC130377|Tem7 plexin domain containing 1 0.051282 0.528662 -10.521304 chr11-885 chr11 108911879 108912035 + 25.4 NA Intergenic B4A|SINE|B4 48502 NM_001085512 268498 Mm.227970 XM_196056 ENSMUSG00000078605 E030025P04Rik Gm664 RIKEN cDNA E030025P04 gene 0.025641 0.547771 -6.003695 chr2-709 chr2 32447650 32447806 + 25.4 NA Intergenic Intergenic -3784 NM_021515 11636 Mm.480325 NM_021515 ENSMUSG00000026817 Ak1 Ak-1|B430205N08Rik adenylate kinase 1 0.000000 0.471338 0.945118 chr7-405 chr7 18242912 18243068 + 25.4 NA intron (NM_032418, intron 1 of 14) intron (NM_032418, intron 1 of 14) 620 NM_001190491 13400 Mm.6529 NM_001190490 ENSMUSG00000030409 Dmpk DM|DMK|Dm15|MDPK|MT-PK dystrophia myotonica-protein kinase 0.012821 0.617834 -2.176225 chr18-373 chr18 80243176 80243332 + 25.4 NA intron (NM_053117, intron 2 of 2) intron (NM_053117, intron 2 of 2) 34301 NM_053117 93737 Mm.24678 NM_053117 ENSMUSG00000056214 Pard6g 2410049N21Rik|Par6a par-6 partitioning defective 6 homolog gamma (C. elegans) 0.019231 0.554140 -4.313395 chr4-730 chr4 99605698 99605854 + 25.4 NA intron (NM_013845, intron 1 of 8) intron (NM_013845, intron 1 of 8) 12054 NM_013845 26563 Mm.480366 NM_013845 ENSMUSG00000035305 Ror1 2810404D04Rik|Ntrkr1|mRor1 receptor tyrosine kinase-like orphan receptor 1 0.032051 0.535032 -0.542942 chr5-820 chr5 65299124 65299280 + 25.4 NA intron (NM_026667, intron 7 of 13) intron (NM_026667, intron 7 of 13) 49750 NR_030577 100124451 NR_030577 Mir574 Mirn574|mmu-mir-574 microRNA 574 0.019231 0.522293 1.881494 chr7-410 chr7 24914944 24915100 + 25.4 NA intron (NM_207677, intron 4 of 4) intron (NM_207677, intron 4 of 4) 13597 NM_207677 67379 Mm.280594 NM_207677 ENSMUSG00000054499 Dedd2 2410050E11Rik|FLAME-3 death effector domain-containing DNA binding protein 2 0.032051 0.579618 -4.261071 chr12-593 chr12 64747957 64748113 + 25.4 NA Intergenic Intergenic 645468 NM_001163271 623046 Mm.189552 XM_887483 ENSMUSG00000043060 Fscb EG623046 fibrous sheath CABYR binding protein 0.006410 0.388535 7.094373 chr8-506 chr8 48042252 48042408 + 25.4 NA Intergenic Intergenic -8555 NM_027973 71876 Mm.217385 NM_027973 ENSMUSG00000031629 Mlf1ip 1700029A22Rik|MGC143675|MGC143676 myeloid leukemia factor 1 interacting protein 0.006410 0.407643 -1.150701 chr12-704 chr12 106596679 106596835 + 25.4 NA Intergenic Intergenic 185445 NM_001029843 22367 Mm.2981 NM_001029843 ENSMUSG00000021115 Vrk1 51PK vaccinia related kinase 1 0.012821 0.420382 -0.855113 chr13-429 chr13 57920906 57921062 + 25.4 NA Intergenic Intergenic -3029 NM_001166465 20745 Mm.379020 NM_001166463 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 0.012821 0.573248 -4.135635 chr1-978 chr1 91139052 91139208 + 25.4 NA Intergenic RSINE1|SINE|B4 -146851 NM_178119 347722 Mm.291135 NM_001037136 ENSMUSG00000055013 Agap1 Centg2|Ggap1|R75364|mKIAA1099 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 0.000000 0.439490 -5.496303 chr8-581 chr8 123380854 123381010 + 25.4 NA intron (NM_198671, intron 1 of 15) intron (NM_198671, intron 1 of 15) 6090 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.044872 0.687898 -4.402392 chr16-296 chr16 8732678 8732834 + 25.4 NA Intergenic B3|SINE|B2 -13213 NM_001081400 69053 Mm.479940 XM_001480138 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|R74903 RIKEN cDNA 1810013L24 gene 0.000000 0.484076 -2.167974 chr14-298 chr14 119173460 119173616 + 25.4 NA intron (NM_001001490, intron 1 of 3) intron (NM_001001490, intron 1 of 3) 4079 NM_001001490 239283 Mm.138520 NM_001001490 ENSMUSG00000044819 Oxgr1 Gm299|Gpr80|Gpr99|P2Y15 oxoglutarate (alpha-ketoglutarate) receptor 1 0.006410 0.394904 3.179486 chr11-747 chr11 65955563 65955719 + 25.4 NA intron (NM_001099633, intron 6 of 68) intron (NM_001099633, intron 6 of 68) 29105 NM_001099633 237806 Mm.459279 XM_110968 ENSMUSG00000056752 Dnahc9 9030022M04|A230091C01|C230051G16|D11Ertd686e|DNAH9|KIAA0357|mKIAA0357 dynein, axonemal, heavy chain 9 0.012821 0.464968 -3.278025 chr8-574 chr8 122491066 122491222 + 25.4 NA promoter-TSS (NM_021441) promoter-TSS (NM_021441) 73 NM_021441 21341 Mm.475128 NM_021441 ENSMUSG00000031832 Taf1c Tafi95|mTAFI95 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C 0.076923 0.617834 -4.079410 chr5-831 chr5 68076406 68076562 + 25.4 NA intron (NM_001038999, intron 5 of 36) intron (NM_001038999, intron 5 of 36) 50082 NM_001038999 11980 Mm.153230 NM_001038999 ENSMUSG00000037685 Atp8a1 AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI|KIAA4233|mKIAA4233 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 0.006410 0.439490 -4.813133 chr4-747 chr4 106148981 106149137 + 25.4 NA promoter-TSS (NM_001083887) promoter-TSS (NM_001083887) 59 NM_001083887 230577 Mm.134029 NM_001083887 ENSMUSG00000043572 Pars2 BC027073|MGC47008 prolyl-tRNA synthetase (mitochondrial)(putative) 0.070513 0.630573 -9.241129 chr2-881 chr2 163232085 163232241 + 25.4 NA intron (NR_027970, intron 1 of 3) intron (NR_027970, intron 1 of 3) 999 NR_027970 68314 Mm.46190 NM_197983 0610008F07Rik - RIKEN cDNA 0610008F07 gene 0.012821 0.554140 -2.681478 chr4-666 chr4 59129197 59129353 + 25.4 NA promoter-TSS (NM_025277) promoter-TSS (NM_025277) 66 NM_025277 14700 Mm.41780 NM_025277 ENSMUSG00000038607 Gng10 AV006524 guanine nucleotide binding protein (G protein), gamma 10 0.128205 0.770701 -5.021317 chr2-710 chr2 32502133 32502289 + 25.4 NA intron (NM_007932, intron 12 of 14) intron (NM_007932, intron 12 of 14) 13973 NM_010236 14287 Mm.3830 NM_010236 ENSMUSG00000009566 Fpgs AA408187 folylpolyglutamyl synthetase 0.012821 0.592357 -6.627507 chr1-876 chr1 52575446 52575602 + 25.4 NA intron (NR_024590, intron 1 of 8) intron (NR_024590, intron 1 of 8) 275 NM_001142647 227094 Mm.83541 NM_001142647 ENSMUSG00000043015 Tmem194b 5330401P04Rik|9830163O08 transmembrane protein 194B 0.064103 0.554140 -5.959633 chr8-537 chr8 74612221 74612377 + 25.4 NA intron (NM_010589, intron 13 of 24) intron (NM_010589, intron 13 of 24) -5941 NM_013564 16336 Mm.476857 NM_013564 ENSMUSG00000079019 Insl3 Rlf|Rlnl insulin-like 3 0.006410 0.566879 2.767828 chrX-85 chrX 19582162 19582318 + 25.4 NA Intergenic CpG -35245 NM_199317 382207 Mm.281517 NM_199317 ENSMUSG00000037315 Phf16 5730598B06|AI851988|AW544806|Jade3|mKIAA0215 PHD finger protein 16 0.115385 0.732484 -10.710634 chr3-646 chr3 146437005 146437161 + 25.4 NA promoter-TSS (NM_010318) promoter-TSS (NM_010318) 56 NM_027617 70951 Mm.383235 NM_027617 ENSMUSG00000028188 Spata1 4921536I21Rik|AV266943|SP-2 spermatogenesis associated 1 0.173077 0.808917 -5.508620 chr19-247 chr19 46228443 46228599 + 25.4 NA intron (NM_178930, intron 3 of 39) intron (NM_178930, intron 3 of 39) 22653 NM_178930 107338 Mm.271620 NM_178930 ENSMUSG00000025224 Gbf1 1700083E03Rik|AI035702|AW049900|MGC100238|MGC90745|mKIAA0248 golgi-specific brefeldin A-resistance factor 1 0.000000 0.388535 -3.134725 chr8-457 chr8 14763374 14763530 + 25.4 NA intron (NM_001145965, intron 6 of 14) intron (NM_001145965, intron 6 of 14) -125060 NM_012000 26889 Mm.467756 NM_012000 ENSMUSG00000026317 Cln8 mnd ceroid-lipofuscinosis, neuronal 8 0.012821 0.503185 -5.725259 chr2-724 chr2 46125865 46126021 + 25.4 NA Intergenic Intergenic -1190655 NM_015753 24136 Mm.440702 NM_015753 ENSMUSG00000026872 Zeb2 9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b|mKIAA0569 zinc finger E-box binding homeobox 2 0.006410 0.407643 -4.500543 chr10-451 chr10 18459496 18459652 + 25.4 NA Intergenic MER77|LTR|ERVL 16635 NM_177706 237300 Mm.444821 NM_177706 ENSMUSG00000044624 Gm4922 4933423E17|EG237300 predicted gene 4922 0.019231 0.477707 -5.096735 chr9-699 chr9 85967562 85967718 + 25.4 NA Intergenic Intergenic 293994 NM_027394 70348 Mm.53469 NM_027394 ENSMUSG00000032415 Ube2cbp 2610018I03Rik|MGC144619 ubiquitin-conjugating enzyme E2C binding protein 0.006410 0.458599 1.458957 chr7-605 chr7 142929348 142929504 + 25.4 NA intron (NM_008434, intron 1 of 15) intron (NM_008434, intron 1 of 15) 12783 NM_008434 16535 Mm.453037 NM_008434 ENSMUSG00000009545 Kcnq1 AW559127|KVLQT1|Kcna9 potassium voltage-gated channel, subfamily Q, member 1 0.012821 0.509554 -4.701769 chr11-872 chr11 106032877 106033033 + 25.4 NA promoter-TSS (NM_026009) promoter-TSS (NM_026009) -60 NM_028074 72047 Mm.41367 NM_028074 ENSMUSG00000020705 Ddx42 1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 0.102564 0.611465 -4.740856 chr9-655 chr9 64629354 64629510 + 25.4 NA intron (NM_001162917, intron 2 of 34) intron (NM_001162917, intron 2 of 34) 20416 NM_001162917 102442 Mm.222473 XM_001476259 Dennd4a AI115600|AI851943|F730015K02Rik|MGC198792 DENN/MADD domain containing 4A 0.019231 0.414013 -1.160809 chr4-861 chr4 150585525 150585681 + 25.4 NA intron (NM_001166021, intron 2 of 22) intron (NM_001166021, intron 2 of 22) 119954 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.032051 0.452229 -6.358335 chr1-1111 chr1 172391851 172392007 + 25.4 NA intron (NM_001109985, intron 1 of 9) intron (NM_001109985, intron 1 of 9) 1856 NM_027528 70729 Mm.65316 NM_001109985 ENSMUSG00000038473 Nos1ap 6330408P19Rik|Capon nitric oxide synthase 1 (neuronal) adaptor protein 0.012821 0.522293 -4.845786 chr19-192 chr19 4605255 4605411 + 25.4 NA intron (NM_001162946, intron 9 of 20) intron (NM_001162946, intron 9 of 20) 10334 NM_153388 225875 Mm.329675 NM_153388 ENSMUSG00000045045 Lrfn4 BC023156|MGC36464|MGC36545|Salm3 leucine rich repeat and fibronectin type III domain containing 4 0.006410 0.496815 -5.359475 chr1-856 chr1 39312382 39312538 + 25.4 NA promoter-TSS (NM_053257) promoter-TSS (NM_053257) 64 NM_053257 114641 Mm.443000 NM_053257 ENSMUSG00000073702 Rpl31 MGC106651|MGC107628 ribosomal protein L31 0.121795 0.675159 -5.745105 chr13-415 chr13 52505206 52505362 + 25.4 NA Intergenic Intergenic 37984 NM_001024474 68203 Mm.29362 NM_001024474 ENSMUSG00000047842 Diras2 2900052J15Rik|AI414999 DIRAS family, GTP-binding RAS-like 2 0.025641 0.490446 -1.679075 chr19-214 chr19 17460951 17461107 + 25.4 NA promoter-TSS (NM_019437) promoter-TSS (NM_019437) -32 NM_019437 54391 Mm.7013 NM_019437 ENSMUSG00000024712 Rfk 0610038L10Rik|AF031381|KOI-4 riboflavin kinase 0.147436 0.764331 0.739790 chr10-453 chr10 19539069 19539225 + 25.4 NA intron (NM_029529, intron 1 of 1) intron (NM_029529, intron 1 of 1) 1728 NM_029529 76157 Mm.477281 NM_029529 ENSMUSG00000050473 Slc35d3 6230421J19Rik|Frcl1 solute carrier family 35, member D3 0.057692 0.579618 -7.720082 chr12-612 chr12 72917412 72917568 + 25.4 NA Intergenic Intergenic 72085 NM_181752 238252 Mm.390508 NM_181752 ENSMUSG00000043398 Gpr135 PAFR G protein-coupled receptor 135 0.012821 0.509554 -4.293979 chr5-765 chr5 28852012 28852168 + 25.4 NA intron (NR_015562, intron 1 of 6) intron (NR_015562, intron 1 of 6) -54202 NM_009170 20423 Mm.57202 NM_009170 ENSMUSG00000002633 Shh 9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081 sonic hedgehog 0.019231 0.515924 3.225810 chr17-432 chr17 25589028 25589184 + 25.4 NA promoter-TSS (NM_001163766) promoter-TSS (NM_001163766) 9 NM_001163766 106618 Mm.35470 XM_001478000 ENSMUSG00000073434 Wdr90 3230401M21Rik|AI551153|mKIAA1924 WD repeat domain 90 0.147436 0.662420 -4.639258 chr12-543 chr12 29371390 29371546 + 25.4 NA intron (NM_201357, intron 3 of 8) intron (NM_201357, intron 3 of 8) 33373 NM_201357 380752 Mm.273724 NM_201357 ENSMUSG00000036613 Tssc1 D12Ertd604e tumor suppressing subtransferable candidate 1 0.012821 0.490446 -2.447494 chr9-563 chr9 21677679 21677835 + 25.4 NA promoter-TSS (NM_025977) promoter-TSS (NM_025977) 107 NM_178577 235043 Mm.253329 NM_178577 ENSMUSG00000040883 Tmem205 MGC18837 transmembrane protein 205 0.051282 0.636943 -5.758299 chr9-702 chr9 88057451 88057607 + 25.4 NA Intergenic L1VL2|LINE|L1 -67972 NM_011851 23959 Mm.244235 NM_011851 ENSMUSG00000032420 Nt5e 2210401F01Rik|AI447961|CD73|NT|Nt5|eNT 5' nucleotidase, ecto 0.006410 0.566879 -3.595239 chr7-554 chr7 122365814 122365970 + 25.4 NA intron (NM_008855, intron 10 of 16) intron (NM_008855, intron 10 of 16) -96999 NM_019430 54376 Mm.444212 NM_019430 ENSMUSG00000066189 Cacng3 - calcium channel, voltage-dependent, gamma subunit 3 0.012821 0.414013 -1.971551 chr4-634 chr4 43066135 43066291 + 25.4 NA intron (NM_172691, intron 1 of 8) intron (NM_172691, intron 1 of 8) 1090 NM_172691 230088 Mm.260162 NM_172691 ENSMUSG00000036002 B230312A22Rik KIAA1539|mKIAA1539 RIKEN cDNA B230312A22 gene 0.006410 0.503185 0.467971 chr17-557 chr17 84933808 84933964 + 25.4 NA Intergenic Intergenic -2786 NM_009205 20532 Mm.227176 NM_009205 ENSMUSG00000024131 Slc3a1 D2H|NBAT|NTAA|RBAT solute carrier family 3, member 1 0.000000 0.369427 -5.746418 chr12-653 chr12 85064701 85064857 + 25.4 NA intron (NM_001163501, intron 1 of 12) intron (NM_001163501, intron 1 of 12) 18984 NM_001163502 238317 Mm.31256 XM_001473233 ENSMUSG00000042507 C130039O16Rik 9430029N19Rik|Gm260 RIKEN cDNA C130039O16 gene 0.012821 0.541401 -2.948137 chr4-878 chr4 154065785 154065941 + 25.4 NA exon (NM_011385, exon 1 of 7) exon (NM_011385, exon 1 of 7) 472 NM_011385 20481 Mm.480566 NM_011385 ENSMUSG00000029050 Ski 2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088|MGC8300 ski sarcoma viral oncogene homolog (avian) 0.076923 0.605096 0.972706 chr8-614 chr8 129478978 129479134 + 25.4 NA exon (NM_001164598, exon 1 of 2) exon (NM_001164598, exon 1 of 2) 470 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.121795 0.707006 8.732426 chr12-557 chr12 37456323 37456479 + 25.4 NA Intergenic Intergenic -162410 NM_008584 17286 Mm.341398 NM_008584 ENSMUSG00000036144 Meox2 AI528662|Gax|Mox-2|Mox2 mesenchyme homeobox 2 0.000000 0.445860 -0.277935 chr4-656 chr4 48336071 48336227 + 25.4 NA intron (NM_010569, intron 3 of 16) intron (NM_010569, intron 3 of 16) 35248 NM_010569 16348 Mm.317706 NM_010569 ENSMUSG00000028344 Invs AI428552|AW455512|MGC141481|Nphp2|inv inversin 0.006410 0.452229 -2.317078 chr13-372 chr13 29604409 29604565 + 25.4 NA intron (NM_144536, intron 9 of 15) intron (NM_144536, intron 9 of 15) 258566 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.012821 0.484076 -3.151979 chr18-351 chr18 57774561 57774717 + 25.4 NA intron (NM_029290, intron 5 of 6) intron (NM_029290, intron 5 of 6) -96873 NR_015494 75084 Mm.243841 XM_901621 4930511M06Rik - RIKEN cDNA 4930511M06 gene 0.006410 0.426752 -3.734108 chr11-849 chr11 98795680 98795836 + 25.4 NA Intergenic Intergenic 3348 NM_178596 353155 Mm.453253 NM_178596 ENSMUSG00000047197 Gjd3 Gja11|Gjc1|cx30.2 gap junction protein, delta 3 0.012821 0.496815 -3.285413 chr10-599 chr10 128150758 128150914 + 25.4 NA promoter-TSS (NM_001170869) promoter-TSS (NM_001170869) 9 NM_030100 78428 Mm.27358 NM_001170869 Wibg A030010B05Rik|Pym within bgcn homolog (Drosophila) 0.057692 0.624204 -3.700038 chr4-833 chr4 141434945 141435101 + 25.4 NA intron (NM_001109685, intron 2 of 7) intron (NM_001109685, intron 2 of 7) 47261 NM_144531 71529 Mm.477412 NM_001109684 ENSMUSG00000040606 9030409G11Rik 2310007B04Rik|AI256607|AI666764|AW061099|Kaz|Kazrin RIKEN cDNA 9030409G11 gene 0.032051 0.547771 -4.553042 chr4-714 chr4 88938202 88938358 + 25.4 NA Intergenic Intergenic -156012 NM_007670 12579 Mm.423094 NM_007670 ENSMUSG00000073802 Cdkn2b AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) 0.006410 0.484076 -4.337399 chr9-589 chr9 39348812 39348968 + 25.4 NA intron (NM_178737, intron 7 of 19) intron (NM_178737, intron 7 of 19) 5805 NM_178737 244810 Mm.208855 NM_178737 ENSMUSG00000038112 AW551984 3222402N16 expressed sequence AW551984 0.006410 0.484076 -3.649423 chr9-715 chr9 96998141 96998297 + 25.4 NA Intergenic Intergenic -77826 NM_138756 192287 Mm.475433 NM_138756 ENSMUSG00000032449 Slc25a36 C330005L02Rik solute carrier family 25, member 36 0.012821 0.445860 -1.009215 chr7-589 chr7 139248987 139249143 + 25.4 NA intron (NM_001127363, intron 1 of 15) intron (NM_001127363, intron 1 of 15) 8637 NM_001127363 212111 Mm.28308 NM_001127363 ENSMUSG00000025477 Inpp5a - inositol polyphosphate-5-phosphatase A 0.019231 0.611465 -4.767300 chr18-353 chr18 61823593 61823749 + 25.4 NA intron (NM_172832, intron 5 of 5) intron (NM_172832, intron 5 of 5) 9333 NM_172832 240334 Mm.234457 NM_172832 ENSMUSG00000024579 Pcyox1l BC060677|C630049M13 prenylcysteine oxidase 1 like 0.012821 0.477707 -6.920729 chr7-598 chr7 141326705 141326861 + 25.4 NA promoter-TSS (NM_025593) promoter-TSS (NM_025593) 224 NM_053082 64540 Mm.245355 NM_053082 ENSMUSG00000025511 Tspan4 AI325509|AI746565|D130042I01Rik|MGC102386|NAG-2|Tm4sf7|Tspan-4 tetraspanin 4 0.160256 0.707006 -8.934511 chr6-465 chr6 24614916 24615072 + 25.4 NA promoter-TSS (NM_001167745) promoter-TSS (NM_001167745) 11 NM_001167745 73178 Mm.1574 NM_001167745 ENSMUSG00000029684 Wasl 2900021I12Rik|3110031I02Rik|N-WASP Wiskott-Aldrich syndrome-like (human) 0.141026 0.751592 -8.748370 chr2-850 chr2 138516385 138516541 + 25.4 NA Intergenic Intergenic 5094 NR_035477 100316816 NR_035477 Mir1952 mmu-mir-1952 microRNA mir-1952 0.019231 0.464968 -0.444714 chr11-762 chr11 70545751 70545907 + 25.4 NA 3' UTR (NM_153103, exon 23 of 23) 3' UTR (NM_153103, exon 23 of 23) 29087 NM_153103 16562 Mm.99996 NM_153103 ENSMUSG00000020821 Kif1c B430105J22Rik|D11Bwg1349e|Ltxs1|MGC28766 kinesin family member 1C 0.006410 0.528662 7.154613 chr12-526 chr12 16403104 16403260 + 25.4 NA Intergenic MT2A|LTR|ERVL 212068 NM_015763 14245 Mm.153625 NM_001130412 ENSMUSG00000020593 Lpin1 4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188 lipin 1 0.025641 0.445860 4.408769 chr11-773 chr11 75394892 75395048 + 25.4 NA Intergenic L2|LINE|L2 -9332 NM_008850 18738 Mm.3128 NM_008850 ENSMUSG00000017781 Pitpna Pitpn|vb|vibrator phosphatidylinositol transfer protein, alpha 0.019231 0.560510 0.801250 chr11-823 chr11 88876485 88876641 + 25.4 NA 5' UTR (NM_019505, exon 1 of 11) 5' UTR (NM_019505, exon 1 of 11) 275 NM_019505 56077 Mm.153695 NM_019505 ENSMUSG00000000276 Dgke C87606|DAGK6|DGK diacylglycerol kinase, epsilon 0.121795 0.726115 -2.862083 chr10-466 chr10 41340961 41341117 + 25.4 NA Intergenic Intergenic -64871 NM_001177571 75973 Mm.228517 NM_001177571 ENSMUSG00000075225 Ccdc162 5033413D22Rik|Gm61 coiled-coil domain containing 162 0.006410 0.458599 -3.862084 chr7-586 chr7 135599874 135600030 + 25.4 NA Intergenic Intergenic -45230 NM_001081117 17345 Mm.4078 XM_001000692 ENSMUSG00000031004 Mki67 D630048A14Rik|Ki-67|Ki67 antigen identified by monoclonal antibody Ki 67 0.025641 0.394904 0.716585 chr14-203 chr14 11694109 11694265 + 25.4 NA Intergenic Intergenic -77841 NM_012061 27062 Mm.260881 NM_001042617 ENSMUSG00000054423 Cadps AU067781|CAPS|CAPS1|MGC90712|mKIAA1121 Ca2+-dependent secretion activator 0.000000 0.426752 -1.438562 chr16-323 chr16 26702305 26702461 + 25.4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 202824 NM_001013761 239789 Mm.326909 NM_001013761 ENSMUSG00000068428 Gm606 Gemc1|Gm1778 predicted gene 606 0.000000 0.439490 -4.602168 chr13-362 chr13 14405331 14405487 + 25.4 NA promoter-TSS (NM_008944) promoter-TSS (NM_008944) 42 NM_008944 19166 Mm.252255 NM_008944 ENSMUSG00000015671 Psma2 Lmpc3 proteasome (prosome, macropain) subunit, alpha type 2 0.070513 0.515924 -7.260130 chr4-653 chr4 47169681 47169837 + 25.4 NA Intergenic B1_Mur2|SINE|Alu 56707 NM_172693 230145 Mm.132246 NM_172693 ENSMUSG00000039774 Galnt12 9130206E10|A630062B03Rik UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 0.006410 0.484076 1.623959 chr11-746 chr11 65695408 65695564 + 25.4 NA intron (NM_001099633, intron 59 of 68) intron (NM_001099633, intron 59 of 68) 72048 NM_026107 52712 Mm.340052 NM_026107 ENSMUSG00000018347 Zkscan6 1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18 zinc finger with KRAB and SCAN domains 6 0.006410 0.414013 -3.003338 chr1-1110 chr1 172385914 172386070 + 25.4 NA intron (NM_001109985, intron 1 of 9) intron (NM_001109985, intron 1 of 9) 7793 NM_027528 70729 Mm.65316 NM_001109985 ENSMUSG00000038473 Nos1ap 6330408P19Rik|Capon nitric oxide synthase 1 (neuronal) adaptor protein 0.019231 0.484076 -0.283658 chr1-879 chr1 53856549 53856705 + 25.4 NA intron (NM_001001883, intron 13 of 28) intron (NM_001001883, intron 13 of 28) -126867 NM_133810 98267 Mm.25559 NM_133810 ENSMUSG00000026094 Stk17b 3110009A03Rik|AI120141|Drak2 serine/threonine kinase 17b (apoptosis-inducing) 0.006410 0.433121 -2.578766 chr12-620 chr12 74826828 74826984 + 25.4 NA 5' UTR (NM_010431, exon 1 of 15) 5' UTR (NM_010431, exon 1 of 15) 202 NM_010431 15251 Mm.446610 NM_010431 ENSMUSG00000021109 Hif1a AA959795|HIF1alpha|MOP1|bHLHe78 hypoxia inducible factor 1, alpha subunit 0.102564 0.694268 1.777958 chr2-808 chr2 102911969 102912125 + 25.4 NA Intergenic Intergenic 37534 NM_019735 56369 Mm.24772 XM_001480555 ENSMUSG00000010911 Apip APIP2|CGI-29|Mmrp19 APAF1 interacting protein 0.006410 0.452229 -4.177282 chr9-630 chr9 57093867 57094023 + 25.4 NA Intergenic Intergenic -33209 NM_028820 74211 Mm.428905 NM_028820 ENSMUSG00000032300 1700017B05Rik AA682102|D9Ertd278e|MGC144191 RIKEN cDNA 1700017B05 gene 0.012821 0.407643 6.134844 chr15-434 chr15 98395729 98395885 + 25.4 NA promoter-TSS (NM_009833) promoter-TSS (NM_009833) -137 NM_009833 12455 Mm.86538 NM_009833 ENSMUSG00000011960 Ccnt1 2810478G24Rik|AI115585|CycT1 cyclin T1 0.115385 0.617834 -6.195327 chr7-591 chr7 139615935 139616091 + 25.4 NA Intergenic Intergenic -69480 NM_177469 52389 Mm.39863 NM_177469 ENSMUSG00000025475 Gpr123 2900059M17Rik|D7Ertd680e G protein-coupled receptor 123 0.012821 0.458599 0.596014 chr9-621 chr9 53429817 53429973 + 25.4 NA promoter-TSS (NM_027807) promoter-TSS (NM_027807) 7 NM_001161618 75717 Mm.481537 NM_001161618 ENSMUSG00000032030 Cul5 4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1 cullin 5 0.147436 0.751592 -4.969816 chr9-616 chr9 51047035 51047191 + 25.4 NA intron (NM_027217, intron 3 of 4) intron (NM_027217, intron 3 of 4) 34034 NM_027217 69809 Mm.75315 XM_134800 ENSMUSG00000036027 1810046K07Rik - RIKEN cDNA 1810046K07 gene 0.032051 0.503185 2.906844 chr10-445 chr10 15450391 15450547 + 25.4 NA Intergenic Intergenic 999983 NM_008703 18101 Mm.481215 NM_008703 ENSMUSG00000019865 Nmbr BB182387 neuromedin B receptor 0.012821 0.363057 1.506476 chr9-703 chr9 92096866 92097022 + 25.4 NA intron (NM_008880, intron 6 of 7) intron (NM_008880, intron 6 of 7) -16203 NM_001033184 78459 Mm.179195 NM_001033184 ENSMUSG00000074139 1700057G04Rik - RIKEN cDNA 1700057G04 gene 0.000000 0.528662 -2.105194 chr5-950 chr5 122930220 122930376 + 25.4 NA intron (NM_001038839, intron 8 of 12) intron (NM_001038839, intron 8 of 12) 25771 NM_001038839 18439 Mm.42026 NM_001038839 ENSMUSG00000029468 P2rx7 AI467586|P2X(7)|P2X7R purinergic receptor P2X, ligand-gated ion channel, 7 0.025641 0.407643 4.437405 chr13-460 chr13 96873741 96873897 + 25.4 NA intron (NM_027711, intron 2 of 35) intron (NM_027711, intron 2 of 35) 76201 NM_010170 14064 Mm.440952 NM_010170 ENSMUSG00000021675 F2rl2 F730031A08|PAR3 coagulation factor II (thrombin) receptor-like 2 0.012821 0.420382 -3.377870 chr1-1078 chr1 159469503 159469659 + 25.4 NA Intergenic Intergenic 106735 NM_001159986 89867 Mm.87114 NM_001159986 ENSMUSG00000026589 Sec16b Lztr2|Rgpr|Rgpr-p117 SEC16 homolog B (S. cerevisiae) 0.000000 0.439490 -6.609120 chr5-875 chr5 100057901 100058057 + 25.4 NA Intergenic Intergenic -88617 NR_030692 319818 Mm.448257 XM_001475144 ENSMUSG00000056908 A930011G23Rik - RIKEN cDNA A930011G23 gene 0.012821 0.426752 -3.845235 chr17-471 chr17 32829220 32829376 + 25.4 NA intron (NM_001024950, intron 1 of 3) intron (NM_001024950, intron 1 of 3) 3128 NM_001024950 240068 Mm.121392 NM_001024950 ENSMUSG00000067424 Zfp563 D10628|D130054H01|NTfin7|Zfp413 zinc finger protein 563 0.057692 0.611465 -7.936840 chr5-739 chr5 5093529 5093685 + 25.4 NA intron (NM_011074, intron 8 of 14) intron (NM_011074, intron 8 of 14) 292650 NM_011074 18647 Mm.404502 NM_011074 ENSMUSG00000028926 Cdk14 Pftk1|mKIAA0834 cyclin-dependent kinase 14 0.000000 0.426752 -5.699196 chr1-1094 chr1 166995568 166995724 + 25.4 NA intron (NM_032005, intron 1 of 7) intron (NM_032005, intron 1 of 7) 1802 NM_032005 83993 Mm.190649 NM_032005 ENSMUSG00000026572 Tbx19 AU019250|D1Ertd754e|Tpit T-box 19 0.025641 0.452229 -0.448609 chr19-226 chr19 28989094 28989250 + 25.4 NA 3' UTR (NM_198651, exon 13 of 13) 3' UTR (NM_198651, exon 13 of 13) -40744 NM_028922 74411 Mm.441887 NM_028922 ENSMUSG00000040105 Ppapdc2 4932443D16Rik phosphatidic acid phosphatase type 2 domain containing 2 0.000000 0.324841 3.044596 chr6-619 chr6 113809240 113809396 + 25.4 NA intron (NM_009723, intron 3 of 21) intron (NM_009723, intron 3 of 21) 47835 NM_001036684 11941 Mm.321755 NM_001036684 ENSMUSG00000030302 Atp2b2 D6Abb2e|PMCA2|dfw|jog|wms|wri ATPase, Ca++ transporting, plasma membrane 2 0.012821 0.605096 -5.108557 chr18-385 chr18 84092721 84092877 + 25.4 NA Intergenic Intergenic 127956 NM_001081300 110796 Mm.102136 NM_001081300 ENSMUSG00000046982 Tshz1 5730407I04Rik|D18Bwg1409e|KIAA4206|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1 teashirt zinc finger family member 1 0.006410 0.490446 -4.776264 chr16-350 chr16 48731738 48731894 + 25.4 NA Intergenic Intergenic -4665 NM_023881 57263 Mm.21123 NM_023881 ENSMUSG00000022650 Retnlb 9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3 resistin like beta 0.019231 0.464968 -1.330491 chr17-401 chr17 9678842 9678998 + 25.4 NA Intergenic Intergenic -165859 NM_001163836 67543 Mm.26987 NM_001163836 Pabpc6 4932702K14Rik|AI428050|MGC132900|Pabpc3 poly(A) binding protein, cytoplasmic 6 0.006410 0.464968 1.885369 chr2-821 chr2 116848208 116848364 + 25.4 NA intron (NM_033524, intron 2 of 6) intron (NM_033524, intron 2 of 6) -28281 NR_030440 732489 NR_030440 Mir674 Mirn674|mmu-mir-674 microRNA 674 0.006410 0.394904 -5.891662 chr1-1037 chr1 134149090 134149246 + 25.4 NA intron (NM_028778, intron 1 of 6) intron (NM_028778, intron 1 of 6) 5485 NM_028778 74137 Mm.445779 NM_001195025 ENSMUSG00000009772 Nuak2 1200013B22Rik|Omphk2|Snark|mKIAA0537 NUAK family, SNF1-like kinase, 2 0.012821 0.496815 -8.049819 chr14-270 chr14 65314356 65314512 + 25.4 NA intron (NM_019675, intron 5 of 5) intron (NM_019675, intron 5 of 5) 15950 NM_019675 56471 Mm.35474 NM_019675 ENSMUSG00000022044 Stmn4 Lagl|R75359|RB3 stathmin-like 4 0.000000 0.452229 -7.359414 chr14-246 chr14 33908422 33908578 + 25.4 NA intron (NM_008166, intron 4 of 15) intron (NM_008166, intron 4 of 15) 184800 NR_029774 723847 NR_029774 Mir346 Mirn346|mmu-mir-346 microRNA 346 0.000000 0.464968 -0.312774 chr5-1008 chr5 141419256 141419412 + 25.4 NA Intergenic Intergenic -74673 NM_177879 330222 Mm.406697 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik sidekick homolog 1 (chicken) 0.000000 0.445860 4.993439 chr10-547 chr10 92691329 92691485 + 25.4 NA intron (NM_013508, intron 3 of 4) intron (NM_013508, intron 3 of 4) 49551 NM_013508 13713 Mm.4454 NM_013508 ENSMUSG00000008398 Elk3 D430049E23Rik|Erp|Etrp|Net|Sap-2 ELK3, member of ETS oncogene family 0.032051 0.496815 -7.704970 chr9-665 chr9 66913322 66913478 + 25.4 NA Intergenic Intergenic -65043 NM_001164251 22003 Mm.121878 NM_001164248 ENSMUSG00000032366 Tpm1 AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM tropomyosin 1, alpha 0.012821 0.515924 -1.145068 chr8-515 chr8 64168676 64168832 + 25.4 NA intron (NM_021506, intron 2 of 11) intron (NM_021506, intron 2 of 11) 52442 NM_021506 59009 Mm.27949 NM_021506 ENSMUSG00000031642 Sh3rf1 2200003J05Rik|Posh|R75531|Sh3md2 SH3 domain containing ring finger 1 0.006410 0.496815 8.838872 chr14-198 chr14 7012654 7012810 + 25.4 NA intron (NM_027782, intron 1 of 2) intron (NM_027782, intron 1 of 2) 4829 NM_027782 71393 Mm.292712 NM_027782 ENSMUSG00000021752 Kctd6 5430433B02Rik|AU044285 potassium channel tetramerisation domain containing 6 0.000000 0.464968 -2.262047 chr19-208 chr19 14546051 14546207 + 25.4 NA intron (NM_011600, intron 8 of 19) intron (NM_011600, intron 8 of 19) 118873 NM_011600 21888 Mm.103638 NM_011600 ENSMUSG00000024642 Tle4 5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333 transducin-like enhancer of split 4, homolog of Drosophila E(spl) 0.006410 0.407643 -0.170721 chr2-737 chr2 58010951 58011107 + 25.4 NA Intergenic Intergenic -35521 NM_139200 227929 Mm.479941 NM_139200 ENSMUSG00000026832 Cytip A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp cytohesin 1 interacting protein 0.012821 0.369427 -1.651693 chr7-527 chr7 112470406 112470562 + 25.4 NA promoter-TSS (NM_009346) promoter-TSS (NM_009346) -16 NM_001166584 21676 Mm.398985 NM_001166584 ENSMUSG00000055320 Tead1 2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1 TEA domain family member 1 0.115385 0.675159 -5.880018 chr7-604 chr7 142430960 142431116 + 25.4 NA Intergenic Intergenic 33348 NR_030251 723874 NR_030251 Mir483 Mirn483|mir-483|mmu-mir-483 microRNA 483 0.006410 0.426752 2.727467 chr10-488 chr10 67842277 67842433 + 25.4 NA intron (NM_028491, intron 5 of 7) intron (NM_028491, intron 5 of 7) 94877 NM_028491 73287 Mm.141830 NM_028491 ENSMUSG00000019945 1700040L02Rik - RIKEN cDNA 1700040L02 gene 0.012821 0.477707 1.046999 chr9-642 chr9 59531989 59532145 + 25.4 NA TTS (NM_001172071) TTS (NM_001172071) 16588 NM_001172069 71599 Mm.279070 NM_001172068 ENSMUSG00000051705 Senp8 9130010J17Rik|AU020827|Den1|Nedp1|Prsc2 SUMO/sentrin specific peptidase 8 0.006410 0.420382 -5.740916 chr3-553 chr3 89627092 89627248 + 25.4 NA intron (NM_080466, intron 1 of 7) intron (NM_080466, intron 1 of 7) 21080 NM_080466 140493 Mm.120250 NM_080466 ENSMUSG00000000794 Kcnn3 KCa2.3|MGC123421|MGC123422|SK3|SKCA3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 0.012821 0.547771 1.436999 chr8-464 chr8 18595179 18595335 + 25.4 NA 5' UTR (NM_173189, exon 1 of 14) 5' UTR (NM_173189, exon 1 of 14) 108 NM_173189 244329 Mm.235296 NM_173189 ENSMUSG00000039842 Mcph1 5430437K10Rik|BRIT1|D030046N04Rik|MCT|MGC66518 microcephaly, primary autosomal recessive 1 0.134615 0.757962 -10.173459 chr5-842 chr5 81995759 81995915 + 25.4 NA Intergenic Intergenic -100316 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.000000 0.439490 -4.283877 chr17-426 chr17 23952194 23952350 + 25.4 NA intron (NM_007634, intron 16 of 16) intron (NM_007634, intron 16 of 16) -3903 NM_028056 72016 Mm.23881 NM_028056 ENSMUSG00000024118 1600002H07Rik - RIKEN cDNA 1600002H07 gene 0.006410 0.503185 -3.335130 chr8-546 chr8 86558625 86558781 + 25.4 NA exon (NM_013641, exon 2 of 3) exon (NM_013641, exon 2 of 3) 1959 NM_013641 19216 Mm.474430 NM_013641 ENSMUSG00000019464 Ptger1 42kDa|EP1|Ptgerep1 prostaglandin E receptor 1 (subtype EP1) 0.141026 0.681529 -4.735832 chr13-431 chr13 59548587 59548743 + 25.4 NA intron (NM_001048008, intron 2 of 17) intron (NM_001048008, intron 2 of 17) 18277 NM_001048008 67269 Mm.212923 NM_001048008 ENSMUSG00000021557 Agtpbp1 1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|BB114605|CCP1|MGC90651|Nna1|mKIAA1035|nmf243|pcd ATP/GTP binding protein 1 0.006410 0.407643 -6.812987 chr12-592 chr12 59984928 59985084 + 25.4 NA promoter-TSS (NM_008891) promoter-TSS (NM_008891) 76 NM_008891 18949 Mm.22347 NM_008891 ENSMUSG00000020994 Pnn AU045199|D12Ertd512e pinin 0.108974 0.662420 -4.313395 chr4-779 chr4 123887850 123888006 + 25.4 NA Intergenic Intergenic -272020 NM_011141 18991 Mm.388885 NM_011141 ENSMUSG00000078236 Pou3f1 Oct-6|Oct6|Otf6|Scip|Test1|Tst-1|Tst1 POU domain, class 3, transcription factor 1 0.025641 0.407643 -5.725526 chr14-260 chr14 59440241 59440397 + 25.4 NA Intergenic Intergenic 107924 NM_001164705 72125 Mm.275499 NM_001164705 ENSMUSG00000021986 Fam123a 2600011E07Rik|Amer2 family with sequence similarity 123, member A 0.019231 0.458599 1.524701 chr9-592 chr9 42635881 42636037 + 25.4 NA intron (NM_175481, intron 1 of 20) intron (NM_175481, intron 1 of 20) 59407 NM_175481 110637 Mm.370291 NM_175481 ENSMUSG00000032017 Grik4 6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1 glutamate receptor, ionotropic, kainate 4 0.019231 0.394904 0.776825 chr3-650 chr3 146855896 146856052 + 25.4 NA intron (NM_027594, intron 10 of 20) intron (NM_027594, intron 10 of 20) 66222 NM_027594 70892 Mm.187793 XM_001005473 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|Ttll7s tubulin tyrosine ligase-like family, member 7 0.012821 0.515924 1.777958 chr9-572 chr9 27675820 27675976 + 25.4 NA intron (NM_177906, intron 1 of 7) intron (NM_177906, intron 1 of 7) 135184 NM_177906 330908 Mm.379474 NM_177906 ENSMUSG00000062257 Opcml 2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|MGC99974|Obcam opioid binding protein/cell adhesion molecule-like 0.006410 0.426752 -2.839998 chr1-1140 chr1 188200725 188200881 + 25.4 NA Intergenic Intergenic 205977 NM_009367 21808 Mm.18213 NM_009367 ENSMUSG00000039239 Tgfb2 BB105277|Tgf-beta2|Tgfb-2 transforming growth factor, beta 2 0.019231 0.439490 -2.190550 chr14-263 chr14 62366957 62367113 + 25.4 NA intron (NM_007549, intron 1 of 12) intron (NM_007549, intron 1 of 12) 4262 NM_007549 12143 Mm.3962 NM_007549 ENSMUSG00000014453 Blk - B lymphoid kinase 0.000000 0.528662 0.828838 chr4-631 chr4 41159558 41159714 + 25.4 NA promoter-TSS (NM_023739) promoter-TSS (NM_023739) 23 NM_023739 74164 Mm.439181 NM_023739 ENSMUSG00000028423 Nfx1 1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 0.102564 0.675159 -2.411487 chr6-454 chr6 8847102 8847258 + 25.4 NA Intergenic Intergenic -52838 NM_008751 18231 Mm.46954 XM_001474333 ENSMUSG00000046178 Nxph1 C130005L03Rik neurexophilin 1 0.019231 0.426752 -4.703070 chr11-856 chr11 100879603 100879759 + 25.4 NA 3' UTR (NM_016920, exon 22 of 22) 3' UTR (NM_016920, exon 22 of 22) -6502 NM_013792 27419 Mm.95452 NM_013792 ENSMUSG00000001751 Naglu - alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) 0.025641 0.585987 -2.152222 chr12-715 chr12 109031713 109031869 + 25.4 NA intron (NM_001163394, intron 1 of 13) intron (NM_001163394, intron 1 of 13) -21781 NM_001163395 14026 Mm.238841 NM_001163394 ENSMUSG00000021262 Evl AI528774 Ena-vasodilator stimulated phosphoprotein 0.000000 0.426752 3.015078 chr11-763 chr11 70554062 70554218 + 25.4 NA Intergenic Intergenic -26501 NM_177565 193043 Mm.40966 XM_001001755 ENSMUSG00000043602 Zfp3 AI854635|B230309J24|Fnp-1|RP23-326P7.13|Zfp-3 zinc finger protein 3 0.012821 0.605096 3.957881 chr1-885 chr1 59670370 59670526 + 25.4 NA Intergenic Intergenic 21095 NR_028521 100217421 NR_028521 Snord11 MBII-95 small nucleolar RNA, C/D box 11 0.025641 0.541401 -5.959632 chr6-584 chr6 91454529 91454685 + 25.4 NA TTS (NM_009531) TTS (NM_009531) 15353 NM_028766 74122 Mm.38801 NM_028766 ENSMUSG00000030095 Tmem43 1200015A22Rik|LUMA transmembrane protein 43 0.006410 0.407643 -7.671197 chr9-742 chr9 116067724 116067880 + 25.4 NA Intergenic Intergenic -43741 NM_009371 21813 Mm.172346 NM_009371 ENSMUSG00000032440 Tgfbr2 1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII transforming growth factor, beta receptor II 0.006410 0.528662 -3.424119 chr13-484 chr13 103766525 103766681 + 25.4 NA Intergenic Intergenic -47336 NM_008533 17079 Mm.373974 NM_008533 ENSMUSG00000021624 Cd180 F630107B15|Ly78|RP105 CD180 antigen 0.044872 0.477707 -1.578232 chr15-442 chr15 101822352 101822508 + 25.4 NA Intergenic Intergenic 9946 NM_031170 16691 Mm.358618 NM_031170 ENSMUSG00000049382 Krt8 AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8|MGC118110 keratin 8 0.006410 0.471338 -3.446224 chr5-1028 chr5 146994179 146994335 + 25.4 NA Intergenic Intergenic -98669 NM_001010941 14738 Mm.153539 NM_001010941 ENSMUSG00000041468 Gpr12 Gpcr01|Gpcr12|Gpcr20|Gpcr21 G-protein coupled receptor 12 0.032051 0.573248 1.379140 chr11-789 chr11 80434754 80434910 + 25.4 NA intron (NM_177390, intron 16 of 21) intron (NM_177390, intron 16 of 21) 141592 NM_009871 12569 Mm.474282 NM_009871 ENSMUSG00000048895 Cdk5r1 Cdk5r|D11Bwg0379e|p25|p35 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 0.012821 0.369427 -5.114497 chr7-454 chr7 64769026 64769182 + 25.4 NA intron (NM_183087, intron 2 of 9) intron (NM_183087, intron 2 of 9) -17114 NM_023239 66647 Mm.19944 NM_023239 ENSMUSG00000070520 Ndnl2 5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1 necdin-like 2 0.012821 0.496815 -1.996658 chr5-1016 chr5 142765384 142765540 + 25.4 NA intron (NM_178702, intron 2 of 14) intron (NM_178702, intron 2 of 14) 17088 NM_019943 56522 Mm.441372 NM_019943 ENSMUSG00000074817 Papolb PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap poly (A) polymerase beta (testis specific) 0.006410 0.528662 2.938113 chr16-331 chr16 30265010 30265166 + 25.4 NA intron (NM_001128094, intron 16 of 32) intron (NM_001128094, intron 16 of 32) -34562 NM_008148 14729 Mm.3519 NM_008148 ENSMUSG00000047953 Gp5 GPV glycoprotein 5 (platelet) 0.012821 0.445860 -0.171544 chr11-709 chr11 51107984 51108140 + 25.4 NA intron (NM_007714, intron 1 of 12) intron (NM_007714, intron 1 of 12) 1469 NM_007714 12750 Mm.239354 NM_007714 ENSMUSG00000020385 Clk4 AI987988|C85119 CDC like kinase 4 0.006410 0.509554 -2.523525 chr16-379 chr16 91436199 91436355 + 25.4 NA intron (NM_008338, intron 1 of 6) intron (NM_008338, intron 1 of 6) 325 NM_008338 15980 Mm.249364 NM_008338 ENSMUSG00000022965 Ifngr2 Ifgr2|Ifgt interferon gamma receptor 2 0.070513 0.630573 -0.466845 chr5-932 chr5 118064571 118064727 + 25.4 NA Intergenic Intergenic -63499 NM_008712 18125 Mm.442195 NM_008712 ENSMUSG00000029361 Nos1 2310005C01Rik|NO|NOS-I|Nos-1|bNOS|nNOS nitric oxide synthase 1, neuronal 0.019231 0.477707 7.839434 chr18-304 chr18 24966665 24966821 + 25.4 NA intron (NM_175276, intron 3 of 26) intron (NM_175276, intron 3 of 26) 114289 NM_175276 225288 Mm.329322 NM_175276 ENSMUSG00000034295 Fhod3 A930009H06Rik|FHOS2|KIAA1695|mKIAA1695 formin homology 2 domain containing 3 0.006410 0.426752 -3.106479 chr9-669 chr9 68606184 68606340 + 25.4 NA intron (NM_013646, intron 1 of 10) intron (NM_013646, intron 1 of 10) 41753 NR_033299 320440 NM_177159 9530091C08Rik - RIKEN cDNA 9530091C08 gene 0.000000 0.445860 -2.256466 chr11-673 chr11 19865521 19865677 + 25.4 NA intron (NM_033523, intron 1 of 5) intron (NM_033523, intron 1 of 5) 41155 NM_033523 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 sprouty-related, EVH1 domain containing 2 0.012821 0.496815 4.908093 chr3-487 chr3 27018364 27018520 + 25.4 NA intron (NM_027583, intron 4 of 9) intron (NM_027583, intron 4 of 9) 189739 NM_027583 70862 Mm.330943 NM_027583 ENSMUSG00000039335 Spata16 4921511F01Rik|4930503K02Rik|Nyd-sp12 spermatogenesis associated 16 0.006410 0.439490 0.172891 chr11-813 chr11 87956948 87957104 + 25.4 NA intron (NM_198013, intron 1 of 10) intron (NM_198013, intron 1 of 10) -28733 NM_001172099 103841 Mm.374846 NM_001172099 ENSMUSG00000018378 Cuedc1 AI841487|C330016O16Rik CUE domain containing 1 0.019231 0.503185 -1.763940 chr14-213 chr14 20010480 20010636 + 25.4 NA intron (NM_134079, intron 4 of 10) intron (NM_134079, intron 4 of 10) 169374 NM_134079 11534 Mm.188734 NM_134079 ENSMUSG00000039197 Adk 2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak|MGC6593 adenosine kinase 0.000000 0.375796 -0.194633 chr18-366 chr18 75426478 75426634 + 25.4 NA Intergenic Intergenic -66173 NM_001042660 17131 Mm.34407 NM_001042660 ENSMUSG00000025880 Smad7 Madh7 MAD homolog 7 (Drosophila) 0.006410 0.611465 -1.329487 chr12-737 chr12 113352027 113352183 + 25.4 NA Intergenic Intergenic 25198 NM_010588 16450 Mm.186146 NM_010588 ENSMUSG00000002799 Jag2 D12Ggc2e|Serh|mJagged2-1|sm jagged 2 0.032051 0.573248 -1.700911 chr3-581 chr3 105190484 105190640 + 25.4 NA Intergenic Intergenic -9360 NM_030249 80281 Mm.200327 NM_001163332 ENSMUSG00000062127 Cttnbp2nl AA552995|AA589392|AU018624|BC003236|MGC7720|mKIAA1433 CTTNBP2 N-terminal like 0.006410 0.458599 1.434058 chr8-497 chr8 46738845 46739001 + 25.4 NA Intergenic B4A|SINE|B4 21925 NM_028066 109821 Mm.33326 NM_028066 ENSMUSG00000031645 F11 1600027G01Rik|AI503996|Cf11|FXI coagulation factor XI 0.019231 0.477707 0.363158 chr5-894 chr5 108729659 108729815 + 25.4 NA intron (NM_172716, intron 8 of 10) intron (NM_172716, intron 8 of 10) 28104 NM_172716 69587 Mm.261218 NM_172716 ENSMUSG00000033623 Pcgf3 2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3 polycomb group ring finger 3 0.000000 0.509554 -1.316878 chr11-906 chr11 115117008 115117164 + 25.4 NA Intergenic B3A|SINE|B2 -3450 NM_178035 328035 Mm.21995 NM_178035 ENSMUSG00000044788 Fads6 BC044804|OTTMUSG00000021749 fatty acid desaturase domain family, member 6 0.025641 0.503185 -4.730965 chr2-882 chr2 163790962 163791118 + 25.4 NA intron (NM_021420, intron 7 of 10) intron (NM_021420, intron 7 of 10) 25422 NM_021420 58231 Mm.479158 NM_021420 ENSMUSG00000018209 Stk4 AI447339|AU020804|Kas-2|Mst1|Ysk3 serine/threonine kinase 4 0.019231 0.573248 3.603209 chr11-879 chr11 108181353 108181509 + 25.4 NA Intergenic Intergenic -21453 NM_011101 18750 Mm.222178 NM_011101 ENSMUSG00000050965 Prkca AI875142|Pkca protein kinase C, alpha 0.019231 0.560510 1.172648 chr2-833 chr2 121977795 121977951 + 25.4 NA intron (NM_177610, intron 21 of 31) intron (NM_177610, intron 21 of 31) 11733 NM_177610 214593 Mm.358846 NM_177610 ENSMUSG00000068452 Duox2 A430065P05Rik|LNOX2|NOXEF2|P138-TOX|THOX2 dual oxidase 2 0.025641 0.560510 -1.538783 chr11-893 chr11 111778406 111778562 + 25.4 NA Intergenic Intergenic 748962 NR_024085 217294 Mm.441922 XM_001476709 BC006965 MGC6956|MGC6983 cDNA sequence BC006965 0.006410 0.356688 1.436999 chr11-670 chr11 18873060 18873216 + 25.4 NA intron (NM_010789, intron 7 of 11) intron (NM_010789, intron 7 of 11) 45834 NM_010789 17268 Mm.445192 NM_001193271 ENSMUSG00000020160 Meis1 C530044H18Rik|Evi8 Meis homeobox 1 0.000000 0.388535 -2.555389 chr18-344 chr18 56064842 56064846 + 25.4 NA Intergenic GSAT_MM|Satellite|Satellite -492656 NM_026240 107022 Mm.24356 NM_026240 ENSMUSG00000001700 Gramd3 9030613F08Rik|9130427A09Rik|AW061306|NS3TP2 GRAM domain containing 3 0.250000 0.600000 -10000000000.000000 chr17-464 chr17 31048240 31048396 + 25.4 NA intron (NM_153062, intron 6 of 19) intron (NM_153062, intron 6 of 19) 24126 NM_153062 224674 Mm.311395 NM_153062 ENSMUSG00000024036 Slc37a1 G3PP|MGC28167 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 0.012821 0.554140 -5.393538 chr4-738 chr4 104340039 104340195 + 25.4 NA intron (NM_146148, intron 7 of 10) intron (NM_146148, intron 7 of 10) 34213 NM_146148 230558 Mm.197638 NM_146148 ENSMUSG00000035031 C8a MGC29381 complement component 8, alpha polypeptide 0.006410 0.503185 -5.107406 chr1-848 chr1 37254135 37254291 + 25.4 NA intron (NM_030266, intron 1 of 25) intron (NM_030266, intron 1 of 25) 9775 NM_030266 269180 Mm.5294 NM_030266 ENSMUSG00000026113 Inpp4a 107kDa|9630012D15|D130048C09Rik|R74740 inositol polyphosphate-4-phosphatase, type I 0.000000 0.458599 4.930385 chr2-666 chr2 13935757 13935913 + 25.4 NA Intergenic Intergenic 37954 NM_001012396 30963 Mm.241205 NM_001012396 ENSMUSG00000063275 Ptpla HACD1 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a 0.000000 0.343949 -2.733864 chr2-742 chr2 58808194 58808350 + 25.4 NA intron (NM_001001178, intron 8 of 14) intron (NM_001001178, intron 8 of 14) 153194 NM_001001178 227933 Mm.432280 XM_906580 ENSMUSG00000036641 Ccdc148 5830402J09 coiled-coil domain containing 148 0.012821 0.471338 1.729805 chr12-714 chr12 108803825 108803981 + 25.4 NA intron (NM_010010, intron 10 of 14) intron (NM_010010, intron 10 of 14) 21716 NM_010010 13116 Mm.41911 NM_010010 ENSMUSG00000021259 Cyp46a1 Cyp46 cytochrome P450, family 46, subfamily a, polypeptide 1 0.000000 0.503185 -0.699527 chr11-785 chr11 79905518 79905674 + 25.4 NA promoter-TSS (NM_001029856) promoter-TSS (NM_001029856) 2 NM_001029856 237877 Mm.89551 NM_001029856 ENSMUSG00000017550 Atad5 C130052G03Rik|FLJ12735|FRAG1|Gm17 ATPase family, AAA domain containing 5 0.121795 0.643312 -5.125227 chr5-794 chr5 43448454 43448610 + 25.4 NA intron (NR_028417, intron 6 of 7) intron (NR_028417, intron 6 of 7) -73178 NM_175937 231207 Mm.7233 NM_001177379 ENSMUSG00000039782 Cpeb2 A630055H10Rik cytoplasmic polyadenylation element binding protein 2 0.025641 0.452229 3.412203 chr11-668 chr11 17780650 17780806 + 25.4 NA Intergenic L1_Mus2|LINE|L1 73150 NM_026576 68145 Mm.178684 NM_026576 ENSMUSG00000016984 Etaa1 5730466H23Rik|AA672646 Ewing's tumor-associated antigen 1 0.012821 0.407643 -2.697426 chr5-959 chr5 125852756 125852912 + 25.4 NA intron (NM_001190352, intron 1 of 8) intron (NM_001190352, intron 1 of 8) 30956 NM_001190352 208151 Mm.40397 XM_915709 Tmem132b AK220418|KIAA1786|mKIAA1786 transmembrane protein 132B 0.006410 0.433121 -5.771133 chr4-756 chr4 108498380 108498536 + 25.4 NA promoter-TSS (NM_146150) promoter-TSS (NM_146150) -278 NM_146150 230598 Mm.442231 NM_146150 ENSMUSG00000053510 Nrd1 2600011I06Rik|AI875733|MGC25477|NRD-C nardilysin, N-arginine dibasic convertase, NRD convertase 1 0.076923 0.573248 -7.392340 chr11-711 chr11 51314074 51314230 + 25.4 NA intron (NM_153393, intron 2 of 28) intron (NM_153393, intron 2 of 28) -114027 NM_028398 72947 Mm.480373 NM_028398 ENSMUSG00000020359 Agxt2l2 2900006B13Rik alanine-glyoxylate aminotransferase 2-like 2 0.006410 0.484076 4.140902 chr12-540 chr12 26372052 26372208 + 25.4 NA Intergenic Intergenic 629394 NM_001081977 108089 Mm.214932 NM_001081977 ENSMUSG00000020642 Rnf144a AI316797|Rnf144|UIP4|Ubce7ip4 ring finger protein 144A 0.019231 0.515924 -3.559128 chr10-519 chr10 80580730 80580886 + 25.4 NA exon (NM_007907, exon 2 of 14) exon (NM_007907, exon 2 of 14) 1049 NM_007907 13629 Mm.393589 NM_007907 ENSMUSG00000034994 Eef2 Ef-2|MGC98463 eukaryotic translation elongation factor 2 0.032051 0.566879 -4.454404 chr17-477 chr17 34589793 34589949 + 25.4 NA promoter-TSS (NM_030597) promoter-TSS (NM_030597) -44 NM_001110101 27756 Mm.165735 NM_001110101 ENSMUSG00000007050 Lsm2 D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|MGC13889|Sm-X5|SmX5|snRNP LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.083333 0.605096 9.980277 chr14-222 chr14 23483445 23483601 + 25.4 NA Intergenic Intergenic 160378 NM_011297 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 MGC107549 ribosomal protein S24 0.051282 0.547771 -8.102553 chr4-698 chr4 83792515 83792671 + 25.4 NA intron (NM_172870, intron 4 of 5) intron (NM_172870, intron 4 of 5) 353724 NM_172870 242509 Mm.190774 NM_172870 ENSMUSG00000028487 Bnc2 5031434M05Rik|8430420F16Rik|MGC124423|MGC124424 basonuclin 2 0.000000 0.445860 1.179224 chr5-1042 chr5 151615095 151615251 + 25.4 NA Intergenic Intergenic -156601 NM_146258 243362 Mm.209272 NM_001163493 ENSMUSG00000016128 Stard13 DLC2|GT650|MGC38133 StAR-related lipid transfer (START) domain containing 13 0.025641 0.541401 -6.821183 chr7-505 chr7 108874480 108874636 + 25.4 NA promoter-TSS (NM_001038624) promoter-TSS (NM_001038624) -57 NM_178780 320360 Mm.71007 NM_001038624 ENSMUSG00000048330 Ric3 E130307J04Rik resistance to inhibitors of cholinesterase 3 homolog (C. elegans) 0.121795 0.662420 -8.197248 chr6-524 chr6 56029299 56029455 + 25.4 NA TTS (NM_001159960) TTS (NM_001159960) 82285 NM_011153 19051 Mm.42096 NM_011153 ENSMUSG00000002930 Gsbs Ppp1r2 G substrate 0.006410 0.394904 -1.411937 chr14-256 chr14 55469383 55469539 + 25.4 NA intron (NM_001033043, intron 33 of 36) intron (NM_001033043, intron 33 of 36) 56495 NM_001014996 219103 Mm.212525 NM_001014996 ENSMUSG00000064128 Cenpj 4932437H03Rik|CPAP|Gm81|LAP|LIP1|MGC102215 centromere protein J 0.006410 0.484076 2.199185 chr4-685 chr4 80790863 80791019 + 25.4 NA intron (NM_010820, intron 25 of 46) intron (NM_010820, intron 25 of 46) 123095 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.000000 0.414013 0.149907 chr9-568 chr9 25253921 25254077 + 25.4 NA intron (NM_026189, intron 2 of 7) intron (NM_026189, intron 2 of 7) 22957 NM_026189 67484 Mm.112977 NM_026189 ENSMUSG00000036611 Eepd1 2310005P05Rik|AI481005 endonuclease/exonuclease/phosphatase family domain containing 1 0.000000 0.414013 1.803050 chr15-346 chr15 37504572 37504728 + 25.4 NA intron (NM_001170866, intron 4 of 6) intron (NM_001170866, intron 4 of 6) -100679 NM_001170867 52589 Mm.283370 NM_001170866 ENSMUSG00000051359 Ncald AI848120|D030020D09Rik|D15Ertd412e neurocalcin delta 0.006410 0.433121 -1.059678 chr1-1102 chr1 169132961 169133117 + 25.4 NA Intergenic Intergenic -11237 NM_030724 80914 Mm.440156 NM_030724 ENSMUSG00000026558 Uck2 AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk uridine-cytidine kinase 2 0.019231 0.541401 -1.482968 chr12-666 chr12 87517394 87517550 + 25.4 NA Intergenic Intergenic -50330 NM_177354 238328 Mm.216101 NM_177354 ENSMUSG00000021256 Vash1 AI834978|D930046M13Rik|G630009D10Rik vasohibin 1 0.019231 0.369427 -6.977026 chr11-864 chr11 102957256 102957412 + 25.4 NA Intergenic Intergenic 7886 NM_027658 71059 Mm.273871 NM_001130515 ENSMUSG00000043372 Hexim2 4933402L21Rik hexamthylene bis-acetamide inducible 2 0.025641 0.605096 -4.740856 chr4-785 chr4 126857822 126857978 + 25.4 NA exon (NM_010291, exon 2 of 2) exon (NM_010291, exon 2 of 2) -1515 NM_008127 14621 Mm.56906 NM_008127 ENSMUSG00000046623 Gjb4 Cnx30.3|Cx30.3|Gjb-4 gap junction protein, beta 4 0.044872 0.554140 -3.832566 chr16-369 chr16 84544637 84544793 + 25.4 NA Intergenic Intergenic -52016 NR_029565 387173 Mm.261808 NR_029565 Mir155 Mirn155|mmu-mir-155 microRNA 155 0.012821 0.541401 -6.722136 chr11-689 chr11 28632298 28632454 + 25.4 NA Intergenic Intergenic -13814 NR_030419 735308 NR_030419 Mir216b Mirn216b microRNA 216b 0.000000 0.363057 -3.564353 chrX-110 chrX 125384446 125384602 + 25.4 NA intron (NM_172493, intron 17 of 26) intron (NM_172493, intron 17 of 26) 288436 NM_017398 54004 Mm.10763 NM_017398 ENSMUSG00000034480 Diap2 Dia3|Diaph2|Drf2|E430022I22Rik diaphanous homolog 2 (Drosophila) 0.012821 0.388535 4.569630 chr15-326 chr15 27882276 27882432 + 25.4 NA intron (NM_001081302, intron 1 of 56) intron (NM_001081302, intron 1 of 56) 88083 NM_001081302 223435 Mm.479896 XM_001474968 ENSMUSG00000022263 Trio 6720464I07Rik|AA408740|Solo triple functional domain (PTPRF interacting) 0.032051 0.566879 2.367975 chr15-375 chr15 66626839 66626995 + 25.4 NA intron (NM_001029841, intron 2 of 7) intron (NM_001029841, intron 2 of 7) 15345 NM_009192 20491 Mm.7601 NM_001029841 ENSMUSG00000022372 Sla Slap|Slap-1 src-like adaptor 0.012821 0.458599 1.179224 chr4-815 chr4 136553963 136554119 + 25.4 NA intron (NM_009523, intron 1 of 4) intron (NM_009523, intron 1 of 4) 4331 NM_009523 22417 Mm.20355 NM_009523 ENSMUSG00000036856 Wnt4 MGC123964|Wnt-4 wingless-related MMTV integration site 4 0.006410 0.547771 -6.535979 chr3-614 chr3 127368364 127368520 + 25.4 NA Intergenic Intergenic -168807 NR_030403 723948 NR_030403 Mir302b Mirn302b microRNA 302b 0.019231 0.458599 -6.947871 chr15-426 chr15 94877595 94877751 + 25.4 NA intron (NM_178789, intron 6 of 7) intron (NM_178789, intron 6 of 7) 99825 NR_015482 100043315 Mm.159041 XM_001480558 ENSMUSG00000033303 LOC100043315 - hypothetical LOC100043315 0.012821 0.439490 -1.805465 chr4-793 chr4 128879326 128879482 + 25.4 NA intron (NM_028603, intron 1 of 4) intron (NM_028603, intron 1 of 4) 928 NM_028603 73680 Mm.32997 NM_028603 ENSMUSG00000028807 Zbtb8a 2410081M15Rik|AI480941 zinc finger and BTB domain containing 8a 0.096154 0.541401 -7.985719 chr5-947 chr5 121493050 121493206 + 25.4 NA Intergenic B3A|SINE|B2 28011 NM_011290 19988 Mm.262021 NM_011290 ENSMUSG00000029614 Rpl6 MGC117949|Taxreb107 ribosomal protein L6 0.012821 0.445860 2.774508 chr12-686 chr12 100928417 100928573 + 25.4 NA Intergenic tRNA-Ala-GCY_|tRNA|tRNA -6623 NM_001033213 104718 Mm.295441 XM_127105 ENSMUSG00000033530 Ttc7b AA408451|Ttc7l1 tetratricopeptide repeat domain 7B 0.019231 0.452229 -8.332342 chr5-1041 chr5 151506587 151506743 + 25.4 NA Intergenic Intergenic -48093 NM_146258 243362 Mm.209272 NM_001163493 ENSMUSG00000016128 Stard13 DLC2|GT650|MGC38133 StAR-related lipid transfer (START) domain containing 13 0.006410 0.375796 2.635792 chr2-912 chr2 174106856 174107012 + 25.4 NA exon (NM_025983, exon 1 of 3) exon (NM_025983, exon 1 of 3) 106 NM_025983 67126 Mm.20841 NM_025983 ENSMUSG00000016252 Atp5e 2410043G19Rik|ATPE|AV000645 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit 0.102564 0.681529 -2.521053 chr7-462 chr7 74289280 74289436 + 25.4 NA intron (NM_023908, intron 2 of 9) intron (NM_023908, intron 2 of 9) 138935 NM_023908 108116 Mm.425467 NM_001038643 ENSMUSG00000025790 Slco3a1 5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11 solute carrier organic anion transporter family, member 3a1 0.006410 0.414013 -4.078529 chr3-517 chr3 58801094 58801250 + 25.4 NA Intergenic Intergenic -20855 NM_009174 20439 Mm.2847 NM_009174 ENSMUSG00000036432 Siah2 AA415433|Sinh2 seven in absentia 2 0.006410 0.407643 -0.520366 chr2-771 chr2 73946822 73946978 + 25.4 NA Intergenic Intergenic -234767 NM_175015 228033 Mm.2966 NM_175015 ENSMUSG00000018770 Atp5g3 6030447M23|MGC124584 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) 0.012821 0.503185 -4.233483 chr5-849 chr5 84943872 84944028 + 25.4 NA Intergenic Lx4A|LINE|L1 -514194 NM_153801 243078 Mm.126783 NM_153801 ENSMUSG00000049537 Tecrl D330017N19Rik|MGC130344|MGC130345|Srd5a2l2 trans-2,3-enoyl-CoA reductase-like 0.000000 0.439490 -1.572934 chr5-978 chr5 134461004 134461160 + 25.4 NA exon (NM_033572, exon 1 of 11) exon (NM_033572, exon 1 of 11) 312 NM_033572 94254 Mm.29508 NM_033572 ENSMUSG00000061979 Wbscr16 5730496C04Rik|AU019812 Williams-Beuren syndrome chromosome region 16 homolog (human) 0.102564 0.732484 -4.556655 chr16-394 chr16 94001335 94001491 + 25.4 NA intron (NM_011377, intron 6 of 10) intron (NM_011377, intron 6 of 10) 27614 NM_011377 20465 Mm.4775 NM_011377 ENSMUSG00000062713 Sim2 bHLHe15 single-minded homolog 2 (Drosophila) 0.012821 0.484076 -8.828636 chr8-601 chr8 126726791 126726947 + 25.4 NA TTS (NM_028536) TTS (NM_028536) 19430 NM_028536 73420 Mm.157746 NM_028536 ENSMUSG00000031971 1700054N08Rik AI853424 RIKEN cDNA 1700054N08 gene 0.006410 0.426752 1.933333 chr17-546 chr17 78996554 78996710 + 25.4 NA Intergenic ID_B1|SINE|B4 39669 NM_027455 70536 Mm.293870 NM_027455 ENSMUSG00000024084 Qpct 5730422A13Rik glutaminyl-peptide cyclotransferase (glutaminyl cyclase) 0.025641 0.458599 -0.471522 chr4-724 chr4 96624820 96624976 + 25.4 NA Intergenic LTR33|LTR|ERVL -347720 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 OTTMUSG00000008003 predicted gene 12695 0.006410 0.439490 -1.671368 chr5-809 chr5 53562766 53562922 + 25.4 NA intron (NM_001145433, intron 1 of 2) intron (NM_001145433, intron 1 of 2) 7491 NM_001145433 66278 Mm.442576 XM_913511 ENSMUSG00000061461 1810013D10Rik 1110067B18Rik|N28078 RIKEN cDNA 1810013D10 gene 0.006410 0.394904 1.278494 chr4-848 chr4 148388718 148388874 + 25.4 NA promoter-TSS (NM_001141930) promoter-TSS (NM_001141930) -120 NM_001141930 67087 Mm.474667 NM_001141930 ENSMUSG00000028988 Ctnnbip1 1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat catenin beta interacting protein 1 0.044872 0.611465 -4.046240 chr15-364 chr15 57368262 57368418 + 25.4 NA Intergenic Intergenic -60632 NM_172378 210463 Mm.26555 NM_172378 ENSMUSG00000022366 BC026439 MGC31374|oat-pg cDNA sequence BC026439 0.006410 0.433121 0.197300 chr5-985 chr5 136091339 136091495 + 25.4 NA Intergenic Intergenic -11315 NM_021403 58212 Mm.271230 NM_021403 ENSMUSG00000039860 Srrm3 2900083I11Rik|AB041661|SRm300-like|Srrm2l serine/arginine repetitive matrix 3 0.057692 0.636943 -7.633451 chr8-438 chr8 11008033 11008189 + 25.4 NA exon (NM_001081212, exon 1 of 2) exon (NM_001081212, exon 1 of 2) 291 NM_001081212 384783 Mm.407207 NM_001081212 Irs2 Irs-2 insulin receptor substrate 2 0.115385 0.605096 -4.653011 chr9-608 chr9 48247361 48247517 + 25.4 NA promoter-TSS (NM_144948) promoter-TSS (NM_144948) 128 NM_001004191 434402 Mm.386950 XM_001479948 ENSMUSG00000042293 Gm5617 EG434402|MGC5739 predicted gene 5617 0.134615 0.643312 -8.100906 chr5-879 chr5 101449171 101449327 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 362719 NM_172715 231510 Mm.271911 NM_172715 ENSMUSG00000029314 Agpat9 4933407I02Rik|4933408F15|A230097K15Rik 1-acylglycerol-3-phosphate O-acyltransferase 9 0.006410 0.401274 -5.120075 chr7-448 chr7 61957609 61957765 + 25.4 NA Intergenic Intergenic -96434 NR_015599 320026 Mm.131850 NR_015599 A330076H08Rik - RIKEN cDNA A330076H08 gene 0.000000 0.535032 -6.430132 chr15-362 chr15 55677480 55677636 + 25.4 NA intron (NM_016667, intron 1 of 6) intron (NM_016667, intron 1 of 6) 59474 NM_016667 20649 Mm.309425 NM_016667 ENSMUSG00000060429 Sntb1 - syntrophin, basic 1 0.012821 0.433121 -6.482411 chr7-544 chr7 118111019 118111175 + 25.4 NA Intergenic Intergenic 76042 NR_027879 67745 NM_183267 4930583K01Rik - RIKEN cDNA 4930583K01 gene 0.025641 0.394904 -3.021579 chr1-1125 chr1 182789630 182789786 + 25.4 NA intron (NM_144794, intron 5 of 22) intron (NM_144794, intron 5 of 22) 10516 NM_144794 208795 Mm.185518 NM_144794 ENSMUSG00000026519 Tmem63a BC014795|MGC11687|MGC25803|Tmem64a transmembrane protein 63a 0.019231 0.522293 -4.500543 chr5-928 chr5 117540351 117540507 + 25.4 NA Intergenic RSINE1|SINE|B4 8165 NM_018858 23980 Mm.473809 NM_018858 ENSMUSG00000032959 Pebp1 HCNP|MGC102065|MGC103131|Pbp|Pbp1|Pbpr phosphatidylethanolamine binding protein 1 0.000000 0.509554 1.535135 chr8-551 chr8 93212883 93213039 + 25.4 NA intron (NM_172913, intron 1 of 6) intron (NM_172913, intron 1 of 6) 25396 NM_172913 244579 Mm.302755 NM_172913 ENSMUSG00000043668 Tox3 500-9|BC052044|C230068E13|CAGF9|Tnrc9 TOX high mobility group box family member 3 0.012821 0.331210 0.852378 chrX-83 chrX 6290353 6290509 + 25.4 NA Intergenic Intergenic 55242 NM_016691 12728 Mm.254370 NM_016691 ENSMUSG00000004317 Clcn5 5430408K11Rik|ClC-5|Clc5|D930009B12Rik|DXImx42e|Sfc13|T25545 chloride channel 5 0.000000 0.426752 -3.564475 chr11-923 chr11 120129660 120129816 + 25.4 NA Intergenic Intergenic 34836 NM_009609 11465 Mm.426706 NM_009609 ENSMUSG00000062825 Actg1 AL023024|Actg|Actl|E51|MGC117491|MGC28612 actin, gamma, cytoplasmic 1 0.012821 0.452229 1.457398 chrX-91 chrX 47192733 47192889 + 25.4 NA Intergenic Intergenic -5474 NM_001190332 385354 Mm.393050 NM_001190332 Frmd7 EG665849|Gm1533 FERM domain containing 7 0.000000 0.388535 -1.671393 chr10-481 chr10 61587718 61587874 + 25.4 NA intron (NM_197996, intron 4 of 7) intron (NM_197996, intron 4 of 7) 38779 NM_197996 70423 Mm.416781 NM_197996 ENSMUSG00000037031 Tspan15 1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15 tetraspanin 15 0.012821 0.541401 -4.285808 chr1-1149 chr1 192926051 192926207 + 25.4 NA Intergenic Intergenic -42181 NM_007498 11910 Mm.2706 NM_007498 ENSMUSG00000026628 Atf3 LRG-21 activating transcription factor 3 0.006410 0.445860 -0.718979 chr5-904 chr5 111649048 111649204 + 25.4 NA Intergenic Intergenic -9342 NM_001081235 433938 Mm.332576 NM_001081235 ENSMUSG00000070576 Mn1 AA003644|AA009236 meningioma 1 0.032051 0.598726 -4.981359 chr7-574 chr7 132069920 132070076 + 25.4 NA Intergenic MIRm|SINE|MIR -76914 NM_018867 55987 Mm.471654 NM_018867 ENSMUSG00000030862 Cpxm2 4632435C11Rik|CPX-2|Cpx2 carboxypeptidase X 2 (M14 family) 0.019231 0.464968 -0.204740 chr2-776 chr2 75727436 75727592 + 25.4 NA 3' UTR (NM_172666, exon 20 of 20) 3' UTR (NM_172666, exon 20 of 20) 11787 NM_028235 72421 Mm.275109 NM_028235 ENSMUSG00000075273 Ttc30b 2510042P03Rik|Tcc30b tetratricopeptide repeat domain 30B 0.019231 0.420382 -3.819305 chr1-934 chr1 75131355 75131511 + 25.4 NA intron (NM_008985, intron 20 of 22) intron (NM_008985, intron 20 of 22) 11584 NM_001159885 56812 Mm.480347 NM_001159883 ENSMUSG00000026203 Dnajb2 2700059H22Rik|Dnajb10|Hsj1|MGC113758|mDj8 DnaJ (Hsp40) homolog, subfamily B, member 2 0.006410 0.579618 -6.202116 chr1-906 chr1 66401036 66401192 + 25.4 NA promoter-TSS (NM_175510) promoter-TSS (NM_175510) -540 NM_175510 329178 Mm.44798 XM_001471865 ENSMUSG00000055567 Unc80 C030018G13Rik|C230061B10Rik|UNC-80 unc-80 homolog (C. elegans) 0.038462 0.585987 -4.679730 chr8-584-Dup1 chr8 124465276 124465285 + 25.4 NA promoter-TSS (NM_133765) promoter-TSS (NM_133765) -422 NM_133765 76454 Mm.24829 NM_133765 ENSMUSG00000031811 Fbxo31 2310046N15Rik|Fbx14|Fbxo14 F-box protein 31 0.000000 0.700000 -10000000000.000000 chr15-369 chr15 59353864 59354020 + 25.4 NA intron (NM_026746, intron 4 of 6) intron (NM_026746, intron 4 of 6) -124392 NM_144549 211770 Mm.40298 NM_144549 ENSMUSG00000032501 Trib1 A530090O15Rik|TRB-1|Trb1 tribbles homolog 1 (Drosophila) 0.032051 0.522293 2.809974 chr1-1000 chr1 107899246 107899402 + 25.4 NA Intergenic Intergenic 81372 NM_001122675 227449 Mm.210188 XM_001478125 ENSMUSG00000038866 Zcchc2 9930114B20Rik|AW212015 zinc finger, CCHC domain containing 2 0.006410 0.458599 -4.853086 chr1-907 chr1 66484182 66484338 + 25.4 NA exon (NM_175510, exon 20 of 65) exon (NM_175510, exon 20 of 65) 82606 NM_175510 329178 Mm.44798 XM_001471865 ENSMUSG00000055567 Unc80 C030018G13Rik|C230061B10Rik|UNC-80 unc-80 homolog (C. elegans) 0.012821 0.464968 -3.485933 chr13-500 chr13 117109882 117110038 + 25.4 NA Intergenic Intergenic 320410 NM_021459 16392 Mm.42242 NM_021459 ENSMUSG00000042258 Isl1 - ISL1 transcription factor, LIM/homeodomain 0.000000 0.445860 -4.227352 chr7-494 chr7 98236474 98236630 + 25.4 NA promoter-TSS (NM_001168539) promoter-TSS (NM_001168539) -32 NM_001168539 244152 Mm.25317 NM_001024619 ENSMUSG00000049580 Tsku 9530051K01Rik|E2ig4|Lrrc54|Tsk tsukushin 0.121795 0.719745 -4.925023 chr1-862 chr1 39723761 39723917 + 25.4 NA Intergenic Intergenic 26039 NM_001177348 100042065 Mm.209678 XM_001477250 Gm3646 - predicted gene 3646 0.019231 0.490446 -5.503488 chr16-364 chr16 78505409 78505565 + 25.4 NA Intergenic Intergenic -46227 NM_025967 67102 Mm.37332 XM_001473183 ENSMUSG00000022864 D16Ertd472e 1700010I10Rik|2310009O17Rik|AI256766|AW536354|E330003K22Rik|Eurl DNA segment, Chr 16, ERATO Doi 472, expressed 0.006410 0.471338 -3.741996 chr13-358 chr13 12614694 12614850 + 25.4 NA Intergenic Intergenic -6234 NM_026184 67475 Mm.358706 NM_026184 ENSMUSG00000057069 Ero1lb 1300013B24Rik|1700065B09Rik|AI447560|MGC77955|ero1-beta ERO1-like beta (S. cerevisiae) 0.025641 0.420382 1.179224 chr2-659 chr2 6296292 6296448 + 25.4 NA intron (NM_181399, intron 1 of 13) intron (NM_181399, intron 1 of 13) 26363 NM_181399 98910 Mm.40673 NM_001080548 ENSMUSG00000039046 Usp6nl AI316785|RNTRE|TRE2NL|mKIAA0019 USP6 N-terminal like 0.012821 0.509554 -5.156691 chr19-237 chr19 37441261 37441417 + 25.4 NA promoter-TSS (NM_010615) promoter-TSS (NM_010615) -207 NM_010615 16551 Mm.42203 NM_010615 ENSMUSG00000012443 Kif11 Eg5|Kif8|Kifl1|Knsl1 kinesin family member 11 0.083333 0.630573 -6.098154 chr15-408 chr15 84188739 84188895 + 25.4 NA Intergenic Intergenic 34933 NM_001162500 64099 Mm.251356 NM_001162500 ENSMUSG00000022439 Parvg AI413459 parvin, gamma 0.000000 0.535032 -3.451707 chr6-543 chr6 72571534 72571690 + 25.4 NA intron (NM_009332, intron 4 of 11) intron (NM_009332, intron 4 of 11) -25103 NM_009443 22134 Mm.246563 XM_001471628 ENSMUSG00000056429 Tgoln1 AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1 trans-golgi network protein 0.025641 0.484076 -2.927620 chr5-815 chr5 64172858 64173014 + 25.4 NA intron (NM_029554, intron 2 of 3) intron (NM_029554, intron 2 of 3) 75096 NM_145923 100532 Mm.480645 NM_145923 ENSMUSG00000047881 Rell1 AA536743 RELT-like 1 0.000000 0.420382 -3.418952 chr5-971 chr5 131285370 131285526 + 25.4 NA intron (NM_145218, intron 5 of 10) intron (NM_145218, intron 5 of 10) 306777 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.006410 0.401274 -5.780963 chr8-483 chr8 36133103 36133259 + 25.4 NA Intergenic Intergenic -142945 NM_176933 319520 Mm.392187 NM_176933 ENSMUSG00000031530 Dusp4 2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2 dual specificity phosphatase 4 0.012821 0.407643 0.593673 chr3-548 chr3 88740601 88740757 + 25.4 NA Intergenic Intergenic -1610 NM_181817 242093 Mm.269130 NM_181817 ENSMUSG00000049741 Rxfp4 GPCR142|Gpr100|MGC130215|Rln3r2|SALPR relaxin family peptide receptor 4 0.012821 0.471338 -3.151336 chr15-399 chr15 80228707 80228863 + 25.4 NA Intergenic Intergenic 114293 NM_001044308 239556 Mm.291058 NM_001044308 ENSMUSG00000022416 Cacna1i - calcium channel, voltage-dependent, alpha 1I subunit 0.006410 0.490446 -0.842920 chr11-908 chr11 116659734 116659890 + 25.4 NA promoter-TSS (NM_033398) promoter-TSS (NM_033398) 208 NM_028865 74319 Mm.348004 NM_028865 ENSMUSG00000020815 1110005A03Rik 1500035B17Rik|4933424L15Rik RIKEN cDNA 1110005A03 gene 0.115385 0.726115 -3.673659 chr3-490 chr3 28049258 28049414 + 25.4 NA Intergenic Intergenic 38105 NM_001164437 208613 Mm.59189 XM_149293 ENSMUSG00000043164 Tmem212 E030011K20Rik|Gm564 transmembrane protein 212 0.012821 0.490446 -4.791725 chr16-384 chr16 92687701 92687857 + 25.4 NA intron (NM_001111022, intron 2 of 6) intron (NM_001111022, intron 2 of 6) 26827 NM_001111021 12394 Mm.470227 NM_001111021 ENSMUSG00000022952 Runx1 AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b runt related transcription factor 1 0.006410 0.439490 1.179223 chr17-538 chr17 65020305 65020461 + 25.4 NA Intergenic Intergenic 419988 NM_001008973 381107 Mm.141275 NM_001008973 ENSMUSG00000045036 Tmem232 E130009J12Rik|Gm940|Tes13-L|Tes13-S transmembrane protein 232 0.032051 0.439490 -3.866333 chr11-800 chr11 84786988 84787144 + 25.4 NA Intergenic Intergenic 13118 NM_007607 12351 Mm.1641 NM_007607 ENSMUSG00000000805 Car4 AW456718|Ca4 carbonic anhydrase 4 0.019231 0.547771 7.102551 chr5-1030 chr5 147603452 147603608 + 25.4 NA Intergenic Intergenic 14068 NM_007673 12591 Mm.477171 NM_007673 ENSMUSG00000029646 Cdx2 Cdx-2 caudal type homeobox 2 0.012821 0.598726 3.135809 chr19-209 chr19 16064105 16064261 + 25.4 NA Intergenic Intergenic -12175 NM_198019 208518 Mm.105652 NM_198019 ENSMUSG00000041491 Cep78 5730599I05Rik|D030027P05 centrosomal protein 78 0.019231 0.509554 0.500623 chr2-814 chr2 104909812 104909968 + 25.4 NA intron (NR_015462, intron 1 of 6) intron (NR_015462, intron 1 of 6) 17459 NR_015462 329480 Mm.386083 NR_015462 AI314831 6030498F17 expressed sequence AI314831 0.025641 0.535032 -0.032687 chr19-213 chr19 17102372 17102528 + 25.4 NA intron (NM_181348, intron 6 of 19) intron (NM_181348, intron 6 of 19) 79314 NM_181348 353211 Mm.480716 NM_181348 Prune2 6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|KIAA0367|mKIAA0367 prune homolog 2 (Drosophila) 0.019231 0.439490 -2.847773 chr19-189 chr19 4196641 4196797 + 25.4 NA intron (NM_011237, intron 9 of 10) intron (NM_011237, intron 9 of 10) 4546 NM_031868 19045 Mm.1970 NM_031868 ENSMUSG00000040385 Ppp1ca Ppp1c|dism2 protein phosphatase 1, catalytic subunit, alpha isoform 0.019231 0.605096 -0.275805 chr1-813 chr1 13103833 13103989 + 25.4 NA intron (NM_001081209, intron 6 of 7) intron (NM_001081209, intron 6 of 7) 8466 NM_001081209 383491 Mm.309380 NM_001081209 ENSMUSG00000042414 Prdm14 - PR domain containing 14 0.038462 0.528662 2.774508 chr3-592 chr3 117400753 117400909 + 25.4 NA Intergenic Intergenic -47951 NM_177664 229791 Mm.140138 NM_177664 ENSMUSG00000044667 D3Bwg0562e A330086D10|Lppr4|PRG-1|mKIAA0455 DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed 0.006410 0.439490 -4.134492 chr9-728 chr9 108424988 108425144 + 25.4 NA 5' UTR (NM_023247, exon 1 of 5) 5' UTR (NM_023247, exon 1 of 5) 379 NM_023247 66706 Mm.29471 NM_023247 ENSMUSG00000070283 Ndufaf3 4733401H18Rik NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3 0.102564 0.617834 -1.572935 chr3-536 chr3 84478567 84478723 + 25.4 NA Intergenic L1MC1|LINE|L1 87711 NM_001033301 229474 Mm.481803 NM_001033301 ENSMUSG00000041842 Fhdc1 6330505N24Rik|Gm126 FH2 domain containing 1 0.025641 0.433121 -2.494933 chr17-483 chr17 36566491 36566647 + 25.4 NA promoter-TSS (NM_023162) promoter-TSS (NM_023162) -75 NM_029602 76416 Mm.26684 NM_029602 ENSMUSG00000036214 Znrd1as 1700022C21Rik|AI746295 ZNRD1 antisense RNA 0.115385 0.649682 -5.639260 chr1-1015 chr1 127369866 127370022 + 25.4 NA Intergenic Intergenic -18617 NM_028787 74150 Mm.28654 NM_028787 ENSMUSG00000026342 Slc35f5 1300003P13Rik|AI646727 solute carrier family 35, member F5 0.006410 0.490446 -3.025107 chr1-961 chr1 81830021 81830177 + 25.4 NA Intergenic Intergenic 340364 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.000000 0.464968 1.306061 chr10-594 chr10 127673374 127673530 + 25.4 NA promoter-TSS (NM_019963) promoter-TSS (NM_019963) -72 NM_019963 20847 Mm.293120 NM_019963 ENSMUSG00000040033 Stat2 1600010G07Rik|AW496480 signal transducer and activator of transcription 2 0.096154 0.643312 -2.835211 chr11-726 chr11 57789954 57790110 + 25.4 NA Intergenic Intergenic -35226 NM_028451 73158 Mm.248843 XM_126172 ENSMUSG00000037331 Larp1 1810024J12Rik|3110040D16Rik|Larp|mKIAA0731 La ribonucleoprotein domain family, member 1 0.012821 0.407643 -5.519851 chr17-526 chr17 56960617 56960773 + 25.4 NA Intergenic CpG -3739 NM_001163816 22324 Mm.248172 NM_001163815 ENSMUSG00000034116 Vav1 Vav|vav-T vav 1 oncogene 0.044872 0.585987 -7.817100 chr3-488 chr3 27185827 27185983 + 25.4 NA Intergenic MTD|LTR|MaLR 159022 NM_007900 13605 Mm.261453 NM_001177625 ENSMUSG00000027699 Ect2 AI528536|KIAA4037|mKIAA4037 ect2 oncogene 0.019231 0.445860 -4.784117 chr11-702 chr11 48677809 48677965 + 25.4 NA intron (NM_053166, intron 1 of 6) intron (NM_053166, intron 1 of 6) 8327 NM_053166 94089 Mm.390335 NM_053166 ENSMUSG00000040350 Trim7 AI790312 tripartite motif-containing 7 0.044872 0.503185 -3.725264 chr15-324 chr15 27440349 27440505 + 25.4 NA intron (NM_020332, intron 1 of 11) intron (NM_020332, intron 1 of 11) 29026 NM_020332 11732 Mm.265264 NM_020332 ENSMUSG00000022265 Ank Ankh|D15Ertd221e|ank|mKIAA1581 progressive ankylosis 0.006410 0.426752 1.039315 chr5-757 chr5 25040259 25040415 + 25.4 NA 5' UTR (NR_027388, exon 1 of 1) 5' UTR (NR_027388, exon 1 of 1) 255 NR_027388 73571 Mm.478163 NR_027388 1700096K18Rik - RIKEN cDNA 1700096K18 gene 0.108974 0.649682 -5.850500 chr5-1017 chr5 142772884 142773040 + 25.4 NA intron (NM_178702, intron 2 of 14) intron (NM_178702, intron 2 of 14) 9588 NM_019943 56522 Mm.441372 NM_019943 ENSMUSG00000074817 Papolb PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap poly (A) polymerase beta (testis specific) 0.019231 0.464968 -6.281657 chr3-511 chr3 55335986 55336142 + 25.4 NA intron (NM_019978, intron 2 of 16) intron (NM_019978, intron 2 of 16) 5610 NM_001111053 13175 Mm.472264 NM_001111051 ENSMUSG00000027797 Dclk1 1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369 doublecortin-like kinase 1 0.012821 0.369427 -3.843306 chr8-520 chr8 71012165 71012321 + 25.4 NA Intergenic L2|LINE|L2 -108680 NM_177698 234353 Mm.32525 NM_027626 ENSMUSG00000030465 Psd3 4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D|MGC6957 pleckstrin and Sec7 domain containing 3 0.012821 0.458599 3.031927 chr6-556 chr6 84716349 84716505 + 25.4 NA intron (NM_177077, intron 19 of 21) intron (NM_177077, intron 19 of 21) -156861 NM_001177713 232174 Mm.255246 NM_001177713 ENSMUSG00000063415 Cyp26b1 CP26|P450RAI-2 cytochrome P450, family 26, subfamily b, polypeptide 1 0.025641 0.515924 -3.683180 chr9-696 chr9 85210691 85210847 + 25.4 NA Intergenic Intergenic -86901 NM_001160379 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.006410 0.426752 -6.070566 chr3-643 chr3 144652138 144652294 + 25.4 NA intron (NM_019464, intron 1 of 8) intron (NM_019464, intron 1 of 8) 5493 NM_019464 54673 Mm.474936 NM_019464 ENSMUSG00000037062 Sh3glb1 AA409932|AI314629|AU015566|Bif-1|KIAA0491|mKIAA0491 SH3-domain GRB2-like B1 (endophilin) 0.038462 0.547771 -3.872823 chr1-1009 chr1 121024341 121024497 + 25.4 NA Intergenic Intergenic -143254 NM_001081125 14633 Mm.273292 NM_001081125 ENSMUSG00000048402 Gli2 AW546128 GLI-Kruppel family member GLI2 0.019231 0.554140 -3.793112 chr11-644 chr11 3524660 3524816 + 25.4 NA Intergenic Intergenic 22798 NR_002322 544752 Mm.471608 NR_002321 Tug1 AI316828 taurine upregulated gene 1 0.000000 0.350318 0.978053 chr3-528 chr3 79314407 79314563 + 25.4 NA Intergenic Intergenic -82683 NM_001099624 76089 Mm.31220 XM_001473837 ENSMUSG00000062232 Rapgef2 5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP Rap guanine nucleotide exchange factor (GEF) 2 0.000000 0.439490 -2.368006 chr11-839 chr11 97615556 97615712 + 25.4 NA promoter-TSS (NM_010688) promoter-TSS (NM_010688) -127 NM_010688 16796 Mm.271967 NM_010688 ENSMUSG00000038366 Lasp1 AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma LIM and SH3 protein 1 0.134615 0.770701 -5.698061 chr9-693 chr9 83369816 83369972 + 25.4 NA intron (NM_172507, intron 1 of 3) intron (NM_172507, intron 1 of 3) 24839 NM_172507 212531 Mm.479969 NM_172507 ENSMUSG00000032261 Sh3bgrl2 A930014C21Rik|AA408038|B930089I21 SH3 domain binding glutamic acid-rich protein like 2 0.012821 0.509554 -6.210592 chr7-488 chr7 96318084 96318240 + 25.4 NA intron (NM_011858, intron 3 of 32) intron (NM_011858, intron 3 of 32) 193547 NR_030489 735284 NR_030489 Mir708 Mirn708|mmu-mir-708 microRNA 708 0.000000 0.426752 -10.278795 chr2-800 chr2 93681783 93681939 + 25.4 NA Intergenic Intergenic -11919 NM_001033452 381411 Mm.9889 NM_001033452 ENSMUSG00000075023 Accsl Gm1967 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like 0.006410 0.566879 -3.440012 chr15-330 chr15 31265399 31265555 + 25.4 NA intron (NM_001164441, intron 2 of 3) intron (NM_001164441, intron 2 of 3) 46871 NM_026153 67434 Mm.102470 NM_001164441 ENSMUSG00000022237 Ankrd33b 0610012A05Rik|3021401C12Rik|5730557B15Rik ankyrin repeat domain 33B 0.012821 0.547771 -2.930143 chr5-915 chr5 114287405 114287561 + 25.4 NA TTS (NM_026805) TTS (NM_026805) 22659 NM_010018 13142 Mm.20115 NM_010018 ENSMUSG00000042096 Dao AI987963|Dao-1|Dao1 D-amino acid oxidase 0.006410 0.541401 -1.562204 chr1-943 chr1 77204424 77204580 + 25.4 NA Intergenic Intergenic 193734 NM_007936 13838 Mm.400747 NM_007936 ENSMUSG00000026235 Epha4 2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb Eph receptor A4 0.006410 0.509554 -6.781872 chr12-589 chr12 57638591 57638747 + 25.4 NA intron (NM_001167976, intron 8 of 10) intron (NM_001167976, intron 8 of 10) 25019 NM_011041 18511 Mm.5035 NM_011041 ENSMUSG00000001497 Pax9 Pax-9 paired box gene 9 0.019231 0.528662 0.502077 chr1-858 chr1 39590946 39591102 + 25.4 NA intron (NM_170597, intron 2 of 3) intron (NM_170597, intron 2 of 3) 4704 NM_170597 263764 Mm.122091 NM_170597 ENSMUSG00000050967 Creg2 A830098L22Rik cellular repressor of E1A-stimulated genes 2 0.006410 0.503185 -3.872823 chr18-329 chr18 43211981 43212137 + 25.4 NA Intergenic Intergenic -27257 NM_028392 72930 Mm.26134 NM_027531 ENSMUSG00000024500 Ppp2r2b 2900026H06Rik|6330404L05Rik|E130009M08Rik|MGC113781|PP2A-PR55B|PR55-BETA|SCA12 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform 0.000000 0.471338 -7.704972 chr15-396 chr15 78797464 78797620 + 25.4 NA intron (NM_138579, intron 8 of 23) intron (NM_138579, intron 8 of 23) -12768 NM_001024716 110253 Mm.123714 NM_001024716 ENSMUSG00000033088 Triobp AI428493|EST478828|Tara|mKIAA1662 TRIO and F-actin binding protein 0.032051 0.477707 -0.315321 chr12-630 chr12 78054603 78054759 + 25.4 NA Intergenic Intergenic -103179 NM_016893 53618 Mm.35628 NM_016893 ENSMUSG00000021065 Fut8 - fucosyltransferase 8 0.012821 0.414013 -6.676768 chr5-920 chr5 115448337 115448493 + 25.4 NA Intergenic Intergenic -1295 NM_013879 29867 Mm.38551 NM_013879 ENSMUSG00000029544 Cabp1 - calcium binding protein 1 0.019231 0.560510 -5.548951 chr12-555 chr12 37172956 37173112 + 25.4 NA intron (NM_178629, intron 9 of 9) intron (NM_178629, intron 9 of 9) 281250 NM_178629 75847 Mm.261764 NM_178629 Ispd 4930579E17Rik|AV040780 isoprenoid synthase domain containing 0.019231 0.509554 -2.655354 chr5-745 chr5 14978668 14978824 + 25.4 NA intron (NR_001584, intron 2 of 3) intron (NR_001584, intron 2 of 3) 27447 NR_001584 74062 Mm.459025 NR_001584 Speer8-ps1 4933405L09Rik|SPEER-8|Speer8-ps spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1 0.000000 0.388535 -0.204740 chr10-511 chr10 79170744 79170900 + 25.4 NA promoter-TSS (NM_144528) promoter-TSS (NM_144528) -752 NR_027505 70294 Mm.466670 NM_144528 ENSMUSG00000035890 Rnf126 2610010O19Rik ring finger protein 126 0.070513 0.592357 -0.699549 chr6-466 chr6 26956541 26956697 + 25.4 NA Intergenic Lx4B|LINE|L1 930141 NR_030420 735266 NR_030420 Mir592 Mirn592|mir-592|mmu-mir-592 microRNA 592 0.006410 0.471338 -4.108047 chr1-951 chr1 79711841 79711997 + 25.4 NA intron (NM_009255, intron 1 of 8) intron (NM_009255, intron 1 of 8) 25770 NM_009255 20720 Mm.3093 NM_009255 ENSMUSG00000026249 Serpine2 B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4 serine (or cysteine) peptidase inhibitor, clade E, member 2 0.006410 0.515924 -4.944042 chr11-862 chr11 102513833 102513989 + 25.4 NA promoter-TSS (NM_025918) promoter-TSS (NM_025918) -96 NM_025918 52715 Mm.277638 NM_025918 ENSMUSG00000020925 Ccdc43 2610001E01Rik|D11Ertd707e coiled-coil domain containing 43 0.108974 0.675159 -3.700039 chr5-967 chr5 129984730 129984886 + 25.4 NA promoter-TSS (NM_172462) promoter-TSS (NM_172462) -12 NM_172462 22648 Mm.135067 NM_172462 ENSMUSG00000051034 Zfp11 6720465D24|Krox-6|Zfp-11 zinc finger protein 11 0.102564 0.643312 1.224972 chr15-344 chr15 36783252 36783408 + 25.4 NA Intergenic Intergenic -44203 NM_011740 22631 Mm.3360 NM_011740 ENSMUSG00000022285 Ywhaz 1110013I11Rik|AI596267|AL022924|AU020854 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 0.000000 0.401274 -2.215896 chr4-683 chr4 80383288 80383444 + 25.4 NA intron (NM_026821, intron 1 of 1) intron (NM_026821, intron 1 of 1) 1450 NM_026821 52829 Mm.273986 NM_026821 ENSMUSG00000048706 D4Bwg0951e 1110029A09Rik|AV077978|AV175137|WI-13707|bM350F23.1 DNA segment, Chr 4, Brigham & Women's Genetics 0951 expressed 0.012821 0.535032 -1.184763 chr2-782 chr2 80231753 80231909 + 25.4 NA intron (NM_011356, intron 2 of 5) intron (NM_011356, intron 2 of 5) 16404 NM_011356 20378 Mm.427436 NM_011356 ENSMUSG00000027004 Frzb Frp|Sfrp3|frezzled|fritz|frzb-1 frizzled-related protein 0.000000 0.458599 -4.795756 chrX-97 chrX 72851803 72851834 + 25.4 NA Intergenic SYNREP_MM|Satellite|Satellite 205750 NM_001033799 619294 Mm.423961 NM_001033799 ENSMUSG00000073085 4930428D18Rik - RIKEN cDNA 4930428D18 gene 0.000000 0.375000 -5.046662 chr15-357 chr15 43030516 43030672 + 25.4 NA Intergenic Intergenic -29702 NM_172815 239405 Mm.193274 NM_172815 ENSMUSG00000051920 Rspo2 2610028F08Rik|AA673245|D430027K22|ftls R-spondin 2 homolog (Xenopus laevis) 0.000000 0.458599 4.304803 chr7-460 chr7 71920342 71920498 + 25.4 NA Intergenic Intergenic 259688 NM_001024703 244049 Mm.217412 NM_001024703 ENSMUSG00000032776 Mctp2 Gm489 multiple C2 domains, transmembrane 2 0.000000 0.382166 -3.897560 chr8-500 chr8 47027863 47028019 + 25.4 NA intron (NM_172752, intron 1 of 25) intron (NM_172752, intron 1 of 25) 21330 NM_172752 234214 Mm.447653 NM_172752 ENSMUSG00000031626 Sorbs2 2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777 sorbin and SH3 domain containing 2 0.006410 0.445860 -3.257824 chr2-717 chr2 33706775 33706931 + 25.4 NA intron (NM_175184, intron 1 of 9) intron (NM_175184, intron 1 of 9) 3102 NM_175184 72543 Mm.254914 NM_175184 ENSMUSG00000038740 Fam125b 2610200O14Rik|2610528K11Rik|AI414895 family with sequence similarity 125, member B 0.006410 0.535032 -3.450498 chr11-857 chr11 100883281 100883437 + 25.4 NA Intergenic Intergenic -2824 NM_013792 27419 Mm.95452 NM_013792 ENSMUSG00000001751 Naglu - alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) 0.006410 0.522293 1.596371 chr3-580 chr3 104924636 104924792 + 25.4 NA intron (NM_001163441, intron 17 of 20) intron (NM_001163441, intron 17 of 20) 7625 NM_007484 11853 Mm.262 NM_007484 ENSMUSG00000002233 Rhoc AI324259|Arh9|Arhc ras homolog gene family, member C 0.006410 0.535032 -3.439675 chr14-259 chr14 58491548 58491704 + 25.4 NA intron (NM_026908, intron 9 of 10) intron (NM_026908, intron 9 of 10) 60443 NM_001168537 71891 Mm.439850 NM_001168535 ENSMUSG00000021982 Cdadc1 2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15 cytidine and dCMP deaminase domain containing 1 0.006410 0.426752 0.951934 chr6-565 chr6 88396967 88397123 + 25.4 NA intron (NM_023060, intron 1 of 6) intron (NM_023060, intron 1 of 6) 15135 NM_023060 65967 Mm.333237 NM_023060 ENSMUSG00000033216 Eefsec Selb|sec eukaryotic elongation factor, selenocysteine-tRNA-specific 0.025641 0.547771 7.733588 chr11-754 chr11 69259509 69259665 + 25.4 NA intron (NM_001081330, intron 63 of 85) intron (NM_001081330, intron 63 of 85) -29717 NM_001017426 216850 Mm.472522 NM_001017426 ENSMUSG00000018476 Kdm6b 1700064E03Rik|BC038313|Jmjd3|KIAA0346|mKIAA0346 KDM1 lysine (K)-specific demethylase 6B 0.006410 0.515924 -3.834951 chr12-750 chr12 118630347 118630503 + 25.4 NA intron (NM_010060, intron 6 of 81) intron (NM_010060, intron 6 of 81) 12720 NM_010060 13411 Mm.390540 NM_010060 ENSMUSG00000018581 Dnahc11 iv|lrd dynein, axonemal, heavy chain 11 0.006410 0.535032 -4.757704 chr7-411 chr7 25327914 25328070 + 25.4 NA promoter-TSS (NM_025504) promoter-TSS (NM_025504) -260 NM_025504 66349 Mm.159956 NM_025504 ENSMUSG00000057229 Atp5sl 2310004L02Rik|C030044E10Rik ATP5S-like 0.051282 0.445860 -4.207551 chr6-500 chr6 48522907 48523063 + 25.4 NA promoter-TSS (NM_001079905) promoter-TSS (NM_001079905) -483 NM_001079903 58887 Mm.219183 NM_001079901 ENSMUSG00000052751 Repin1 AI425994|AP4|E430037F08Rik|MGC19105|Zfp464 replication initiator 1 0.038462 0.579618 -5.884506 chr12-675 chr12 91493957 91494113 + 25.4 NA intron (NM_181815, intron 20 of 25) intron (NM_181815, intron 20 of 25) 295931 NM_181815 75216 Mm.312204 NM_181815 ENSMUSG00000061533 4930534B04Rik 5430424K18Rik|AI449708|AI480494|E230024F20 RIKEN cDNA 4930534B04 gene 0.000000 0.433121 -2.072309 chr6-537 chr6 70995009 70995165 + 25.4 NA Intergenic Intergenic 78868 NM_001033929 232078 Mm.37547 NM_001033929 ENSMUSG00000054474 Thnsl2 BC051244|MGC59076|TSH2 threonine synthase-like 2 (bacterial) 0.019231 0.477707 -0.742319 chr11-755 chr11 69395344 69395500 + 25.4 NA promoter-TSS (NM_144824) promoter-TSS (NM_144824) 97 NM_144824 216853 Mm.31586 NM_144824 ENSMUSG00000041346 Wrap53 BC021790|MGC28622|Wdr79 WD repeat containing, antisense to TP53 0.083333 0.605096 -2.770621 chr13-418 chr13 54082757 54082913 + 25.4 NA intron (NM_027324, intron 1 of 10) intron (NM_027324, intron 1 of 10) 1370 NM_027324 14057 Mm.134191 NM_027324 ENSMUSG00000021474 Sfxn1 2810002O05Rik|A930015P12Rik|f sideroflexin 1 0.000000 0.522293 -2.651960 chr10-507 chr10 77066021 77066177 + 25.4 NA promoter-TSS (NM_019803) promoter-TSS (NM_019803) 63 NM_019803 22213 Mm.458125 NM_019803 ENSMUSG00000009293 Ube2g2 1110003O05Rik|D10Xrf369|UBC7|Ubc7p ubiquitin-conjugating enzyme E2G 2 0.134615 0.694268 -9.927791 chr2-708 chr2 32420617 32420773 + 25.4 NA 3' UTR (NM_011373, exon 5 of 5) 3' UTR (NM_011373, exon 5 of 5) -1022 NM_001025311 50935 Mm.88831 NM_001025310 ENSMUSG00000026811 St6galnac6 Siat7f ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 0.025641 0.611465 -3.696761 chr1-882 chr1 58368517 58368673 + 25.4 NA promoter-TSS (NM_001042634) promoter-TSS (NM_001042634) 39 NR_027853 12747 Mm.1761 NM_001042634 ENSMUSG00000026034 Clk1 STY CDC-like kinase 1 0.108974 0.598726 -5.384298 chr15-437 chr15 99703438 99703594 + 25.4 NA promoter-TSS (NM_001113545) promoter-TSS (NM_001113545) -26 NM_001113545 65970 Mm.33207 NM_001113545 ENSMUSG00000023022 Lima1 1110021C24Rik|3526402A12Rik|D15Ertd366e|Eplin LIM domain and actin binding 1 0.153846 0.770701 -3.860792 chr18-335 chr18 49824968 49825124 + 25.4 NA intron (NM_026854, intron 5 of 5) intron (NM_026854, intron 5 of 5) 55885 NM_026854 68857 Mm.96010 NM_001170960 ENSMUSG00000024505 Dtwd2 1190002H09Rik|8030470C17Rik|AI414673|BB115449 DTW domain containing 2 0.057692 0.388535 -7.636454 chr2-891 chr2 165683715 165683871 + 25.4 NA promoter-TSS (NM_008679) promoter-TSS (NM_008679) -48 NM_008679 17979 Mm.476883 NM_008679 ENSMUSG00000027678 Ncoa3 2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip nuclear receptor coactivator 3 0.121795 0.764331 2.747082 chr2-675 chr2 24749912 24750068 + 25.4 NA intron (NM_001162485, intron 1 of 7) intron (NM_001162485, intron 1 of 7) 7300 NR_027876 215705 Mm.45275 NM_001162485 ENSMUSG00000026972 Arrdc1 AI957342|BC004091|MGC28029 arrestin domain containing 1 0.012821 0.579618 0.251322 chrX-86 chrX 33018791 33018947 + 25.4 NA Intergenic Intergenic -10800 NM_016783 53328 Mm.9052 NM_016783 ENSMUSG00000006373 Pgrmc1 AA415812|HPR6.6|PPMR|Vema progesterone receptor membrane component 1 0.006410 0.414013 -2.195897 chr10-443 chr10 13049730 13049886 + 25.4 NA Intergenic Intergenic -35450 NM_001033257 215789 Mm.338311 XM_001473029 ENSMUSG00000062866 Phactr2 AV158170|BC012871 phosphatase and actin regulator 2 0.000000 0.388535 1.040508 chr15-413 chr15 86059497 86059653 + 25.4 NA intron (NM_145476, intron 1 of 12) intron (NM_145476, intron 1 of 12) 17351 NM_145476 223754 Mm.28904 NM_145476 ENSMUSG00000051864 Tbc1d22a BC023106|D15Ertd781e|MGC28337 TBC1 domain family, member 22a 0.006410 0.471338 -3.272024 chr4-605 chr4 6278613 6278769 + 25.4 NA Intergenic Intergenic -14135 NM_016807 53378 Mm.479881 NM_001098227 ENSMUSG00000028249 Sdcbp MDA-9|Sycl|syntenin-1 syndecan binding protein 0.006410 0.471338 -3.811611 chr7-610 chr7 143899931 143900087 + 25.4 NA Intergenic Intergenic -84900 NM_001113373 210274 Mm.323725 NM_001081370 ENSMUSG00000037541 Shank2 KIAA1022|mKIAA1022 SH3/ankyrin domain gene 2 0.000000 0.445860 12.141450 chr1-1023 chr1 129032921 129033077 + 25.4 NA intron (NM_145128, intron 1 of 17) intron (NM_145128, intron 1 of 17) 468 NM_145128 107895 Mm.472488 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 0.070513 0.611465 0.155060 chr2-798 chr2 92969276 92969432 + 25.4 NA Intergenic Intergenic -19068 NM_001025246 277414 Mm.41033 NM_001025246 ENSMUSG00000068735 Trp53i11 Tp53i11 transformation related protein 53 inducible protein 11 0.000000 0.458599 -7.043741 chr1-832 chr1 32443249 32443405 + 25.4 NA intron (NM_133235, intron 6 of 8) intron (NM_133235, intron 6 of 8) 48512 NM_001164286 408191 Mm.479439 XM_887934 ENSMUSG00000067716 Gm5415 EG408191|Senp14 predicted gene 5415 0.006410 0.420382 -3.003338 chr7-561 chr7 126600262 126600418 + 25.4 NA Intergenic CpG -7692 NM_026884 68952 Mm.440393 XM_001480258 ENSMUSG00000058966 Fam57b 1500016O10Rik|A330104J06Rik|AI413816|AW060769|MGC103222 family with sequence similarity 57, member B 0.096154 0.636943 -6.992078 chr9-763 chr9 121449815 121449971 + 25.4 NA intron (NM_026915, intron 1 of 5) intron (NM_026915, intron 1 of 5) 40371 NM_026915 69032 Mm.33351 NM_026915 ENSMUSG00000032530 Lyzl4 1810009N24Rik|AI504271|Lyc4 lysozyme-like 4 0.006410 0.541401 -2.744268 chr5-841 chr5 80435264 80435420 + 25.4 NA Intergenic Intergenic -1660811 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.006410 0.382166 0.124138 chr1-1154 chr1 194853649 194853805 + 25.4 NA promoter-TSS (NM_016851) promoter-TSS (NM_016851) -108 NM_016851 54139 Mm.273695 NM_016851 ENSMUSG00000026638 Irf6 AI876454|E230028I05Rik|mirf6 interferon regulatory factor 6 0.083333 0.668790 -3.201262 chr8-575 chr8 123097226 123097382 + 25.4 NA Intergenic Intergenic -33858 NM_001033980 436062 Mm.334852 NM_001033980 ENSMUSG00000042269 Fam92b 1700120B06Rik family with sequence similarity 92, member B 0.019231 0.573248 -4.393186 chr9-682 chr9 75044792 75044948 + 25.4 NA intron (NM_001081322, intron 10 of 40) intron (NM_001081322, intron 10 of 40) 26948 NM_001081322 208943 Mm.41339 NM_001081322 ENSMUSG00000033590 Myo5c 9130003O20Rik|BB085560|C330029I24 myosin VC 0.012821 0.611465 -6.429034 chr16-291 chr16 5411287 5411443 + 25.4 NA Intergenic Intergenic -240088 NM_027446 70511 Mm.45780 NM_027446 ENSMUSG00000022544 Fam86 5730409G15Rik family with sequence similarity 86 0.000000 0.426752 0.206802 chr10-534 chr10 86364827 86364983 + 25.4 NA intron (NM_138673, intron 23 of 68) intron (NM_138673, intron 23 of 68) 72836 NM_138673 192188 Mm.279611 NM_138673 ENSMUSG00000035459 Stab2 FEEL-2|FELL|STAB-2 stabilin 2 0.012821 0.560510 -4.339328 chr11-882 chr11 108652202 108652358 + 25.4 NA intron (NM_145688, intron 4 of 6) intron (NM_145688, intron 4 of 6) -84158 NM_015732 12006 Mm.71710 NM_015732 ENSMUSG00000000142 Axin2 Axi1|Axil|Conductin axin2 0.000000 0.477707 7.094373 chr13-420 chr13 54775555 54775711 + 25.4 NA intron (NM_033610, intron 1 of 5) intron (NM_033610, intron 1 of 5) 429 NM_033610 104069 Mm.200843 NM_033610 ENSMUSG00000034891 Sncb AI838531|betaSYN synuclein, beta 0.070513 0.585987 0.924346 chr12-664 chr12 87373441 87373597 + 25.4 NA intron (NM_011934, intron 2 of 6) intron (NM_011934, intron 2 of 6) 62773 NM_011934 26380 Mm.235550 NM_001159500 ENSMUSG00000021255 Esrrb Err2|Errb|Estrrb|Nr3b2 estrogen related receptor, beta 0.006410 0.566879 -4.261071 chr2-652 chr2 4149321 4149477 + 25.4 NA intron (NM_172475, intron 1 of 22) intron (NM_172475, intron 1 of 22) 79265 NM_172475 209630 Mm.480116 NM_001177843 ENSMUSG00000026657 Frmd4a 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294 FERM domain containing 4A 0.019231 0.458599 -0.009296 chr16-339 chr16 33791784 33791940 + 25.4 NA intron (NM_001145884, intron 3 of 14) intron (NM_001145884, intron 3 of 14) 42451 NM_001145884 16419 Mm.6424 NM_001145884 ENSMUSG00000022817 Itgb5 AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5 integrin beta 5 0.032051 0.554140 -2.039449 chr2-731 chr2 52809976 52810132 + 25.4 NA intron (NM_172409, intron 1 of 26) intron (NM_172409, intron 1 of 26) 130178 NM_172409 71409 Mm.394427 NM_172409 ENSMUSG00000036053 Fmnl2 5430425K04Rik|Man formin-like 2 0.012821 0.515924 -2.445215 chr6-643 chr6 120937422 120937578 + 25.4 NA Intergenic Intergenic -55061 NM_007544 12122 Mm.235081 NM_007544 ENSMUSG00000004446 Bid 2700049M22Rik|AI875481|AU022477 BH3 interacting domain death agonist 0.012821 0.541401 -3.829224 chr1-1112 chr1 173130088 173130244 + 25.4 NA intron (NM_025388, intron 2 of 6) intron (NM_025388, intron 2 of 6) 1491 NM_025388 66155 Mm.2815 NM_025388 ENSMUSG00000062963 Ufc1 1110021H02Rik|AA062310|ESTM29 ubiquitin-fold modifier conjugating enzyme 1 0.006410 0.401274 -4.719967 chr9-562 chr9 21588231 21588387 + 25.4 NA TTS (NM_001080940) TTS (NM_001080940) 2398 NM_001080940 624219 Mm.440264 NM_001080940 ENSMUSG00000047822 Gm6484 EG624219 predicted gene 6484 0.006410 0.509554 -9.040430 chr5-908 chr5 112649847 112650003 + 25.4 NA Intergenic Intergenic -17409 NM_028386 72898 Mm.397047 NM_028386 ENSMUSG00000029348 Asphd2 2900006N09Rik|9230106G13Rik|MGC54823 aspartate beta-hydroxylase domain containing 2 0.000000 0.445860 0.293775 chr6-594 chr6 94931418 94931574 + 25.4 NA Intergenic Intergenic -151872 NM_001102670 243574 Mm.333275 NM_001008785 ENSMUSG00000030031 Kbtbd8 AU040152|MGC91215|SSEC-51|SSEC51|Takrp|mKIAA1842 kelch repeat and BTB (POZ) domain containing 8 0.012821 0.433121 4.998736 chr10-518 chr10 80568373 80568529 + 25.4 NA intron (NM_021501, intron 1 of 10) intron (NM_021501, intron 1 of 10) 2398 NM_021501 59004 Mm.34428 NM_021501 ENSMUSG00000004934 Pias4 PIASY|Pias-gamma|Piasg protein inhibitor of activated STAT 4 0.025641 0.573248 -6.604418 chr12-542 chr12 29100806 29100962 + 25.4 NA intron (NM_001177964, intron 8 of 8) intron (NM_001177964, intron 8 of 8) 33721 NM_001177964 68511 Mm.310284 XM_126879 ENSMUSG00000020633 1110015M06Rik - RIKEN cDNA 1110015M06 gene 0.006410 0.490446 -3.000633 chr1-1073 chr1 158937878 158938034 + 25.4 NA intron (NM_028540, intron 5 of 8) intron (NM_028540, intron 5 of 8) 7366 NM_028540 73435 Mm.116705 NM_028540 ENSMUSG00000026592 1700057K13Rik MGC118391|MGC144290 RIKEN cDNA 1700057K13 gene 0.025641 0.560510 2.903504 chr18-341 chr18 55267886 55268042 + 25.4 NA Intergenic Intergenic -152415 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.019231 0.547771 -4.682728 chr12-611 chr12 72891140 72891296 + 25.4 NA intron (NM_026102, intron 18 of 25) intron (NM_026102, intron 18 of 25) 98357 NM_181752 238252 Mm.390508 NM_181752 ENSMUSG00000043398 Gpr135 PAFR G protein-coupled receptor 135 0.044872 0.547771 -0.239484 chr7-588 chr7 139103477 139103633 + 25.4 NA intron (NM_001098636, intron 1 of 2) intron (NM_001098636, intron 1 of 2) 3754 NM_001098636 101631 Mm.334300 NM_001033206 ENSMUSG00000060260 Pwwp2b AI594893|D7Ertd517e|D930023J19Rik|Pwwp2 PWWP domain containing 2B 0.000000 0.592357 -0.936201 chr3-520 chr3 65713150 65713306 + 25.4 NA Intergenic Intergenic -40928 NM_001166659 624866 Mm.296317 NM_001037923 ENSMUSG00000074579 Lekr1 EG546798|EG624866|Gm6534 leucine, glutamate and lysine rich 1 0.019231 0.503185 -2.311781 chr14-276 chr14 75300421 75300577 + 25.4 NA Intergenic Intergenic -9455 NR_027699 72661 Mm.320384 XM_894566 ENSMUSG00000052584 Serp2 2810032E02Rik|MGC118314 stress-associated endoplasmic reticulum protein family member 2 0.012821 0.445860 1.499668 chr18-359 chr18 64569055 64569211 + 25.4 NA Intergenic Intergenic 45302 NM_007998 14151 Mm.1070 NM_007998 ENSMUSG00000024588 Fech AI894116|Fcl|fch ferrochelatase 0.019231 0.458599 -2.930144 chr9-602 chr9 46489755 46489911 + 25.4 NA Intergenic L2|LINE|L2 -174764 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.000000 0.541401 -3.725265 chr18-347 chr18 56884572 56884728 + 25.4 NA Intergenic Intergenic 51469 NM_010721 16906 Mm.4105 NM_010721 ENSMUSG00000024590 Lmnb1 - lamin B1 0.032051 0.522293 4.998735 chr11-783 chr11 78886043 78886199 + 25.4 NA intron (NM_013571, intron 2 of 17) intron (NM_013571, intron 2 of 17) 76428 NM_013571 16706 Mm.4745 NM_013571 ENSMUSG00000018334 Ksr1 AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb kinase suppressor of ras 1 0.038462 0.515924 -5.591366 chr1-892 chr1 61241481 61241637 + 25.4 NA Intergenic Intergenic 319100 NM_017480 54167 Mm.42044 NM_017480 ENSMUSG00000026009 Icos AILIM|H4|Ly115 inducible T-cell co-stimulator 0.006410 0.535032 -8.191492 chrX-100 chrX 96797713 96797869 + 25.4 NA promoter-TSS (NM_020621) promoter-TSS (NM_020621) -203 NM_020621 57385 Mm.117118 NM_020621 ENSMUSG00000044359 P2ry4 P2Y4|P2Y4R pyrimidinergic receptor P2Y, G-protein coupled, 4 0.006410 0.394904 -5.711398 chr11-792 chr11 81162479 81162635 + 25.4 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) -193459 NM_007384 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.019231 0.496815 4.748530 chr13-396 chr13 43220641 43220797 + 25.4 NA intron (NM_001033399, intron 1 of 1) intron (NM_001033399, intron 1 of 1) -38388 NM_025935 67046 Mm.269213 NM_025935 ENSMUSG00000021368 Tbc1d7 2610009C09Rik TBC1 domain family, member 7 0.019231 0.541401 -1.728499 chr16-358 chr16 66588868 66589024 + 25.4 NA intron (NM_001145977, intron 7 of 8) intron (NM_001145977, intron 7 of 8) 855054 NM_028572 73569 Mm.25670 XM_001480406 Vgll3 1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2 vestigial like 3 (Drosophila) 0.006410 0.350318 -3.117204 chr3-629 chr3 137967236 137967392 + 25.4 NA Intergenic RSINE1|SINE|B4 37461 NM_177860 329763 Mm.169710 NM_177860 ENSMUSG00000049349 Gm5105 D830013H12|EG329763 predicted gene 5105 0.006410 0.433121 -6.003899 chr18-297 chr18 17396060 17396216 + 25.4 NA Intergenic Intergenic -17638 NR_033607 664619 Mm.250005 NR_033607 4921533I20Rik - Riken cDNA 4921533I20 gene 0.006410 0.503185 8.188615 chr11-819 chr11 88789847 88790003 + 25.4 NA promoter-TSS (NM_016706) promoter-TSS (NM_016706) -99 NM_016706 12812 Mm.268004 NM_016706 ENSMUSG00000033983 Coil C79982|Cln80|MGC37472|p80-coilin coilin 0.083333 0.636943 -4.173034 chr13-477 chr13 100942152 100942308 + 25.4 NA Intergenic Intergenic 58704 NM_013732 27220 Mm.75498 NM_001081493 ENSMUSG00000021647 Cartpt Cart CART prepropeptide 0.000000 0.401274 -5.656050 chr18-372 chr18 79787485 79787641 + 25.4 NA Intergenic Intergenic -421390 NM_053117 93737 Mm.24678 NM_053117 ENSMUSG00000056214 Pard6g 2410049N21Rik|Par6a par-6 partitioning defective 6 homolog gamma (C. elegans) 0.012821 0.401274 -0.277935 chr5-821 chr5 65315908 65316064 + 25.4 NA intron (NM_026667, intron 12 of 13) intron (NM_026667, intron 12 of 13) 66534 NR_030577 100124451 NR_030577 Mir574 Mirn574|mmu-mir-574 microRNA 574 0.051282 0.528662 -7.559808 chr4-660 chr4 53561874 53562030 + 25.4 NA intron (NM_001159633, intron 7 of 12) intron (NM_001159633, intron 7 of 12) -90702 NM_176966 319636 Mm.148429 NM_176966 ENSMUSG00000054752 Fsd1l A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002 fibronectin type III and SPRY domain containing 1-like 0.000000 0.439490 -3.369867 chr9-588 chr9 39037874 39038030 + 25.4 NA TTS (NR_033620) TTS (NR_033620) 12100 NR_033620 257924 Mm.261800 NR_033620 Olfr947-ps1 MOR171-43 olfactory receptor 947, pseudogene 1 0.006410 0.426752 -2.975725 chr4-639 chr4 45233554 45233710 + 25.4 NA intron (NM_001081172, intron 1 of 15) intron (NM_001081172, intron 1 of 15) 27627 NM_001081172 666060 Mm.24783 NM_001081172 ENSMUSG00000035615 Frmpd1 BC031840|mKIAA0967 FERM and PDZ domain containing 1 0.019231 0.560510 -3.652937 chr11-695 chr11 32534204 32534360 + 25.4 NA Intergenic Intergenic -8592 NM_134015 103583 Mm.474118 NM_134015 ENSMUSG00000020271 Fbxw11 2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS|mKIAA0696 F-box and WD-40 domain protein 11 0.006410 0.471338 0.391936 chr12-655 chr12 86362923 86363079 + 25.4 NA promoter-TSS (NM_010234) promoter-TSS (NM_010234) -2 NM_010234 14281 Mm.246513 NM_010234 ENSMUSG00000021250 Fos D12Rfj1|c-fos|cFos FBJ osteosarcoma oncogene 0.089744 0.605096 -5.129536 chr4-672 chr4 61983191 61983347 + 25.4 NA intron (NM_138653, intron 6 of 6) intron (NM_138653, intron 6 of 6) 5292 NM_024257 72748 Mm.41506 NM_024257 ENSMUSG00000038422 Hdhd3 2810435D12Rik haloacid dehalogenase-like hydrolase domain containing 3 0.006410 0.490446 0.196071 chr4-838 chr4 142360806 142360962 + 25.4 NA Intergenic Intergenic 118512 NM_001081355 110593 Mm.477398 NM_001081355 ENSMUSG00000057637 Prdm2 4833427P12Rik|E330024L24Rik|Gm1033|KMT8|Riz|Riz1|Znfpr1c1 PR domain containing 2, with ZNF domain 0.000000 0.477707 2.259634 chr12-598 chr12 68042543 68042699 + 25.4 NA intron (NM_207010, intron 1 of 15) intron (NM_207010, intron 1 of 15) 98533 NM_207010 320772 Mm.481303 NM_001193266 ENSMUSG00000034912 Mdga2 6720489L24Rik|9330209L04Rik|Mamdc1 MAM domain containing glycosylphosphatidylinositol anchor 2 0.000000 0.382166 -2.495981 chr12-556 chr12 37370143 37370299 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -248590 NM_008584 17286 Mm.341398 NM_008584 ENSMUSG00000036144 Meox2 AI528662|Gax|Mox-2|Mox2 mesenchyme homeobox 2 0.006410 0.363057 -0.452408 chr12-520 chr12 5747876 5748032 + 25.4 NA Intergenic L1M5|LINE|L1 345445 NR_015579 72669 Mm.10434 NR_015579 2810032G03Rik AI461720 RIKEN cDNA 2810032G03 gene 0.000000 0.388535 -5.930390 chr18-352 chr18 60856028 60856184 + 25.4 NA Intergenic Intergenic -17348 NM_008306 15531 Mm.181862 NM_008306 ENSMUSG00000054008 Ndst1 1200015G06Rik|Hsst|NDST-1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 0.006410 0.509554 -3.257824 chr1-1143 chr1 188777435 188777591 + 25.4 NA intron (NM_028848, intron 9 of 9) intron (NM_028848, intron 9 of 9) 109310 NM_033077 110957 Mm.108054 NM_033077 ENSMUSG00000039224 D1Pas1 AU016353|Pl10 DNA segment, Chr 1, Pasteur Institute 1 0.012821 0.433121 -2.344666 chr13-407 chr13 48862774 48862930 + 25.4 NA intron (NM_011078, intron 1 of 21) intron (NM_011078, intron 1 of 21) 19970 NM_011078 18676 Mm.480579 NM_011078 ENSMUSG00000038025 Phf2 GRC5 PHD finger protein 2 0.019231 0.547771 -5.831399 chr17-438 chr17 26832433 26832589 + 25.4 NA intron (NM_080553, intron 28 of 57) intron (NM_080553, intron 28 of 57) 28969 NM_026063 67267 Mm.272389 NM_026063 ENSMUSG00000024208 2900010M23Rik - RIKEN cDNA 2900010M23 gene 0.012821 0.522293 -2.254771 chr6-572 chr6 90400842 90400998 + 25.4 NA Intergenic Intergenic -6936 NM_173775 243538 Mm.386876 XM_001479575 ENSMUSG00000048794 Ccdc37 AW048498|C030041G11Rik|C230069K22Rik coiled-coil domain containing 37 0.025641 0.471338 4.776027 chr9-635 chr9 58380353 58380509 + 25.4 NA promoter-TSS (NM_009145) promoter-TSS (NM_009145) 55 NM_009145 20320 Mm.15125 NM_009145 ENSMUSG00000032336 Nptn AW554172|Sdfr1 neuroplastin 0.147436 0.777070 -8.575757 chr6-612 chr6 101244454 101244610 + 25.4 NA intron (NM_018884, intron 3 of 9) intron (NM_018884, intron 3 of 9) 99463 NM_018884 55983 Mm.321654 NM_018884 ENSMUSG00000035357 Pdzrn3 1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3 PDZ domain containing RING finger 3 0.025641 0.528662 -5.980403 chr4-690 chr4 81871199 81871355 + 25.4 NA intron (NM_001113210, intron 2 of 11) intron (NM_001113210, intron 2 of 11) 105262 NM_001113210 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.000000 0.433121 -6.483958 chrX-125 chrX 148309384 148309540 + 25.4 NA Intergenic (GA)n|Simple_repeat|Simple_repeat -37722 NM_001137547 635253 Mm.426169 XM_001473738 ENSMUSG00000067215 Usp51 AV136873 ubiquitin specific protease 51 0.006410 0.407643 -2.144113 chr8-491 chr8 42192260 42192416 + 25.4 NA Intergenic Intergenic 18428 NM_010086 13526 Mm.67403 NM_010086 ENSMUSG00000046723 Adam24 Dtgn5 a disintegrin and metallopeptidase domain 24 (testase 1) 0.000000 0.503185 -1.377121 chr8-613 chr8 129400788 129400944 + 25.4 NA Intergenic Intergenic -39711 NM_001159907 212728 Mm.220928 NM_001159907 Tarbp1 Gm179 TAR (HIV-1) RNA binding protein 1 0.012821 0.522293 -1.301899 chr8-498 chr8 46760845 46761001 + 25.4 NA promoter-TSS (NM_028066) promoter-TSS (NM_028066) -75 NM_028066 109821 Mm.33326 NM_028066 ENSMUSG00000031645 F11 1600027G01Rik|AI503996|Cf11|FXI coagulation factor XI 0.019231 0.433121 1.725557 chr5-764 chr5 28633572 28633728 + 25.4 NA Intergenic Intergenic -14325 NM_028234 381626 Mm.304075 XM_355585 ENSMUSG00000048271 Rbm33 3200001K10Rik|6430512A10Rik|AA386890|Prr8 RNA binding motif protein 33 0.000000 0.439490 -5.061799 chr11-841 chr11 97851451 97851607 + 25.4 NA Intergenic MIR_Mars|SINE|MIR 8516 NM_009078 19921 Mm.30806 NM_001159483 ENSMUSG00000017404 Rpl19 - ribosomal protein L19 0.012821 0.503185 -3.701926 chr17-428 chr17 24198290 24198446 + 25.4 NA exon (NM_025954, exon 1 of 2) exon (NM_025954, exon 1 of 2) 296 NM_025954 67078 Mm.28541 NM_025954 ENSMUSG00000043445 Pgp 1700012G19Rik|AI481330|MGC103027 phosphoglycolate phosphatase 0.108974 0.649682 -3.789035 chr8-535 chr8 74393753 74393909 + 25.4 NA promoter-TSS (NM_053162) promoter-TSS (NM_053162) -83 NM_053162 94065 Mm.29489 NM_053162 ENSMUSG00000034880 Mrpl34 0610007O17Rik|D8Bwg1484e mitochondrial ribosomal protein L34 0.044872 0.560510 -3.595239 chr3-647 chr3 146467895 146468051 + 25.4 NA Intergenic Intergenic -9164 NM_027371 70285 Mm.28128 NM_027332 ENSMUSG00000028187 Rpf1 2210420E24Rik|2310066N05Rik|Bxdc5|MGC102255 ribosome production factor 1 homolog (S. cerevisiae) 0.012821 0.477707 -5.719227 chr4-780 chr4 124010662 124010818 + 25.4 NA Intergenic L2|LINE|L2 -149208 NM_011141 18991 Mm.388885 NM_011141 ENSMUSG00000078236 Pou3f1 Oct-6|Oct6|Otf6|Scip|Test1|Tst-1|Tst1 POU domain, class 3, transcription factor 1 0.019231 0.522293 -4.487056 chr14-281 chr14 85537411 85537567 + 25.4 NA intron (NM_019670, intron 27 of 27) intron (NM_019670, intron 27 of 27) 435372 NM_019670 56419 Mm.440585 NM_019670 ENSMUSG00000022021 Diap3 4930417P13Rik|Dia2|Diaph3|Drf3|KIAA4117|mDia2|mKIAA4117|p134MDia2 diaphanous homolog 3 (Drosophila) 0.006410 0.407643 1.360672 chr1-1108 chr1 171735224 171735380 + 25.4 NA Intergenic Intergenic -30311 NM_001033185 78465 Mm.470480 NM_001033185 ENSMUSG00000070532 1700084C01Rik - RIKEN cDNA 1700084C01 gene 0.006410 0.382166 1.080206 chr1-1028 chr1 130660739 130660895 + 25.4 NA Intergenic Intergenic -240972 NM_009911 12767 Mm.1401 XM_001478244 ENSMUSG00000045382 Cxcr4 CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r chemokine (C-X-C motif) receptor 4 0.019231 0.509554 -4.766119 chr3-549 chr3 89263582 89263738 + 25.4 NA TTS (NM_007712) TTS (NM_007712) 249 NM_011886 24045 Mm.257052 NM_011886 ENSMUSG00000028049 Scamp3 Sc3|TU52 secretory carrier membrane protein 3 0.038462 0.535032 -2.901263 chr18-350 chr18 57702922 57703078 + 25.4 NA intron (NM_029290, intron 3 of 6) intron (NM_029290, intron 3 of 6) -25234 NR_015494 75084 Mm.243841 XM_901621 4930511M06Rik - RIKEN cDNA 4930511M06 gene 0.000000 0.375796 -3.716518 chr8-580 chr8 123268409 123268565 + 25.4 NA Intergenic Intergenic -106355 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.038462 0.694268 -3.003338 chr7-555 chr7 122915101 122915257 + 25.4 NA 5' UTR (NM_144925, exon 1 of 24) 5' UTR (NM_144925, exon 1 of 24) 147 NM_144925 233833 Mm.102305 NM_144925 ENSMUSG00000052707 Tnrc6a 2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|MGC11932|Tnrc6 trinucleotide repeat containing 6a 0.083333 0.662420 -2.582977 chr4-667 chr4 59639273 59639429 + 25.4 NA intron (NM_178164, intron 1 of 13) intron (NM_178164, intron 1 of 13) 4067 NM_178164 230257 Mm.479541 NM_144904 ENSMUSG00000028382 Rod1 5830471K22Rik|AA407443|AI462022|AW107884|C86549|MGC11742 ROD1 regulator of differentiation 1 (S. pombe) 0.019231 0.484076 2.310561 chr7-469 chr7 78797481 78797637 + 25.4 NA Intergenic Intergenic 9812 NM_001113527 57444 Mm.322843 NM_001113527 ENSMUSG00000039236 Isg20 1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45 interferon-stimulated protein 0.025641 0.445860 3.723897 chr11-748 chr11 67888207 67888363 + 25.4 NA intron (NM_018768, intron 6 of 7) intron (NM_018768, intron 6 of 7) 105608 NM_018768 55943 Mm.3973 NM_018768 ENSMUSG00000020903 Stx8 0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB syntaxin 8 0.006410 0.426752 1.529187 chr14-299 chr14 120450849 120451005 + 25.4 NA intron (NM_145465, intron 2 of 10) intron (NM_145465, intron 2 of 10) 63483 NM_145465 223255 Mm.472866 NM_145465 ENSMUSG00000063410 Stk24 1810013H02Rik|C76483|MGC6330|Mst3 serine/threonine kinase 24 (STE20 homolog, yeast) 0.012821 0.509554 -3.650320 chr8-505 chr8 47830670 47830826 + 25.4 NA Intergenic Intergenic -37260 NM_173789 234219 Mm.145631 NM_173789 ENSMUSG00000047171 Helt A830086M02|Hesl|Mgn|megane Hey-like transcription factor (zebrafish) 0.019231 0.509554 1.187233 chr4-633 chr4 41929636 41929792 + 25.4 NA exon (NM_011014, exon 1 of 4) exon (NM_011014, exon 1 of 4) 110 NM_011014 18391 Mm.425181 NM_011014 ENSMUSG00000036078 Sigmar1 AL024364|Oprs1|mSigmaR1 sigma non-opioid intracellular receptor 1 0.064103 0.585987 -0.288369 chr12-564 chr12 40151542 40151698 + 25.4 NA Intergenic Intergenic 396179 NM_007487 11861 Mm.12723 NM_001039515 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A 0.012821 0.458599 -1.700911 chr12-685 chr12 100501693 100501849 + 25.4 NA Intergenic Intergenic -11609 NM_008947 19179 Mm.157105 NM_008947 ENSMUSG00000021178 Psmc1 AI325227|P26s4|S4 protease (prosome, macropain) 26S subunit, ATPase 1 0.012821 0.490446 -3.927742 chr16-297 chr16 8917260 8917416 + 25.4 NA Intergenic RLTR21|LTR|ERVK 171369 NM_001081400 69053 Mm.479940 XM_001480138 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|R74903 RIKEN cDNA 1810013L24 gene 0.000000 0.445860 1.094101 chr14-295 chr14 108315949 108316105 + 25.4 NA Intergenic Intergenic -518975 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 0.000000 0.382166 -0.133638 chr19-246 chr19 46190634 46190790 + 25.4 NA exon (NM_008852, exon 2 of 4) exon (NM_008852, exon 2 of 4) 5503 NM_007703 12686 Mm.21806 NM_007703 ENSMUSG00000038754 Elovl3 CIN-2|Cig30 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 0.057692 0.624204 -5.580289 chr2-880 chr2 163229900 163230056 + 25.4 NA intron (NR_027970, intron 1 of 3) intron (NR_027970, intron 1 of 3) 3184 NR_027970 68314 Mm.46190 NM_197983 0610008F07Rik - RIKEN cDNA 0610008F07 gene 0.000000 0.458599 -3.473837 chr10-576 chr10 117052999 117053155 + 25.4 NA intron (NM_027468, intron 2 of 8) intron (NM_027468, intron 2 of 8) 20586 NM_027468 70574 Mm.339332 XM_917914 ENSMUSG00000020183 Cpm 1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik|MGC118152 carboxypeptidase M 0.012821 0.375796 0.145303 chr8-538 chr8 74880023 74880179 + 25.4 NA promoter-TSS (NM_001164581) promoter-TSS (NM_001164581) 47 NM_001164581 234413 Mm.334607 XM_904244 ENSMUSG00000052446 BC049349 A230105L22Rik|BC065788|mszf37|mszf55-2 cDNA sequence BC049349 0.102564 0.662420 -7.629845 chr19-242 chr19 42738668 42738824 + 25.4 NA Intergenic Intergenic 67340 NM_029011 74580 Mm.329858 NM_029011 ENSMUSG00000060224 Pyroxd2 3830409H07Rik|4833409A17Rik pyridine nucleotide-disulphide oxidoreductase domain 2 0.000000 0.490446 1.373622 chr1-916 chr1 72516666 72516822 + 25.4 NA intron (NM_018817, intron 1 of 16) intron (NM_018817, intron 1 of 16) 287 NM_018817 54380 Mm.274232 NM_018817 ENSMUSG00000039354 Smarcal1 6030401P21Rik|Mharp SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 0.038462 0.598726 1.396131 chr6-517 chr6 53961562 53961718 + 25.4 NA Intergenic Intergenic -7869 NM_001163640 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.006410 0.337580 -2.490685 chr9-766 chr9 122043309 122043465 + 25.4 NA intron (NM_133979, intron 12 of 12) intron (NM_133979, intron 12 of 12) 77424 NM_133741 20623 Mm.441420 NM_001164572 ENSMUSG00000038145 Snrk 2010012F07Rik|AI448042|AW547029|E030034B15|MGC28970|R74830|mKIAA0096 SNF related kinase 0.019231 0.598726 -7.297467 chr16-344 chr16 36700868 36701024 + 25.4 NA exon (NM_021301, exon 3 of 22) exon (NM_021301, exon 3 of 22) 3255 NM_001145899 57738 Mm.281804 NM_001145899 ENSMUSG00000022899 Slc15a2 8430408C16Rik|C78862|Pept2 solute carrier family 15 (H+/peptide transporter), member 2 0.006410 0.414013 0.207767 chr18-362 chr18 65863519 65863675 + 25.4 NA intron (NM_177028, intron 9 of 14) intron (NM_177028, intron 9 of 14) 39961 NM_177028 319888 Mm.183576 NM_177028 ENSMUSG00000046610 5330437I02Rik Acyl3 RIKEN cDNA 5330437I02 gene 0.012821 0.477707 2.663250 chr9-653 chr9 63897164 63897320 + 25.4 NA Intergenic RSINE1|SINE|B4 -17910 NM_145835 235435 Mm.436581 NM_145835 ENSMUSG00000032401 Lctl E130104I05Rik|KLPH lactase-like 0.025641 0.458599 1.923392 chr10-526 chr10 82923017 82923173 + 25.4 NA intron (NM_153543, intron 21 of 22) intron (NM_153543, intron 21 of 22) 40844 NM_153543 216188 Mm.263138 NM_153543 ENSMUSG00000020256 Aldh1l2 D330038I09Rik|MGC19039 aldehyde dehydrogenase 1 family, member L2 0.025641 0.471338 0.888870 chr2-758 chr2 69447986 69448142 + 25.4 NA promoter-TSS (NM_028284) promoter-TSS (NM_028284) -29 NM_028284 72569 Mm.252136 NM_028284 ENSMUSG00000063145 Bbs5 1700049I01Rik|2700023J09Rik Bardet-Biedl syndrome 5 (human) 0.108974 0.649682 -4.594700 chr2-840 chr2 130653526 130653682 + 25.4 NA intron (NM_009730, intron 10 of 28) intron (NM_009730, intron 10 of 28) 55668 NM_009730 11990 Mm.119936 NM_009730 ENSMUSG00000027312 Atrn AW558010|Mgca|mKIAA0548|mahogany|mg attractin 0.000000 0.401274 -1.534616 chr11-775 chr11 76637700 76637856 + 25.4 NA intron (NM_007754, intron 2 of 20) intron (NM_007754, intron 2 of 20) 25425 NM_007754 12874 Mm.276736 NM_007754 ENSMUSG00000020841 Cpd AA960140|AW322530|D830034L15Rik carboxypeptidase D 0.012821 0.528662 1.545274 chr17-447 chr17 27979891 27980047 + 25.4 NA intron (NM_011145, intron 2 of 7) intron (NM_011145, intron 2 of 7) 19627 NM_011145 19015 Mm.328914 NM_011145 ENSMUSG00000002250 Ppard NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d peroxisome proliferator activator receptor delta 0.000000 0.515924 -4.231552 chr16-298 chr16 9481324 9481480 + 25.4 NA Intergenic Intergenic 424709 NM_008170 14811 Mm.2953 NM_008170 ENSMUSG00000059003 Grin2a NMDAR2A|NR2A glutamate receptor, ionotropic, NMDA2A (epsilon 1) 0.012821 0.445860 -5.050845 chr7-404 chr7 17216228 17216384 + 25.4 NA Intergenic Intergenic -8144 NM_001162524 67315 Mm.46089 NM_001162523 ENSMUSG00000030366 Ceacam12 1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3|MGC117634 carcinoembryonic antigen-related cell adhesion molecule 12 0.000000 0.382166 1.472080 chr11-808 chr11 87239958 87240114 + 25.4 NA intron (NM_031386, intron 1 of 30) intron (NM_031386, intron 1 of 30) 18777 NM_031386 83560 Mm.440758 NM_031386 ENSMUSG00000010342 Tex14 C85585 testis expressed gene 14 0.019231 0.515924 -5.681175 chr5-929 chr5 117575646 117575802 + 25.4 NA Intergenic Intergenic -4571 NM_001033311 231668 Mm.458123 NM_001033311 ENSMUSG00000066894 Vsig10 - V-set and immunoglobulin domain containing 10 0.006410 0.490446 4.971148 chr10-489 chr10 67977391 67977547 + 25.4 NA Intergenic Intergenic -40237 NM_028491 73287 Mm.141830 NM_028491 ENSMUSG00000019945 1700040L02Rik - RIKEN cDNA 1700040L02 gene 0.019231 0.407643 -3.534836 chr9-607 chr9 48232554 48232710 + 25.4 NA promoter-TSS (NM_024233) promoter-TSS (NM_024233) -54 NM_024233 104444 Mm.21911 NM_024233 ENSMUSG00000032026 Rexo2 1810038D15Rik|AW107347|Sfn|Smfn REX2, RNA exonuclease 2 homolog (S. cerevisiae) 0.108974 0.675159 0.675045 chr5-946 chr5 121325476 121325632 + 25.4 NA Intergenic Intergenic -55419 NM_011286 19894 Mm.181166 NM_011286 ENSMUSG00000029608 Rph3a 2900002P20Rik|AU022689|AW108370 rabphilin 3A 0.044872 0.407643 -1.067163 chr11-681 chr11 21471762 21471918 + 25.4 NA promoter-TSS (NM_145425) promoter-TSS (NM_145425) 97 NM_008618 17449 Mm.212703 NM_008618 ENSMUSG00000020321 Mdh1 B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2 malate dehydrogenase 1, NAD (soluble) 0.064103 0.624204 1.330188 chr7-524 chr7 112168779 112168935 + 25.4 NA Intergenic Intergenic -50029 NM_020606 57342 Mm.143763 NM_020606 ENSMUSG00000030770 Parva 2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin parvin, alpha 0.032051 0.484076 0.130474 chr10-470 chr10 55917323 55917479 + 25.4 NA promoter-TSS (NM_001033385) promoter-TSS (NM_001033385) -297 NM_001033385 544696 Mm.411188 NM_001033385 ENSMUSG00000038122 D630037F22Rik Bromi RIKEN cDNA D630037F22 gene 0.064103 0.605096 -5.944029 chr9-638 chr9 58814597 58814753 + 25.4 NA intron (NM_008684, intron 1 of 28) intron (NM_008684, intron 1 of 28) 19903 NM_008684 18007 Mm.461831 NM_001042752 ENSMUSG00000032340 Neo1 2610028H22Rik|AI327052|D930014N22Rik|Igdcc2 neogenin 0.012821 0.496815 -0.660600 chr16-330 chr16 30195365 30195521 + 25.4 NA intron (NM_028973, intron 1 of 1) intron (NM_028973, intron 1 of 1) 7558 NM_028973 74488 Mm.290677 NM_028973 ENSMUSG00000052316 Lrrc15 5430427N11Rik|LIB leucine rich repeat containing 15 0.012821 0.573248 -4.015349 chr9-593 chr9 43835977 43836133 + 25.4 NA 5' UTR (NM_198091, exon 1 of 12) 5' UTR (NM_198091, exon 1 of 12) 141 NM_198091 53376 Mm.272770 NM_016808 ENSMUSG00000032010 Usp2 B930035K21Rik|Ubp41 ubiquitin specific peptidase 2 0.115385 0.707006 0.764907 chr5-1040 chr5 151057605 151057761 + 25.4 NA intron (NM_175310, intron 25 of 34) intron (NM_175310, intron 25 of 34) 115478 NM_175310 100710 Mm.32959 NM_175310 ENSMUSG00000034021 Pds5b AI646570|AS3|AW212954|Aprin|mKIAA0979 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) 0.000000 0.439490 -3.151335 chr1-840 chr1 34977328 34977484 + 25.4 NA Intergenic Intergenic 182902 NM_145516 226971 Mm.292751 NM_145516 ENSMUSG00000026123 Plekhb2 2310009M15Rik|AU018239|Evt2|Phdc|evt-2 pleckstrin homology domain containing, family B (evectins) member 2 0.006410 0.471338 2.936821 chr13-458 chr13 96118737 96118893 + 25.4 NA intron (NM_172590, intron 10 of 12) intron (NM_172590, intron 10 of 12) 41769 NM_172590 218460 Mm.33856 NM_172590 ENSMUSG00000042015 Wdr41 B830029I03Rik|MSTP048 WD repeat domain 41 0.025641 0.522293 -5.008947 chr6-453 chr6 8459580 8459736 + 25.4 NA promoter-TSS (NM_133236) promoter-TSS (NM_133236) 63 NM_133236 170772 Mm.210787 NM_133236 ENSMUSG00000029638 Glcci1 2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1 glucocorticoid induced transcript 1 0.179487 0.796178 -6.197895 chr19-198 chr19 6281186 6281342 + 25.4 NA exon (NM_010119, exon 2 of 5) exon (NM_010119, exon 2 of 5) 4369 NM_010119 13660 Mm.471458 NM_010119 ENSMUSG00000024772 Ehd1 AA409636|Past1|RME-1 EH-domain containing 1 0.032051 0.579618 -3.811611 chr17-425 chr17 23880641 23880797 + 25.4 NA Intergenic Intergenic 10636 NM_172935 245847 Mm.87319 NM_172935 ENSMUSG00000036820 Amdhd2 5730457F11Rik amidohydrolase domain containing 2 0.006410 0.426752 -6.845107 chr10-559 chr10 95537667 95537823 + 25.4 NA Intergenic Intergenic 167395 NM_001001932 216238 Mm.476895 NM_001001932 ENSMUSG00000036499 Eea1 A430109M19Rik|B230358H09Rik|ZFYVE2 early endosome antigen 1 0.000000 0.420382 1.524701 chr7-445 chr7 55601903 55602059 + 25.4 NA Intergenic Intergenic -34215 NM_178706 233274 Mm.481804 NM_178706 ENSMUSG00000051504 Siglech 6430529G09Rik|MGC106898|Siglec-H sialic acid binding Ig-like lectin H 0.006410 0.484076 -5.546344 chr18-365 chr18 70466666 70466822 + 25.4 NA Intergenic Intergenic 131105 NM_172967 269033 Mm.87470 NM_172967 ENSMUSG00000044906 4930503L19Rik 9930107F24|BB148262|Lars|Las2 RIKEN cDNA 4930503L19 gene 0.032051 0.343949 -3.277060 chr13-427 chr13 57750301 57750457 + 25.4 NA intron (NM_001166464, intron 2 of 10) intron (NM_001166464, intron 2 of 10) 167576 NM_009262 20745 Mm.379020 NM_001166463 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 0.012821 0.464968 -4.809417 chr11-672 chr11 19820229 19820385 + 25.4 NA Intergenic CpG -4137 NM_033523 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 sprouty-related, EVH1 domain containing 2 0.134615 0.713376 4.141951 chr7-416 chr7 29127047 29127203 + 25.4 NA intron (NM_001081028, intron 3 of 22) intron (NM_001081028, intron 3 of 22) 87095 NM_001081028 74206 Mm.447042 NM_001081028 ENSMUSG00000030583 Sipa1l3 2610511M17Rik signal-induced proliferation-associated 1 like 3 0.006410 0.515924 0.256520 chr11-712 chr11 51494039 51494195 + 25.4 NA promoter-TSS (NR_027958) promoter-TSS (NR_027958) -259 NR_027958 97775 Mm.220299 NR_027958 D930048N14Rik AI315703|R75254 RIKEN cDNA D930048N14 gene 0.102564 0.668790 -7.326554 chr18-367 chr18 75964099 75964255 + 25.4 NA intron (NM_145356, intron 1 of 4) intron (NM_145356, intron 1 of 4) 18635 NM_145356 207259 Mm.440160 NM_145356 ENSMUSG00000044646 Zbtb7c B230208J24Rik|Zbtb36 zinc finger and BTB domain containing 7C 0.006410 0.592357 -5.308380 chr1-880 chr1 54501740 54501896 + 25.4 NA intron (NM_001163314, intron 1 of 26) intron (NM_001163314, intron 1 of 26) 409 NM_001163314 241062 Mm.253601 XM_892623 ENSMUSG00000070889 Pgap1 5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto post-GPI attachment to proteins 1 0.064103 0.643312 3.576192 chr2-700 chr2 30239661 30239817 + 25.4 NA intron (NM_138748, intron 1 of 9) intron (NM_138748, intron 1 of 9) 1681 NM_138748 110854 Mm.275393 NM_138748 ENSMUSG00000039515 Ppp2r4 2610042B21Rik|C77440|MGC60706|MGC7129|N28142|PR53 protein phosphatase 2A, regulatory subunit B (PR 53) 0.025641 0.509554 -3.966637 chr12-703 chr12 106568049 106568205 + 25.4 NA Intergenic Intergenic 156815 NM_001029843 22367 Mm.2981 NM_001029843 ENSMUSG00000021115 Vrk1 51PK vaccinia related kinase 1 0.012821 0.509554 -4.846887 chr8-476 chr8 27399933 27400089 + 25.4 NA exon (NM_008432, exon 26 of 27) exon (NM_008432, exon 26 of 27) 42278 NM_029884 52120 Mm.28326 NM_029884 ENSMUSG00000037260 Hgsnat 9430010M12Rik|AW208455|D8Ertd354e|Tmem76 heparan-alpha-glucosaminide N-acetyltransferase 0.025641 0.452229 -5.447060 chr8-593 chr8 125704027 125704183 + 25.4 NA TTS (NM_144932) TTS (NM_144932) -23562 NM_001100618 100043225 Mm.390074 XM_001001934 ENSMUSG00000074046 Gm16378 EG434356 predicted gene 16378 0.012821 0.554140 -5.178026 chr1-915 chr1 72332966 72333122 + 25.4 NA Intergenic Intergenic 92416 NM_009533 22596 Mm.246952 NM_009533 ENSMUSG00000026187 Xrcc5 AI314015|Ku80|Ku86 X-ray repair complementing defective repair in Chinese hamster cells 5 0.000000 0.452229 4.998736 chr2-651 chr2 3881767 3881923 + 25.4 NA Intergenic Intergenic -188289 NM_172475 209630 Mm.480116 NM_001177843 ENSMUSG00000026657 Frmd4a 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294 FERM domain containing 4A 0.006410 0.401274 -3.180853 chr4-713 chr4 88765881 88766037 + 25.4 NA promoter-TSS (NM_009877) promoter-TSS (NM_009877) -109 NM_009877 12578 Mm.4733 NM_001040654 ENSMUSG00000044303 Cdkn2a ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19|p19ARF cyclin-dependent kinase inhibitor 2A 0.147436 0.789809 -3.317520 chr15-371 chr15 61816695 61816742 + 25.4 NA intron (NM_001177354, intron 1 of 2) intron (NM_001177354, intron 1 of 2) 1712 NM_001177353 17869 Mm.2444 NM_001177352 ENSMUSG00000022346 Myc AU016757|Myc2|Niard|Nird|bHLHe39 myelocytomatosis oncogene 0.212766 0.750000 -10.944201 chr13-483 chr13 102858430 102858586 + 25.4 NA intron (NM_001077495, intron 1 of 15) intron (NM_001077495, intron 1 of 15) 9966 NM_001077495 18708 Mm.259333 NM_001024955 ENSMUSG00000041417 Pik3r1 AA414921|C530050K14|PI3K|p50alpha|p55alpha|p85alpha phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) 0.019231 0.452229 -0.622854 chr2-759 chr2 69686426 69686582 + 25.4 NA promoter-TSS (NM_029280) promoter-TSS (NM_029280) -61 NM_029280 75422 Mm.268657 XM_001475732 ENSMUSG00000051730 Mettl5 2810410A08Rik methyltransferase like 5 0.115385 0.675159 1.333365 chr6-473 chr6 29632412 29632568 + 25.4 NA Intergenic (CAGAA)n|Simple_repeat|Simple_repeat -11775 NM_146173 232670 Mm.225289 NM_146173 ENSMUSG00000001763 Tspan33 1300010A20Rik|AI035228|MGC30714|Pen tetraspanin 33 0.006410 0.426752 0.860453 chr11-814 chr11 88003880 88004036 + 25.4 NA intron (NM_001172099, intron 6 of 9) intron (NM_001172099, intron 6 of 9) -16654 NM_024174 64656 Mm.168680 NM_024174 ENSMUSG00000023723 Mrps23 2310047I09Rik|D11Bwg1153e|Rpms23 mitochondrial ribosomal protein S23 0.044872 0.624204 -4.263611 chr2-707 chr2 32414860 32415016 + 25.4 NA intron (NM_011373, intron 2 of 4) intron (NM_011373, intron 2 of 4) 5440 NM_011373 20448 Mm.27446 NM_011373 ENSMUSG00000079442 St6galnac4 MGC102103|Siat7d ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 0.025641 0.477707 0.996904 chr9-767 chr9 122307209 122307365 + 25.4 NA Intergenic Intergenic 106974 NM_026179 67469 Mm.280254 NM_026179 ENSMUSG00000032540 Abhd5 1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2 abhydrolase domain containing 5 0.000000 0.426752 -0.398508 chr19-220 chr19 25238694 25238850 + 25.4 NA intron (NM_028785, intron 35 of 47) intron (NM_028785, intron 35 of 47) -65526 NM_181404 107351 Mm.260722 NM_181404 ENSMUSG00000032702 Kank1 A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|MGC90826|mKIAA0172 KN motif and ankyrin repeat domains 1 0.038462 0.471338 -5.809155 chr14-212 chr14 19717920 19718076 + 25.4 NA promoter-TSS (NM_009502) promoter-TSS (NM_009502) 14 NM_009502 22330 Mm.279361 NM_009502 ENSMUSG00000021823 Vcl 9430097D22|AA571387|AI462105|AW545629 vinculin 0.141026 0.713376 -8.078673 chr17-493 chr17 43075702 43075858 + 25.4 NA TTS (NM_013737) TTS (NM_013737) 17574 NM_001161366 210510 Mm.329058 NM_001161366 ENSMUSG00000040140 Tdrd6 AB097085|Tdr2 tudor domain containing 6 0.025641 0.420382 -2.108181 chr9-764 chr9 121809171 121809327 + 25.4 NA intron (NM_177743, intron 1 of 4) intron (NM_177743, intron 1 of 4) 7818 NM_177743 245050 Mm.71062 NM_177743 ENSMUSG00000038233 Fam198a C730027P07Rik|MGC130602 family with sequence similarity 198, member A 0.006410 0.515924 -3.755270 chr9-714 chr9 96781435 96781591 + 25.4 NA intron (NM_145134, intron 2 of 2) intron (NM_145134, intron 2 of 2) 46194 NM_145134 211949 Mm.479991 NM_145134 ENSMUSG00000046997 Spsb4 D030068E18Rik|SSB-4|Ssb4 splA/ryanodine receptor domain and SOCS box containing 4 0.025641 0.541401 -6.802830 chr6-624 chr6 114747562 114747718 + 25.4 NA intron (NM_028835, intron 18 of 18) intron (NM_028835, intron 18 of 18) 138897 NM_028835 74244 Mm.275332 NM_028835 ENSMUSG00000030314 Atg7 1810013K23Rik|Agp7|Apg7l|Atg7l autophagy-related 7 (yeast) 0.012821 0.433121 4.993439 chr12-527 chr12 16558790 16558946 + 25.4 NA Intergenic Intergenic 56382 NM_015763 14245 Mm.153625 NM_001130412 ENSMUSG00000020593 Lpin1 4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188 lipin 1 0.012821 0.541401 1.461646 chr4-762 chr4 114192958 114193114 + 25.4 NA Intergenic B4A|SINE|B4 -126615 NR_033617 433746 Mm.388908 NR_033617 Gm12830 OTTMUSG00000008584 predicted gene 12830 0.019231 0.484076 -1.248983 chr7-516 chr7 110990105 110990261 + 25.4 NA Intergenic Intergenic -76327 NR_015573 75479 Mm.460324 NR_015573 1700012D14Rik - RIKEN cDNA 1700012D14 gene 0.012821 0.369427 -4.002104 chr10-531 chr10 86135604 86135760 + 25.4 NA promoter-TSS (NM_011631) promoter-TSS (NM_011631) 73 NM_001003939 103220 Mm.440762 NM_001003910 ENSMUSG00000044937 BC030307 AI449705|AU041509|Gnn|MGC40847|Nt5dc3 cDNA sequence BC030307 0.108974 0.535032 6.733207 chr2-906 chr2 171296383 171296539 + 25.4 NA Intergenic Intergenic 438210 NM_175631 228942 Mm.40555 NM_175631 ENSMUSG00000067578 Cbln4 AI848962 cerebellin 4 precursor protein 0.012821 0.503185 -4.395902 chr19-207 chr19 10644418 10644574 + 25.4 NA promoter-TSS (NM_201351) promoter-TSS (NM_201351) -271 NM_201351 225912 Mm.252701 NM_201351 ENSMUSG00000034445 Cybasc3 2310004G04Rik|BC065078|Lcytb|MGC86114 cytochrome b, ascorbate dependent 3 0.044872 0.579618 1.934122 chr8-554 chr8 97061808 97061964 + 25.4 NA 5' UTR (NM_008630, exon 1 of 3) 5' UTR (NM_008630, exon 1 of 3) 140 NM_008630 17750 Mm.147226 NM_008630 ENSMUSG00000031762 Mt2 AA409533|MT-II|Mt-2 metallothionein 2 0.121795 0.617834 -5.614427 chr1-1134 chr1 185967433 185967589 + 25.4 NA Intergenic Intergenic 231795 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5 dual specificity phosphatase 10 0.019231 0.547771 -5.631526 chr14-303 chr14 121993784 121993940 + 25.4 NA intron (NM_144844, intron 21 of 23) intron (NM_144844, intron 21 of 23) 54483 NM_145466 223267 Mm.379358 NM_145466 ENSMUSG00000041625 A2ld1 GGACT|MGC7867 AIG2-like domain 1 0.006410 0.426752 -0.897998 chr11-669 chr11 17853778 17853934 + 25.4 NA promoter-TSS (NM_026576) promoter-TSS (NM_026576) 22 NM_026576 68145 Mm.178684 NM_026576 ENSMUSG00000016984 Etaa1 5730466H23Rik|AA672646 Ewing's tumor-associated antigen 1 0.089744 0.598726 -6.430132 chr4-703 chr4 85796662 85796818 + 25.4 NA intron (NM_029967, intron 15 of 27) intron (NM_029967, intron 15 of 27) 232794 NM_001081096 75811 Mm.56451 NM_001081096 ENSMUSG00000028492 Fam154a 4930500O09Rik family with sequence similarity 154, member A 0.006410 0.414013 3.092384 chr6-664 chr6 145610921 145611077 + 25.4 NA Intergenic B4A|SINE|B4 37878 NM_009449 22147 Mm.270295 NM_009449 ENSMUSG00000067338 Tuba3b M[a]7|Tuba3a|Tuba7 tubulin, alpha 3B 0.025641 0.611465 -2.629466 chr6-670 chr6 148471252 148471408 + 25.4 NA Intergenic Intergenic -69808 NM_198967 387314 Mm.137858 NM_198967 ENSMUSG00000030306 Tmtc1 Arg99|BC023818 transmembrane and tetratricopeptide repeat containing 1 0.006410 0.509554 4.894820 chr19-225 chr19 28103289 28103445 + 25.4 NA Intergenic Intergenic -26204 NM_011265 19726 Mm.313321 NM_001166414 ENSMUSG00000040929 Rfx3 C230093O12Rik|MRFX3 regulatory factor X, 3 (influences HLA class II expression) 0.032051 0.388535 -6.437222 chr5-931 chr5 117622405 117622561 + 25.4 NA intron (NM_021539, intron 1 of 8) intron (NM_021539, intron 1 of 8) 4149 NM_021539 59043 Mm.28489 NM_021539 ENSMUSG00000029364 Wsb2 AA673511|Swip2|WSB-2 WD repeat and SOCS box-containing 2 0.006410 0.458599 5.236700 chr7-511 chr7 110079574 110079730 + 25.4 NA Intergenic Intergenic 66773 NM_009302 20947 Mm.334144 NM_009302 ENSMUSG00000031015 Swap70 70kDa|AV235546 SWA-70 protein 0.019231 0.592357 0.806597 chr5-855 chr5 91841053 91841209 + 25.4 NA Intergenic Intergenic -2586 NM_023785 57349 Mm.293614 NM_023785 ENSMUSG00000029372 Ppbp 2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG pro-platelet basic protein 0.032051 0.490446 -2.490685 chr2-693 chr2 28524075 28524231 + 25.4 NA intron (NM_001033874, intron 1 of 12) intron (NM_001033874, intron 1 of 12) 1984 NM_001033874 68870 Mm.273318 NM_001033874 ENSMUSG00000026807 1190002A17Rik MGC118311|MGC130365 RIKEN cDNA 1190002A17 gene 0.006410 0.515924 -4.536775 chr9-673 chr9 70639624 70639780 + 25.4 NA intron (NM_008280, intron 1 of 8) intron (NM_008280, intron 1 of 8) 94323 NM_008280 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl lipase, hepatic 0.012821 0.439490 -6.957224 chr1-1036 chr1 133959792 133959948 + 25.4 NA intron (NM_008795, intron 1 of 15) intron (NM_008795, intron 1 of 15) 7361 NM_008795 18557 Mm.28130 NM_008795 ENSMUSG00000026437 Cdk18 AA682070|Ctk18|Pctk3 cyclin-dependent kinase 18 0.032051 0.477707 -5.419787 chr13-371 chr13 29379490 29379646 + 25.4 NA intron (NM_144536, intron 13 of 15) intron (NM_144536, intron 13 of 15) -418421 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.006410 0.528662 -8.981309 chr10-490 chr10 68810325 68810481 + 25.4 NA Intergenic Intergenic -62134 NM_007659 12534 Mm.281367 NM_007659 ENSMUSG00000019942 Cdk1 Cdc2|Cdc2a|p34 cyclin-dependent kinase 1 0.025641 0.407643 -2.317078 chr17-554 chr17 84174781 84174937 + 25.4 NA intron (NM_183021, intron 30 of 37) intron (NM_183021, intron 30 of 37) -78586 NM_001001806 12193 Mm.259321 NM_001001806 ENSMUSG00000045817 Zfp36l2 Brf2|ERF2|Tis11d zinc finger protein 36, C3H type-like 2 0.000000 0.509554 6.981600 chr8-552 chr8 94863428 94863584 + 25.4 NA Intergenic Intergenic -173004 NM_008393 16373 Mm.238044 NM_008393 ENSMUSG00000031734 Irx3 AI894186 Iroquois related homeobox 3 (Drosophila) 0.038462 0.464968 -1.124524 chr4-654 chr4 47641895 47642051 + 25.4 NA Intergenic Intergenic 146213 NM_024171 66212 Mm.20188 NM_024171 ENSMUSG00000053317 Sec61b 1190006C12Rik|AI326121|AW122942|MGC102034 Sec61 beta subunit 0.012821 0.573248 -4.334495 chr17-547 chr17 80052284 80052440 + 25.4 NA intron (NM_176963, intron 2 of 6) intron (NM_176963, intron 2 of 6) 16566 NM_176963 319625 Mm.29098 NM_176963 ENSMUSG00000035473 Galm A530057M15Rik|AU015645|AU020959 galactose mutarotase 0.000000 0.458599 -3.043262 chr17-530 chr17 62415720 62415876 + 25.4 NA intron (NM_207654, intron 1 of 4) intron (NM_207654, intron 1 of 4) 150981 NM_207654 13640 Mm.401670 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 0.006410 0.503185 -5.091317 chr17-552 chr17 83743340 83743496 + 25.4 NA intron (NM_025325, intron 6 of 9) intron (NM_025325, intron 6 of 9) 11698 NM_025325 107766 Mm.30100 NM_025325 ENSMUSG00000000673 Haao 0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO 3-hydroxyanthranilate 3,4-dioxygenase 0.019231 0.528662 -0.903033 chr1-857 chr1 39423098 39423254 + 25.4 NA 5' UTR (NM_018775, exon 1 of 20) 5' UTR (NM_018775, exon 1 of 20) 117 NM_018775 54610 Mm.387293 NM_018775 ENSMUSG00000003134 Tbc1d8 AD3|HBLP1|VRP TBC1 domain family, member 8 0.153846 0.764331 -4.397045 chr16-395 chr16 94319588 94319744 + 25.4 NA intron (NM_139145, intron 5 of 9) intron (NM_139145, intron 5 of 9) 76988 NM_139145 110948 Mm.30921 NM_139145 ENSMUSG00000040820 Hlcs 410I21.SP6|D16Jhu34 holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) 0.012821 0.528662 -3.333990 chr7-537 chr7 115743973 115744129 + 25.4 NA intron (NM_001025559, intron 1 of 15) intron (NM_001025559, intron 1 of 15) 42184 NM_011445 20679 Mm.323365 NM_001025559 ENSMUSG00000051910 Sox6 AI987981 SRY-box containing gene 6 0.006410 0.388535 -5.228571 chr2-736 chr2 57333663 57333819 + 25.4 NA Intergenic Intergenic 279974 NM_010274 14571 Mm.3711 NM_001145820 ENSMUSG00000026827 Gpd2 AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38 glycerol phosphate dehydrogenase 2, mitochondrial 0.000000 0.356688 -4.769458 chr1-1083 chr1 160826263 160826419 + 25.4 NA Intergenic L2|LINE|L2 -32226 NM_001085376 23850 Mm.458621 XM_001472777 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe pappalysin 2 0.006410 0.394904 -3.424413 chrX-115 chrX 134620203 134620359 + 25.4 NA Intergenic Intergenic 56752 NM_001164632 245631 Mm.131001 NM_001164630 ENSMUSG00000042515 Mum1l1 9430086K21Rik melanoma associated antigen (mutated) 1-like 1 0.000000 0.369427 -4.229281 chr17-470 chr17 32218972 32219128 + 25.4 NA exon (NM_177307, exon 8 of 14) exon (NM_177307, exon 8 of 14) -23065 NM_001101445 208285 Mm.311422 NM_001101445 Cyp4f17 EG208285 cytochrome P450, family 4, subfamily f, polypeptide 17 0.064103 0.624204 -3.795892 chr11-692 chr11 30493266 30493422 + 25.4 NA intron (NM_029344, intron 3 of 3) intron (NM_029344, intron 3 of 3) 56052 NM_029344 75572 Mm.390319 NM_029344 ENSMUSG00000060923 Acyp2 2310004B09Rik acylphosphatase 2, muscle type 0.006410 0.388535 0.097941 chr1-1126 chr1 183312855 183313011 + 25.4 NA Intergenic Intergenic 35193 NM_207280 403180 Mm.220754 XM_619714 ENSMUSG00000050625 Ccdc121 6530421E24Rik|Gm755 coiled-coil domain containing 121 0.025641 0.464968 -4.515931 chr12-748 chr12 118273681 118273837 + 25.4 NA Intergenic Intergenic -12110 NM_146040 217946 Mm.281149 NM_146040 ENSMUSG00000021175 Cdca7l BC006933|JPO2|MGC11998 cell division cycle associated 7 like 0.019231 0.439490 -4.134492 chr13-432 chr13 60017280 60017436 + 25.4 NA Intergenic Intergenic 169800 NM_008086 14451 Mm.22701 NM_008086 ENSMUSG00000052957 Gas1 AW554192|Gas-1 growth arrest specific 1 0.019231 0.496815 -2.904835 chr6-600 chr6 97766175 97766331 + 25.4 NA Intergenic Intergenic -6267 NM_001113198 17342 Mm.454504 NM_001113198 ENSMUSG00000035158 Mitf Bhlhe32|MGC124309|MGC124310|Vitiligo|Wh|bw|mi|vit microphthalmia-associated transcription factor 0.006410 0.445860 4.752529 chr9-641 chr9 59489731 59489887 + 25.4 NA Intergenic Intergenic -15960 NM_001033498 546134 Mm.297580 NM_001033498 ENSMUSG00000074259 Gramd2 BC064463 GRAM domain containing 2 0.051282 0.668790 -4.268959 chr5-1027 chr5 146596927 146597083 + 25.4 NA intron (NM_153599, intron 7 of 12) intron (NM_153599, intron 7 of 12) 61097 NM_153599 264064 Mm.260576 NM_153599 ENSMUSG00000029635 Cdk8 MGC37111 cyclin-dependent kinase 8 0.000000 0.407643 2.866062 chr7-449 chr7 63796740 63796896 + 25.4 NA intron (NM_021366, intron 1 of 1) intron (NM_021366, intron 1 of 1) 21047 NM_021366 50794 Mm.240473 NM_021366 ENSMUSG00000052040 Klf13 0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 0.025641 0.522293 -0.395048 chr4-723 chr4 96615991 96616147 + 25.4 NA Intergenic Intergenic -338891 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 OTTMUSG00000008003 predicted gene 12695 0.006410 0.401274 -3.622732 chr17-407 chr17 11476487 11476643 + 25.4 NA intron (NM_016694, intron 6 of 11) intron (NM_016694, intron 6 of 11) -486076 NM_026644 68262 Mm.258300 NM_026644 ENSMUSG00000023827 Agpat4 1500003P24Rik 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 0.006410 0.394904 -1.466927 chr11-913 chr11 117661895 117662051 + 25.4 NA Intergenic Intergenic -3353 NM_009689 11799 Mm.8552 NM_001012273 ENSMUSG00000017716 Birc5 AAC-11|Api4|TIAP|survivin40 baculoviral IAP repeat-containing 5 0.006410 0.464968 -2.591213 chr5-878 chr5 101157799 101157955 + 25.4 NA Intergenic Intergenic 71347 NM_172715 231510 Mm.271911 NM_172715 ENSMUSG00000029314 Agpat9 4933407I02Rik|4933408F15|A230097K15Rik 1-acylglycerol-3-phosphate O-acyltransferase 9 0.044872 0.573248 -3.579683 chrX-108 chrX 110495770 110495926 + 25.4 NA Intergenic RMER6D|LTR|ERVK -95615 NM_172781 237010 Mm.132583 NM_172781 ENSMUSG00000025597 Klhl4 B130014A11|C130018J01Rik|MGC107454 kelch-like 4 (Drosophila) 0.000000 0.426752 -5.353367 chr8-602 chr8 126888763 126888919 + 25.4 NA intron (NM_133966, intron 4 of 4) intron (NM_133966, intron 4 of 4) 18558 NM_133966 102162 Mm.291777 NM_133966 ENSMUSG00000038697 Taf5l 1110005N04Rik|AI849020 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor 0.012821 0.484076 -4.205942 chr4-794 chr4 129004924 129005080 + 25.4 NA Intergenic Intergenic -10882 NM_010807 17357 Mm.424974 NM_010807 ENSMUSG00000047945 Marcksl1 AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp MARCKS-like 1 0.012821 0.471338 0.462786 chr15-412 chr15 85860714 85860870 + 25.4 NA exon (NM_009886, exon 1 of 35) exon (NM_009886, exon 1 of 35) 751 NM_009886 12614 Mm.22680 NM_009886 ENSMUSG00000016028 Celsr1 Crsh|Scy|crash cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) 0.089744 0.675159 -3.374737 chr14-287 chr14 98398779 98398935 + 25.4 NA Intergenic Intergenic 217033 NM_009769 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF Kruppel-like factor 5 0.000000 0.464968 -0.275805 chr19-236 chr19 37327581 37327737 + 25.4 NA Intergenic Intergenic 54971 NM_001164337 69104 Mm.175989 NM_001164336 ENSMUSG00000023307 March5 1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MGC130121|MGC130122|Marchv|Rnf153 membrane-associated ring finger (C3HC4) 5 0.012821 0.420382 2.119205 chr19-227 chr19 29012901 29013057 + 25.4 NA intron (NM_198651, intron 5 of 12) intron (NM_198651, intron 5 of 12) -16937 NM_028922 74411 Mm.441887 NM_028922 ENSMUSG00000040105 Ppapdc2 4932443D16Rik phosphatidic acid phosphatase type 2 domain containing 2 0.019231 0.579618 4.908093 chr1-933 chr1 75119532 75119688 + 25.4 NA promoter-TSS (NM_020266) promoter-TSS (NM_020266) 40 NM_001159883 56812 Mm.480347 NM_001159883 ENSMUSG00000026203 Dnajb2 2700059H22Rik|Dnajb10|Hsj1|MGC113758|mDj8 DnaJ (Hsp40) homolog, subfamily B, member 2 0.115385 0.738854 -3.328559 chr7-562 chr7 126767158 126767314 + 25.4 NA promoter-TSS (NM_026638) promoter-TSS (NM_026638) -260 NM_026638 52858 Mm.28219 NM_026638 ENSMUSG00000030682 Cdipt 9530042F15Rik|D7Bwg0575e|Pis|Pis1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) 0.083333 0.656051 -5.986937 chr6-618 chr6 113415917 113416073 + 25.4 NA Intergenic Intergenic 7584 NM_026365 67767 Mm.2053 NM_026365 ENSMUSG00000051256 Jagn1 5830427H10Rik|AW146438 jagunal homolog 1 (Drosophila) 0.000000 0.407643 0.222274 chr2-777 chr2 76475907 76476063 + 25.4 NA promoter-TSS (NM_031256) promoter-TSS (NM_031256) -168 NM_031256 83435 Mm.470359 NM_031256 ENSMUSG00000002733 Plekha3 FAPP1 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 0.141026 0.777070 -3.819231 chr5-986 chr5 136486572 136486728 + 25.4 NA Intergenic Intergenic -3069 NM_025774 66801 Mm.425295 NM_025774 ENSMUSG00000039737 Prkrip1 8430424D23Rik|C114 Prkr interacting protein 1 (IL11 inducible) 0.006410 0.535032 1.212038 chr17-402 chr17 9929726 9929882 + 25.4 NA Intergenic Intergenic 232914 NM_021881 19317 Mm.393248 NM_001159516 ENSMUSG00000062078 Qk 1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1 quaking 0.006410 0.407643 -5.929477 chr4-857 chr4 150016050 150016206 + 25.4 NA intron (NM_001166021, intron 5 of 22) intron (NM_001166021, intron 5 of 22) -114375 NM_009498 22319 Mm.273930 NM_009498 ENSMUSG00000028955 Vamp3 D130027G05Rik|VAMP-3|ceb vesicle-associated membrane protein 3 0.000000 0.484076 4.832441 chr10-528 chr10 84398772 84398928 + 25.4 NA intron (NM_001013441, intron 4 of 8) intron (NM_001013441, intron 4 of 8) 51396 NM_001013441 237422 Mm.18936 NM_001013441 ENSMUSG00000035620 Ric8b BC051080|MGC58970|Ric-8|Ric-8b resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 0.012821 0.445860 -0.010261 chr13-357 chr13 9063612 9063768 + 25.4 NA Intergenic Intergenic -29460 NM_172585 217980 Mm.479947 NM_172585 ENSMUSG00000033499 Larp4b A630096F19|AI256361|D13Wsu64e|Larp5|MGC78318 La ribonucleoprotein domain family, member 4B 0.000000 0.496815 -2.335121 chr7-463 chr7 74297547 74297703 + 25.4 NA intron (NM_023908, intron 2 of 9) intron (NM_023908, intron 2 of 9) 130668 NM_023908 108116 Mm.425467 NM_001038643 ENSMUSG00000025790 Slco3a1 5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11 solute carrier organic anion transporter family, member 3a1 0.012821 0.477707 -0.270443 chr4-684 chr4 80393425 80393581 + 25.4 NA intron (NM_026821, intron 1 of 1) intron (NM_026821, intron 1 of 1) 11587 NM_026821 52829 Mm.273986 NM_026821 ENSMUSG00000048706 D4Bwg0951e 1110029A09Rik|AV077978|AV175137|WI-13707|bM350F23.1 DNA segment, Chr 4, Brigham & Women's Genetics 0951 expressed 0.006410 0.407643 -3.723377 chr6-544 chr6 72583092 72583248 + 25.4 NA intron (NM_009332, intron 3 of 11) intron (NM_009332, intron 3 of 11) -36661 NM_009443 22134 Mm.246563 XM_001471628 ENSMUSG00000056429 Tgoln1 AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1 trans-golgi network protein 0.012821 0.515924 -6.851276 chr1-1046 chr1 137587967 137588123 + 25.4 NA Intergenic Intergenic 5550 NM_013750 27280 Mm.34346 NM_013750 ENSMUSG00000041801 Phlda3 Tih1 pleckstrin homology-like domain, family A, member 3 0.012821 0.515924 3.015078 chr14-202 chr14 10955296 10955452 + 25.4 NA intron (NM_008981, intron 12 of 29) intron (NM_008981, intron 12 of 29) -122101 NM_178141 218734 Mm.44068 NM_146051 ENSMUSG00000033111 3830406C13Rik 3110059I09Rik|AV167947|MGC36213 RIKEN cDNA 3830406C13 gene 0.006410 0.414013 -1.687772 chr7-495 chr7 98258632 98258788 + 25.4 NA Intergenic Intergenic -22190 NM_001168539 244152 Mm.25317 NM_001024619 ENSMUSG00000049580 Tsku 9530051K01Rik|E2ig4|Lrrc54|Tsk tsukushin 0.006410 0.503185 -2.368006 chr4-753 chr4 107860530 107860686 + 25.4 NA Intergenic Intergenic 20673 NM_001099303 545667 Mm.380025 XM_620088 ENSMUSG00000059816 Fam159a OTTMUSG00000008243 family with sequence similarity 159, member A 0.032051 0.528662 -5.161807 chr5-970 chr5 130456244 130456400 + 25.4 NA Intergenic CpG -15560 NM_019983 56715 Mm.288639 NM_019983 ENSMUSG00000025340 Rabgef1 Rab5ef|Rabex5|Rin2 RAB guanine nucleotide exchange factor (GEF) 1 0.070513 0.630573 2.508848 chr1-908 chr1 66569782 66569938 + 25.4 NA intron (NM_175510, intron 37 of 64) intron (NM_175510, intron 37 of 64) -64240 NM_025683 66646 Mm.240912 NM_025683 ENSMUSG00000026005 Rpe 2810429B02Rik|5730518J08Rik ribulose-5-phosphate-3-epimerase 0.000000 0.350318 -7.635931 chr15-384 chr15 72601823 72601979 + 25.4 NA intron (NM_029640, intron 16 of 21) intron (NM_029640, intron 16 of 21) 35679 NR_002864 353342 Mm.440245 NR_002864 Peg13 - paternally expressed 13 0.006410 0.509554 3.231090 chr11-907 chr11 115330354 115330510 + 25.4 NA promoter-TSS (NM_008258) promoter-TSS (NM_008258) 28 NM_008258 15374 Mm.1775 NM_008258 ENSMUSG00000020737 Hn1 - hematological and neurological expressed sequence 1 0.070513 0.630573 -6.006410 chr6-497 chr6 47913645 47913801 + 25.4 NA Intergenic Intergenic 30748 NM_178898 101197 Mm.241063 NM_178898 ENSMUSG00000045466 AI894139 - expressed sequence AI894139 0.000000 0.554140 -2.599948 chr12-537 chr12 25673681 25673837 + 25.4 NA Intergenic Intergenic 11413 NM_010496 15902 Mm.476766 NM_010496 ENSMUSG00000020644 Id2 AI255428|C78922|Idb2|bHLHb26 inhibitor of DNA binding 2 0.012821 0.439490 -2.400657 chr1-1006 chr1 120230649 120230805 + 25.4 NA intron (NM_177548, intron 1 of 36) intron (NM_177548, intron 1 of 36) 14124 NM_029709 76707 Mm.138740 NM_001081276 ENSMUSG00000064302 Clasp1 1700030C23Rik|5730583A19Rik|B130045P17Rik|KIAA0622|mKIAA0622 CLIP associating protein 1 0.019231 0.471338 -2.105194 chr2-658 chr2 6259145 6259301 + 25.4 NA intron (NM_001080548, intron 2 of 14) intron (NM_001080548, intron 2 of 14) -10784 NM_181399 98910 Mm.40673 NM_001080548 ENSMUSG00000039046 Usp6nl AI316785|RNTRE|TRE2NL|mKIAA0019 USP6 N-terminal like 0.006410 0.528662 0.447030 chr6-636 chr6 115771348 115771504 + 25.4 NA TTS (NM_025958) TTS (NM_025958) 2296 NR_028546 100217451 Mm.104368 NR_028546 Snora7a MBI-141 small nucleolar RNA, H/ACA box 7A 0.012821 0.458599 3.997947 chr17-416 chr17 14773893 14774049 + 25.4 NA Intergenic Intergenic 15950 NM_001034891 381062 Mm.458576 NM_001034891 ENSMUSG00000036552 2210404J11Rik 2410011O22Rik|AI448938 RIKEN cDNA 2210404J11 gene 0.006410 0.522293 -4.311584 chr9-756 chr9 120211473 120211629 + 25.4 NA intron (NM_144557, intron 2 of 16) intron (NM_144557, intron 2 of 16) 58781 NM_144557 245049 Mm.100936 NM_144557 ENSMUSG00000041794 Myrip A230081N12Rik|Slac2-c|Slac2c myosin VIIA and Rab interacting protein 0.012821 0.503185 -2.501329 chr1-863 chr1 39823924 39824080 + 25.4 NA Intergenic (CAGAA)n|Simple_repeat|Simple_repeat -21456 NM_008696 26921 Mm.19073 NM_008696 ENSMUSG00000026074 Map4k4 9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik mitogen-activated protein kinase kinase kinase kinase 4 0.006410 0.477707 5.266219 chr3-587 chr3 108637233 108637389 + 25.4 NA intron (NM_001033304, intron 1 of 20) intron (NM_001033304, intron 1 of 20) 27267 NM_001033304 229722 Mm.316890 NM_001033304 ENSMUSG00000040412 5330417C22Rik BB183350|KIAA1324|mKIAA1324 RIKEN cDNA 5330417C22 gene 0.000000 0.515924 2.671268 chr16-386 chr16 92854625 92854781 + 25.4 NA Intergenic Intergenic -140097 NM_001111022 12394 Mm.470227 NM_001111021 ENSMUSG00000022952 Runx1 AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b runt related transcription factor 1 0.019231 0.363057 -6.033998 chr12-604 chr12 71442195 71442351 + 25.4 NA Intergenic Intergenic 70515 NM_028339 72736 Mm.479585 NM_028339 ENSMUSG00000021072 Tmx1 2810425A04Rik|AI465319|Txndc1 thioredoxin-related transmembrane protein 1 0.012821 0.490446 -5.725527 chr17-537 chr17 64953632 64953788 + 25.4 NA Intergenic B3|SINE|B2 455771 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.000000 0.369427 -0.848580 chr12-539 chr12 25819494 25819650 + 25.4 NA Intergenic Intergenic -134400 NM_010496 15902 Mm.476766 NM_010496 ENSMUSG00000020644 Id2 AI255428|C78922|Idb2|bHLHb26 inhibitor of DNA binding 2 0.006410 0.445860 7.432962 chr5-848 chr5 84942882 84943038 + 25.4 NA Intergenic Intergenic -513204 NM_153801 243078 Mm.126783 NM_153801 ENSMUSG00000049537 Tecrl D330017N19Rik|MGC130344|MGC130345|Srd5a2l2 trans-2,3-enoyl-CoA reductase-like 0.006410 0.305732 -1.534803 chr12-606 chr12 72408836 72408992 + 25.4 NA Intergenic LTR40a|LTR|ERVL 180426 NM_001190466 59036 Mm.46662 NM_001190466 ENSMUSG00000044548 Dact1 4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3 dapper homolog 1, antagonist of beta-catenin (xenopus) 0.006410 0.458599 4.971148 chrX-126 chrX 155307373 155307529 + 25.4 NA intron (NM_021389, intron 14 of 16) intron (NM_021389, intron 14 of 16) -25086 NM_001163085 270672 Mm.386889 XM_984997 Map3k15 BC031147|MEKK15 mitogen-activated protein kinase kinase kinase 15 0.000000 0.363057 -4.677977 chr9-729 chr9 108656984 108657140 + 25.4 NA intron (NM_029634, intron 4 of 5) intron (NM_029634, intron 4 of 5) 3846 NM_029634 76500 Mm.276336 NM_029634 ENSMUSG00000032599 Ip6k2 1500005N04Rik|AW050208|Ihpk2|MGC107719 inositol hexaphosphate kinase 2 0.000000 0.401274 -1.145067 chr11-926 chr11 121159875 121160031 + 25.4 NA intron (NM_025793, intron 2 of 9) intron (NM_025793, intron 2 of 9) 10584 NM_025793 66840 Mm.103986 NM_025793 ENSMUSG00000025173 Wdr45l 0610008N23Rik|AA408735|D16Bwg0193e Wdr45 like 0.012821 0.490446 -1.906015 chr7-426 chr7 33866825 33866981 + 25.4 NA intron (NM_016682, intron 6 of 16) intron (NM_016682, intron 6 of 16) 10386 NM_016682 50995 Mm.27560 NM_016682 ENSMUSG00000052997 Uba2 AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b ubiquitin-like modifier activating enzyme 2 0.006410 0.414013 -0.497082 chr8-561 chr8 108526291 108526447 + 25.4 NA intron (NM_181322, intron 1 of 11) intron (NM_181322, intron 1 of 11) 703 NM_181322 13018 Mm.269474 NM_007794 ENSMUSG00000005698 Ctcf AW108038 CCCTC-binding factor 0.089744 0.668790 -2.311675 chr9-723 chr9 104911238 104911394 + 25.4 NA promoter-TSS (NM_053159) promoter-TSS (NM_053159) -51 NM_053159 94062 Mm.29746 NM_053159 ENSMUSG00000032563 Mrpl3 2010320L16Rik|5930422H18Rik|AA407889 mitochondrial ribosomal protein L3 0.057692 0.528662 -3.068825 chr6-611 chr6 101240563 101240719 + 25.4 NA intron (NM_018884, intron 3 of 9) intron (NM_018884, intron 3 of 9) 103354 NM_018884 55983 Mm.321654 NM_018884 ENSMUSG00000035357 Pdzrn3 1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3 PDZ domain containing RING finger 3 0.000000 0.414013 -5.146064 chr7-590 chr7 139601421 139601577 + 25.4 NA Intergenic Intergenic -83994 NM_177469 52389 Mm.39863 NM_177469 ENSMUSG00000025475 Gpr123 2900059M17Rik|D7Ertd680e G protein-coupled receptor 123 0.006410 0.503185 -2.018381 chr15-387 chr15 72998152 72998308 + 25.4 NA intron (NM_153178, intron 1 of 18) intron (NM_153178, intron 1 of 18) 13973 NM_153178 239528 Mm.274482 NM_153178 ENSMUSG00000036698 Eif2c2 Ago2|ENSMUSG00000072493|Gerp95|Gm10365|KIAA4215|mKIAA4215 eukaryotic translation initiation factor 2C, 2 0.025641 0.394904 3.325009 chr9-622 chr9 54498243 54498399 + 25.4 NA intron (NM_021422, intron 1 of 6) intron (NM_021422, intron 1 of 6) 626 NM_021422 58233 Mm.28437 NM_021422 ENSMUSG00000032285 Dnaja4 1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4 DnaJ (Hsp40) homolog, subfamily A, member 4 0.038462 0.579618 -1.785127 chr12-738 chr12 113372132 113372288 + 25.4 NA intron (NM_010588, intron 2 of 25) intron (NM_010588, intron 2 of 25) 5093 NM_010588 16450 Mm.186146 NM_010588 ENSMUSG00000002799 Jag2 D12Ggc2e|Serh|mJagged2-1|sm jagged 2 0.064103 0.707006 -2.205743 chr2-667 chr2 17945383 17945539 + 25.4 NA 5' UTR (NR_028378, exon 1 of 1) 5' UTR (NR_028378, exon 1 of 1) 459 NR_028378 100034739 Mm.401643 NR_028378 LOC100034739 - hypothetical LOC100034739 0.064103 0.636943 -5.466787 chr11-905 chr11 115112395 115112551 + 25.4 NA intron (NM_178035, intron 2 of 5) intron (NM_178035, intron 2 of 5) 1163 NM_178035 328035 Mm.21995 NM_178035 ENSMUSG00000044788 Fads6 BC044804|OTTMUSG00000021749 fatty acid desaturase domain family, member 6 0.044872 0.528662 -5.942686 chr15-321 chr15 27146124 27146280 + 25.4 NA Intergenic Intergenic -265199 NM_020332 11732 Mm.265264 NM_020332 ENSMUSG00000022265 Ank Ankh|D15Ertd221e|ank|mKIAA1581 progressive ankylosis 0.019231 0.560510 -1.186813 chr13-459 chr13 96476136 96476292 + 25.4 NA promoter-TSS (NM_025630) promoter-TSS (NM_025630) -181 NM_025630 66549 Mm.36785 NM_025630 ENSMUSG00000021681 Aggf1 2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q angiogenic factor with G patch and FHA domains 1 0.032051 0.445860 -0.353308 chr15-404 chr15 82749983 82750139 + 25.4 NA Intergenic Intergenic -10161 NM_013836 21411 Mm.252156 NM_001114140 ENSMUSG00000041852 Tcf20 2810438H08Rik|SPBP|mKIAA0292 transcription factor 20 0.012821 0.668790 -4.651858 chr17-455 chr17 28960391 28960547 + 25.4 NA intron (NM_153166, intron 1 of 20) intron (NM_153166, intron 1 of 20) 4333 NM_153166 240058 Mm.39905 NM_153166 ENSMUSG00000024008 Cpne5 A830083G22Rik|MGC47475 copine V 0.019231 0.509554 -2.556284 chr8-449 chr8 12089057 12089213 + 25.4 NA Intergenic Intergenic 248643 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.019231 0.490446 3.007190 chr5-812 chr5 64103208 64103364 + 25.4 NA intron (NM_029554, intron 1 of 3) intron (NM_029554, intron 1 of 3) 11657 NM_029554 76261 Mm.38143 NM_029554 ENSMUSG00000060512 0610040J01Rik AI662686 RIKEN cDNA 0610040J01 gene 0.012821 0.541401 -3.896258 chr11-786 chr11 80141072 80141228 + 25.4 NA intron (NM_139228, intron 4 of 8) intron (NM_139228, intron 4 of 8) 24044 NM_139228 246104 Mm.194148 NM_139228 ENSMUSG00000017692 Rhbdl3 AI847581|Rhbdl4|Rhomr1|Vrho rhomboid, veinlet-like 3 (Drosophila) 0.025641 0.490446 -4.105345 chr12-667 chr12 87773679 87773835 + 25.4 NA 5' UTR (NM_145836, exon 1 of 1) 5' UTR (NM_145836, exon 1 of 1) 160 NM_145836 238330 Mm.248358 NM_145836 ENSMUSG00000034168 6430527G18Rik Eap1 RIKEN cDNA 6430527G18 gene 0.108974 0.726115 -9.766976 chr3-481 chr3 23600716 23600872 + 25.4 NA Intergenic Intergenic 1158781 NR_004439 19784 NR_004439 Rprl2 RPRH2|RPRH3|Rmrp3 ribonuclease P RNA-like 2 0.000000 0.420382 -1.564041 chr17-391 chr17 5578836 5578992 + 25.4 NA intron (NM_146073, intron 1 of 8) intron (NM_146073, intron 1 of 8) 129833 NM_146073 224454 Mm.478308 NM_146073 ENSMUSG00000034265 Zdhhc14 B530001K09Rik|MGC29194|New1cp zinc finger, DHHC domain containing 14 0.019231 0.439490 -5.113585 chr9-583 chr9 31617576 31617732 + 25.4 NA intron (NM_013800, intron 1 of 3) intron (NM_013800, intron 1 of 3) 45196 NM_013800 12023 Mm.261044 NM_013800 ENSMUSG00000032033 Barx2 2310006E12Rik|Barx2b BarH-like homeobox 2 0.000000 0.394904 -4.703070 chr3-503 chr3 51117833 51117989 + 25.4 NA Intergenic Intergenic -194464 NM_009834 12457 Mm.86541 NM_009834 ENSMUSG00000023087 Ccrn4l AU043840|Ccr4|nocturnin CCR4 carbon catabolite repression 4-like (S. cerevisiae) 0.006410 0.490446 -5.553494 chr15-377 chr15 66779421 66779577 + 25.4 NA intron (NM_008681, intron 3 of 15) intron (NM_008681, intron 3 of 15) 19811 NM_008681 17988 Mm.30837 NM_008681 ENSMUSG00000005125 Ndrg1 CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5 N-myc downstream regulated gene 1 0.000000 0.471338 -7.718961 chr4-776 chr4 120369031 120369187 + 25.4 NA Intergenic Intergenic -6394 NM_182929 242662 Mm.479706 NM_182929 ENSMUSG00000032890 Rims3 A730060M23Rik|Nim3|Rim3|mKIAA0237 regulating synaptic membrane exocytosis 3 0.038462 0.535032 -1.816253 chr17-476 chr17 33797529 33797685 + 25.4 NA promoter-TSS (NM_013585) promoter-TSS (NM_013585) 11 NM_013585 16912 Mm.390983 NM_013585 ENSMUSG00000024337 Psmb9 Lmp-2|Lmp2 proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) 0.102564 0.668790 -5.535910 chrX-101 chrX 97471768 97471924 + 25.4 NA promoter-TSS (NM_013563) promoter-TSS (NM_013563) -921 NM_013563 16186 Mm.2923 NM_013563 ENSMUSG00000031304 Il2rg CD132|[g]c|gamma(c)|gc interleukin 2 receptor, gamma chain 0.006410 0.375796 -6.414561 chr5-793 chr5 39328909 39329065 + 25.4 NA Intergenic Intergenic -164045 NM_013748 27278 Mm.440845 NM_013748 ENSMUSG00000039315 Clnk MGC159342|MIST cytokine-dependent hematopoietic cell linker 0.000000 0.420382 0.249862 chr2-931 chr2 180639412 180639568 + 25.4 NA promoter-TSS (NM_177852) promoter-TSS (NM_177852) -83 NM_177852 23856 Mm.481681 NM_011805 ENSMUSG00000038914 Dido1 6720461J16Rik|C530043I07|D130048F08Rik|DIO-1|Datf1|Dido2|Dido3|mKIAA0333 death inducer-obliterator 1 0.108974 0.585987 -11.256157 chr1-944 chr1 78451732 78451888 + 25.4 NA Intergenic Intergenic 57604 NM_026713 68393 Mm.41325 NM_026713 ENSMUSG00000012187 Mogat1 0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|MGC118035|mDC2 monoacylglycerol O-acyltransferase 1 0.012821 0.471338 -4.829747 chr6-549 chr6 81923011 81923167 + 25.4 NA TTS (NM_026490) TTS (NM_026490) 8518 NM_026490 56284 Mm.276293 NM_026490 ENSMUSG00000030045 Mrpl19 9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15 mitochondrial ribosomal protein L19 0.006410 0.375796 -1.590160 chr6-460 chr6 21844489 21844645 + 25.4 NA Intergenic Intergenic -42051 NM_173007 269831 Mm.21950 NM_173007 ENSMUSG00000029669 Tspan12 9030619E17|AI426782|AI663988|AW111457|Tm4sf12 tetraspanin 12 0.025641 0.509554 2.524183 chr6-448 chr6 7973595 7973751 + 25.4 NA intron (NM_001037865, intron 27 of 34) intron (NM_001037865, intron 27 of 34) 168944 NM_001037865 213945 Mm.297404 NM_001037865 ENSMUSG00000068794 Col28a1 Col28|Gm466 collagen, type XXVIII, alpha 1 0.000000 0.477707 4.865302 chr11-688 chr11 26389924 26390080 + 25.4 NA intron (NM_027260, intron 8 of 12) intron (NM_027260, intron 8 of 12) 102919 NM_025923 67030 Mm.18875 NM_025923 ENSMUSG00000004018 Fancl 2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd Fanconi anemia, complementation group L 0.025641 0.490446 -1.124524 chr15-350 chr15 38872119 38872275 + 25.4 NA Intergenic Intergenic -34808 NM_026778 68588 Mm.41556 NM_026778 ENSMUSG00000054196 Cthrc1 1110014B07Rik collagen triple helix repeat containing 1 0.006410 0.496815 -5.977909 chr6-631 chr6 115258468 115258624 + 25.4 NA Intergenic Intergenic -41078 NM_080639 110595 Mm.255607 NM_080639 ENSMUSG00000030317 Timp4 TIMP-4 tissue inhibitor of metalloproteinase 4 0.019231 0.515924 0.591972 chr9-743 chr9 116656350 116656506 + 25.4 NA intron (NM_001172121, intron 6 of 14) intron (NM_001172121, intron 6 of 14) 444753 NM_001172123 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.019231 0.484076 -6.626013 chr13-447 chr13 71152634 71152790 + 25.4 NA Intergenic Intergenic -47706 NM_144837 218333 Mm.139738 XM_358313 BC018507 C77245|MGC27742|mKIAA0947 cDNA sequence BC018507 0.006410 0.535032 -3.741996 chr11-894 chr11 112598242 112598398 + 25.4 NA promoter-TSS (NM_011448) promoter-TSS (NM_011448) 21 NM_011448 20682 Mm.481669 NM_011448 ENSMUSG00000000567 Sox9 2010306G03Rik|AV220920|KIAA4243|mKIAA4243 SRY-box containing gene 9 0.051282 0.515924 -4.342667 chr4-757 chr4 108587892 108588048 + 25.4 NA intron (NM_133885, intron 8 of 22) intron (NM_133885, intron 8 of 22) 27998 NM_173350 100273 Mm.366315 NM_001134791 ENSMUSG00000028559 Osbpl9 2600011I06Rik|AU015843|MGC30367|MGC38458|Orp-9 oxysterol binding protein-like 9 0.006410 0.350318 -2.900217 chr1-1062 chr1 154664649 154664805 + 25.4 NA exon (NM_001160256, exon 1 of 23) exon (NM_001160256, exon 1 of 23) 137 NM_001160256 226517 Mm.270775 NM_001005507 ENSMUSG00000042772 Smg7 9430023P16Rik|MGC91209|mKIAA0250 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) 0.134615 0.738854 -3.095416 chr6-523 chr6 54857616 54857772 + 25.4 NA exon (NM_172729, exon 11 of 12) exon (NM_172729, exon 11 of 12) 43545 NM_001171007 107607 Mm.28498 NM_001171007 ENSMUSG00000038058 Nod1 C230079P11|Card4|F830007N14Rik|Nlrc1 nucleotide-binding oligomerization domain containing 1 0.025641 0.566879 -1.502491 chr8-430 chr8 9303874 9304030 + 25.4 NA intron (NM_173446, intron 1 of 2) intron (NM_173446, intron 1 of 2) 467043 NM_173446 270028 Mm.268163 NM_173446 ENSMUSG00000079157 Fam155a 6430500D16|AW121567|Tmem28 family with sequence similarity 155, member A 0.019231 0.464968 6.615549 chr18-381 chr18 82540786 82540942 + 25.4 NA 5' UTR (NM_008082, exon 1 of 3) 5' UTR (NM_008082, exon 1 of 3) 341 NM_008082 14427 Mm.6219 NM_008082 ENSMUSG00000024553 Galr1 Galnr1 galanin receptor 1 0.064103 0.630573 -0.220575 chr10-583 chr10 122881516 122881672 + 25.4 NA intron (NM_182807, intron 2 of 5) intron (NM_182807, intron 2 of 5) 214459 NM_182807 268354 Mm.51939 NM_182807 ENSMUSG00000044071 Fam19a2 6330575M02|AI851790|FAM19A2 TAFA-2|TAFA2|Tafa-2 family with sequence similarity 19, member A2 0.019231 0.547771 -2.038001 chr1-849 chr1 37259460 37259616 + 25.4 NA intron (NM_030266, intron 1 of 25) intron (NM_030266, intron 1 of 25) 15100 NM_030266 269180 Mm.5294 NM_030266 ENSMUSG00000026113 Inpp4a 107kDa|9630012D15|D130048C09Rik|R74740 inositol polyphosphate-4-phosphatase, type I 0.006410 0.426752 -2.613581 chr7-504 chr7 107457790 107457946 + 25.4 NA intron (NM_001163557, intron 3 of 25) intron (NM_001163557, intron 3 of 25) 59848 NM_001163557 19024 Mm.2817 NM_001163557 ENSMUSG00000036528 Ppfibp2 Cclp1|MGC117695 PTPRF interacting protein, binding protein 2 (liprin beta 2) 0.006410 0.515924 5.817278 chr12-694 chr12 103500052 103500208 + 25.4 NA intron (NM_001081017, intron 23 of 46) intron (NM_001081017, intron 23 of 46) 97192 NM_001081017 217843 Mm.387073 NM_001081017 ENSMUSG00000021198 Unc79 9030205A07Rik|KIAA1409|Kiaa1409 unc-79 homolog (C. elegans) 0.012821 0.458599 7.772898 chr4-814 chr4 136175609 136175765 + 25.4 NA Intergenic Intergenic -4767 NM_007572 12259 Mm.439957 NM_007572 ENSMUSG00000036887 C1qa AI255395|C1q complement component 1, q subcomponent, alpha polypeptide 0.000000 0.477707 6.170956 chr9-730 chr9 108952098 108952254 + 25.4 NA promoter-TSS (NM_172775) promoter-TSS (NM_172775) -665 NM_172775 235611 Mm.53862 NM_172775 ENSMUSG00000053646 Plxnb1 2900002G15Rik|AU042020|mKIAA0407 plexin B1 0.019231 0.579618 -7.500018 chr1-1103 chr1 169142330 169142486 + 25.4 NA Intergenic Intergenic -2936 NM_001039483 68944 Mm.330045 NM_001039483 ENSMUSG00000052428 Tmco1 1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39 transmembrane and coiled-coil domains 1 0.025641 0.439490 -5.932045 chr3-563 chr3 96720874 96721030 + 25.4 NA promoter-TSS (NM_001162388) promoter-TSS (NM_001162388) 118 NM_001162387 18632 Mm.20901 NM_001162387 ENSMUSG00000028102 Pex11b PEX11beta|Pex11pbeta peroxisomal biogenesis factor 11 beta 0.089744 0.617834 -8.384331 chr3-632 chr3 138513259 138513415 + 25.4 NA Intergenic B4A|SINE|B4 49530 NR_035481 100316706 NR_035481 Mir1956 mmu-mir-1956 microRNA mir-1956 0.000000 0.503185 -3.393056 chr2-745 chr2 63121722 63121878 + 25.4 NA Intergenic Intergenic -136674 NM_133207 170738 Mm.242532 NM_133207 ENSMUSG00000059742 Kcnh7 9330137I11Rik|Kv11.3|erg3 potassium voltage-gated channel, subfamily H (eag-related), member 7 0.000000 0.375796 -4.808916 chr12-702 chr12 106515165 106515321 + 25.4 NA Intergenic Intergenic 103931 NM_001029843 22367 Mm.2981 NM_001029843 ENSMUSG00000021115 Vrk1 51PK vaccinia related kinase 1 0.006410 0.452229 4.832441 chr12-538 chr12 25756561 25756717 + 25.4 NA Intergenic Intergenic -71467 NM_010496 15902 Mm.476766 NM_010496 ENSMUSG00000020644 Id2 AI255428|C78922|Idb2|bHLHb26 inhibitor of DNA binding 2 0.012821 0.515924 -5.725527 chr8-508 chr8 49032462 49032618 + 25.4 NA promoter-TSS (NM_177240) promoter-TSS (NM_177240) 79 NM_203507 192174 Mm.273081 NM_203507 ENSMUSG00000031568 Rwdd4a BC016198|Gm1942|MGC27606 RWD domain containing 4A 0.083333 0.617834 2.936820 chr5-754 chr5 23187011 23187167 + 25.4 NA Intergenic CpG 37401 NR_015554 433855 Mm.205125 XM_001000526 AI506816 - expressed sequence AI506816 0.089744 0.707006 -8.771930 chr1-925 chr1 74241090 74241246 + 25.4 NA intron (NM_001039509, intron 2 of 9) intron (NM_001039509, intron 2 of 9) -3625 NM_027154 69660 Mm.261182 NM_027154 ENSMUSG00000006301 Tmbim1 2310061B02Rik|AA960455|AU024746|C78899|KIAA4161|RECS1|Tmbib1|mKIAA4161 transmembrane BAX inhibitor motif containing 1 0.012821 0.452229 -2.152222 chr8-536 chr8 74600668 74600824 + 25.4 NA promoter-TSS (NM_001029873) promoter-TSS (NM_001029873) 0 NM_001029873 382018 Mm.334606 NM_001029873 ENSMUSG00000034799 Unc13a 2410078G03Rik|C630025L14|Munc13-1 unc-13 homolog A (C. elegans) 0.160256 0.770701 -6.563567 chr15-401 chr15 81791641 81791797 + 25.4 NA Intergenic RMER16|LTR|ERVK -3597 NM_013872 29858 Mm.18939 NM_013872 ENSMUSG00000022474 Pmm1 C77612 phosphomannomutase 1 0.000000 0.420382 -3.135247 chr2-769 chr2 73693308 73693464 + 25.4 NA promoter-TSS (NM_009715) promoter-TSS (NM_009715) 81 NM_009715 11909 Mm.209903 NM_001025093 ENSMUSG00000027104 Atf2 Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|MGC105211|MGC105222|Tg(Gzma-Klra1)7Wum|mXBP activating transcription factor 2 0.076923 0.611465 -8.400531 chr13-476 chr13 100766380 100766536 + 25.4 NA Intergenic L2|LINE|L2 -149699 NM_008634 17755 Mm.474896 NM_008634 ENSMUSG00000052727 Mtap1b A230055D22|AI843217|LC1|MAP1B|MAP5|MGC169657|MGC169658|Mtap-5|Mtap5 microtubule-associated protein 1B 0.019231 0.509554 -5.402773 chr4-849 chr4 148413638 148413794 + 25.4 NA Intergenic Intergenic -16721 NM_023051 65945 Mm.38993 NM_023051 ENSMUSG00000039953 Clstn1 1810034E21Rik|Cst-1|Cstn1 calsyntenin 1 0.006410 0.541401 -3.516886 chr8-512 chr8 56073521 56073677 + 25.4 NA intron (NM_029569, intron 1 of 6) intron (NM_029569, intron 1 of 6) 24572 NM_029569 76294 Mm.33171 NM_029569 ENSMUSG00000031519 Asb5 1110018D09Rik|MGC118455 ankyrin repeat and SOCs box-containing 5 0.006410 0.375796 -7.974578 chr9-738 chr9 112708788 112708944 + 25.4 NA Intergenic Intergenic 607404 NR_033433 620760 Mm.259863 XM_001478934 2900079G21Rik C130083B14|Gm6179 RIKEN cDNA 2900079G21 gene 0.000000 0.484076 -3.470736 chr5-1025 chr5 146551601 146551757 + 25.4 NA intron (NM_153599, intron 1 of 12) intron (NM_153599, intron 1 of 12) 15771 NM_153599 264064 Mm.260576 NM_153599 ENSMUSG00000029635 Cdk8 MGC37111 cyclin-dependent kinase 8 0.006410 0.509554 1.535135 chr17-430 chr17 24264594 24264750 + 25.4 NA Intergenic Intergenic -3325 NM_177375 328778 Mm.266033 XM_283428 ENSMUSG00000079657 Rab26 A830020M03Rik RAB26, member RAS oncogene family 0.000000 0.630573 -3.544475 chr2-780 chr2 79093961 79094117 + 25.4 NA intron (NM_010576, intron 15 of 27) intron (NM_010576, intron 15 of 27) 37775 NM_010576 16401 Mm.31903 NM_010576 ENSMUSG00000027009 Itga4 CD49D integrin alpha 4 0.006410 0.401274 4.698506 chr13-482 chr13 102653802 102653958 + 25.4 NA Intergenic Intergenic 139024 NM_001024955 18708 Mm.259333 NM_001024955 ENSMUSG00000041417 Pik3r1 AA414921|C530050K14|PI3K|p50alpha|p55alpha|p85alpha phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) 0.012821 0.490446 8.344179 chr3-644 chr3 145792865 145793021 + 25.4 NA intron (NM_026993, intron 4 of 5) intron (NM_026993, intron 4 of 5) -68820 NM_009740 12042 Mm.239141 NM_009740 ENSMUSG00000028191 Bcl10 AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10 B-cell leukemia/lymphoma 10 0.006410 0.452229 -2.042791 chr1-992 chr1 95836779 95836935 + 25.4 NA intron (NM_001039219, intron 5 of 7) intron (NM_001039219, intron 5 of 7) -14041 NM_173772 241159 Mm.214565 NM_173772 ENSMUSG00000034000 Neu4 9330166I04 sialidase 4 0.006410 0.503185 -7.281397 chr17-448 chr17 28225735 28225891 + 25.4 NA Intergenic Intergenic -12112 NM_010220 14229 Mm.276405 NM_010220 ENSMUSG00000024222 Fkbp5 51kDa|D17Ertd592e|Dit1|FKBP-5|FKBP51 FK506 binding protein 5 0.006410 0.452229 -1.849452 chr12-727 chr12 111455618 111455774 + 25.4 NA Intergenic Intergenic -28868 NM_175207 74251 Mm.250989 NM_175207 ENSMUSG00000037904 Ankrd9 2500003O20Rik ankyrin repeat domain 9 0.025641 0.522293 -1.378200 chr11-887 chr11 109241687 109241843 + 25.4 NA promoter-TSS (NM_025275) promoter-TSS (NM_025275) -270 NM_025275 13929 Mm.211850 NM_025275 ENSMUSG00000020610 Amz2 AA408420|ESTM12|X83328 archaelysin family metallopeptidase 2 0.115385 0.668790 -5.508620 chr7-412 chr7 25364341 25364497 + 25.4 NA intron (NM_007533, intron 1 of 8) intron (NM_007533, intron 1 of 8) 3102 NM_007533 12039 Mm.25848 NM_007533 ENSMUSG00000060376 Bckdha - branched chain ketoacid dehydrogenase E1, alpha polypeptide 0.019231 0.452229 -2.972178 chr9-657 chr9 65101734 65101890 + 25.4 NA intron (NM_011802, intron 3 of 13) intron (NM_011802, intron 3 of 13) 9512 NM_011802 270166 Mm.30088 NM_001044389 ENSMUSG00000015357 Clpx AU014732|E330029I21 caseinolytic peptidase X (E.coli) 0.012821 0.407643 -2.751240 chr1-1051 chr1 139918153 139918309 + 25.4 NA intron (NM_011210, intron 9 of 29) intron (NM_011210, intron 9 of 29) 73485 NM_001111316 19264 Mm.391573 NM_001111316 ENSMUSG00000026395 Ptprc B220|CD45R|Cd45|Ly-5|Lyt-4|T200|loc protein tyrosine phosphatase, receptor type, C 0.000000 0.394904 -4.971229 chr18-375 chr18 80666088 80666244 + 25.4 NA Intergenic Intergenic -34440 NM_026295 67655 Mm.312893 NM_026295 ENSMUSG00000033323 Ctdp1 4930563P03Rik|AW553592 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 0.019231 0.522293 -1.538784 chr2-728 chr2 50359655 50359811 + 25.4 NA Intergenic Intergenic -241047 NM_133839 109129 Mm.29214 NM_133839 ENSMUSG00000026766 Mmadhc 2010311D03Rik|AI314967 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 0.019231 0.375796 -7.020093 chr1-874 chr1 51966656 51966812 + 25.4 NA intron (NM_011487, intron 3 of 23) intron (NM_011487, intron 3 of 23) 13946 NM_011487 20849 Mm.1550 NM_011487 ENSMUSG00000062939 Stat4 - signal transducer and activator of transcription 4 0.000000 0.363057 -0.111004 chr2-890 chr2 165660235 165660391 + 25.4 NA Intergenic Intergenic -23528 NM_008679 17979 Mm.476883 NM_008679 ENSMUSG00000027678 Ncoa3 2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip nuclear receptor coactivator 3 0.012821 0.496815 -5.152815 chr14-211 chr14 19343441 19343597 + 25.4 NA intron (NM_030180, intron 19 of 20) intron (NM_030180, intron 19 of 20) -8394 NM_008914 19056 Mm.474197 NM_008914 ENSMUSG00000021816 Ppp3cb 1110063J16Rik|Calnb|CnAbeta protein phosphatase 3, catalytic subunit, beta isoform 0.000000 0.407643 -1.746361 chr2-722 chr2 40532762 40532918 + 25.4 NA intron (NM_053011, intron 72 of 90) intron (NM_053011, intron 72 of 90) -1484493 NM_024209 67857 Mm.392662 NM_024209 ENSMUSG00000026753 Ppp6c 2310003C10Rik protein phosphatase 6, catalytic subunit 0.012821 0.388535 -1.821864 chr6-527 chr6 59138445 59138601 + 25.4 NA promoter-TSS (NM_001081145) promoter-TSS (NM_001081145) 76 NM_001081145 68140 Mm.25843 NM_001081145 ENSMUSG00000049232 Tigd2 3632410O17Rik tigger transposable element derived 2 0.141026 0.719745 2.643680 chr1-1076 chr1 159349457 159349613 + 25.4 NA intron (NM_033354, intron 2 of 27) intron (NM_033354, intron 2 of 27) 6063 NR_027641 89867 Mm.87114 NM_001159986 ENSMUSG00000026589 Sec16b Lztr2|Rgpr|Rgpr-p117 SEC16 homolog B (S. cerevisiae) 0.019231 0.464968 5.233357 chr14-296 chr14 109350768 109350924 + 25.4 NA Intergenic Intergenic 286140 NM_175499 239250 Mm.49728 NM_175499 ENSMUSG00000045871 Slitrk6 4832410J21Rik|Sltk6 SLIT and NTRK-like family, member 6 0.006410 0.350318 -0.109510 chr17-473 chr17 33390422 33390578 + 25.4 NA Intergenic Intergenic -2045 NM_020581 57875 Mm.196189 NM_020581 ENSMUSG00000002289 Angptl4 Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158 angiopoietin-like 4 0.000000 0.522293 0.523963 chr4-728 chr4 98485607 98485763 + 25.4 NA intron (NM_026082, intron 22 of 47) intron (NM_026082, intron 22 of 47) -37287 NM_013913 30924 Mm.28341 NM_013913 ENSMUSG00000028553 Angptl3 hypl angiopoietin-like 3 0.012821 0.490446 -2.534689 chr4-846 chr4 148125865 148126021 + 25.4 NA intron (NM_207682, intron 2 of 46) intron (NM_207682, intron 2 of 46) 25555 NM_207682 16561 Mm.474289 NM_008441 ENSMUSG00000063077 Kif1b A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204|mKIAA0591 kinesin family member 1B 0.006410 0.445860 -0.742319 chr16-299 chr16 10041531 10041687 + 25.4 NA Intergenic Intergenic -42196 NM_026594 68172 Mm.23690 NM_026594 ENSMUSG00000039209 Rpl39l 4930517K11Rik ribosomal protein L39-like 0.032051 0.547771 3.480631 chr1-894 chr1 61742182 61742338 + 25.4 NA intron (NM_001081050, intron 2 of 22) intron (NM_001081050, intron 2 of 22) 169161 NM_001081050 72823 Mm.441881 NM_001081050 ENSMUSG00000052062 Pard3b 1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta|RP23-20G7.1 par-3 partitioning defective 3 homolog B (C. elegans) 0.000000 0.318471 0.096549 chr5-763 chr5 28496771 28496927 + 25.4 NA 5' UTR (NM_010134, exon 1 of 2) 5' UTR (NM_010134, exon 1 of 2) 367 NM_010134 13799 Mm.4298 NM_010134 ENSMUSG00000039095 En2 BB131122|En-2 engrailed 2 0.173077 0.808917 -6.929618 chrX-128 chrX 156955382 156955538 + 25.4 NA Intergenic Intergenic -105680 NM_001103367 24004 Mm.477153 NM_001103367 ENSMUSG00000043518 Rai2 3f8 retinoic acid induced 2 0.000000 0.350318 -0.334808 chr4-745 chr4 106063281 106063437 + 25.4 NA intron (NM_053272, intron 2 of 8) intron (NM_053272, intron 2 of 8) 4390 NM_053272 74754 Mm.133370 NM_053272 ENSMUSG00000034926 Dhcr24 2310076D10Rik|5830417J06Rik|mKIAA0018 24-dehydrocholesterol reductase 0.025641 0.445860 -5.568562 chr10-517 chr10 80432242 80432398 + 25.4 NA 3' UTR (NM_134135, exon 2 of 2) 3' UTR (NM_134135, exon 2 of 2) -3814 NM_145217 208666 Mm.44995 NM_145217 ENSMUSG00000043670 Diras1 Di-Ras1|Gbts1|RIG DIRAS family, GTP-binding RAS-like 1 0.019231 0.535032 2.704128 chr8-499 chr8 46762625 46762781 + 25.4 NA Intergenic B1_Mur2|SINE|Alu -1855 NM_028066 109821 Mm.33326 NM_028066 ENSMUSG00000031645 F11 1600027G01Rik|AI503996|Cf11|FXI coagulation factor XI 0.000000 0.464968 -0.808031 chr9-705 chr9 94346856 94347012 + 25.4 NA exon (NM_001033145, exon 1 of 3) exon (NM_001033145, exon 1 of 3) 499 NM_001033145 68861 Mm.258746 NM_001033145 ENSMUSG00000045414 1190002N15Rik GoPro49 RIKEN cDNA 1190002N15 gene 0.147436 0.713376 3.325009 chr11-720 chr11 54653491 54653647 + 25.4 NA Intergenic B3A|SINE|B2 -22443 NM_178626 72729 Mm.431861 NM_178626 ENSMUSG00000052298 Cdc42se2 2810404F18Rik|AA408783|AA536669|SPEC2 CDC42 small effector 2 0.000000 0.471338 -2.979999 chr11-838 chr11 97519260 97519416 + 25.4 NA promoter-TSS (NM_011971) promoter-TSS (NM_011971) -185 NM_011971 26446 Mm.21874 NM_011971 ENSMUSG00000069744 Psmb3 AL033320|C10-II|MGC106850 proteasome (prosome, macropain) subunit, beta type 3 0.064103 0.541401 -1.189985 chr3-552 chr3 89620479 89620635 + 25.4 NA intron (NM_080466, intron 1 of 7) intron (NM_080466, intron 1 of 7) 14467 NM_080466 140493 Mm.120250 NM_080466 ENSMUSG00000000794 Kcnn3 KCa2.3|MGC123421|MGC123422|SK3|SKCA3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 0.012821 0.573248 -7.876428 chr2-721 chr2 35498183 35498339 + 25.4 NA intron (NM_001114125, intron 3 of 16) intron (NM_001114125, intron 3 of 16) -15741 NM_001001602 69601 Mm.29629 NM_001001602 ENSMUSG00000026883 Dab2ip 2310011D08Rik|AI480459|Aip1|KIAA1743|MGC144147|mKIAA1743 disabled homolog 2 (Drosophila) interacting protein 0.006410 0.535032 1.535135 chr8-559 chr8 104309192 104309348 + 25.4 NA Intergenic Intergenic 1364970 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|MGC25339 cadherin 11 0.000000 0.426752 -2.774579 chr9-731 chr9 109690068 109690224 + 25.4 NA promoter-TSS (NM_018757) promoter-TSS (NM_018757) -53 NM_018757 54369 Mm.12951 NM_018757 ENSMUSG00000032478 Nme6 nm23-M6 non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) 0.044872 0.636943 -3.100181 chr2-923 chr2 179222075 179222231 + 25.4 NA Intergenic Intergenic -149732 NM_009867 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-cadherin|Rcad cadherin 4 0.006410 0.566879 -4.761120 chr19-212 chr19 17017802 17017958 + 25.4 NA Intergenic Intergenic -5256 NM_181348 353211 Mm.480716 NM_181348 Prune2 6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|KIAA0367|mKIAA0367 prune homolog 2 (Drosophila) 0.032051 0.509554 -2.152221 chr10-593 chr10 127079861 127080017 + 25.4 NA promoter-TSS (NM_001113211) promoter-TSS (NM_001113211) -74 NM_173732 210035 Mm.251075 NM_001113211 ENSMUSG00000040195 Tmem194 MGC40914|Tmem194a transmembrane protein 194 0.102564 0.738854 -5.152876 chr12-651 chr12 83859687 83859843 + 25.4 NA intron (NM_015812, intron 2 of 16) intron (NM_015812, intron 2 of 16) 323880 NM_015812 50779 Mm.153013 NM_015812 ENSMUSG00000021219 Rgs6 - regulator of G-protein signaling 6 0.000000 0.471338 -2.902530 chr5-859 chr5 93444962 93445118 + 25.4 NA intron (NM_181728, intron 2 of 9) intron (NM_181728, intron 2 of 9) -6563 NM_019494 56066 Mm.131723 XM_903598 ENSMUSG00000060183 Cxcl11 CXC11|H174|I-TAC|IP9|ITAC|SCYB9B|Scyb11|b-R1|betaR1 chemokine (C-X-C motif) ligand 11 0.006410 0.445860 -3.623418 chr10-527 chr10 83668437 83668593 + 25.4 NA Intergenic Intergenic 201755 NM_001004363 77976 Mm.25874 NM_001004363 ENSMUSG00000020032 Nuak1 AU014801|AW494241|B230104P22Rik|MGC90816|Omphk1 NUAK family, SNF1-like kinase, 1 0.012821 0.560510 -0.366421 chr8-518 chr8 67778834 67778990 + 25.4 NA promoter-TSS (NM_178633) promoter-TSS (NM_178633) -106 NM_178633 77113 Mm.350347 XM_001475462 ENSMUSG00000031605 Klhl2 6030411N21Rik|ABP-KELCH|AU020744|KIAA4249|Mav|mKIAA4249 kelch-like 2, Mayven (Drosophila) 0.205128 0.840764 -7.142542 chr12-600 chr12 70102419 70102575 + 25.4 NA promoter-TSS (NM_146035) promoter-TSS (NM_146035) 175 NM_025589 66483 Mm.480197 NM_025589 ENSMUSG00000049751 Rpl36al 2410038A03Rik|RPL36A ribosomal protein L36A-like 0.108974 0.700637 -3.285412 chr11-772 chr11 74895061 74895217 + 25.4 NA intron (NM_001002764, intron 13 of 18) intron (NM_001002764, intron 13 of 18) -12953 NR_030454 735274 NR_030454 Mir684-1 Mirn684-1 microRNA 684-1 0.012821 0.464968 -2.445215 chr5-800 chr5 45781625 45781781 + 25.4 NA promoter-TSS (NM_024434) promoter-TSS (NM_024434) 82 NM_024434 66988 Mm.286830 NM_024434 ENSMUSG00000039682 Lap3 2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps leucine aminopeptidase 3 0.134615 0.732484 0.917814 chr5-870 chr5 97366006 97366162 + 25.4 NA Intergenic B4A|SINE|B4 -14186 NM_198422 231474 Mm.332505 NM_198422 ENSMUSG00000055725 Paqr3 6330415A20Rik|AY424292|RKTG progestin and adipoQ receptor family member III 0.006410 0.509554 5.059175 chr17-482 chr17 36559648 36559804 + 25.4 NA 5' UTR (NM_029632, exon 1 of 3) 5' UTR (NM_029632, exon 1 of 3) 119 NM_029632 76497 Mm.46176 NM_029632 ENSMUSG00000036398 Ppp1r11 1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5 protein phosphatase 1, regulatory (inhibitor) subunit 11 0.032051 0.585987 5.331816 chr3-519 chr3 60677467 60677623 + 25.4 NA intron (NM_020007, intron 2 of 9) intron (NM_020007, intron 2 of 9) 88365 NM_020007 56758 Mm.255723 XM_001474780 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 muscleblind-like 1 (Drosophila) 0.006410 0.515924 -5.702188 chr3-617 chr3 129279480 129279636 + 25.4 NA intron (NM_007934, intron 11 of 19) intron (NM_007934, intron 11 of 19) 45213 NM_007934 13809 Mm.1193 NM_007934 ENSMUSG00000028024 Enpep 6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51 glutamyl aminopeptidase 0.000000 0.375796 -1.477458 chr17-435 chr17 26326967 26327123 + 25.4 NA intron (NM_026170, intron 1 of 9) intron (NM_026170, intron 1 of 9) 37934 NM_026170 67458 Mm.30496 NM_026170 ENSMUSG00000001576 Ergic1 1200007D18Rik|MGC102406|maa-136 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 0.019231 0.509554 -3.614209 chr11-818 chr11 88665873 88666029 + 25.4 NA intron (NM_001042541, intron 1 of 10) intron (NM_001042541, intron 1 of 10) 1642 NM_009648 11640 Mm.2969 NM_001042541 ENSMUSG00000018428 Akap1 AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84 A kinase (PRKA) anchor protein 1 0.000000 0.471338 -4.648459 chr13-401 chr13 45472621 45472777 + 25.4 NA Intergenic Intergenic -45741 NM_025508 66355 Mm.290802 NM_025508 ENSMUSG00000000253 Gmpr 2310004P21Rik|AV028449 guanosine monophosphate reductase 0.032051 0.477707 -7.221567 chr8-461 chr8 15012961 15013117 + 25.4 NA intron (NM_029116, intron 1 of 1) intron (NM_029116, intron 1 of 1) 2038 NM_029116 74901 Mm.46675 XM_001474596 ENSMUSG00000055675 Kbtbd11 2900016B01Rik|4930465M17Rik|mKIAA0711 kelch repeat and BTB (POZ) domain containing 11 0.012821 0.471338 8.323606 chr15-395 chr15 78585970 78586126 + 25.4 NA intron (NM_008595, intron 6 of 7) intron (NM_008595, intron 6 of 7) 14652 NM_008595 17305 Mm.149235 NM_008595 ENSMUSG00000018169 Mfng AW546563 MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 0.012821 0.471338 1.881493 chr7-515 chr7 110948152 110948308 + 25.4 NA Intergenic Intergenic -34374 NR_015573 75479 Mm.460324 NR_015573 1700012D14Rik - RIKEN cDNA 1700012D14 gene 0.019231 0.541401 2.671267 chr9-745 chr9 117124756 117124912 + 25.4 NA intron (NM_001172121, intron 2 of 14) intron (NM_001172121, intron 2 of 14) -23653 NM_001172126 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.006410 0.471338 -5.908706 chr6-640 chr6 118620302 118620458 + 25.4 NA intron (NM_001159535, intron 26 of 46) intron (NM_001159535, intron 26 of 46) -92505 NM_001081112 232339 Mm.276116 NM_001081112 ENSMUSG00000007827 Ankrd26 5730521P14Rik|BC008111|mKIAA1074 ankyrin repeat domain 26 0.000000 0.369427 -2.945824 chr4-876 chr4 153250120 153250276 + 25.4 NA intron (NM_001177995, intron 3 of 15) intron (NM_001177995, intron 3 of 15) -106503 NM_001112744 230972 Mm.38481 XM_149562 ENSMUSG00000029032 Arhgef16 - Rho guanine nucleotide exchange factor (GEF) 16 0.019231 0.503185 -6.887424 chr9-587 chr9 37445620 37445776 + 25.4 NA Intergenic Intergenic 16253 NM_030553 80706 Mm.154800 NM_030553 ENSMUSG00000078078 Olfr160 M72|MOR171-3|Olfr7b olfactory receptor 160 0.019231 0.458599 8.822980 chr3-598 chr3 120910143 120910299 + 25.4 NA Intergenic Intergenic 253497 NM_028456 66568 Mm.263163 NM_025637 ENSMUSG00000028133 Rwdd3 2510027J23Rik|3110037C01Rik|AI035684|AI662458|MGC150017|MGC170967|MGC170969|X2CR1 RWD domain containing 3 0.006410 0.407643 -6.343729 chr5-887 chr5 104356312 104356468 + 25.4 NA Intergenic Intergenic -2000 NM_010097 13602 Mm.29027 NM_010097 ENSMUSG00000029309 Sparcl1 Ecm2|Sc1|hevin|mast9 SPARC-like 1 0.012821 0.426752 -0.805374 chr16-359 chr16 70527892 70528048 + 25.4 NA Intergenic Intergenic 331204 NM_028803 74185 Mm.396102 NM_028803 ENSMUSG00000022707 Gbe1 2310045H19Rik|2810426P10Rik|D16Ertd536e glucan (1,4-alpha-), branching enzyme 1 0.000000 0.426752 3.007190 chr6-557 chr6 85450232 85450388 + 25.4 NA exon (NM_001001160, exon 3 of 14) exon (NM_001001160, exon 3 of 14) 18234 NM_001001160 330369 Mm.38777 NM_001001160 ENSMUSG00000047013 Fbxo41 9630017H13|D6Ertd538e F-box protein 41 0.115385 0.656051 1.512659 chr7-482 chr7 83902432 83902588 + 25.4 NA intron (NM_030728, intron 1 of 28) intron (NM_030728, intron 1 of 28) 60180 NM_030728 80982 Mm.160389 NM_030728 ENSMUSG00000052353 9930013L23Rik 12H19.01.T7|6330404C01Rik|AY007814 RIKEN cDNA 9930013L23 gene 0.000000 0.592357 -4.245619 chr5-867 chr5 96980966 96981122 + 25.4 NA exon (NM_175473, exon 56 of 74) exon (NM_175473, exon 56 of 74) -52642 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 0.038462 0.541401 2.141699 chr2-926 chr2 180045652 180045808 + 25.4 NA Intergenic Intergenic -3043 NM_144500 228983 Mm.253578 NM_144500 ENSMUSG00000039050 Osbpl2 C130070J12Rik|KIAA0772|MGC28451|ORP-2|Orp2|mKIAA0772 oxysterol binding protein-like 2 0.006410 0.611465 -3.918660 chr6-467 chr6 28657512 28657668 + 25.4 NA intron (NM_019776, intron 13 of 23) intron (NM_019776, intron 13 of 23) 124167 NM_138682 192198 Mm.443660 NM_138682 ENSMUSG00000049939 Lrrc4 MBAG1|NGL-2|NLG-2|Nag14 leucine rich repeat containing 4 0.006410 0.426752 -6.026166 chr7-427 chr7 34825296 34825452 + 25.4 NA Intergenic Intergenic -2678 NM_007678 12606 Mm.349667 NM_007678 ENSMUSG00000034957 Cebpa C/ebpalpha|CBF-A|Cebp CCAAT/enhancer binding protein (C/EBP), alpha 0.006410 0.547771 -9.533987 chr5-905 chr5 112076449 112076605 + 25.4 NA Intergenic Intergenic 254664 NR_015546 330164 Mm.193276 NM_177875 C130026L21Rik MGC106570 RIKEN cDNA C130026L21 gene 0.012821 0.535032 1.269740 chr12-545 chr12 29824859 29825015 + 25.4 NA Intergenic Intergenic -289552 NM_001093775 17933 Mm.418721 XM_001480703 ENSMUSG00000061911 Myt1l 2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106 myelin transcription factor 1-like 0.006410 0.464968 -4.533712 chr15-352 chr15 39774034 39774190 + 25.4 NA promoter-TSS (NM_172814) promoter-TSS (NM_172814) -281 NM_172814 239393 Mm.39874 NM_172814 ENSMUSG00000022305 Lrp12 AI848829|C820005L12Rik low density lipoprotein-related protein 12 0.147436 0.745223 -6.171461 chr15-345 chr15 37136957 37137113 + 25.4 NA Intergenic Intergenic -40589 NM_026496 252973 Mm.391911 NM_026496 ENSMUSG00000022286 Grhl2 0610015A08Rik|BOM|Tcfcp2l3 grainyhead-like 2 (Drosophila) 0.019231 0.388535 4.296988 chr1-1109 chr1 172341187 172341343 + 25.4 NA intron (NM_001109985, intron 2 of 9) intron (NM_001109985, intron 2 of 9) 52520 NM_027528 70729 Mm.65316 NM_001109985 ENSMUSG00000038473 Nos1ap 6330408P19Rik|Capon nitric oxide synthase 1 (neuronal) adaptor protein 0.012821 0.503185 -5.724465 chr13-365 chr13 20041483 20041639 + 25.4 NA Intergenic Intergenic -151328 NM_080288 140580 Mm.342392 NM_080288 ENSMUSG00000041112 Elmo1 6330578D22Rik|AI173001|C230095H21Rik|CED-12|KIAA0281|mKIAA0281 engulfment and cell motility 1, ced-12 homolog (C. elegans) 0.019231 0.420382 -4.853722 chr16-340 chr16 33804247 33804403 + 25.4 NA intron (NM_001145884, intron 4 of 14) intron (NM_001145884, intron 4 of 14) 54914 NM_001145884 16419 Mm.6424 NM_001145884 ENSMUSG00000022817 Itgb5 AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5 integrin beta 5 0.012821 0.439490 -3.541013 chr4-841 chr4 146712251 146712407 + 25.4 NA promoter-TSS (NM_010244) promoter-TSS (NM_010244) 190 NM_001025365 28010 Mm.250504 NM_001025365 ENSMUSG00000029022 Miip AA553001|AI853621|D4Wsu114e|IIP45 migration and invasion inhibitory protein 0.076923 0.656051 -3.978765 chr4-620 chr4 13728284 13728440 + 25.4 NA intron (NM_009822, intron 1 of 10) intron (NM_009822, intron 1 of 10) 16434 NM_009822 12395 Mm.470961 NM_001111026 ENSMUSG00000006586 Runx1t1 Cbfa2t1h|ETO|MTG8 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.012821 0.515924 -4.807614 chr3-492 chr3 30962639 30962795 + 25.4 NA Intergenic Intergenic -20996 NM_027016 69276 Mm.26017 NM_027016 ENSMUSG00000027706 Sec62 3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1 SEC62 homolog (S. cerevisiae) 0.006410 0.337580 -3.267233 chr4-721 chr4 95352788 95352944 + 25.4 NA intron (NM_001113412, intron 14 of 15) intron (NM_001113412, intron 14 of 15) -106530 NM_030014 77963 Mm.49994 NM_030014 ENSMUSG00000028572 Hook1 A930033L17Rik|azh hook homolog 1 (Drosophila) 0.006410 0.477707 -3.305613 chr9-559 chr9 21345651 21345807 + 25.4 NA 3' UTR (NM_178619, exon 2 of 2) 3' UTR (NM_178619, exon 2 of 2) -2581 NM_138303 74766 Mm.475712 NM_138303 ENSMUSG00000032182 Yipf2 1300010K09Rik Yip1 domain family, member 2 0.006410 0.458599 0.975274 chr13-380 chr13 32666448 32666604 + 25.4 NA Intergenic ORR1D1|LTR|MaLR 122718 NM_001166030 238564 Mm.60041 XM_111421 Mylk4 EG238564 myosin light chain kinase family, member 4 0.006410 0.509554 -2.624119 chr7-611 chr7 144480299 144480455 + 25.4 NA intron (NM_178642, intron 2 of 24) intron (NM_178642, intron 2 of 24) 67491 NM_178642 101772 Mm.26700 NM_178642 ENSMUSG00000031075 Ano1 AU040576|AW559012|Tmem16a anoctamin 1, calcium activated chloride channel 0.006410 0.560510 -2.448762 chr2-716 chr2 33487490 33487646 + 25.4 NA Intergenic Intergenic -25048 NM_010725 16917 Mm.39825 NM_010725 ENSMUSG00000038765 Lmx1b LMX1.1|LMX1.2|MGC159172 LIM homeobox transcription factor 1 beta 0.012821 0.605096 -1.173923 chr5-964 chr5 129726990 129727146 + 25.4 NA Intergenic Intergenic -88870 NM_172276 231769 Mm.288714 NM_172276 ENSMUSG00000029439 Srsf8 1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8 serine/arginine-rich splicing factor 8 0.012821 0.541401 -4.569772 chr6-571 chr6 89557794 89557950 + 25.4 NA intron (NM_001167736, intron 1 of 6) intron (NM_001167736, intron 1 of 6) 3421 NM_025351 66098 Mm.20313 NM_001167736 ENSMUSG00000030086 Chchd6 0710001P09Rik|1700021B03Rik coiled-coil-helix-coiled-coil-helix domain containing 6 0.012821 0.515924 1.018312 chr17-564 chr17 87431896 87432052 + 25.4 NA Intergenic Intergenic -76713 NM_007589 12314 Mm.329243 NM_007589 ENSMUSG00000036438 Calm2 1500001E21Rik|AL024017|Calm1|Calm3 calmodulin 2 0.012821 0.503185 0.951934 chr8-609 chr8 128275434 128275590 + 25.4 NA Intergenic Intergenic 103288 NM_001081337 244668 Mm.463243 NM_001081337 ENSMUSG00000001995 Sipa1l2 BC058408|mKIAA1389 signal-induced proliferation-associated 1 like 2 0.019231 0.490446 -3.173403 chr6-604 chr6 99340466 99340622 + 25.4 NA Intergenic Intergenic -212063 NM_053202 108655 Mm.461753 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 0.019231 0.509554 -4.317318 chr16-321 chr16 25451150 25451306 + 25.4 NA Intergenic Intergenic -147885 NM_001127261 22061 Mm.20894 NM_001127259 ENSMUSG00000022510 Trp63 AI462811|Ket|MGC115972|P51/P63|P63|P73l|Tp63|Trp53rp1 transformation related protein 63 0.012821 0.464968 5.203840 chr7-474 chr7 80677083 80677239 + 25.4 NA promoter-TSS (NM_016721) promoter-TSS (NM_016721) -317 NM_016721 29875 Mm.207619 NM_016721 ENSMUSG00000030536 Iqgap1 AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051 IQ motif containing GTPase activating protein 1 0.025641 0.522293 -2.494103 chr11-902 chr11 114971422 114971578 + 25.4 NA intron (NM_021411, intron 1 of 8) intron (NM_021411, intron 1 of 8) 1233 NM_021411 58222 Mm.143789 NM_001163753 ENSMUSG00000020732 Rab37 B230331O03Rik|B230354I04Rik|MGC157622 RAB37, member of RAS oncogene family 0.006410 0.547771 1.442035 chr4-609 chr4 7142565 7142721 + 25.4 NA Intergenic Intergenic -224773 NM_145711 252838 Mm.435828 NM_145711 ENSMUSG00000041272 Tox 1700007F02Rik|KIAA0808 thymocyte selection-associated high mobility group box 0.012821 0.343949 -8.055452 chr7-572 chr7 131863511 131863667 + 25.4 NA Intergenic Intergenic 58787 NM_173410 233919 Mm.208740 NM_173410 ENSMUSG00000040125 Gpr26 9630036A11Rik|A730021D22 G protein-coupled receptor 26 0.012821 0.484076 -5.172399 chr1-1153 chr1 194158157 194158313 + 25.4 NA intron (NM_001038607, intron 10 of 10) intron (NM_001038607, intron 10 of 10) 266640 NM_010600 16510 Mm.4489 NM_001038607 ENSMUSG00000058248 Kcnh1 M-eag|MGC124419|MGC124420 potassium voltage-gated channel, subfamily H (eag-related), member 1 0.000000 0.471338 -6.585825 chr2-900 chr2 167456440 167456596 + 25.4 NA Intergenic Intergenic 74106 NR_015500 329562 Mm.123101 NM_177851 A530013C23Rik - RIKEN cDNA A530013C23 gene 0.038462 0.579618 -2.613789 chr10-441 chr10 12544724 12544880 + 25.4 NA intron (NM_011682, intron 1 of 73) intron (NM_011682, intron 1 of 73) 7123 NM_011682 22288 Mm.331784 NM_011682 ENSMUSG00000019820 Utrn AA589569|DRP|Dmdl utrophin 0.012821 0.503185 0.003656 chr6-501 chr6 48621318 48621474 + 25.4 NA 3' UTR (NM_174990, exon 3 of 3) 3' UTR (NM_174990, exon 3 of 3) 7233 NM_174990 107526 Mm.479937 NM_174990 ENSMUSG00000054435 Gimap4 AU019574|E430007K16Rik|IMAP4|Ian1|MGC11734|mIAN1 GTPase, IMAP family member 4 0.000000 0.414013 -1.482968 chr10-464 chr10 40845530 40845686 + 25.4 NA Intergenic Lx7|LINE|L1 -85609 NM_199058 140741 Mm.290693 NM_199058 ENSMUSG00000046922 Gpr6 AI852874|Gm233 G protein-coupled receptor 6 0.000000 0.445860 -1.882675 chr10-458 chr10 25603829 25603985 + 25.4 NA Intergenic Lx9|LINE|L1 -163763 NR_028030 100040851 Mm.478630 XM_001475247 ENSMUSG00000039098 Gm9767 ENSMUSG00000039098 predicted gene 9767 0.019231 0.509554 -0.070709 chr9-573 chr9 28030574 28030730 + 25.4 NA intron (NM_177906, intron 1 of 7) intron (NM_177906, intron 1 of 7) 489938 NM_177906 330908 Mm.379474 NM_177906 ENSMUSG00000062257 Opcml 2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|MGC99974|Obcam opioid binding protein/cell adhesion molecule-like 0.006410 0.541401 3.335101 chr13-439 chr13 63740258 63740414 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -84205 NM_001013608 76251 Mm.186610 NM_001013608 ENSMUSG00000021470 0610007P08Rik 1700019D06Rik|9330134C04Rik|MGC100170|Rad26l|Sr278 RIKEN cDNA 0610007P08 gene 0.006410 0.458599 -5.831401 chr8-436 chr8 10539765 10539921 + 25.4 NA intron (NM_001081397, intron 28 of 35) intron (NM_001081397, intron 28 of 35) 385949 NM_001081397 244281 Mm.422761 NM_001081397 ENSMUSG00000039057 Myo16 C230040D10Rik|Gm1105|KIAA0865|mKIAA0865 myosin XVI 0.012821 0.535032 -4.970629 chr12-563 chr12 39734591 39734747 + 25.4 NA Intergenic Intergenic 440536 NM_001163154 14009 Mm.4866 NM_001163154 ENSMUSG00000004151 Etv1 ER81|Etsrp81 ets variant gene 1 0.000000 0.394904 3.193982 chr9-683 chr9 75180099 75180255 + 25.4 NA intron (NM_027418, intron 3 of 5) intron (NM_027418, intron 3 of 5) 15091 NM_027418 50772 Mm.18856 NM_015806 ENSMUSG00000042688 Mapk6 2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6 mitogen-activated protein kinase 6 0.006410 0.363057 4.959444 chr4-854 chr4 149420278 149420434 + 25.4 NA intron (NM_001085492, intron 12 of 22) intron (NM_001085492, intron 12 of 22) 75618 NM_173774 242773 Mm.29280 NM_173774 ENSMUSG00000039838 Slc45a1 C230078B22|Dnb5 solute carrier family 45, member 1 0.012821 0.363057 -5.598669 chr6-518 chr6 54014403 54014559 + 25.4 NA intron (NM_001163640, intron 1 of 12) intron (NM_001163640, intron 1 of 12) 44972 NM_001163640 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.000000 0.452229 5.342546 chr1-982 chr1 92479524 92479680 + 25.4 NA Intergenic Intergenic 45774 NM_133805 108679 Mm.119177 NM_133805 ENSMUSG00000034432 Cops8 9430009J09Rik|AA408242|Csn8|Sgn8 COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana) 0.032051 0.522293 2.201681 chr1-967 chr1 82857734 82857890 + 25.4 NA Intergenic Intergenic 59660 NM_030556 80721 Mm.261542 NM_030556 ENSMUSG00000038496 Slc19a3 A230084E24Rik|AI788884|MGC129326|MGC129327|ThTr2 solute carrier family 19 (sodium/hydrogen exchanger), member 3 0.000000 0.439490 -0.979371 chr5-895 chr5 108869997 108870153 + 25.4 NA promoter-TSS (NM_153569) promoter-TSS (NM_153569) -34 NM_153569 231580 Mm.276647 NM_153569 ENSMUSG00000062234 Gak D130045N16Rik|MGC31204 cyclin G associated kinase 0.128205 0.694268 -2.177162 chr8-442 chr8 11689595 11689751 + 25.4 NA Intergenic Intergenic 4813 NR_028307 624710 NR_028307 Gm6524 EG624710 katanin p60 (ATPase-containing) subunit A1 pseudogene 0.006410 0.554140 -3.706529 chr16-343 chr16 36462358 36462514 + 25.4 NA intron (NM_013803, intron 1 of 6) intron (NM_013803, intron 1 of 6) 18937 NM_013803 12374 Mm.103619 NM_013803 ENSMUSG00000051980 Casr CaR|Gprc2a calcium-sensing receptor 0.012821 0.535032 -1.711726 chr5-850 chr5 86220736 86220892 + 25.4 NA Intergenic Intergenic -728871 NM_007937 13839 Mm.438006 NM_007937 ENSMUSG00000029245 Epha5 AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk Eph receptor A5 0.000000 0.356688 1.073378 chr9-746 chr9 117502263 117502419 + 25.4 NA Intergenic Intergenic -23730 NM_001172121 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.000000 0.477707 -3.606808 chr11-758 chr11 69908575 69908731 + 25.4 NA promoter-TSS (NM_007493) promoter-TSS (NM_007493) -185 NM_007493 11890 Mm.1357 NM_007493 ENSMUSG00000040963 Asgr2 ASGPR2|Asgr|Asgr-2 asialoglycoprotein receptor 2 0.032051 0.496815 -1.873002 chr11-696 chr11 32596616 32596772 + 25.4 NA intron (NM_134015, intron 2 of 13) intron (NM_134015, intron 2 of 13) 53820 NM_134015 103583 Mm.474118 NM_134015 ENSMUSG00000020271 Fbxw11 2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS|mKIAA0696 F-box and WD-40 domain protein 11 0.006410 0.503185 0.207767 chr3-591 chr3 117008405 117008561 + 25.4 NA Intergenic L1MD3|LINE|L1 -47527 NM_023245 114301 Mm.253736 NM_023245 ENSMUSG00000033377 Palmd 4631423C22Rik|PALML palmdelphin 0.000000 0.401274 -9.655991 chr17-411 chr17 12031340 12031496 + 25.4 NA intron (NM_026644, intron 2 of 8) intron (NM_026644, intron 2 of 8) 68777 NM_026644 68262 Mm.258300 NM_026644 ENSMUSG00000023827 Agpat4 1500003P24Rik 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 0.006410 0.414013 -6.164580 chr12-636 chr12 80008358 80008514 + 25.4 NA promoter-TSS (NM_029988) promoter-TSS (NM_029988) 74 NM_029988 110417 Mm.268317 NM_029988 ENSMUSG00000021120 Pigh 2210416H01Rik|A930028P05Rik|MGC102258 phosphatidylinositol glycan anchor biosynthesis, class H 0.115385 0.656051 0.846016 chr10-448 chr10 17220564 17220720 + 25.4 NA Intergenic Intergenic -192001 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.006410 0.484076 -5.164512 chr10-510 chr10 79169971 79170127 + 25.4 NA promoter-TSS (NM_144528) promoter-TSS (NM_144528) 1 NM_144528 70294 Mm.466670 NM_144528 ENSMUSG00000035890 Rnf126 2610010O19Rik ring finger protein 126 0.205128 0.815287 -10.597183 chr5-826 chr5 66695112 66695268 + 25.4 NA intron (NM_009686, intron 5 of 16) intron (NM_009686, intron 5 of 16) 155931 NM_027602 70918 Mm.23166 NM_027602 ENSMUSG00000029206 Nsun7 4921525L17Rik|MGC141647|MGC141648 NOL1/NOP2/Sun domain family, member 7 0.012821 0.356688 -5.919250 chr2-671 chr2 18630856 18631012 + 25.4 NA intron (NM_001001334, intron 3 of 10) intron (NM_001001334, intron 3 of 10) 14159 NM_001001334 381350 Mm.460742 NM_001001334 ENSMUSG00000037708 BC061194 - cDNA sequence BC061194 0.006410 0.541401 -5.228731 chr16-292 chr16 5674860 5675016 + 25.4 NA Intergenic B4|SINE|B4 -125175 NM_021477 268859 Mm.434732 NM_021477 ENSMUSG00000008658 A2bp1 A2bp|Hrnbp1|fox-1 ataxin 2 binding protein 1 0.000000 0.445860 -2.072309 chr10-479 chr10 61321971 61322127 + 25.4 NA intron (NM_007731, intron 2 of 40) intron (NM_007731, intron 2 of 40) 52416 NM_007731 12817 Mm.300931 NM_007731 ENSMUSG00000058806 Col13a1 - collagen, type XIII, alpha 1 0.006410 0.541401 -5.496303 chr16-352 chr16 50720045 50720201 + 25.4 NA Intergenic L2|LINE|L2 -68002 NR_028300 68190 Mm.139089 XM_916412 5330426P16Rik - RIKEN cDNA 5330426P16 gene 0.006410 0.375796 -4.629728 chr8-434 chr8 10219494 10219650 + 25.4 NA intron (NM_001081397, intron 1 of 35) intron (NM_001081397, intron 1 of 35) 65678 NM_001081397 244281 Mm.422761 NM_001081397 ENSMUSG00000039057 Myo16 C230040D10Rik|Gm1105|KIAA0865|mKIAA0865 myosin XVI 0.006410 0.484076 3.725184 chr2-842 chr2 131249723 131249879 + 25.4 NA intron (NM_013460, intron 1 of 1) intron (NM_013460, intron 1 of 1) 3925 NM_013460 11550 Mm.389380 NM_013460 ENSMUSG00000027335 Adra1d Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR adrenergic receptor, alpha 1d 0.012821 0.464968 0.454966 chr5-1037 chr5 149539316 149539472 + 25.4 NA Intergenic tRNA-Asn-AAC|tRNA|tRNA -36012 NM_009663 11690 Mm.19844 NM_009663 ENSMUSG00000060063 Alox5ap Flap arachidonate 5-lipoxygenase activating protein 0.089744 0.560510 -3.795892 chr9-717 chr9 99167625 99167781 + 25.4 NA exon (NM_177775, exon 1 of 23) exon (NM_177775, exon 1 of 23) 179 NM_177775 272636 Mm.258310 NM_177775 ENSMUSG00000037681 Esyt3 D930024E11|D9Ertd280e|Fam62c|KIAA4186|mKIAA4186 extended synaptotagmin-like protein 3 0.128205 0.738854 -4.419241 chr10-434 chr10 6372757 6372913 + 25.4 NA intron (NM_001170785, intron 1 of 27) intron (NM_001170785, intron 1 of 27) 631 NM_001170786 270685 Mm.184752 NM_001170785 ENSMUSG00000040675 Mthfd1l 2410004L15Rik|AI647056|Fthfsdc1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.141026 0.757962 -4.829997 chr7-594 chr7 141079766 141079922 + 25.4 NA promoter-TSS (NM_001081118) promoter-TSS (NM_001081118) -263 NM_001081118 101471 Mm.248656 NM_001081118 ENSMUSG00000038611 Phrf1 AA673488 PHD and ring finger domains 1 0.083333 0.662420 -0.966330 chr11-703 chr11 49046946 49047102 + 25.4 NA intron (NM_001024846, intron 1 of 4) intron (NM_001024846, intron 1 of 4) 102 NM_009562 22720 Mm.16650 NM_001024846 ENSMUSG00000046311 Zfp62 AI227021 zinc finger protein 62 0.096154 0.726115 -4.283879 chr14-301 chr14 121683527 121683683 + 25.4 NA intron (NM_144844, intron 1 of 23) intron (NM_144844, intron 1 of 23) 14098 NM_144844 110821 Mm.23876 NM_144844 ENSMUSG00000041650 Pcca C79630 propionyl-Coenzyme A carboxylase, alpha polypeptide 0.012821 0.426752 -3.473837 chr12-720 chr12 110337562 110337718 + 25.4 NA Intergenic L1MC3|LINE|L1 146119 NR_029914 723863 NR_029914 Mir410 Mirn410|mmu-mir-410 microRNA 410 0.006410 0.515924 -4.360394 chr15-331 chr15 31288386 31288542 + 25.4 NA intron (NM_027496, intron 1 of 3) intron (NM_027496, intron 1 of 3) 23884 NM_026153 67434 Mm.102470 NM_001164441 ENSMUSG00000022237 Ankrd33b 0610012A05Rik|3021401C12Rik|5730557B15Rik ankyrin repeat domain 33B 0.019231 0.528662 -7.425116 chr17-535 chr17 64514195 64514351 + 25.4 NA intron (NM_008549, intron 1 of 21) intron (NM_008549, intron 1 of 21) 16334 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.012821 0.452229 1.439429 chr11-822 chr11 88844899 88845055 + 25.4 NA Intergenic ORR1E|LTR|MaLR 29485 NM_009546 217069 Mm.248445 NM_009546 ENSMUSG00000000275 Trim25 AA960166|AL022677|EFP|Zfp147 tripartite motif-containing 25 0.000000 0.477707 -3.951082 chr1-962 chr1 82036065 82036221 + 25.4 NA Intergenic Intergenic 134320 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.000000 0.464968 1.368840 chr9-613 chr9 49728483 49728639 + 25.4 NA Intergenic Intergenic -177262 NM_010875 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.019231 0.611465 4.360359 chr9-690 chr9 80107302 80107458 + 25.4 NA intron (NM_022016, intron 12 of 13) intron (NM_022016, intron 12 of 13) 154900 NM_022016 63859 Mm.422780 NM_022016 ENSMUSG00000032343 Impg1 A930015H12Rik|IMP150|SPACR interphotoreceptor matrix proteoglycan 1 0.000000 0.433121 -2.001141 chr5-774 chr5 33059880 33060036 + 25.4 NA intron (NM_177298, intron 3 of 7) intron (NM_177298, intron 3 of 7) 42525 NM_177298 320951 Mm.273765 NM_177298 ENSMUSG00000023452 Pisd 9030221M09Rik phosphatidylserine decarboxylase 0.025641 0.535032 -4.511682 chr12-751 chr12 118927944 118928100 + 25.4 NA Intergenic Intergenic -182480 NM_001166385 20688 Mm.259312 NM_001166385 ENSMUSG00000025323 Sp4 5730497N03Rik|HF-1b|HF1-b trans-acting transcription factor 4 0.012821 0.394904 -1.559555 chr5-864 chr5 93973006 93973162 + 25.4 NA promoter-TSS (NM_001077596) promoter-TSS (NM_001077596) -117 NM_001077596 27428 Mm.46014 NM_001077595 ENSMUSG00000029381 Shroom3 AL022960|D5Ertd287e|Shrm|Shrm3 shroom family member 3 0.115385 0.649682 -4.614170 chr2-930 chr2 180393898 180394054 + 25.4 NA exon (NM_148933, exon 2 of 12) exon (NM_148933, exon 2 of 12) 3591 NM_148933 108115 Mm.133687 NM_148933 ENSMUSG00000038963 Slco4a1 MGC28799|MGC28824|OATP-E|Slc21a12 solute carrier organic anion transporter family, member 4a1 0.038462 0.611465 -4.001246 chr18-336 chr18 49880623 49880779 + 25.4 NA exon (NM_001170960, exon 1 of 4) exon (NM_001170960, exon 1 of 4) 230 NM_026854 68857 Mm.96010 NM_001170960 ENSMUSG00000024505 Dtwd2 1190002H09Rik|8030470C17Rik|AI414673|BB115449 DTW domain containing 2 0.166667 0.808917 -0.754615 chr3-605 chr3 122816887 122817043 + 25.4 NA exon (NM_153422, exon 14 of 21) exon (NM_153422, exon 14 of 21) -70448 NM_007980 14079 Mm.28398 NM_007980 ENSMUSG00000023057 Fabp2 Fabpi|I-FABP fatty acid binding protein 2, intestinal 0.044872 0.496815 0.277244 chr5-789 chr5 37339078 37339234 + 25.4 NA promoter-TSS (NM_178394) promoter-TSS (NM_178394) 51 NM_178394 76071 Mm.85280 NM_178394 ENSMUSG00000063646 Jakmip1 5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1 janus kinase and microtubule interacting protein 1 0.012821 0.624204 -7.281247 chr8-597 chr8 126297539 126297695 + 25.4 NA promoter-TSS (NM_023279) promoter-TSS (NM_023279) -36 NM_023279 22152 Mm.40068 NM_023279 ENSMUSG00000062380 Tubb3 3200002H15Rik|M(beta)3|M(beta)6 tubulin, beta 3 0.102564 0.675159 -8.448168 chr12-693 chr12 103286915 103287071 + 25.4 NA Intergenic Intergenic -7537 NM_172806 238386 Mm.440255 NM_172806 ENSMUSG00000041702 Btbd7 5730507E09Rik|8030448M07|E130118E17Rik|FUP1|MGC49574|mKIAA1525 BTB (POZ) domain containing 7 0.012821 0.535032 -5.846761 chr3-473 chr3 8526776 8526932 + 25.4 NA intron (NM_025285, intron 2 of 4) intron (NM_025285, intron 2 of 4) 34255 NM_025285 20257 Mm.29580 NM_025285 ENSMUSG00000027500 Stmn2 AI159727|SCG10|Scgn10|Stmb2 stathmin-like 2 0.019231 0.394904 -2.607762 chr5-1014 chr5 142253705 142253861 + 25.4 NA intron (NM_177879, intron 16 of 44) intron (NM_177879, intron 16 of 44) -400187 NM_199068 17425 Mm.24214 NM_199068 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf forkhead box K1 0.006410 0.573248 -6.199862 chr15-335 chr15 32233321 32233477 + 25.4 NA intron (NM_009154, intron 1 of 22) intron (NM_009154, intron 1 of 22) -42082 NR_028575 66835 Mm.391938 XM_001475347 Snord123 0610007N19Rik small nucleolar RNA, C/D box 123 0.006410 0.433121 4.457256 chr12-584 chr12 55102376 55102532 + 25.4 NA intron (NM_028133, intron 4 of 4) intron (NM_028133, intron 4 of 4) 23046 NM_028133 112407 Mm.133037 NM_028133 ENSMUSG00000035105 Egln3 2610021G09Rik|AI505553|AI648162|Phd3|SM-20 EGL nine homolog 3 (C. elegans) 0.006410 0.394904 2.663270 chr7-525 chr7 112181899 112182055 + 25.4 NA Intergenic Intergenic -36909 NM_020606 57342 Mm.143763 NM_020606 ENSMUSG00000030770 Parva 2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin parvin, alpha 0.025641 0.439490 2.675469 chr14-277 chr14 75908142 75908298 + 25.4 NA intron (NM_172813, intron 1 of 18) intron (NM_172813, intron 1 of 18) 17250 NM_172813 239188 Mm.441158 NM_172813 ENSMUSG00000022012 Enox1 B230207J08|D230005D02Rik ecto-NOX disulfide-thiol exchanger 1 0.006410 0.452229 -4.177369 chr2-796 chr2 92830353 92830509 + 25.4 NA intron (NM_001177536, intron 1 of 6) intron (NM_001177536, intron 1 of 6) 16552 NM_001177536 100042784 Mm.442142 XM_001478808 ENSMUSG00000075028 Prdm11 8030443D09Rik|AA163972|Gm707 PR domain containing 11 0.032051 0.611465 4.855781 chr14-233 chr14 30623384 30623540 + 25.4 NA intron (NM_001024604, intron 1 of 27) intron (NM_001024604, intron 1 of 27) 35962 NM_001024604 105522 Mm.37660 NM_001024604 ENSMUSG00000014496 Ankrd28 AI465466|AI604979|E430019N21Rik|KIAA0379|mKIAA0379 ankyrin repeat domain 28 0.006410 0.394904 -3.895631 chr2-858 chr2 148584231 148584387 + 25.4 NA Intergenic Intergenic -17400 NM_009976 13010 Mm.4263 NM_009976 ENSMUSG00000027447 Cst3 CysC cystatin C 0.000000 0.388535 0.610530 chr9-695 chr9 84447291 84447447 + 25.4 NA Intergenic Intergenic 676473 NM_001160378 212943 Mm.74610 XM_135029 ENSMUSG00000032265 Fam46a D930050G01Rik family with sequence similarity 46, member A 0.012821 0.426752 -2.368006 chr3-640 chr3 142361156 142361312 + 25.4 NA Intergenic Intergenic -28152 NM_019808 56376 Mm.117709 NM_001190852 ENSMUSG00000028273 Pdlim5 1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM PDZ and LIM domain 5 0.012821 0.471338 -1.466927 chr12-554 chr12 36666929 36667085 + 25.4 NA promoter-TSS (NM_025840) promoter-TSS (NM_025840) 84 NM_025840 66912 Mm.288669 NM_025840 ENSMUSG00000020547 Bzw2 1110001I24Rik|Bdm2|HSPC028|MGC7203 basic leucine zipper and W2 domains 2 0.070513 0.630573 -2.105385 chr9-760 chr9 120981203 120981359 + 25.4 NA intron (NM_177589, intron 30 of 36) intron (NM_177589, intron 30 of 36) 144589 NM_177589 209012 Mm.371804 XM_001479566 ENSMUSG00000040936 Ulk4 4932415A06Rik|A730098P15 unc-51-like kinase 4 (C. elegans) 0.006410 0.299363 -4.653852 chr9-633 chr9 57486444 57486600 + 25.4 NA intron (NM_009992, intron 1 of 6) intron (NM_009992, intron 1 of 6) 458 NM_009992 13076 Mm.14089 NM_001136059 ENSMUSG00000032315 Cyp1a1 AHH|AHRR|CP11|Cyp1a2|P450-1 cytochrome P450, family 1, subfamily a, polypeptide 1 0.000000 0.445860 2.774508 chr2-654 chr2 5715697 5715853 + 25.4 NA intron (NM_133837, intron 10 of 12) intron (NM_133837, intron 10 of 12) 46457 NM_133837 98828 Mm.181490 NM_133837 ENSMUSG00000039128 Cdc123 AA959893|G431001I09Rik cell division cycle 123 homolog (S. cerevisiae) 0.000000 0.382166 0.934684 chr4-646 chr4 46604521 46604543 + 25.4 NA intron (NM_001164804, intron 1 of 11) intron (NM_001164804, intron 1 of 11) -16992 NM_178893 107684 Mm.416311 NM_001164804 ENSMUSG00000028337 Coro2a AI563590|IR10 coronin, actin binding protein 2A 0.000000 0.173913 -7.169781 chr18-277 chr18 4978721 4978877 + 25.4 NA Intergenic Intergenic -67787 NM_153153 225115 Mm.136791 NM_153153 ENSMUSG00000024236 Svil AU024053|B430302E16Rik supervillin 0.012821 0.420382 -1.687772 chr5-995 chr5 138400736 138400892 + 25.4 NA promoter-TSS (NM_021392) promoter-TSS (NM_021392) 836 NM_008568 17220 Mm.378965 NM_008568 ENSMUSG00000029730 Mcm7 AI747533|Mcmd7|mCDC47 minichromosome maintenance deficient 7 (S. cerevisiae) 0.070513 0.643312 -6.062982 chr4-613 chr4 8892947 8893103 + 25.4 NA Intergenic Intergenic 274958 NM_001081417 320790 Mm.138792 NM_001081417 ENSMUSG00000041235 Chd7 A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|Lda|Mt|Obt|Todo|WBE1|Whi chromodomain helicase DNA binding protein 7 0.012821 0.528662 -4.925023 chr19-269 chr19 60520620 60520776 + 25.4 NA TTS (NM_201615) TTS (NM_201615) 2269 NM_201615 226278 Mm.377241 NM_201615 ENSMUSG00000045052 Prlhr Gm339|Gpr10|Gr3|Prrpr prolactin releasing hormone receptor 0.000000 0.445860 2.707589 chr6-614 chr6 108625793 108625949 + 25.4 NA promoter-TSS (NM_011498) promoter-TSS (NM_011498) -534 NM_011498 20893 Mm.2436 NM_011498 ENSMUSG00000030103 Bhlhe40 Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14 basic helix-loop-helix family, member e40 0.064103 0.649682 -3.925148 chr1-814 chr1 13645601 13645757 + 25.4 NA promoter-TSS (NM_145381) promoter-TSS (NM_145381) 44 NM_145381 212442 Mm.89572 NM_145381 ENSMUSG00000025937 Lactb2 Cgi-83|E430032H21Rik|MGC7674 lactamase, beta 2 0.102564 0.662420 0.470370 chr18-346 chr18 56832638 56832794 + 25.4 NA promoter-TSS (NM_010721) promoter-TSS (NM_010721) -465 NM_010721 16906 Mm.4105 NM_010721 ENSMUSG00000024590 Lmnb1 - lamin B1 0.089744 0.662420 -3.778296 chr13-398 chr13 43915432 43915588 + 25.4 NA Intergenic Intergenic 119432 NM_009856 12522 Mm.57175 NM_009856 ENSMUSG00000015396 Cd83 MGC130312|MGC130313 CD83 antigen 0.006410 0.509554 1.784676 chr5-803 chr5 49438818 49438974 + 25.4 NA Intergenic Intergenic -261091 NM_030265 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 0.000000 0.471338 -6.706950 chr7-567 chr7 130021307 130021463 + 25.4 NA intron (NM_201601, intron 2 of 15) intron (NM_201601, intron 2 of 15) 36571 NM_010207 14183 Mm.16340 NM_010207 ENSMUSG00000030849 Fgfr2 AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFRTr|MGC102519|svs fibroblast growth factor receptor 2 0.012821 0.477707 -3.755270 chr16-377 chr16 90900423 90900579 + 25.4 NA promoter-TSS (NM_001045515) promoter-TSS (NM_001045515) -334 NM_001164483 104015 Mm.187079 XM_001481287 ENSMUSG00000022973 Synj1 A930006D20Rik|AA675315|mKIAA0910 synaptojanin 1 0.064103 0.630573 -2.339369 chr1-1088 chr1 166178925 166179081 + 25.4 NA intron (NM_178071, intron 6 of 9) intron (NM_178071, intron 6 of 9) 34654 NM_178071 171567 Mm.219428 NM_138314 ENSMUSG00000026575 Nme7 D530024H21Rik|Nm23-M7|Nm23-r7 non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase) 0.012821 0.528662 2.774508 chr16-289 chr16 4335716 4335872 + 25.4 NA promoter-TSS (NM_009624) promoter-TSS (NM_009624) -979 NM_009624 11515 Mm.439750 NM_009624 ENSMUSG00000005580 Adcy9 ACtp10|AW125421|D16Wsu65e|mKIAA0520 adenylate cyclase 9 0.198718 0.847134 -9.674104 chr4-825 chr4 138211072 138211228 + 25.4 NA Intergenic MIR|SINE|MIR -25127 NM_028453 73162 Mm.307701 XM_001477728 ENSMUSG00000041161 Otud3 3110030K17Rik OTU domain containing 3 0.006410 0.407643 -3.775120 chr17-545 chr17 78046601 78046757 + 25.4 NA Intergenic Intergenic -58626 NM_015800 50766 Mm.311912 NM_015800 ENSMUSG00000024074 Crim1 AU015004 cysteine rich transmembrane BMP regulator 1 (chordin like) 0.006410 0.356688 -4.912414 chr14-254 chr14 53640727 53640883 + 25.4 NA exon (NM_023190, exon 1 of 19) exon (NM_023190, exon 1 of 19) 331 NM_001085473 56215 Mm.297078 NM_001085472 ENSMUSG00000022185 Acin1 2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670 apoptotic chromatin condensation inducer 1 0.096154 0.636943 -3.736045 chr11-877 chr11 107559337 107559493 + 25.4 NA intron (NM_019431, intron 1 of 3) intron (NM_019431, intron 1 of 3) -26849 NM_007582 12299 Mm.57093 NM_007582 ENSMUSG00000020722 Cacng1 MGC117703 calcium channel, voltage-dependent, gamma subunit 1 0.000000 0.560510 -4.402393 chr11-651 chr11 4604331 4604487 + 25.4 NA promoter-TSS (NM_026015) promoter-TSS (NM_026015) -62 NM_197979 66152 Mm.269736 NM_197979 ENSMUSG00000059534 Uqcr10 1110020P15Rik|AA960494|Ucrc ubiquinol-cytochrome c reductase, complex III subunit X 0.038462 0.420382 2.128817 chr17-494 chr17 43274751 43274907 + 25.4 NA intron (NM_207649, intron 1 of 4) intron (NM_207649, intron 1 of 4) 9924 NM_207649 53901 Mm.251242 NM_030598 ENSMUSG00000039601 Rcan2 Csp2|Dscr1l1|MCIP2|ZAKI-4 regulator of calcineurin 2 0.006410 0.414013 -3.310827 chr11-916 chr11 118565771 118565927 + 25.4 NA intron (NM_001024931, intron 2 of 14) intron (NM_001024931, intron 2 of 14) 159813 NM_001024931 52897 Mm.341103 NM_001024931 ENSMUSG00000025576 D11Bwg0517e Fox-3|Hrnbp3|NeuN DNA segment, Chr 11, Brigham & Women's Genetics 0517 expressed 0.006410 0.503185 -0.095615 chr4-758 chr4 108709814 108709970 + 25.4 NA Intergenic (CAG)n|Simple_repeat|Simple_repeat -9688 NM_133885 100273 Mm.366315 NM_001134791 ENSMUSG00000028559 Osbpl9 2600011I06Rik|AU015843|MGC30367|MGC38458|Orp-9 oxysterol binding protein-like 9 0.025641 0.541401 -9.462948 chr5-788 chr5 36984227 36984383 + 25.4 NA promoter-TSS (NM_001081232) promoter-TSS (NM_001081232) -87 NM_001081232 320661 Mm.478818 XM_001474408 ENSMUSG00000029190 D5Ertd579e 9030221A05Rik|A930018H20Rik|Kiaa0232|mKIAA0232 DNA segment, Chr 5, ERATO Doi 579, expressed 0.134615 0.738854 -4.273515 chr2-835 chr2 125843541 125843697 + 25.4 NA promoter-TSS (NM_026981) promoter-TSS (NM_026981) 38 NM_026981 69185 Mm.29019 NM_026981 ENSMUSG00000023330 Dtwd1 1810033A06Rik DTW domain containing 1 0.134615 0.751592 -9.772429 chr2-740 chr2 58592098 58592254 + 25.4 NA intron (NM_029692, intron 4 of 6) intron (NM_029692, intron 4 of 6) 21606 NM_029692 76654 Mm.437094 NM_029692 ENSMUSG00000026839 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 0.006410 0.420382 -2.294811 chr9-759 chr9 120915881 120916037 + 25.4 NA intron (NM_177589, intron 34 of 36) intron (NM_177589, intron 34 of 36) 133684 NM_001165902 12387 Mm.291928 NM_001165902 ENSMUSG00000006932 Ctnnb1 Catnb|Mesc catenin (cadherin associated protein), beta 1 0.012821 0.560510 0.606654 chr10-503 chr10 76482496 76482652 + 25.4 NA intron (NM_031196, intron 2 of 5) intron (NM_031196, intron 2 of 5) 5600 NM_031196 20509 Mm.265060 NM_031196 ENSMUSG00000001436 Slc19a1 AI323572|RFC|RFC-1|RFC1 solute carrier family 19 (sodium/hydrogen exchanger), member 1 0.012821 0.535032 -0.172614 chr15-433 chr15 97995808 97995964 + 25.4 NA promoter-TSS (NM_177716) promoter-TSS (NM_177716) 47 NM_177716 239650 Mm.54140 NM_177716 ENSMUSG00000029875 AI836003 5630400A08 expressed sequence AI836003 0.128205 0.713376 -5.317064 chr11-687 chr11 25230870 25231026 + 25.4 NA Intergenic Intergenic -600226 NR_033491 100038617 Mm.387376 NR_033491 Gm10466 ENSMUSG00000073103 predicted gene 10466 0.012821 0.369427 -3.683180 chr4-781 chr4 124786123 124786279 + 25.4 NA Intergenic Intergenic -156016 NM_153159 230738 Mm.402 NM_153159 ENSMUSG00000042677 Zc3h12a BC036563|MCPIP|MGC41320|Mcpip1 zinc finger CCCH type containing 12A 0.000000 0.605096 -3.803686 chr10-600 chr10 128341533 128341689 + 25.4 NA intron (NM_008398, intron 1 of 24) intron (NM_008398, intron 1 of 24) 4850 NM_008398 16404 Mm.179747 NM_008398 ENSMUSG00000025348 Itga7 [a]7|alpha7 integrin alpha 7 0.012821 0.611465 -4.767300 chr2-936 chr2 181521937 181522093 + 25.4 NA promoter-TSS (NM_001164597) promoter-TSS (NM_001164597) -147 NM_001164597 269401 Mm.386888 XM_977462 ENSMUSG00000000823 Znf512b Gm632 zinc finger protein 512B 0.166667 0.840764 -6.298394 chr4-748 chr4 106406890 106407046 + 25.4 NA Intergenic Intergenic -2433 NM_198438 72475 Mm.474861 NM_023672 ENSMUSG00000061887 Ssbp3 2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1 single-stranded DNA binding protein 3 0.000000 0.509554 -5.197163 chr4-866 chr4 151189408 151189564 + 25.4 NA intron (NM_001081376, intron 1 of 41) intron (NM_001081376, intron 1 of 41) 7036 NM_001081376 269610 Mm.40192 NM_001081376 ENSMUSG00000005045 Chd5 4930532L22Rik|AW060752|B230399N07Rik chromodomain helicase DNA binding protein 5 0.012821 0.573248 -2.541862 chr10-588 chr10 125755112 125755268 + 25.4 NA Intergenic Intergenic 386023 NM_177152 320398 Mm.275586 NM_177152 ENSMUSG00000020105 Lrig3 9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016 leucine-rich repeats and immunoglobulin-like domains 3 0.019231 0.433121 -6.003899 chrX-106 chrX 109152515 109152671 + 25.4 NA Intergenic Intergenic 149866 NM_018818 12662 Mm.257316 NM_018818 ENSMUSG00000025531 Chm Rep-1 choroidermia 0.006410 0.414013 -3.997906 chr12-668 chr12 87872401 87872557 + 25.4 NA TTS (NM_001080943) TTS (NM_001080943) 5300 NM_001080943 238331 Mm.185890 NM_001080943 ENSMUSG00000048483 Zdhhc22 Gm262|MGC157624 zinc finger, DHHC-type containing 22 0.025641 0.547771 -5.798721 chr3-606 chr3 123259879 123260035 + 25.4 NA intron (NM_027135, intron 1 of 22) intron (NM_027135, intron 1 of 22) 440 NM_027135 69608 Mm.29293 NM_027135 ENSMUSG00000039234 Sec24d 2310020L09Rik|Gm1349 Sec24 related gene family, member D (S. cerevisiae) 0.038462 0.592357 2.388819 chr11-895 chr11 112824911 112825067 + 25.4 NA Intergenic Intergenic 192939 NR_015556 72386 Mm.266961 XM_001472535 2610035D17Rik - RIKEN cDNA 2610035D17 gene 0.006410 0.484076 -5.588234 chr1-970 chr1 87733360 87733516 + 25.4 NA intron (NM_022417, intron 1 of 5) intron (NM_022417, intron 1 of 5) 7758 NM_022417 64294 Mm.29870 NM_022417 ENSMUSG00000026223 Itm2c 3110038L02Rik|AU041202|BRI3|E25|E25C|ITM3|R75508 integral membrane protein 2C 0.019231 0.547771 0.122727 chr4-773 chr4 119629258 119629414 + 25.4 NA intron (NM_010657, intron 7 of 8) intron (NM_010657, intron 7 of 8) -29722 NM_007902 13615 Mm.284855 NM_007902 ENSMUSG00000028635 Edn2 VIC endothelin 2 0.032051 0.598726 -3.135248 chr10-465 chr10 41206307 41206463 + 25.4 NA Intergenic Charlie7|DNA|MER1_type -1529 NM_016898 53599 Mm.269815 NM_016898 ENSMUSG00000019818 Cd164 A115|A24|AA589639|AW540279|MGC-24|MSSP CD164 antigen 0.006410 0.420382 3.769503 chr13-494 chr13 113240748 113240904 + 25.4 NA Intergenic Intergenic -168502 NM_029898 77318 Mm.159895 NM_001168403 ENSMUSG00000049985 Ankrd55 C030011J08Rik ankyrin repeat domain 55 0.025641 0.547771 -1.173923 chr17-475 chr17 33566221 33566377 + 25.4 NA promoter-TSS (NM_011296) promoter-TSS (NM_011296) -36 NM_172620 224705 Mm.480557 NM_172620 ENSMUSG00000024319 Vps52 ARE1|D130068D18|D430041K17Rik|Sacm2l vacuolar protein sorting 52 (yeast) 0.076923 0.528662 -1.015024 chr9-675 chr9 70692790 70692946 + 25.4 NA intron (NM_008280, intron 1 of 8) intron (NM_008280, intron 1 of 8) 41157 NM_008280 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl lipase, hepatic 0.012821 0.490446 -7.605771 chr6-462 chr6 21954065 21954221 + 25.4 NA intron (NM_001081351, intron 1 of 21) intron (NM_001081351, intron 1 of 21) 18233 NM_001081351 214642 Mm.221404 NM_001081351 ENSMUSG00000062980 A430107O13Rik 6720481P07|AI552584 RIKEN cDNA A430107O13 gene 0.012821 0.401274 -4.651859 chr1-1100 chr1 167839941 167840097 + 25.4 NA promoter-TSS (NM_011137) promoter-TSS (NM_011137) -710 NM_011137 18986 Mm.245261 NM_011137 ENSMUSG00000026565 Pou2f1 2810482H01Rik|Oct-1|Oct1|Otf-1|Otf1 POU domain, class 2, transcription factor 1 0.128205 0.700637 -2.395482 chr6-560 chr6 86029426 86029582 + 25.4 NA Intergenic Intergenic -14213 NM_013458 11519 Mm.104155 NM_013458 ENSMUSG00000030000 Add2 2900072M03Rik adducin 2 (beta) 0.006410 0.439490 -0.882679 chr2-678 chr2 25111157 25111313 + 25.4 NA promoter-TSS (NM_146117) promoter-TSS (NM_146117) -684 NM_146117 227618 Mm.275228 NM_146117 ENSMUSG00000026961 Lrrc26 MGC37548|MGC37592|MGC6965|RP23-132N23.19 leucine rich repeat containing 26 0.000000 0.496815 0.579066 chr6-633 chr6 115507258 115507414 + 25.4 NA Intergenic Intergenic -2986 NM_199033 381802 Mm.291208 NM_199033 ENSMUSG00000042389 Tsen2 AU067695|MGC69703 tRNA splicing endonuclease 2 homolog (S. cerevisiae) 0.012821 0.477707 -9.743494 chr9-724 chr9 106211932 106212088 + 25.4 NA Intergenic Intergenic -14722 NM_153459 235584 Mm.275584 NM_153459 ENSMUSG00000053716 Dusp7 AU015694|Mkpx|Pyst2 dual specificity phosphatase 7 0.025641 0.547771 0.462786 chr1-1127 chr1 183372980 183373136 + 25.4 NA Intergenic B4A|SINE|B4 -24932 NM_207280 403180 Mm.220754 XM_619714 ENSMUSG00000050625 Ccdc121 6530421E24Rik|Gm755 coiled-coil domain containing 121 0.019231 0.420382 -4.586037 chr1-846 chr1 36502046 36502202 + 25.4 NA intron (NM_001126047, intron 1 of 14) intron (NM_001126047, intron 1 of 14) 803 NM_001126047 20353 Mm.29558 XM_898566 ENSMUSG00000026121 Sema4c AI426163|Semacl1|Semaf|Semai|mKIAA1739 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 0.096154 0.694268 -3.090364 chr17-456 chr17 28979308 28979464 + 25.4 NA intron (NM_026845, intron 2 of 3) intron (NM_026845, intron 2 of 3) 11597 NM_026845 68816 Mm.328928 NM_026845 ENSMUSG00000024007 Ppil1 1110060O10Rik|AI327391|Cypl1 peptidylprolyl isomerase (cyclophilin)-like 1 0.012821 0.490446 -0.292662 chr2-774 chr2 75423300 75423456 + 25.4 NA Intergenic Intergenic -36719 NM_146130 229279 Mm.379375 NM_053263 ENSMUSG00000059005 Hnrnpa3 2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3|MGC101940|MGC37309 heterogeneous nuclear ribonucleoprotein A3 0.025641 0.452229 -6.737555 chr17-544 chr17 75449415 75449571 + 25.4 NA intron (NM_133747, intron 3 of 7) intron (NM_133747, intron 3 of 7) 7513 NM_133747 72722 Mm.476890 NM_133747 ENSMUSG00000002017 Fam98a 2810405J04Rik|AL024114 family with sequence similarity 98, member A 0.012821 0.541401 -1.574540 chr5-888 chr5 106698702 106698858 + 25.4 NA promoter-TSS (NM_001005477) promoter-TSS (NM_001005477) -312 NM_001005477 104382 Mm.271593 NM_001005477 ENSMUSG00000034384 Barhl2 E130309B19Rik|MBH1|MGC90874 BarH-like 2 (Drosophila) 0.179487 0.796178 -5.479102 chr3-564 chr3 96724686 96724842 + 25.4 NA intron (NM_001162387, intron 3 of 4) intron (NM_001162387, intron 3 of 4) 3513 NM_001162388 18632 Mm.20901 NM_001162387 ENSMUSG00000028102 Pex11b PEX11beta|Pex11pbeta peroxisomal biogenesis factor 11 beta 0.006410 0.528662 1.020243 chr5-936 chr5 119246176 119246332 + 25.4 NA Intergenic Intergenic 424506 NM_172424 76199 Mm.206238 NM_172424 ENSMUSG00000018076 Med13l 2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025 mediator complex subunit 13-like 0.025641 0.605096 -4.839192 chr18-315 chr18 35688032 35688188 + 25.4 NA promoter-TSS (NM_010771) promoter-TSS (NM_010771) -21 NM_010771 17184 Mm.215034 NM_010771 ENSMUSG00000037236 Matr3 1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723 matrin 3 0.128205 0.700637 1.078252 chr6-595 chr6 95145400 95145556 + 25.4 NA Intergenic Intergenic 62110 NM_001008785 243574 Mm.333275 NM_001008785 ENSMUSG00000030031 Kbtbd8 AU040152|MGC91215|SSEC-51|SSEC51|Takrp|mKIAA1842 kelch repeat and BTB (POZ) domain containing 8 0.000000 0.363057 -3.564353 chr10-539 chr10 87727092 87727248 + 25.4 NA Intergenic Intergenic 59704 NM_027878 71712 Mm.35450 NM_027878 ENSMUSG00000020057 Dram1 1200002N14Rik|Dram DNA-damage regulated autophagy modulator 1 0.025641 0.433121 -2.445215 chr11-761 chr11 70339600 70339756 + 25.4 NA Intergenic Intergenic -1873 NM_008946 19175 Mm.98 XM_001471617 ENSMUSG00000018286 Psmb6 Lmp19|Mpnd proteasome (prosome, macropain) subunit, beta type 6 0.019231 0.490446 -3.311791 chr17-409 chr17 11864817 11864973 + 25.4 NA intron (NM_016694, intron 10 of 11) intron (NM_016694, intron 10 of 11) -97746 NM_026644 68262 Mm.258300 NM_026644 ENSMUSG00000023827 Agpat4 1500003P24Rik 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 0.006410 0.471338 -5.574561 chr18-331 chr18 43884889 43885045 + 25.4 NA Intergenic Intergenic -4690 NM_054038 117158 Mm.210437 NM_054038 ENSMUSG00000038791 Scgb3a2 LuLeu1|Pnsp1|UGRP1|Utgrp1 secretoglobin, family 3A, member 2 0.006410 0.375796 -5.770833 chr4-795 chr4 129479264 129479420 + 25.4 NA Intergenic Intergenic -8125 NM_173071 230775 Mm.262241 NM_173071 ENSMUSG00000028782 Bai2 - brain-specific angiogenesis inhibitor 2 0.012821 0.484076 -0.832962 chr15-424 chr15 93262511 93262667 + 25.4 NA intron (NM_001083114, intron 3 of 7) intron (NM_001083114, intron 3 of 7) 36060 NM_146062 223828 Mm.74208 NM_001083114 ENSMUSG00000036167 Pphln1 1110063K05Rik|1600022A19Rik|CR|HSPC206|HSPC232|MGC27795 periphilin 1 0.000000 0.337580 -8.450799 chr13-356 chr13 6890830 6890986 + 25.4 NA Intergenic Intergenic -242938 NM_019703 56421 Mm.273874 NM_019703 ENSMUSG00000021196 Pfkp 1200015H23Rik|9330125N24Rik|PFK-C phosphofructokinase, platelet 0.019231 0.464968 6.049659 chrX-107 chrX 109549754 109549910 + 25.4 NA intron (NM_001142570, intron 1 of 11) intron (NM_001142570, intron 1 of 11) 134633 NM_001142570 93837 Mm.79760 NM_001142570 ENSMUSG00000025592 Dach2 9430028N04Rik dachshund 2 (Drosophila) 0.012821 0.343949 1.179223 chr6-642 chr6 120241110 120241266 + 25.4 NA intron (NM_198884, intron 1 of 19) intron (NM_198884, intron 1 of 19) 18990 NM_198884 330406 Mm.321840 NM_198884 ENSMUSG00000041372 B4galnt3 AB114826|B4GalNAcT3|C330047A21 beta-1,4-N-acetyl-galactosaminyl transferase 3 0.006410 0.528662 -5.506390 chr15-366 chr15 58424920 58425076 + 25.4 NA Intergenic Intergenic 179448 NM_145959 210998 Mm.3224 NM_145959 ENSMUSG00000037119 D15Ertd621e AV220772|BC033609|MGC40987|SKIN|mKIAA0493 DNA segment, Chr 15, ERATO Doi 621, expressed 0.019231 0.541401 1.306082 chr18-387 chr18 84221614 84221770 + 25.4 NA promoter-TSS (NM_146090) promoter-TSS (NM_146090) -658 NM_146090 225791 Mm.440718 NM_146090 ENSMUSG00000049090 Zadh2 C530046K17Rik|MGC32469 zinc binding alcohol dehydrogenase, domain containing 2 0.147436 0.802548 -0.383216 chr2-845 chr2 132446376 132446532 + 25.4 NA Intergenic Intergenic -26264 NM_007694 12653 Mm.255241 NM_007694 ENSMUSG00000027350 Chgb Scg-1 chromogranin B 0.012821 0.350318 -3.179566 chr8-441 chr8 11660631 11660787 + 25.4 NA intron (NM_024271, intron 4 of 5) intron (NM_024271, intron 4 of 5) 18013 NM_024271 76413 Mm.440041 NM_024271 ENSMUSG00000031509 1700016D06Rik - RIKEN cDNA 1700016D06 gene 0.012821 0.496815 1.858088 chr6-491 chr6 39271433 39271589 + 25.4 NA intron (NM_028123, intron 13 of 14) intron (NM_028123, intron 13 of 14) 35803 NM_028123 72144 Mm.277527 NM_028123 ENSMUSG00000029924 Slc37a3 2610507O21Rik|AU044904|MGC106297 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 0.000000 0.439490 -0.703776 chr1-945 chr1 78491426 78491582 + 25.4 NA Intergenic Intergenic -45344 NM_001033606 74205 Mm.276016 NM_001033606 ENSMUSG00000032883 Acsl3 2610510B12Rik|Acs3|C85929|Facl3|Pro2194 acyl-CoA synthetase long-chain family member 3 0.000000 0.490446 -8.722531 chr8-603 chr8 127089036 127089192 + 25.4 NA Intergenic Intergenic -28369 NM_139272 108148 Mm.33808 NM_139272 ENSMUSG00000031826 Galnt2 AI480629 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 0.019231 0.471338 -4.791725 chr5-743 chr5 8628460 8628616 + 25.4 NA exon (NM_198620, exon 1 of 10) exon (NM_198620, exon 1 of 10) 420 NM_198620 242819 Mm.332192 NM_198620 ENSMUSG00000040570 Rundc3b Gm440|MGC68340 RUN domain containing 3B 0.128205 0.777070 2.494664 chr1-1117 chr1 176502000 176502156 + 25.4 NA intron (NM_019445, intron 7 of 17) intron (NM_019445, intron 7 of 17) 163579 NM_019445 54418 Mm.330620 NM_019445 ENSMUSG00000028354 Fmn2 AU024104 formin 2 0.000000 0.305732 -2.866332 chr12-585 chr12 55256411 55256567 + 25.4 NA Intergenic Intergenic 56455 NR_033689 665239 XM_975549 Gm7550 EG665239|Gm666 predicted gene 7550 0.012821 0.414013 0.423607 chr4-722 chr4 96470132 96470288 + 25.4 NA Intergenic Intergenic -193032 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 OTTMUSG00000008003 predicted gene 12695 0.012821 0.420382 -7.126412 chr13-424 chr13 56436880 56437036 + 25.4 NA Intergenic MLT1C|LTR|MaLR -11018 NM_177809 328258 Mm.10034 NM_177809 ENSMUSG00000021509 Slc25a48 AU042651|E230025K15|MGC130189|MGC130190 solute carrier family 25, member 48 0.006410 0.464968 2.029446 chr10-476 chr10 60324127 60324283 + 25.4 NA intron (NR_033616, intron 2 of 2) intron (NR_033616, intron 2 of 2) 9284 NR_033616 73616 Mm.159038 NR_033616 Pldi 1700125F08Rik|Poldi polymorphic derived intron containing 0.006410 0.579618 2.966339 chr6-641 chr6 119868097 119868253 + 25.4 NA promoter-TSS (NM_001166383) promoter-TSS (NM_001166383) -141 NM_001166382 19365 Mm.149 NM_001166381 ENSMUSG00000030166 Rad52 Rad52yh RAD52 homolog (S. cerevisiae) 0.102564 0.687898 1.269740 chr18-344-Dup1 chr18 56064992 56064998 + 25.4 NA Intergenic GSAT_MM|Satellite|Satellite -492505 NM_026240 107022 Mm.24356 NM_026240 ENSMUSG00000001700 Gramd3 9030613F08Rik|9130427A09Rik|AW061306|NS3TP2 GRAM domain containing 3 0.000000 0.285714 -10000000000.000000 chr12-678 chr12 93258031 93258187 + 25.4 NA Intergenic Intergenic -1003395 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.006410 0.433121 -4.177370 chr10-525 chr10 82777431 82777587 + 25.4 NA Intergenic Intergenic -9893 NM_177388 338365 Mm.67073 NM_177388 ENSMUSG00000034591 Slc41a2 A230035L05Rik|SLC41A1-L1 solute carrier family 41, member 2 0.012821 0.484076 -1.338742 chr4-804 chr4 132308268 132308424 + 25.4 NA intron (NM_146155, intron 2 of 6) intron (NM_146155, intron 2 of 6) 24765 NM_146155 230793 Mm.421391 NM_146155 ENSMUSG00000037692 Ahdc1 D030015G18Rik|MGC29331 AT hook, DNA binding motif, containing 1 0.000000 0.420382 -6.731860 chr12-519 chr12 3368810 3368966 + 25.4 NA intron (NM_008445, intron 1 of 7) intron (NM_008445, intron 1 of 7) 3757 NM_008445 16570 Mm.415417 NM_008445 ENSMUSG00000020668 Kif3c KIAA4058|mKIAA4058 kinesin family member 3C 0.006410 0.535032 -0.731703 chr12-536 chr12 25400459 25400615 + 25.4 NA Intergenic Intergenic -20140 NM_026037 67216 Mm.167671 NM_001083341 ENSMUSG00000020646 Mboat2 2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2 membrane bound O-acyltransferase domain containing 2 0.006410 0.509554 -2.774580 chrX-120 chrX 145819070 145819226 + 25.4 NA Intergenic Intergenic -19282 NM_001164683 382245 Mm.277309 XM_001474106 Tmem29 2700081K05Rik|6330540D07Rik|CXorf44-like transmembrane protein 29 0.051282 0.496815 1.702217 chr1-860 chr1 39700103 39700259 + 25.4 NA Intergenic Intergenic -34646 NM_001145660 619289 Mm.334107 XM_001478116 ENSMUSG00000057173 Rfx8 4933400N17Rik regulatory factor X 8 0.012821 0.503185 -1.996658 chr1-936 chr1 75183490 75183646 + 25.4 NA Intergenic MTE2b|LTR|MaLR 16597 NM_016878 13437 Mm.24680 NM_001110831 ENSMUSG00000026209 Dnpep AA407814 aspartyl aminopeptidase 0.006410 0.420382 -6.826397 chr15-402 chr15 81934046 81934202 + 25.4 NA intron (NM_028897, intron 20 of 30) intron (NM_028897, intron 20 of 30) -21052 NM_172428 76457 Mm.440373 NM_172428 ENSMUSG00000068114 Ccdc134 2310042L06Rik|AW208859 coiled-coil domain containing 134 0.038462 0.522293 -5.826497 chr15-383 chr15 72600472 72600628 + 25.4 NA intron (NM_029640, intron 16 of 21) intron (NM_029640, intron 16 of 21) 37030 NR_002864 353342 Mm.440245 NR_002864 Peg13 - paternally expressed 13 0.006410 0.528662 0.197801 chr13-467 chr13 99678789 99678945 + 25.4 NA Intergenic Intergenic 58700 NM_026685 68344 Mm.28766 NM_026685 ENSMUSG00000046082 Tmem174 0610009B10Rik|AA986094 transmembrane protein 174 0.019231 0.464968 1.300714 chr5-1013 chr5 141836462 141836618 + 25.4 NA intron (NM_177879, intron 2 of 44) intron (NM_177879, intron 2 of 44) 342533 NM_177879 330222 Mm.406697 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik sidekick homolog 1 (chicken) 0.006410 0.433121 -6.180578 chr15-327 chr15 28779533 28779689 + 25.4 NA Intergenic Intergenic 631257 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnahc5 AU022615|Dnah5|KIAA1603|Mdnah5|mKIAA1603 dynein, axonemal, heavy chain 5 0.019231 0.433121 -6.469552 chr3-616 chr3 129208974 129209130 + 25.4 NA intron (NM_001042504, intron 3 of 3) intron (NM_001042504, intron 3 of 3) 3094 NM_001042502 18741 Mm.246804 NM_001042502 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1a|Brx1b|Munc30|Otlx2|Pitx2a|Pitx2b|Pitx2c|Pitx2cbeta|Ptx2|Rieg|solurshin paired-like homeodomain transcription factor 2 0.051282 0.535032 1.950970 chr6-570 chr6 89429537 89429693 + 25.4 NA intron (NM_001167736, intron 4 of 6) intron (NM_001167736, intron 4 of 6) -101361 NM_008881 18844 Mm.3789 NM_008881 ENSMUSG00000030084 Plxna1 2600013D04Rik|KIAA4053|NOV|Plxn1|mKIAA4053 plexin A1 0.006410 0.324841 -7.843493 chr5-853 chr5 89730461 89730617 + 25.4 NA Intergenic PB1D10|SINE|Alu 19602 NM_001098476 231413 Mm.472981 NM_001098476 ENSMUSG00000044221 Grsf1 B130010H02|BB232551|C80280|D5Wsu31e G-rich RNA sequence binding factor 1 0.012821 0.547771 -3.301542 chr4-686 chr4 81186928 81187084 + 25.4 NA Intergenic Intergenic -272970 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.000000 0.407643 2.380868 chrX-98 chrX 81089015 81089171 + 25.4 NA intron (NM_007868, intron 59 of 78) intron (NM_007868, intron 59 of 78) -413302 NM_028046 71996 Mm.20201 XM_135938 ENSMUSG00000035491 1600014K23Rik AI324104 RIKEN cDNA 1600014K23 gene 0.006410 0.382166 -2.821774 chr18-280 chr18 5594511 5594667 + 25.4 NA intron (NM_011546, intron 1 of 7) intron (NM_011546, intron 1 of 7) -2154 NR_033552 791318 Mm.84339 NR_033552 Gm10125 ENSMUSG00000063087 predicted gene 10125 0.012821 0.382166 -6.260934 chr5-972 chr5 131882279 131882435 + 25.4 NA intron (NM_177047, intron 5 of 18) intron (NM_177047, intron 5 of 18) -290132 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.012821 0.452229 11.446793 chr1-1005 chr1 115866964 115867120 + 25.4 NA Intergenic MTE2b|LTR|MaLR -1645641 NM_001077425 636808 Mm.337385 NM_001077425 ENSMUSG00000070695 Cntnap5a Caspr5-1|EG636808 contactin associated protein-like 5A 0.000000 0.407643 -0.133637 chr12-521 chr12 8976670 8976826 + 25.4 NA intron (NM_010770, intron 1 of 7) intron (NM_010770, intron 1 of 7) 2812 NM_010770 17182 Mm.42226 NM_010770 ENSMUSG00000020583 Matn3 AV009181 matrilin 3 0.000000 0.407643 -2.362709 chr4-754 chr4 108117908 108118064 + 25.4 NA promoter-TSS (NM_177045) promoter-TSS (NM_177045) 99 NM_177045 319965 Mm.151129 NM_177045 ENSMUSG00000028582 Cc2d1b A830039B04Rik coiled-coil and C2 domain containing 1B 0.134615 0.719745 0.234958 chr17-423 chr17 23593714 23593870 + 25.4 NA Intergenic Intergenic -1901 NM_020487 57256 Mm.386785 NM_020487 ENSMUSG00000024116 Prss21 1700023E12Rik|MGC151132|MGC151134|TESP5|mT4|testisin protease, serine, 21 0.000000 0.439490 -10.116326 chr5-817 chr5 64344946 64345102 + 25.4 NA Intergenic RMER6A|LTR|ERVK -27060 NM_025700 66681 Mm.2325 NM_025700 ENSMUSG00000029171 Pgm1 3230402E02Rik|Pgm-1|Pgm2 phosphoglucomutase 1 0.025641 0.490446 -1.540513 chr4-796 chr4 130146823 130146979 + 25.4 NA Intergenic Intergenic -38508 NM_010686 16792 Mm.271868 NM_010686 ENSMUSG00000028581 Laptm5 E3 lysosomal-associated protein transmembrane 5 0.032051 0.617834 -4.313395 chr11-713 chr11 52720341 52720497 + 25.4 NA intron (NM_177059, intron 3 of 15) intron (NM_177059, intron 3 of 15) 112291 NM_177059 320027 Mm.44518 NM_177059 ENSMUSG00000036264 Fstl4 B230374F23Rik|KIAA1061|SPIG1|mKIAA1061 follistatin-like 4 0.006410 0.356688 -5.067978 chr7-568 chr7 130175211 130175367 + 25.4 NA Intergenic RSINE1|SINE|B4 -117333 NM_201601 14183 Mm.16340 NM_010207 ENSMUSG00000030849 Fgfr2 AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFRTr|MGC102519|svs fibroblast growth factor receptor 2 0.025641 0.445860 -2.983104 chr8-542 chr8 80369484 80369640 + 25.4 NA intron (NM_030113, intron 1 of 22) intron (NM_030113, intron 1 of 22) -43565 NR_028125 70345 Mm.411813 NR_028125 0610038B21Rik - RIKEN cDNA 0610038B21 gene 0.025641 0.528662 0.232414 chr5-896 chr5 109707285 109707441 + 25.4 NA Intergenic Intergenic 47049 NM_001104628 384221 Mm.469879 NM_001104628 Vmn2r17 EG384221 vomeronasal 2, receptor 17 0.025641 0.522293 -1.839461 chr9-570 chr9 26442282 26442438 + 25.4 NA Intergenic Intergenic -58647 NM_029792 76898 Mm.218788 NM_029792 ENSMUSG00000045994 B3gat1 0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1|KIAA4235 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) 0.012821 0.490446 -1.699618 chr2-917 chr2 174537884 174538040 + 25.4 NA Intergenic B4A|SINE|B4 134251 NM_007903 13616 Mm.9478 NM_007903 ENSMUSG00000027524 Edn3 114-CH19|114CH19|ls|tmgc48 endothelin 3 0.019231 0.490446 -5.811092 chr9-679 chr9 72233507 72233663 + 25.4 NA Intergenic Intergenic -3510 NM_008613 17427 Mm.387671 NM_008613 ENSMUSG00000032221 Mns1 AW546487 meiosis-specific nuclear structural protein 1 0.025641 0.458599 -4.146584 chr17-513 chr17 47966705 47966861 + 25.4 NA Intergenic L3|LINE|CR1 46316 NM_152823 76589 Mm.311629 NM_152823 ENSMUSG00000043592 Unc5cl 2510009H09Rik|BB155270|Zud unc-5 homolog C (C. elegans)-like 0.012821 0.484076 -4.620699 chr7-546 chr7 120626230 120626386 + 25.4 NA Intergenic Intergenic -7723 NM_007908 13631 Mm.361795 NM_007908 ENSMUSG00000035064 Eef2k C86191|eEF-2K eukaryotic elongation factor-2 kinase 0.038462 0.515924 -6.033998 chr6-478 chr6 33688042 33688198 + 25.4 NA intron (NM_009148, intron 10 of 17) intron (NM_009148, intron 10 of 17) -271485 NM_028886 74354 Mm.127952 XM_133060 ENSMUSG00000056215 Lrguk 4921528H16Rik leucine-rich repeats and guanylate kinase domain containing 0.012821 0.394904 -2.128882 chr1-1080 chr1 160366575 160366731 + 25.4 NA intron (NM_007495, intron 8 of 22) intron (NM_007495, intron 8 of 22) 24352 NR_030441 735253 NR_030441 Mir488 Mirn488|mmu-mir-488 microRNA 488 0.012821 0.350318 1.156957 chr7-556 chr7 124132392 124132548 + 25.4 NA Intergenic Intergenic -840873 NM_001081329 210162 Mm.135397 NM_001081329 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 0.006410 0.369427 -6.210592 chr4-786 chr4 127106950 127107106 + 25.4 NA Intergenic L1ME1|LINE|L1 -246560 NM_010291 14622 Mm.26859 NM_010291 ENSMUSG00000042357 Gjb5 Cnx31.1|Cx31.1|Gjb-5 gap junction protein, beta 5 0.032051 0.490446 -3.307542 chr14-218 chr14 21664155 21664311 + 25.4 NA intron (NM_028275, intron 6 of 6) intron (NM_028275, intron 6 of 6) 218890 NR_033550 791307 Mm.364384 NR_033550 Gm10248 ENSMUSG00000068680 predicted gene 10248 0.006410 0.337580 -3.925578 chr14-238 chr14 31718081 31718237 + 25.4 NA intron (NM_178791, intron 3 of 7) intron (NM_178791, intron 3 of 7) 32312 NM_178791 320736 Mm.187910 NM_178791 ENSMUSG00000050666 E130203B14Rik - RIKEN cDNA E130203B14 gene 0.006410 0.522293 -6.929636 chr11-771 chr11 74699474 74699630 + 25.4 NA intron (NM_197943, intron 2 of 22) intron (NM_197943, intron 2 of 22) 13723 NM_197943 97761 Mm.245894 NM_197943 ENSMUSG00000038351 Sgsm2 D630003G22Rik|R74628|Rutbc1|mKIAA0397 small G protein signaling modulator 2 0.006410 0.509554 8.346785 chr8-567 chr8 119001861 119002017 + 25.4 NA Intergenic Intergenic -389052 NM_029297 75465 Mm.23114 NM_029297 ENSMUSG00000034467 Dynlrb2 1700009A04Rik|DNLC2B|Dncl2b dynein light chain roadblock-type 2 0.019231 0.528662 2.613551 chr9-557 chr9 21259155 21259311 + 25.4 NA intron (NM_010744, intron 3 of 3) intron (NM_010744, intron 3 of 3) 1355 NM_010744 17083 Mm.196618 NM_010744 ENSMUSG00000032180 Tmed1 Il1rl1l|Ly84l|St2l transmembrane emp24 domain containing 1 0.019231 0.503185 -3.879945 chr9-623 chr9 54614685 54614841 + 25.4 NA Intergenic Intergenic -47128 NM_022655 64602 Mm.208991 NM_022655 ENSMUSG00000032293 Ireb2 D9Ertd85e|DKFZp564D1164|Irp2 iron responsive element binding protein 2 0.032051 0.579618 -3.652937 chr17-449 chr17 28253112 28253268 + 25.4 NA Intergenic Intergenic -5259 NM_026290 67645 Mm.46170 NM_026290 ENSMUSG00000024223 4930511I11Rik AV041658 RIKEN cDNA 4930511I11 gene 0.012821 0.458599 2.057864 chrX-132 chrX 160349087 160349243 + 25.4 NA Intergenic Intergenic 24469 NM_175027 237211 Mm.336317 NM_001146081 ENSMUSG00000047757 Fancb BC022692|MGC31411 Fanconi anemia, complementation group B 0.000000 0.375796 -3.151978 chr9-726 chr9 106647230 106647253 + 25.4 NA promoter-TSS (NM_030730) promoter-TSS (NM_030730) 73 NM_030730 81000 Mm.246689 NM_030730 ENSMUSG00000040661 Rad54l2 Arip4|D130058C05|G630026H09Rik|Srisnf2l RAD54 like 2 (S. cerevisiae) 0.086957 0.708333 -19.457094 chr12-528 chr12 16926407 16926563 + 25.4 NA intron (NM_009072, intron 1 of 32) intron (NM_009072, intron 1 of 32) 6028 NM_009072 19878 Mm.276024 NM_009072 ENSMUSG00000020580 Rock2 B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619 Rho-associated coiled-coil containing protein kinase 2 0.006410 0.490446 -3.450498 chr5-1006 chr5 140762818 140762974 + 25.4 NA intron (NM_021528, intron 1 of 1) intron (NM_021528, intron 1 of 1) 4814 NM_021528 59031 Mm.28934 NM_021528 ENSMUSG00000036599 Chst12 AI595374|C4S-2|C4ST2 carbohydrate sulfotransferase 12 0.044872 0.566879 -2.070379 chr3-657 chr3 156855993 156856149 + 25.4 NA intron (NM_001039094, intron 2 of 6) intron (NM_001039094, intron 2 of 6) 358820 NM_177274 320840 Mm.317293 NM_001039094 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra|mKIAA3001 neuronal growth regulator 1 0.019231 0.484076 -1.805464 chr1-854 chr1 37656297 37656453 + 25.4 NA intron (NM_028096, intron 1 of 9) intron (NM_028096, intron 1 of 9) 7982 NM_028096 72097 Mm.142607 XM_001476698 ENSMUSG00000026090 2010300C02Rik - RIKEN cDNA 2010300C02 gene 0.012821 0.458599 3.325009 chr11-869 chr11 105565593 105565749 + 25.4 NA intron (NM_181071, intron 4 of 25) intron (NM_181071, intron 4 of 25) 159596 NM_181071 77097 Mm.22501 NM_181071 ENSMUSG00000053580 Tanc2 3526402J09Rik|5730590C14Rik tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 0.000000 0.452229 -2.877247 chr17-555 chr17 84441306 84441462 + 25.4 NA intron (NM_177606, intron 2 of 29) intron (NM_177606, intron 2 of 29) 21164 NM_177606 213556 Mm.215159 NM_177606 ENSMUSG00000040852 Plekhh2 AI256725|E030001K05|MGC159286|mKIAA2028 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 0.000000 0.445860 -5.957978 chr16-319 chr16 24824316 24824472 + 25.4 NA intron (NM_001145954, intron 5 of 7) intron (NM_001145954, intron 5 of 7) 187191 NM_001145954 210126 Mm.450045 NM_001145952 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma 0.000000 0.420382 4.820426 chr7-465 chr7 75290155 75290311 + 25.4 NA Intergenic Intergenic -38813 NM_029332 75547 Mm.216107 XM_133543 ENSMUSG00000066406 Akap13 1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC A kinase (PRKA) anchor protein 13 0.000000 0.407643 -1.037554 chr1-841 chr1 35202329 35202485 + 25.4 NA Intergenic Intergenic 407903 NM_145516 226971 Mm.292751 NM_145516 ENSMUSG00000026123 Plekhb2 2310009M15Rik|AU018239|Evt2|Phdc|evt-2 pleckstrin homology domain containing, family B (evectins) member 2 0.006410 0.484076 -1.817781 chr13-457 chr13 95184573 95184729 + 25.4 NA intron (NM_172589, intron 1 of 3) intron (NM_172589, intron 1 of 3) 26103 NM_172589 218454 Mm.316553 NM_172589 ENSMUSG00000045312 Lhfpl2 6030465B15|AI447312|AW050335|mKIAA0206 lipoma HMGIC fusion partner-like 2 0.000000 0.388535 -4.426816 chr11-821 chr11 88826846 88827002 + 25.4 NA exon (NM_009546, exon 4 of 9) exon (NM_009546, exon 4 of 9) 11432 NM_009546 217069 Mm.248445 NM_009546 ENSMUSG00000000275 Trim25 AA960166|AL022677|EFP|Zfp147 tripartite motif-containing 25 0.012821 0.477707 -5.735357 chr5-983 chr5 135970953 135971109 + 25.4 NA Intergenic ZP3AR|Satellite|Satellite -2809 NM_008898 18984 Mm.3863 NM_008898 ENSMUSG00000005514 Por 4933424M13Rik|CPR|CYPOR P450 (cytochrome) oxidoreductase 0.012821 0.528662 -4.079855 chr15-351 chr15 39772870 39773026 + 25.4 NA intron (NM_172814, intron 1 of 6) intron (NM_172814, intron 1 of 6) 883 NM_172814 239393 Mm.39874 NM_172814 ENSMUSG00000022305 Lrp12 AI848829|C820005L12Rik low density lipoprotein-related protein 12 0.032051 0.445860 -3.422189 chr10-556 chr10 94751877 94752033 + 25.4 NA intron (NM_009950, intron 2 of 2) intron (NM_009950, intron 2 of 2) 1830 NM_009950 12905 Mm.473739 NM_009950 ENSMUSG00000045867 Cradd RAIDD CASP2 and RIPK1 domain containing adaptor with death domain 0.019231 0.541401 -2.152222 chr8-474 chr8 26946052 26946208 + 25.4 NA Intergenic Intergenic -38186 NM_001079909 14182 Mm.265716 NM_001079908 ENSMUSG00000031565 Fgfr1 AW208770|FLG|Fgfr-1|Flt-2 fibroblast growth factor receptor 1 0.025641 0.592357 -0.454664 chrX-114 chrX 133195496 133195652 + 25.4 NA intron (NM_030688, intron 2 of 10) intron (NM_030688, intron 2 of 10) 277662 NM_030688 60367 Mm.328321 NM_030688 ENSMUSG00000059203 Il1rapl2 - interleukin 1 receptor accessory protein-like 2 0.000000 0.369427 -2.630008 chr13-446 chr13 70942861 70943017 + 25.4 NA Intergenic Intergenic 162067 NM_144837 218333 Mm.139738 XM_358313 BC018507 C77245|MGC27742|mKIAA0947 cDNA sequence BC018507 0.006410 0.496815 1.179224 chr9-584 chr9 32119218 32119374 + 25.4 NA Intergenic Intergenic -2686 NM_019659 56379 Mm.390168 NM_001168354 ENSMUSG00000041248 Kcnj1 Kir1.1|ROMK|Romk2 potassium inwardly-rectifying channel, subfamily J, member 1 0.012821 0.458599 -0.137098 chr9-548 chr9 7051964 7052120 + 25.4 NA intron (NM_029851, intron 60 of 88) intron (NM_029851, intron 60 of 88) 125004 NM_029851 110350 Mm.237596 NM_029851 ENSMUSG00000047193 Dync2h1 4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|mKIAA1997 dynein cytoplasmic 2 heavy chain 1 0.006410 0.407643 1.574793 chr16-372 chr16 86493564 86493720 + 25.4 NA Intergenic Intergenic -703321 NM_011782 23794 Mm.437478 NM_011782 ENSMUSG00000022894 Adamts5 9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) 0.012821 0.394904 -1.384349 chr17-553 chr17 84096534 84096690 + 25.4 NA promoter-TSS (NM_001001806) promoter-TSS (NM_001001806) -339 NM_001001806 12193 Mm.259321 NM_001001806 ENSMUSG00000045817 Zfp36l2 Brf2|ERF2|Tis11d zinc finger protein 36, C3H type-like 2 0.108974 0.630573 1.562426 chr12-640 chr12 81151917 81152073 + 25.4 NA intron (NM_134156, intron 1 of 20) intron (NM_134156, intron 1 of 20) 27216 NM_134156 109711 Mm.403477 NM_134156 ENSMUSG00000015143 Actn1 3110023F10Rik|Actn1a actinin, alpha 1 0.000000 0.452229 -4.128312 chr5-749 chr5 18590312 18590468 + 25.4 NA Intergenic Intergenic -148479 NM_001170746 50791 Mm.441283 XM_001000876 ENSMUSG00000040003 Magi2 Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705 membrane associated guanylate kinase, WW and PDZ domain containing 2 0.006410 0.337580 1.740239 chr9-674 chr9 70678171 70678327 + 25.4 NA intron (NM_008280, intron 1 of 8) intron (NM_008280, intron 1 of 8) 55776 NM_008280 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl lipase, hepatic 0.000000 0.541401 -4.395576 chr2-823 chr2 118193858 118194014 + 25.4 NA Intergenic L1MB8|LINE|L1 -22799 NM_009273 20813 Mm.363404 NM_009273 ENSMUSG00000009549 Srp14 14kDa|AW536328 signal recognition particle 14 0.000000 0.343949 -0.836277 chr3-559 chr3 95778158 95778314 + 25.4 NA Intergenic Intergenic -4973 NM_144899 229595 Mm.480058 NM_144899 ENSMUSG00000015850 Adamtsl4 MGC28749|Tsrc1 ADAMTS-like 4 0.019231 0.477707 -5.016834 chr2-806 chr2 102264648 102264804 + 25.4 NA Intergenic Intergenic -12095 NM_010218 14221 Mm.29730 NM_010218 ENSMUSG00000075012 Fjx1 - four jointed box 1 (Drosophila) 0.019231 0.420382 -8.726614 chr11-679 chr11 21135919 21136075 + 25.4 NA Intergenic Intergenic -2894 NM_139061 245944 Mm.170103 NM_139061 ENSMUSG00000020128 Vps54 5330404P15Rik|Hcc8|Vps54l|mSLP8|wr vacuolar protein sorting 54 (yeast) 0.012821 0.445860 -1.996658 chr1-833 chr1 32813022 32813178 + 25.4 NA Intergenic L1_Mur3|LINE|L1 -321261 NM_001164286 408191 Mm.479439 XM_887934 ENSMUSG00000067716 Gm5415 EG408191|Senp14 predicted gene 5415 0.006410 0.369427 3.663657 chr5-906 chr5 112333285 112333441 + 25.4 NA Intergenic Intergenic 135888 NR_033657 330166 Mm.44854 XM_489103 Miat 3632434I06|A230057G18Rik|Rncr2|gomafu myocardial infarction associated transcript (non-protein coding) 0.006410 0.535032 -4.494363 chr1-1097 chr1 167468274 167468430 + 25.4 NA intron (NM_001083897, intron 1 of 5) intron (NM_001083897, intron 1 of 5) 2864 NM_001001880 68481 Mm.46438 NM_001001880 ENSMUSG00000026566 Mpzl1 1110007A10Rik|PZR myelin protein zero-like 1 0.032051 0.426752 -7.998384 chr11-649 chr11 3996788 3996944 + 25.4 NA TTS (NM_144520) TTS (NM_144520) -1432 NM_026443 67900 Mm.41719 NM_026443 ENSMUSG00000004748 1700020C11Rik 2610507A21Rik|AV005788|Mtp18 RIKEN cDNA 1700020C11 gene 0.076923 0.547771 -5.157241 chr6-586 chr6 92897024 92897180 + 25.4 NA Intergenic Intergenic -8983 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.006410 0.439490 -0.682285 chr15-417 chr15 89372707 89372863 + 25.4 NA intron (NM_021423, intron 20 of 21) intron (NM_021423, intron 20 of 21) -23307 NM_013455 11434 Mm.57 NM_013455 ENSMUSG00000022622 Acr AI323726|MGC124043 acrosin prepropeptide 0.006410 0.490446 -4.007654 chr12-745 chr12 117831548 117831704 + 25.4 NA Intergenic Intergenic -126861 NM_175930 217944 Mm.227642 NM_175930 ENSMUSG00000041992 Rapgef5 4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef Rap guanine nucleotide exchange factor (GEF) 5 0.006410 0.407643 -1.590160 chr12-594 chr12 65748354 65748510 + 25.4 NA Intergenic Intergenic -88083 NM_001025605 217648 Mm.341586 NM_001025605 ENSMUSG00000047227 Gm527 MGC117765 predicted gene 527 0.000000 0.414013 -1.338742 chr12-618 chr12 74766696 74766852 + 25.4 NA Intergenic Intergenic -59930 NM_010431 15251 Mm.446610 NM_010431 ENSMUSG00000021109 Hif1a AA959795|HIF1alpha|MOP1|bHLHe78 hypoxia inducible factor 1, alpha subunit 0.012821 0.337580 -6.142553 chr10-550 chr10 93375758 93375914 + 25.4 NA Intergenic Intergenic 17826 NR_029764 723908 NR_029764 Mir331 Mirn331|mmu-mir-331 microRNA 331 0.006410 0.484076 1.968997 chr10-491 chr10 68846603 68846759 + 25.4 NA Intergenic Intergenic -82383 NM_170729 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G|MGC14049 ankyrin 3, epithelial 0.006410 0.490446 -4.981358 chr9-744 chr9 116725613 116725769 + 25.4 NA intron (NM_001172121, intron 5 of 14) intron (NM_001172121, intron 5 of 14) 375490 NM_001172123 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.006410 0.426752 2.013508 chr13-489 chr13 109093363 109093519 + 25.4 NA Intergenic Intergenic -71779 NM_001048250 75616 Mm.480644 NM_001048250 ENSMUSG00000071180 2810008M24Rik - RIKEN cDNA 2810008M24 gene 0.012821 0.414013 -0.275805 chr11-807 chr11 86842836 86842992 + 25.4 NA Intergenic Intergenic -32957 NM_001005341 77864 Mm.191894 NM_001005341 ENSMUSG00000018427 Ypel2 6430570G24|E130113K08Rik yippee-like 2 (Drosophila) 0.012821 0.496815 3.059515 chr5-1026 chr5 146565367 146565391 + 25.4 NA intron (NM_153599, intron 2 of 12) intron (NM_153599, intron 2 of 12) 29471 NM_153599 264064 Mm.260576 NM_153599 ENSMUSG00000029635 Cdk8 MGC37111 cyclin-dependent kinase 8 0.041667 0.560000 -13.869863 chr7-413 chr7 25375736 25375892 + 25.4 NA intron (NM_138586, intron 5 of 5) intron (NM_138586, intron 5 of 5) 7902 NM_138586 27998 Mm.207484 NM_138586 ENSMUSG00000061286 Exosc5 D7Wsu180e exosome component 5 0.012821 0.458599 -1.906015 chr13-433 chr13 60067366 60067522 + 25.4 NA Intergenic Intergenic 119714 NM_008086 14451 Mm.22701 NM_008086 ENSMUSG00000052957 Gas1 AW554192|Gas-1 growth arrest specific 1 0.025641 0.484076 -2.930143 chr1-999 chr1 107235350 107235506 + 25.4 NA Intergenic MER46C|DNA|MER2_type -51171 NM_001160368 320311 Mm.389162 NM_001160368 ENSMUSG00000047496 Rnf152 A930029B02Rik ring finger protein 152 0.006410 0.375796 3.542577 chr1-1045 chr1 137246950 137247106 + 25.4 NA promoter-TSS (NM_153774) promoter-TSS (NM_153774) -126 NM_153774 226432 Mm.271642 NM_153774 ENSMUSG00000041879 Ipo9 0710008K06Rik|AI845704|C78347|Imp9|Ranbp9|mKIAA1192 importin 9 0.108974 0.617834 -0.111094 chr17-397 chr17 8177907 8178063 + 25.4 NA promoter-TSS (NM_178774) promoter-TSS (NM_178774) -594 NR_028280 320111 Mm.442510 NM_178774 ENSMUSG00000055945 Prr18 9630019K15Rik proline rich region 18 0.006410 0.535032 -4.477879 chr7-532 chr7 113289717 113289873 + 25.4 NA Intergenic Intergenic -15247 NM_026143 67420 Mm.477631 NM_026143 ENSMUSG00000030759 Far1 2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2 fatty acyl CoA reductase 1 0.006410 0.490446 -4.602167 chr6-620 chr6 114241341 114241497 + 25.4 NA Intergenic RCHARR1|DNA|MER1_type -6810 NM_178703 232333 Mm.5260 NM_178703 ENSMUSG00000030310 Slc6a1 A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 0.038462 0.426752 -3.316344 chr6-486 chr6 37621873 37622029 + 25.4 NA Intergenic Intergenic 162171 NM_145364 208665 Mm.262635 NM_145364 ENSMUSG00000038641 Akr1d1 MGC25814 aldo-keto reductase family 1, member D1 0.000000 0.369427 -4.767680 chrX-129 chrX 156956052 156956208 + 25.4 NA Intergenic Intergenic -105010 NM_001103367 24004 Mm.477153 NM_001103367 ENSMUSG00000043518 Rai2 3f8 retinoic acid induced 2 0.000000 0.414013 -7.947176 chr9-650 chr9 61920953 61921109 + 25.4 NA Intergenic Intergenic -52419 NM_033320 93683 Mm.447195 NM_033320 ENSMUSG00000032252 Glce 1110017N23Rik|AI747411|C130034A12Rik|Hsepi glucuronyl C5-epimerase 0.057692 0.509554 -2.039449 chr10-486 chr10 66624081 66624237 + 25.4 NA intron (NM_207221, intron 10 of 25) intron (NM_207221, intron 10 of 25) 56479 NM_001036293 641340 Mm.380601 NM_001036293 ENSMUSG00000075000 Nrbf2 NRBF-2 nuclear receptor binding factor 2 0.000000 0.363057 -1.426122 chr14-226 chr14 24362352 24362508 + 25.4 NA intron (NM_183208, intron 2 of 23) intron (NM_183208, intron 2 of 23) -57557 NR_033492 77592 Mm.449977 NM_175264 4931406H21Rik - RIKEN cDNA 4931406H21 gene 0.012821 0.528662 -4.774666 chr15-440 chr15 101323413 101323569 + 25.4 NA Intergenic Intergenic -4154 NM_016879 53622 Mm.347934 NM_016879 Krt85 AA589597|BB007925|Hb5|Krt2-18 keratin 85 0.032051 0.458599 -3.925148 chr17-403 chr17 10401482 10401638 + 25.4 NA intron (NM_027032, intron 4 of 4) intron (NM_027032, intron 4 of 4) -238842 NM_001159517 19317 Mm.393248 NM_001159516 ENSMUSG00000062078 Qk 1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1 quaking 0.006410 0.490446 -4.237731 chr11-654 chr11 5142096 5142252 + 25.4 NA intron (NM_032396, intron 2 of 8) intron (NM_032396, intron 2 of 8) 19439 NM_032396 84035 Mm.209989 NM_032396 ENSMUSG00000020393 Kremen1 AV002070|Kremen|Krm1 kringle containing transmembrane protein 1 0.025641 0.535032 0.749237 chr8-462 chr8 15042941 15043097 + 25.4 NA 5' UTR (NM_001007591, exon 2 of 2) 5' UTR (NM_001007591, exon 2 of 2) 3027 NM_001007591 434285 Mm.334425 NM_001007591 ENSMUSG00000049008 BB014433 - expressed sequence BB014433 0.006410 0.490446 3.007190 chr11-918 chr11 119609614 119609770 + 25.4 NA intron (NM_028898, intron 7 of 33) intron (NM_028898, intron 7 of 33) -120207 NM_001085498 208092 Mm.306673 XM_126613 ENSMUSG00000025371 Chmp6 2400004G01Rik chromatin modifying protein 6 0.019231 0.477707 -4.108047 chr12-732 chr12 112483232 112483388 + 25.4 NA intron (NM_029056, intron 23 of 35) intron (NM_029056, intron 23 of 35) -54751 NM_001127685 217874 Mm.134213 XM_127170 BC048943 A930011N13 cDNA sequence BC048943 0.006410 0.573248 -2.762800 chr1-1052 chr1 140165602 140165758 + 25.4 NA Intergenic RLTR40|LTR|ERVK 75532 NM_177397 338375 Mm.114424 NM_177397 ENSMUSG00000026394 Atp6v1g3 MGC130213|MGC130214 ATPase, H+ transporting, lysosomal V1 subunit G3 0.000000 0.363057 2.302582 chr6-623 chr6 114656327 114656483 + 25.4 NA intron (NM_028835, intron 7 of 18) intron (NM_028835, intron 7 of 18) 47662 NM_028835 74244 Mm.275332 NM_028835 ENSMUSG00000030314 Atg7 1810013K23Rik|Agp7|Apg7l|Atg7l autophagy-related 7 (yeast) 0.012821 0.471338 -1.432937 chr12-719 chr12 109533511 109533667 + 25.4 NA Intergenic Intergenic -17565 NM_001163175 380785 Mm.342085 XM_354696 ENSMUSG00000040867 Begain BM948371|Gm897 brain-enriched guanylate kinase-associated 0.038462 0.566879 -1.865913 chr2-811 chr2 103090365 103090521 + 25.4 NA intron (NM_007914, intron 1 of 8) intron (NM_007914, intron 1 of 8) 13592 NM_007914 13661 Mm.10724 NM_007914 ENSMUSG00000012350 Ehf 9030625L19Rik|AU019492 ets homologous factor 0.019231 0.522293 -5.231337 chr12-531 chr12 20478063 20478219 + 25.4 NA Intergenic RLTR1D-int|LTR|ERV1 584128 NR_015521 69513 Mm.273972 NR_015521 1700030C10Rik KIAA0400 RIKEN cDNA 1700030C10 gene 0.038462 0.554140 -5.050845 chr2-791 chr2 91856168 91856324 + 25.4 NA Intergenic CpG -31237 NM_011957 26427 Mm.10353 NM_011957 ENSMUSG00000027230 Creb3l1 MGC25246|Oasis cAMP responsive element binding protein 3-like 1 0.070513 0.566879 -9.214892 chr2-757 chr2 68646409 68646565 + 25.4 NA Intergenic L2|LINE|L2 -15908 NM_172856 241447 Mm.393211 NM_172856 ENSMUSG00000027035 Lass6 4732462C07Rik|AW544719|T1L LAG1 homolog, ceramide synthase 6 0.000000 0.439490 -6.082320 chr17-414 chr17 12583688 12583844 + 25.4 NA promoter-TSS (NR_002853) promoter-TSS (NR_002853) -902 NR_002853 104103 Mm.436629 NR_002853 Airn 2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik antisense Igf2r RNA 0.006410 0.433121 -0.660601 chr12-677 chr12 93025038 93025194 + 25.4 NA Intergenic B3A|SINE|B2 -770402 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.000000 0.407643 -3.734109 chr6-476 chr6 31320534 31320690 + 25.4 NA Intergenic Intergenic -8378 NM_013791 27418 Mm.440531 NM_013791 ENSMUSG00000025609 Mkln1 A130067F06Rik|AU015903|BB154892 muskelin 1, intracellular mediator containing kelch motifs 0.025641 0.547771 -2.862083 chr9-598 chr9 44887925 44888081 + 25.4 NA Intergenic Intergenic -1402 NR_033547 100038468 Mm.446750 NR_033547 Gm10684 ENSMUSG00000074385 predicted gene 10684 0.006410 0.566879 0.227138 chr10-498 chr10 74747149 74747305 + 25.4 NA intron (NM_001145826, intron 16 of 18) intron (NM_001145826, intron 16 of 18) -13431 NM_009630 11540 Mm.333734 NM_009630 ENSMUSG00000020178 Adora2a A2AAR|A2aR|AA2AR|MGC118414 adenosine A2a receptor 0.012821 0.496815 -2.157474 chr9-614 chr9 49770837 49770993 + 25.4 NA Intergenic Intergenic -219616 NM_010875 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.006410 0.477707 -4.094776 chr5-934 chr5 118506047 118506203 + 25.4 NA promoter-TSS (NM_172998) promoter-TSS (NM_172998) -70 NM_001109902 269695 Mm.320042 NM_001109902 ENSMUSG00000032850 Rnft2 AW049082|B830028P19Rik|Tmem118 ring finger protein, transmembrane 2 0.102564 0.687898 -3.455602 chr5-881 chr5 101925738 101925894 + 25.4 NA Intergenic Intergenic -20803 NM_144955 18096 Mm.193072 NM_144955 ENSMUSG00000035187 Nkx6-1 NKX6A|Nkx6.1 NK6 homeobox 1 0.019231 0.490446 -0.148967 chr5-979 chr5 134703492 134703648 + 25.4 NA intron (NM_001081464, intron 1 of 29) intron (NM_001081464, intron 1 of 29) 37319 NM_001081465 57080 Mm.332735 NM_001081462 ENSMUSG00000023079 Gtf2ird1 1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MGC102438|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320 general transcription factor II I repeat domain-containing 1 0.000000 0.560510 -6.873507 chr17-404 chr17 10875827 10875983 + 25.4 NA intron (NM_016694, intron 1 of 11) intron (NM_016694, intron 1 of 11) 192164 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 MGC130518|PRKN Parkinson disease (autosomal recessive, juvenile) 2, parkin 0.012821 0.484076 -6.229150 chr1-1075 chr1 159109346 159109502 + 25.4 NA intron (NM_177644, intron 3 of 17) intron (NM_177644, intron 3 of 17) -139604 NR_027984 69953 Mm.286863 NR_027984 2810025M15Rik AI429618 RIKEN cDNA 2810025M15 gene 0.006410 0.407643 -2.608285 chr14-274 chr14 73861874 73862030 + 25.4 NA intron (NM_027581, intron 2 of 9) intron (NM_027581, intron 2 of 9) 3086 NM_027581 70859 Mm.320289 XM_895010 ENSMUSG00000021997 Lrrc63 4921509B22Rik leucine rich repeat containing 63 0.012821 0.433121 -6.155514 chr1-1057 chr1 142159163 142159319 + 25.4 NA intron (NM_001081027, intron 1 of 27) intron (NM_001081027, intron 1 of 27) 96574 NM_001081027 240776 Mm.329016 NM_001081027 ENSMUSG00000052726 Kcnt2 E330038N15Rik|Slick potassium channel, subfamily T, member 2 0.006410 0.382166 12.402862 chr8-550 chr8 90122832 90122988 + 25.4 NA Intergenic Intergenic 239787 NM_019626 12404 Mm.4880 NM_019626 ENSMUSG00000031654 Cbln1 AI323299 cerebellin 1 precursor protein 0.012821 0.522293 -4.063829 chr10-449 chr10 17411626 17411782 + 25.4 NA promoter-TSS (NM_010828) promoter-TSS (NM_010828) -939 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.032051 0.554140 -6.164580 chr6-579 chr6 91120197 91120353 + 25.4 NA Intergenic Intergenic -2043 NM_144919 232232 Mm.206218 NM_144919 ENSMUSG00000034245 Hdac11 MGC27683 histone deacetylase 11 0.012821 0.433121 -2.607762 chr11-739 chr11 61671222 61671378 + 25.4 NA promoter-TSS (NM_013881) promoter-TSS (NM_013881) -13 NM_013881 29869 Mm.162025 NM_013881 ENSMUSG00000004798 Ulk2 A830085I22Rik|AU015340|Unc51.2|mKIAA0623 Unc-51 like kinase 2 (C. elegans) 0.173077 0.738854 1.501976 chr9-581 chr9 31328448 31328604 + 25.4 NA Intergenic Intergenic -114723 NM_144936 235135 Mm.390134 NM_144936 ENSMUSG00000041737 Tmem45b BC018222|MGC25912|MGC37581 transmembrane protein 45b 0.019231 0.554140 -1.839592 chr1-984 chr1 93128505 93128661 + 25.4 NA promoter-TSS (NM_016717) promoter-TSS (NM_016717) -160 NM_016717 50880 Mm.25724 NM_016717 ENSMUSG00000026307 Scly 9830169H08|A930015N15Rik|SCL|Scly1|Scly2 selenocysteine lyase 0.070513 0.624204 -4.402392 chr13-381 chr13 32826873 32827029 + 25.4 NA intron (NM_030215, intron 4 of 6) intron (NM_030215, intron 4 of 6) 17457 NM_030215 78903 Mm.286680 NM_030215 ENSMUSG00000021400 Wrnip1 4833444L21Rik|WHIP|Wrnip Werner helicase interacting protein 1 0.012821 0.464968 0.031243 chr12-650 chr12 83510464 83510620 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -25343 NM_015812 50779 Mm.153013 NM_015812 ENSMUSG00000021219 Rgs6 - regulator of G-protein signaling 6 0.006410 0.452229 -4.164510 chr18-368 chr18 76192613 76192769 + 25.4 NA intron (NM_145356, intron 3 of 4) intron (NM_145356, intron 3 of 4) -174598 NM_010754 17126 Mm.391091 NM_010754 ENSMUSG00000024563 Smad2 Madh2|Madr2 MAD homolog 2 (Drosophila) 0.019231 0.490446 0.972706 chr11-781 chr11 78427545 78427701 + 25.4 NA intron (NM_008702, intron 3 of 10) intron (NM_008702, intron 3 of 10) -60693 NM_133706 69071 Mm.29431 NM_133706 ENSMUSG00000037278 Tmem97 1810014L12Rik|AI115531|AL022956|D11Bhm182e|MGC102369 transmembrane protein 97 0.000000 0.452229 -7.110468 chr17-436 chr17 26784974 26785130 + 25.4 NA 5' UTR (NM_080553, exon 1 of 58) 5' UTR (NM_080553, exon 1 of 58) 160 NM_080553 16440 Mm.458106 NM_080553 ENSMUSG00000042644 Itpr3 Ip3r3|Itpr-3 inositol 1,4,5-triphosphate receptor 3 0.128205 0.745223 -5.880018 chr14-223 chr14 23566310 23566466 + 25.4 NA Intergenic MIR|SINE|MIR 243243 NM_011297 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 MGC107549 ribosomal protein S24 0.000000 0.414013 -0.421803 chr8-526 chr8 73338589 73338745 + 25.4 NA intron (NM_001004062, intron 1 of 13) intron (NM_001004062, intron 1 of 13) 29895 NM_001004062 382056 Mm.227767 NM_001004062 ENSMUSG00000003575 Crtc1 AI413414|MGC90786|Mect1|R74955|TORC1|mKIAA0616 CREB regulated transcription coactivator 1 0.032051 0.624204 -5.598690 chr2-915 chr2 174397319 174397475 + 25.4 NA Intergenic Intergenic -6314 NM_007903 13616 Mm.9478 NM_007903 ENSMUSG00000027524 Edn3 114-CH19|114CH19|ls|tmgc48 endothelin 3 0.000000 0.477707 -7.318149 chr1-1040 chr1 134569292 134569448 + 25.4 NA promoter-TSS (NM_001160317) promoter-TSS (NM_001160317) -27 NM_001160317 269116 Mm.326702 NM_001160316 ENSMUSG00000026442 Nfasc AA387016|D430023G06Rik|NF|mKIAA0756 neurofascin 0.128205 0.751592 -2.763978 chr8-456 chr8 14226856 14227012 + 25.4 NA intron (NM_172910, intron 2 of 15) intron (NM_172910, intron 2 of 15) 131083 NM_172910 244310 Mm.478217 NM_001145965 ENSMUSG00000047495 Dlgap2 6430596N04Rik|DAP2|Sapap2 discs, large (Drosophila) homolog-associated protein 2 0.006410 0.382166 2.668662 chr8-429 chr8 9239096 9239252 + 25.4 NA intron (NM_173446, intron 1 of 2) intron (NM_173446, intron 1 of 2) 531821 NM_173446 270028 Mm.268163 NM_173446 ENSMUSG00000079157 Fam155a 6430500D16|AW121567|Tmem28 family with sequence similarity 155, member A 0.025641 0.496815 -3.945913 chr18-286 chr18 10610294 10610450 + 25.4 NA promoter-TSS (NM_001081222) promoter-TSS (NM_001081222) -22 NM_001081222 77805 Mm.450684 NM_001081222 ENSMUSG00000024293 Esco1 A930014I12Rik establishment of cohesion 1 homolog 1 (S. cerevisiae) 0.121795 0.719745 -4.779397 chr3-522 chr3 68852992 68853148 + 25.4 NA Intergenic Intergenic 73718 NM_008351 16159 Mm.103783 NM_001159424 ENSMUSG00000027776 Il12a IL-12p35|Il-12a|Ll12a|MGC151228|MGC151232|p35 interleukin 12a 0.012821 0.452229 -0.701022 chr4-877 chr4 153677556 153677712 + 25.4 NA Intergenic Intergenic -22365 NM_172878 242800 Mm.72944 NM_172878 ENSMUSG00000046637 Ttc34 4932418L02|B230396O12Rik tetratricopeptide repeat domain 34 0.006410 0.484076 -3.285413 chr13-501 chr13 118399572 118399728 + 25.4 NA Intergenic Intergenic 59797 NM_010330 13723 Mm.274926 NM_010330 ENSMUSG00000021728 Emb AL022799|Gp70|MGC21425 embigin 0.006410 0.452229 -5.757002 chr13-404 chr13 48395959 48396115 + 25.4 NA Intergenic Intergenic 122674 NM_031166 15904 Mm.458006 NM_031166 ENSMUSG00000021379 Id4 Idb4|bHLHb27 inhibitor of DNA binding 4 0.025641 0.426752 -3.650320 chr4-832 chr4 141335381 141335537 + 25.4 NA intron (NM_145402, intron 1 of 2) intron (NM_145402, intron 1 of 2) -20914 NR_027137 100038693 Mm.402714 XM_001478203 Gm10565 ENSMUSG00000073728 predicted gene 10565 0.025641 0.535032 -3.875430 chr10-570 chr10 109766624 109766780 + 25.4 NA Intergenic Intergenic -238057 NR_028438 109335 Mm.367727 XM_001480326 9230102K24Rik - RIKEN cDNA 9230102K24 gene 0.019231 0.401274 -5.105948 chr9-554 chr9 15347111 15347267 + 25.4 NA intron (NM_181816, intron 7 of 11) intron (NM_181816, intron 7 of 11) 31137 NM_181816 234964 Mm.32237 NM_181816 ENSMUSG00000039977 Ccdc67 4933401K09Rik coiled-coil domain containing 67 0.012821 0.458599 1.442034 chr12-733 chr12 112544194 112544350 + 25.4 NA Intergenic L1M5|LINE|L1 -10218 NM_001081169 104816 Mm.77133 NM_001081169 ENSMUSG00000037686 Aspg A530050D06Rik|AI429460|Gm690 asparaginase homolog (S. cerevisiae) 0.032051 0.496815 -6.086322 chr2-729 chr2 50631425 50631581 + 25.4 NA Intergenic Intergenic -100189 NR_033595 227885 Mm.301654 NR_033595 Gm13498 OTTMUSG00000012426 predicted gene 13498 0.012821 0.407643 -0.194632 chr12-544 chr12 29414817 29414973 + 25.4 NA exon (NM_201357, exon 4 of 9) exon (NM_201357, exon 4 of 9) 76800 NM_201357 380752 Mm.273724 NM_201357 ENSMUSG00000036613 Tssc1 D12Ertd604e tumor suppressing subtransferable candidate 1 0.025641 0.503185 -5.960198 chr11-666 chr11 11720350 11720506 + 25.4 NA intron (NM_001190448, intron 12 of 14) intron (NM_001190448, intron 12 of 14) -11463 NM_001163360 60530 Mm.236114 NM_001163359 ENSMUSG00000035455 Fignl1 - fidgetin-like 1 0.006410 0.471338 -4.881778 chr6-596 chr6 95667118 95667274 + 25.4 NA intron (NM_011507, intron 1 of 10) intron (NM_011507, intron 1 of 10) 17104 NM_011507 20917 Mm.426727 NM_011507 ENSMUSG00000061838 Suclg2 AF171077|AW556404|D6Wsu120e|MGC91183 succinate-Coenzyme A ligase, GDP-forming, beta subunit 0.025641 0.452229 2.320161 chr5-858 chr5 93385128 93385284 + 25.4 NA promoter-TSS (NM_172713) promoter-TSS (NM_172713) 18 NM_172713 231452 Mm.86564 NM_172713 ENSMUSG00000029415 Sdad1 4931421J16|AA591032|AW538460 SDA1 domain containing 1 0.102564 0.636943 -2.873025 chr5-994 chr5 138385512 138385668 + 25.4 NA promoter-TSS (NM_019747) promoter-TSS (NM_019747) -58 NM_019747 56314 Mm.19274 NM_019747 ENSMUSG00000037007 Zfp113 4732456B05Rik|KIAA4229|mKIAA4229 zinc finger protein 113 0.044872 0.535032 2.591355 chr4-665 chr4 59097145 59097301 + 25.4 NA promoter-TSS (NM_001033165) promoter-TSS (NM_001033165) -23 NM_001033165 72429 Mm.317801 NM_001033165 ENSMUSG00000070972 Dnajc25 2010109C08Rik|2010203O07Rik DnaJ (Hsp40) homolog, subfamily C, member 25 0.166667 0.808917 -11.075854 chr5-832 chr5 68097502 68097658 + 25.4 NA intron (NM_001038999, intron 1 of 36) intron (NM_001038999, intron 1 of 36) 28986 NM_001038999 11980 Mm.153230 NM_001038999 ENSMUSG00000037685 Atp8a1 AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI|KIAA4233|mKIAA4233 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 0.006410 0.394904 -1.505099 chr6-574 chr6 90524145 90524301 + 25.4 NA intron (NM_027406, intron 2 of 22) intron (NM_027406, intron 2 of 22) 7872 NM_027406 107747 Mm.30035 NM_027406 ENSMUSG00000030088 Aldh1l1 1810048F20Rik|Fthfd|Neut2 aldehyde dehydrogenase 1 family, member L1 0.019231 0.611465 7.127025 chr15-397 chr15 79486447 79486603 + 25.4 NA promoter-TSS (NM_028634) promoter-TSS (NM_028634) 44 NM_028634 73739 Mm.294441 NM_028634 ENSMUSG00000022428 Cby1 1110014P06Rik|CBY|PGEA14|Pgea1|arb1 chibby homolog 1 (Drosophila) 0.108974 0.681529 -9.078073 chr8-533 chr8 74201433 74201589 + 25.4 NA promoter-TSS (NM_015742) promoter-TSS (NM_015742) 68 NM_001163042 76478 Mm.27355 NM_001163042 ENSMUSG00000035439 Haus8 2410004L22Rik|Hice1 4HAUS augmin-like complex, subunit 8 0.057692 0.611465 -1.393260 chr11-728 chr11 58430313 58430469 + 25.4 NA promoter-TSS (NM_144544) promoter-TSS (NM_144544) -704 NM_144544 78354 Mm.58038 NM_144544 ENSMUSG00000037145 2210407C18Rik Ep1 RIKEN cDNA 2210407C18 gene 0.000000 0.471338 -5.156691 chr3-491 chr3 28543568 28543724 + 25.4 NA intron (NM_001163007, intron 1 of 31) intron (NM_001163007, intron 1 of 31) 89360 NM_001163009 665113 Mm.126193 XM_001473602 ENSMUSG00000027692 Tnik 1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik|KIAA0551|MGC189819|MGC189859 TRAF2 and NCK interacting kinase 0.019231 0.458599 5.176252 chr8-484 chr8 36284689 36284845 + 25.4 NA intron (NM_176933, intron 1 of 3) intron (NM_176933, intron 1 of 3) 8641 NM_176933 319520 Mm.392187 NM_176933 ENSMUSG00000031530 Dusp4 2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2 dual specificity phosphatase 4 0.032051 0.452229 -0.404086 chr4-731 chr4 100258486 100258642 + 25.4 NA Intergenic Intergenic -16046 NM_198037 320508 Mm.151962 NM_198037 ENSMUSG00000028532 Cachd1 1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573 cache domain containing 1 0.012821 0.503185 1.726723 chr11-888 chr11 109253379 109253535 + 25.4 NA 3' UTR (NM_025275, exon 9 of 9) 3' UTR (NM_025275, exon 9 of 9) 11422 NM_025275 13929 Mm.211850 NM_025275 ENSMUSG00000020610 Amz2 AA408420|ESTM12|X83328 archaelysin family metallopeptidase 2 0.012821 0.439490 -7.919776 chr14-297 chr14 117358211 117358367 + 25.4 NA Intergenic Intergenic 202334 NM_001163675 239273 Mm.478748 NM_001033336 ENSMUSG00000032849 Abcc4 D630049P08Rik|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 0.025641 0.458599 -0.121825 chr12-699 chr12 106084944 106085100 + 25.4 NA intron (NM_029654, intron 1 of 41) intron (NM_029654, intron 1 of 41) 1269 NM_029654 76559 Mm.125279 NM_029654 ENSMUSG00000041341 Atg2b 2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|KIAA4067|mKIAA4067 ATG2 autophagy related 2 homolog B (S. cerevisiae) 0.019231 0.433121 0.979679 chr4-616 chr4 10801071 10801227 + 25.4 NA promoter-TSS (NM_026005) promoter-TSS (NM_026005) -495 NM_026005 67157 Mm.440552 NM_026005 ENSMUSG00000059482 2610301B20Rik AI428449 RIKEN cDNA 2610301B20 gene 0.032051 0.452229 -4.037381 chr1-898 chr1 64029194 64029350 + 25.4 NA intron (NM_033563, intron 1 of 3) intron (NM_033563, intron 1 of 3) 26393 NM_033563 93691 Mm.458200 NM_033563 ENSMUSG00000025959 Klf7 9830124P08Rik Kruppel-like factor 7 (ubiquitous) 0.006410 0.350318 -1.851354 chr4-816 chr4 136720271 136720427 + 25.4 NA Intergenic Intergenic -5022 NM_027063 69380 Mm.272519 NM_027063 ENSMUSG00000041399 1700013G24Rik AI507018 RIKEN cDNA 1700013G24 gene 0.006410 0.585987 -0.043567 chr7-535 chr7 113972826 113972982 + 25.4 NA Intergenic Intergenic -63942 NM_025846 66922 Mm.276572 NM_025846 ENSMUSG00000055723 Rras2 2610016H24Rik|C86394|TC21 related RAS viral (r-ras) oncogene homolog 2 0.012821 0.573248 -4.482915 chr5-762 chr5 28098765 28098921 + 25.4 NA intron (NM_018878, intron 6 of 20) intron (NM_018878, intron 6 of 20) 23283 NM_018878 55982 Mm.409895 NM_018878 ENSMUSG00000002221 Paxip1 D5Ertd149e|PTIP PAX interacting (with transcription-activation domain) protein 1 0.012821 0.471338 -1.725975 chr12-575 chr12 48948926 48949082 + 25.4 NA Intergenic L1_Mus1|LINE|L1 -1254272 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.000000 0.426752 -2.009931 chr18-361 chr18 65224713 65224869 + 25.4 NA intron (NM_031881, intron 4 of 29) intron (NM_031881, intron 4 of 29) 75896 NM_031881 83814 Mm.98668 NM_001114386 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b neural precursor cell expressed, developmentally down-regulated gene 4-like 0.012821 0.439490 -5.891662 chr7-557 chr7 124190334 124190490 + 25.4 NA Intergenic Intergenic -898815 NM_001081329 210162 Mm.135397 NM_001081329 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 0.000000 0.350318 -2.107620 chr14-228 chr14 25502537 25502693 + 25.4 NA exon (NM_178668, exon 1 of 3) exon (NM_178668, exon 1 of 3) 415 NM_178668 211948 Mm.439831 NM_178668 ENSMUSG00000043702 Pde12 2'-PDE|E430028B21Rik phosphodiesterase 12 0.115385 0.700637 2.057863 chr5-823 chr5 65670262 65670418 + 25.4 NA promoter-TSS (NM_024471) promoter-TSS (NM_024471) 226 NM_011292 20005 Mm.422908 NM_011292 ENSMUSG00000047215 Rpl9 MGC102393 ribosomal protein L9 0.102564 0.681529 -1.072511 chr2-929 chr2 180345179 180345335 + 25.4 NA Intergenic Intergenic 17471 NR_029901 723954 NR_029901 Mir133a-2 Mirn133a-2 microRNA 133a-2 0.006410 0.598726 1.968997 chr11-901 chr11 114691411 114691567 + 25.4 NA Intergenic Intergenic -14641 NM_170758 217303 Mm.294439 NM_170758 ENSMUSG00000034652 Cd300a B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1 CD300A antigen 0.012821 0.579618 -4.075205 chr3-645 chr3 145989100 145989256 + 25.4 NA intron (NM_172864, intron 18 of 22) intron (NM_172864, intron 18 of 22) 56244 NM_172864 242253 Mm.235040 NM_172864 ENSMUSG00000043020 Wdr63 4931433A13Rik WD repeat domain 63 0.025641 0.560510 -1.067073 chr18-374 chr18 80339117 80339273 + 25.4 NA Intergenic Intergenic 23483 NM_199197 68731 Mm.392326 NM_199197 ENSMUSG00000024570 1110032A13Rik AI595940 RIKEN cDNA 1110032A13 gene 0.006410 0.503185 -7.475280 chr6-498 chr6 48157133 48157289 + 25.4 NA Intergenic MMVL30-int|LTR|ERV1 -141032 NM_001163475 69228 Mm.207555 XM_001474507 ENSMUSG00000057691 Zfp746 2810407L07Rik|AI317225|Znf746 zinc finger protein 746 0.025641 0.592357 -5.359476 chr9-656 chr9 64819810 64819966 + 25.4 NA promoter-TSS (NM_021345) promoter-TSS (NM_021345) -165 NM_021345 57874 Mm.480367 NM_021345 ENSMUSG00000033629 Ptplad1 4930523M17Rik|AW742319|B-ind1|HACD3|Hspc121|MGC25483 protein tyrosine phosphatase-like A domain containing 1 0.038462 0.528662 -9.852887 chr9-757 chr9 120341102 120341258 + 25.4 NA promoter-TSS (NM_026892) promoter-TSS (NM_026892) -123 NM_026892 68969 Mm.28753 NM_026892 ENSMUSG00000006941 Eif1b 1500010M16Rik|3110001N14Rik|Gc20 eukaryotic translation initiation factor 1B 0.153846 0.796178 -5.543797 chr9-689 chr9 80014911 80015067 + 25.4 NA intron (NM_001039546, intron 5 of 32) intron (NM_001039546, intron 5 of 32) 64272 NM_001039546 17920 Mm.4040 NM_001039546 ENSMUSG00000033577 Myo6 BC029719|Tlc|sv myosin VI 0.000000 0.343949 7.063970 chr5-927 chr5 116961111 116961267 + 25.4 NA Intergenic Intergenic -108373 NM_026886 68955 Mm.146779 NM_026886 ENSMUSG00000063919 Srrm4 1500001A10Rik|B230202K19Rik|mKIAA1853|nSR100 serine/arginine repetitive matrix 4 0.000000 0.471338 -2.082272 chr9-704 chr9 92261443 92261599 + 25.4 NA 5' UTR (NM_178711, exon 1 of 9) 5' UTR (NM_178711, exon 1 of 9) 373 NM_178711 235527 Mm.55289 NM_178711 ENSMUSG00000032377 Plscr4 AV245873 phospholipid scramblase 4 0.076923 0.681529 -5.878898 chr9-739 chr9 112907521 112907677 + 25.4 NA Intergenic Intergenic 649358 NM_001164678 18571 Mm.29816 NM_001164677 ENSMUSG00000032504 Pdcd6ip AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375 programmed cell death 6 interacting protein 0.006410 0.420382 -4.067188 chr2-723 chr2 44840562 44840718 + 25.4 NA intron (NM_015753, intron 3 of 9) intron (NM_015753, intron 3 of 9) -92506 NM_001177394 433424 Mm.441408 XM_001472634 Gm13476 OTTMUSG00000012358 predicted gene 13476 0.019231 0.401274 -0.403981 chr13-409 chr13 49461158 49461314 + 25.4 NA exon (NM_199056, exon 10 of 13) exon (NM_199056, exon 10 of 13) 27989 NM_199056 75678 Mm.390586 NM_199056 ENSMUSG00000021385 Ippk 1810043M15Rik|InsP6 inositol 1,3,4,5,6-pentakisphosphate 2-kinase 0.025641 0.515924 -3.972586 chr10-450 chr10 18433045 18433201 + 25.4 NA promoter-TSS (NM_001033258) promoter-TSS (NM_001033258) 51 NM_001033258 215821 Mm.428163 NM_001033258 ENSMUSG00000019852 D10Bwg1379e 9630004D11|Arfgef3|B930094H20Rik|mKIAA1244 DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed 0.121795 0.726115 -10.484434 chr4-712 chr4 88113112 88113268 + 25.4 NA Intergenic L1_Mur2|LINE|L1 2500 NM_177347 230396 Mm.246592 NM_177347 ENSMUSG00000063376 Ifna13 - interferon alpha 13 0.006410 0.324841 -3.862084 chr10-561 chr10 95746508 95746664 + 25.4 NA Intergenic Intergenic -300102 NM_007569 12226 Mm.23811 NM_007569 ENSMUSG00000036478 Btg1 AI426953|AW546738 B-cell translocation gene 1, anti-proliferative 0.000000 0.369427 0.568632 chr5-877 chr5 100439868 100440024 + 25.4 NA Intergenic Intergenic -39836 NM_182841 231503 Mm.99790 NM_182841 ENSMUSG00000050640 Tmem150c - transmembrane protein 150C 0.006410 0.496815 -7.256665 chr6-446 chr6 7070225 7070381 + 25.4 NA Intergenic Intergenic 164286 NM_001077713 71238 Mm.480405 NM_001077713 ENSMUSG00000042505 Acn9 0610005M07Rik|4933430A16Rik ACN9 homolog (S. cerevisiae) 0.012821 0.515924 -8.794736 chr11-742 chr11 62838655 62838811 + 25.4 NA Intergenic Intergenic -39120 NM_027660 71062 Mm.23534 NM_027660 ENSMUSG00000042189 Tekt3 4933407G07Rik tektin 3 0.006410 0.458599 -6.058980 chr8-582 chr8 123424817 123424973 + 25.4 NA intron (NM_001145896, intron 1 of 15) intron (NM_001145896, intron 1 of 15) 1510 NM_001145896 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.044872 0.611465 2.537833 chr19-244 chr19 44748049 44748205 + 25.4 NA Intergenic Intergenic -62577 NM_011037 18504 Mm.445309 NM_011037 ENSMUSG00000004231 Pax2 Pax-2 paired box gene 2 0.012821 0.490446 -5.808552 chr14-302 chr14 121991167 121991323 + 25.4 NA intron (NM_144844, intron 21 of 23) intron (NM_144844, intron 21 of 23) 57100 NM_145466 223267 Mm.379358 NM_145466 ENSMUSG00000041625 A2ld1 GGACT|MGC7867 AIG2-like domain 1 0.006410 0.363057 -8.375718 chr1-875 chr1 52287135 52287291 + 25.4 NA Intergenic Intergenic -109436 NM_001113383 14660 Mm.440465 NM_001081081 ENSMUSG00000026103 Gls 6330442B14|AI314027|B230365M23Rik glutaminase 0.006410 0.452229 -8.227240 chr3-597 chr3 119465987 119466143 + 25.4 NA Intergenic Intergenic 309327 NM_019550 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 0.006410 0.433121 -4.647956 chr1-926 chr1 74320090 74320246 + 25.4 NA TTS (NM_013612) TTS (NM_013612) -4647 NM_153088 227292 Mm.165042 NM_153088 ENSMUSG00000026176 Ctdsp1 GIP|NLIIF|Nif3|SCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 0.057692 0.643312 -3.102413 chr11-697 chr11 32981821 32981977 + 25.4 NA Intergenic Intergenic 65501 NM_008005 14172 Mm.339812 NM_008005 ENSMUSG00000057967 Fgf18 D130055P09Rik|FGF-18 fibroblast growth factor 18 0.006410 0.433121 -6.015880 chr10-524 chr10 82316220 82316376 + 25.4 NA intron (NM_001042513, intron 12 of 14) intron (NM_001042513, intron 12 of 14) 19874 NM_025499 66341 Mm.443284 NM_025499 Eid3 1700027M21Rik|MGC118226 EP300 interacting inhibitor of differentiation 3 0.012821 0.528662 -4.100096 chr14-251 chr14 45606235 45606391 + 25.4 NA Intergenic (CACAA)n|Simple_repeat|Simple_repeat -76104 NM_028222 72391 Mm.272394 XM_899867 ENSMUSG00000037628 Cdkn3 2410006H10Rik cyclin-dependent kinase inhibitor 3 0.000000 0.445860 -3.652937 chr4-788 chr4 127900145 127900301 + 25.4 NA Intergenic Intergenic -137024 NM_027036 69317 Mm.477033 NM_027036 ENSMUSG00000048686 Hmgb4 1700001F22Rik|AI326135|MGC107306 high-mobility group box 4 0.012821 0.522293 -3.901809 chr6-532 chr6 62193563 62193719 + 25.4 NA intron (NM_001164316, intron 10 of 10) intron (NM_001164316, intron 10 of 10) -992793 NM_008167 14804 Mm.447390 NM_008167 ENSMUSG00000071424 Grid2 B230104L07Rik|GluRdelta2|Lc|Lc|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr glutamate receptor, ionotropic, delta 2 0.006410 0.426752 4.832441 chr3-558 chr3 95710582 95710738 + 25.4 NA intron (NM_001026212, intron 1 of 2) intron (NM_001026212, intron 1 of 2) 277 NM_001026212 56205 Mm.241365 NM_001026212 ENSMUSG00000038619 Ensa 1700020C18Rik|2610007F17Rik|AI451924 endosulfine alpha 0.096154 0.668790 -4.167644 chr19-202 chr19 7648045 7648201 + 25.4 NA intron (NM_139269, intron 4 of 4) intron (NM_139269, intron 4 of 4) 23621 NM_139269 225845 Mm.274810 NM_139269 ENSMUSG00000060675 Pla2g16 C78643|Hrasls3|Hrev107|MLP-3 phospholipase A2, group XVI 0.000000 0.375796 0.538595 chr1-808 chr1 9573816 9573972 + 25.4 NA intron (NR_015470, intron 3 of 4) intron (NR_015470, intron 3 of 4) -12586 NM_178399 76982 Mm.480559 NM_178399 ENSMUSG00000067879 3110035E14Rik AI415019|AV164974|R75066 RIKEN cDNA 3110035E14 gene 0.006410 0.388535 -3.706528 chr12-687 chr12 101357668 101357824 + 25.4 NA intron (NM_026681, intron 10 of 29) intron (NM_026681, intron 10 of 29) -48498 NM_001177673 238377 Mm.32160 NM_001177673 ENSMUSG00000047415 Gpr68 BB131428|Ogr1 G protein-coupled receptor 68 0.006410 0.471338 -2.584945 chr8-517 chr8 64723036 64723192 + 25.4 NA intron (NM_001081390, intron 2 of 19) intron (NM_001081390, intron 2 of 19) 71718 NM_001081390 72333 Mm.458226 NM_001081390 ENSMUSG00000058056 Palld 2410003B16Rik|6030492A02|MGC150248 palladin, cytoskeletal associated protein 0.025641 0.426752 3.051145 chr17-534 chr17 64351351 64351507 + 25.4 NA Intergenic L4|LINE|RTE -146510 NM_008549 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 mannosidase 2, alpha 1 0.000000 0.439490 2.761235 chr17-529 chr17 61719735 61719891 + 25.4 NA Intergenic Intergenic 846966 NM_207654 13640 Mm.401670 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 0.012821 0.407643 -1.641488 chr17-419 chr17 23262660 23262816 + 25.4 NA Intergenic Intergenic 29110 NM_001033496 449521 Mm.268582 NM_001033496 ENSMUSG00000071256 Zfp213 BC038178|D17Ertd197e zinc finger protein 213 0.032051 0.496815 -3.420219 chr18-276 chr18 4920984 4921140 + 25.4 NA Intergenic CpG -125524 NM_153153 225115 Mm.136791 NM_153153 ENSMUSG00000024236 Svil AU024053|B430302E16Rik supervillin 0.064103 0.605096 -2.364966 chr10-433 chr10 6282582 6282738 + 25.4 NA intron (NM_001170785, intron 20 of 27) intron (NM_001170785, intron 20 of 27) 90806 NM_001170786 270685 Mm.184752 NM_001170785 ENSMUSG00000040675 Mthfd1l 2410004L15Rik|AI647056|Fthfsdc1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like 0.006410 0.503185 2.774508 chr11-737 chr11 61047733 61047889 + 25.4 NA Intergenic Intergenic 22875 NM_001112725 11670 Mm.4257 NM_001112725 ENSMUSG00000019102 Aldh3a1 Ahd-4|Ahd4|Aldh|Aldh3 aldehyde dehydrogenase family 3, subfamily A1 0.038462 0.515924 -5.212957 chr4-704 chr4 85957251 85957407 + 25.4 NA intron (NM_001081096, intron 2 of 3) intron (NM_001081096, intron 2 of 3) 72205 NM_001081096 75811 Mm.56451 NM_001081096 ENSMUSG00000028492 Fam154a 4930500O09Rik family with sequence similarity 154, member A 0.025641 0.388535 5.555216 chr4-880 chr4 154538396 154538552 + 25.4 NA exon (NM_178699, exon 1 of 1) exon (NM_178699, exon 1 of 1) 203 NM_178699 230991 Mm.29083 NM_178699 ENSMUSG00000074738 B930041F14Rik MNCb-3966 RIKEN cDNA B930041F14 gene 0.134615 0.732484 -6.303741 chr3-604 chr3 122773738 122773894 + 25.4 NA intron (NM_153422, intron 7 of 20) intron (NM_153422, intron 7 of 20) 52637 NM_153422 242202 Mm.134911 NM_153422 ENSMUSG00000053965 Pde5a Cgbpde|Cn5n|Pde5|Pde5a1 phosphodiesterase 5A, cGMP-specific 0.012821 0.426752 -3.784788 chr2-706 chr2 32209889 32210045 + 25.4 NA promoter-TSS (NM_008491) promoter-TSS (NM_008491) -219 NM_008491 16819 Mm.9537 NM_008491 ENSMUSG00000026822 Lcn2 24p3|AW212229|Sip24 lipocalin 2 0.006410 0.554140 3.348348 chr3-538 chr3 84822524 84822680 + 25.4 NA Intergenic Intergenic 70484 NM_177260 320782 Mm.107370 NM_177260 ENSMUSG00000056498 Tmem154 9930117H01Rik transmembrane protein 154 0.000000 0.433121 -2.490685 chr6-510 chr6 52510694 52510850 + 25.4 NA intron (NM_145567, intron 4 of 7) intron (NM_145567, intron 4 of 7) 59106 NM_145567 58875 Mm.286458 NM_145567 ENSMUSG00000029776 Hibadh 6430402H10Rik|AI265272 3-hydroxyisobutyrate dehydrogenase 0.000000 0.433121 -4.611970 chr12-752 chr12 119065482 119065638 + 25.4 NA Intergenic Intergenic -224870 NM_177082 320145 Mm.51682 NM_177082 ENSMUSG00000048562 Sp8 D930049B17Rik|MGC105193|mBtd trans-acting transcription factor 8 0.006410 0.452229 2.535293 chr7-593 chr7 141066744 141066900 + 25.4 NA promoter-TSS (NM_025886) promoter-TSS (NM_025886) -357 NM_025886 66985 Mm.21202 NM_025886 ENSMUSG00000038618 Rassf7 2400009B11Rik|AW210608 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 0.025641 0.579618 -9.340401 chr2-860 chr2 150437797 150437953 + 25.4 NA Intergenic Intergenic -2646 NM_172117 12497 Mm.275524 NM_172117 ENSMUSG00000033068 Entpd6 2700026H11Rik|Cd39l2|NTPDase-6 ectonucleoside triphosphate diphosphohydrolase 6 0.000000 0.471338 -4.157831 chr11-847 chr11 98767790 98767946 + 25.4 NA intron (NM_001177302, intron 3 of 9) intron (NM_001177302, intron 3 of 9) -8692 NM_001176528 19401 Mm.439744 NM_001176528 ENSMUSG00000037992 Rara Nr1b1|RAR|RARalpha1 retinoic acid receptor, alpha 0.025641 0.694268 -0.743662 chr4-610 chr4 7887609 7887765 + 25.4 NA Intergenic Intergenic 278501 NM_007592 12319 Mm.119320 NM_007592 ENSMUSG00000041261 Car8 AW546993|Ca8|Cals|Cals1|Carp|wdl carbonic anhydrase 8 0.006410 0.477707 2.673198 chr1-815 chr1 13986817 13986973 + 25.4 NA Intergenic Intergenic -214752 NR_004447 433273 Mm.309092 NR_004447 Gm5523 EG433273 glyceraldehyde-3-phosphate dehydrogenase pseudogene 0.019231 0.554140 -1.728499 chr2-859 chr2 150258545 150258701 + 25.4 NA Intergenic Intergenic -3232 NM_009977 13011 Mm.12965 NM_009977 ENSMUSG00000068129 Cst7 Cmap|MGC151424|MGC151426 cystatin F (leukocystatin) 0.006410 0.496815 -1.340217 chr2-691 chr2 27769611 27769767 + 25.4 NA intron (NM_015734, intron 4 of 65) intron (NM_015734, intron 4 of 65) 61256 NM_015734 12831 Mm.7281 NM_015734 ENSMUSG00000026837 Col5a1 AI413331 collagen, type V, alpha 1 0.006410 0.535032 2.485509 chr12-701 chr12 106185708 106185864 + 25.4 NA promoter-TSS (NM_011112) promoter-TSS (NM_011112) 35 NM_011112 18789 Mm.255877 NM_011112 ENSMUSG00000021111 Papola Pap|PapIII|Plap poly (A) polymerase alpha 0.128205 0.694268 -4.339329 chr6-558 chr6 85923324 85923480 + 25.4 NA intron (NM_028099, intron 3 of 8) intron (NM_028099, intron 3 of 8) 3899 NM_028099 72102 Mm.24007 NM_028099 ENSMUSG00000030002 Dusp11 2010300F21Rik|AI481497 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) 0.000000 0.464968 3.338228 chr19-268 chr19 59336027 59336183 + 25.4 NA intron (NM_172523, intron 10 of 15) intron (NM_172523, intron 10 of 15) 21978 NM_172523 214084 Mm.361919 NM_172523 ENSMUSG00000025094 Slc18a2 1110037L13Rik|9330105E13|MGC90556|Vmat2 solute carrier family 18 (vesicular monoamine), member 2 0.012821 0.445860 2.024076 chr11-837 chr11 97324307 97324463 + 25.4 NA Intergenic Intergenic 58136 NM_021493 58996 Mm.394118 NM_021493 ENSMUSG00000049807 Arhgap23 A330041B18Rik Rho GTPase activating protein 23 0.006410 0.464968 -5.359476 chr12-728 chr12 111504270 111504426 + 25.4 NA intron (NM_198023, intron 2 of 11) intron (NM_198023, intron 2 of 11) 16743 NM_198023 217864 Mm.23808 NM_198023 ENSMUSG00000037896 Rcor1 5730409O11|6720480E22Rik|AU042633|D12Wsu95e|mKIAA0071 REST corepressor 1 0.025641 0.452229 -5.304438 chr15-332 chr15 31376680 31376836 + 25.4 NA Intergenic Intergenic 21520 NM_145852 252967 Mm.436668 NM_145852 ENSMUSG00000022236 Ropn1l ASP|AV047578|Akapasp ropporin 1-like 0.044872 0.515924 -7.015049 chr19-200 chr19 7308241 7308397 + 25.4 NA promoter-TSS (NM_027643) promoter-TSS (NM_027643) -53 NM_027643 70999 Mm.474361 XM_001473047 ENSMUSG00000024764 Naa40 4931433E08Rik|AU023197|Nat11 N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae) 0.166667 0.732484 -4.996291 chr2-754 chr2 68146736 68146892 + 25.4 NA intron (NM_016866, intron 10 of 17) intron (NM_016866, intron 10 of 17) 126006 NM_016866 53416 Mm.198414 NM_016866 ENSMUSG00000027030 Stk39 AW227544|AW556857|DCHT|SPAK serine/threonine kinase 39, STE20/SPS1 homolog (yeast) 0.019231 0.477707 0.159219 chr9-761 chr9 121264257 121264413 + 25.4 NA intron (NM_175114, intron 2 of 15) intron (NM_175114, intron 2 of 15) 48680 NM_175114 67095 Mm.480320 NM_175114 ENSMUSG00000032536 Trak1 2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042 trafficking protein, kinesin binding 1 0.012821 0.573248 -4.549839 chr11-848 chr11 98770485 98770641 + 25.4 NA intron (NM_001177302, intron 3 of 9) intron (NM_001177302, intron 3 of 9) -5997 NM_001176528 19401 Mm.439744 NM_001176528 ENSMUSG00000037992 Rara Nr1b1|RAR|RARalpha1 retinoic acid receptor, alpha 0.025641 0.547771 -3.696578 chr5-917 chr5 114826381 114826537 + 25.4 NA Intergenic Intergenic -2790 NM_001004180 433940 Mm.194212 NM_001004180 ENSMUSG00000041930 BC057022 MGC67174 cDNA sequence BC057022 0.057692 0.687898 -4.703070 chr2-867 chr2 154300962 154301118 + 25.4 NA Intergenic Intergenic -3768 NM_199304 228807 Mm.103555 NM_199304 ENSMUSG00000059842 Zfp341 MGC73471|Znf341 zinc finger protein 341 0.019231 0.503185 -4.552863 chr8-596 chr8 126220638 126220794 + 25.4 NA intron (NM_172287, intron 1 of 14) intron (NM_172287, intron 1 of 14) 1914 NM_172287 234857 Mm.150200 NM_172287 ENSMUSG00000010154 Spire2 BC026502|KIAA1832|MGC31610|Spir-2|Spir2 spire homolog 2 (Drosophila) 0.006410 0.515924 -4.908174 chr11-714 chr11 52777585 52777741 + 25.4 NA intron (NM_177059, intron 3 of 15) intron (NM_177059, intron 3 of 15) 169535 NM_177059 320027 Mm.44518 NM_177059 ENSMUSG00000036264 Fstl4 B230374F23Rik|KIAA1061|SPIG1|mKIAA1061 follistatin-like 4 0.000000 0.452229 -2.395482 chr12-562 chr12 39687474 39687630 + 25.4 NA Intergenic Intergenic 393419 NM_001163154 14009 Mm.4866 NM_001163154 ENSMUSG00000004151 Etv1 ER81|Etsrp81 ets variant gene 1 0.006410 0.337580 0.808065 chr15-379 chr15 68896815 68896971 + 25.4 NA intron (NM_010158, intron 7 of 8) intron (NM_010158, intron 7 of 8) 138805 NM_010158 13992 Mm.17964 NM_010158 ENSMUSG00000022332 Khdrbs3 Etle|SLM-2|Slm2|T-STAR KH domain containing, RNA binding, signal transduction associated 3 0.000000 0.414013 -4.091317 chr9-612 chr9 49574026 49574182 + 25.4 NA Intergenic Intergenic -22805 NM_010875 17967 Mm.439182 NM_001081445 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 0.000000 0.394904 1.946731 chr16-332 chr16 30519266 30519422 + 25.4 NA promoter-TSS (NM_177632) promoter-TSS (NM_177632) -125 NM_177632 224093 Mm.28244 NM_177632 ENSMUSG00000046546 Fam43a Tuf1 family with sequence similarity 43, member A 0.057692 0.573248 -0.065339 chr7-418 chr7 29940645 29940801 + 25.4 NA promoter-TSS (NM_027259) promoter-TSS (NM_027259) 66 NM_025548 66411 Mm.27947 NM_025548 ENSMUSG00000006095 Tbcb 2410007D12Rik|AU041393|CG22|CKAPI|Ckap1 tubulin folding cofactor B 0.076923 0.636943 -3.978670 chr14-232 chr14 30550289 30550445 + 25.4 NA intron (NM_001024604, intron 15 of 27) intron (NM_001024604, intron 15 of 27) 80302 NM_025295 26363 Mm.282679 NM_025295 ENSMUSG00000021900 Btd - biotinidase 0.000000 0.464968 -2.573541 chr17-524 chr17 56556612 56556768 + 25.4 NA intron (NM_001039114, intron 2 of 14) intron (NM_001039114, intron 2 of 14) 2881 NM_001039114 328845 Mm.179421 NM_001039114 ENSMUSG00000024207 Acsbg2 Bgr acyl-CoA synthetase bubblegum family member 2 0.006410 0.566879 -2.327848 chr2-766 chr2 72400705 72400861 + 25.4 NA Intergenic Intergenic 123726 NM_025866 66953 Mm.270676 NM_025866 ENSMUSG00000055612 Cdca7 2310021G01Rik|AU044109|JPO1 cell division cycle associated 7 0.006410 0.420382 -1.928760 chr6-502 chr6 48747522 48747678 + 25.4 NA Intergenic Intergenic 22974 NM_023056 65963 Mm.28385 NM_001164207 ENSMUSG00000029810 Tmem176b 1810009M01Rik|Clast1|Lr8 transmembrane protein 176B 0.025641 0.503185 -4.480193 chr10-459 chr10 26538635 26538791 + 25.4 NA intron (NM_176837, intron 2 of 14) intron (NM_176837, intron 2 of 14) 76786 NM_176837 73910 Mm.356496 NM_176837 ENSMUSG00000039031 Arhgap18 4833419J07Rik|AI314906|AI843501 Rho GTPase activating protein 18 0.006410 0.273885 3.769503 chr11-854 chr11 100632970 100633126 + 25.4 NA intron (NM_001113563, intron 1 of 18) intron (NM_001113563, intron 1 of 18) 5612 NM_011489 20851 Mm.34064 NM_001113563 ENSMUSG00000020919 Stat5b - signal transducer and activator of transcription 5B 0.006410 0.496815 -3.412087 chr1-1025 chr1 129311884 129312040 + 25.4 NA Intergenic Intergenic 193605 NM_028135 72160 Mm.281287 NM_028135 ENSMUSG00000026347 Tmem163 2610024A01Rik|SV31 transmembrane protein 163 0.019231 0.611465 -4.343577 chr16-304 chr16 13585487 13585643 + 25.4 NA promoter-TSS (NM_025653) promoter-TSS (NM_025653) -32 NM_025653 66598 Mm.223689 NM_025653 ENSMUSG00000079737 3110001I22Rik - RIKEN cDNA 3110001I22 gene 0.064103 0.605096 -3.550165 chr6-666 chr6 146989524 146989680 + 25.4 NA promoter-TSS (NM_025620) promoter-TSS (NM_025620) -104 NM_025620 66532 Mm.45888 NM_025620 ENSMUSG00000040121 Rep15 2210417D09Rik RAB15 effector protein 0.012821 0.471338 -1.842365 chr2-853 chr2 142294532 142294688 + 25.4 NA Intergenic Intergenic 298295 NM_001081133 16558 Mm.251934 NM_001081133 ENSMUSG00000038844 Kif16b 8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590 kinesin family member 16B 0.019231 0.324841 -7.970329 chr16-314 chr16 23904073 23904229 + 25.4 NA promoter-TSS (NM_009744) promoter-TSS (NM_009744) -190 NM_009744 12053 Mm.347398 NM_009744 ENSMUSG00000022508 Bcl6 Bcl5 B-cell leukemia/lymphoma 6 0.160256 0.789809 -4.373705 chr11-884 chr11 108796567 108796723 + 25.4 NA Intergenic Intergenic 60207 NM_015732 12006 Mm.71710 NM_015732 ENSMUSG00000000142 Axin2 Axi1|Axil|Conductin axin2 0.032051 0.547771 -0.727115 chr10-471 chr10 57511019 57511175 + 25.4 NA Intergenic Intergenic 28139 NM_020561 57319 Mm.2379 NM_020561 ENSMUSG00000019872 Smpdl3a 0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A sphingomyelin phosphodiesterase, acid-like 3A 0.012821 0.490446 -1.406640 chr5-965 chr5 129893149 129893305 + 25.4 NA Intergenic Intergenic -5694 NM_011846 23948 Mm.42047 NM_011846 ENSMUSG00000029436 Mmp17 MT4-MMP|MT4MMP|MTMMP4 matrix metallopeptidase 17 0.019231 0.458599 0.867767 chr5-868 chr5 97036163 97036319 + 25.4 NA intron (NM_013470, intron 1 of 12) intron (NM_013470, intron 1 of 12) 2555 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 0.000000 0.458599 7.957369 chr8-435 chr8 10302593 10302749 + 25.4 NA intron (NM_001081397, intron 2 of 35) intron (NM_001081397, intron 2 of 35) 148777 NM_001081397 244281 Mm.422761 NM_001081397 ENSMUSG00000039057 Myo16 C230040D10Rik|Gm1105|KIAA0865|mKIAA0865 myosin XVI 0.012821 0.471338 -1.249392 chr6-567 chr6 88449691 88449847 + 25.4 NA intron (NM_019685, intron 6 of 10) intron (NM_019685, intron 6 of 10) 18706 NM_019685 56505 Mm.42195 NM_019685 ENSMUSG00000030079 Ruvbl1 2510009G06Rik|Pontin52|Tip49a RuvB-like protein 1 0.000000 0.541401 1.344104 chr1-1152 chr1 193575228 193575384 + 25.4 NA Intergenic Intergenic -32089 NM_009579 22782 Mm.9024 NM_009579 ENSMUSG00000037434 Slc30a1 AI839647|C130040I11Rik|Znt1 solute carrier family 30 (zinc transporter), member 1 0.038462 0.573248 -6.404179 chr4-840 chr4 145334021 145334177 + 25.4 NA Intergenic Intergenic 91694 NM_001085522 433791 Mm.458096 XM_485487 ENSMUSG00000070605 Gm13251 OTTMUSG00000011097 predicted gene 13251 0.000000 0.401274 -9.434615 chr6-569 chr6 89344645 89344801 + 25.4 NA Intergenic Intergenic -16469 NM_008881 18844 Mm.3789 NM_008881 ENSMUSG00000030084 Plxna1 2600013D04Rik|KIAA4053|NOV|Plxn1|mKIAA4053 plexin A1 0.006410 0.554140 -6.790930 chr7-583 chr7 133475891 133476047 + 25.4 NA promoter-TSS (NM_178115) promoter-TSS (NM_178115) -48 NM_178115 214764 Mm.174044 NM_145995 ENSMUSG00000039990 2700050L05Rik AU022667|AW558805|Edrf1|MGC27934|MGC58090 RIKEN cDNA 2700050L05 gene 0.108974 0.662420 2.613551 chr18-337 chr18 50530802 50530958 + 25.4 NA Intergenic Intergenic 127182 NM_001004061 225497 Mm.329435 NM_001004061 ENSMUSG00000035420 Fam170a Gm93|Znfd family with sequence similarity 170, member A 0.000000 0.343949 1.552083 chr7-571 chr7 131153847 131154003 + 25.4 NA promoter-TSS (NM_026655) promoter-TSS (NM_026655) -79 NM_026655 68277 Mm.121122 NM_026655 ENSMUSG00000040177 2310057M21Rik 3110040E10Rik|AI429544 RIKEN cDNA 2310057M21 gene 0.057692 0.624204 -3.282901 chr15-411 chr15 85819969 85820125 + 25.4 NA intron (NM_009886, intron 1 of 34) intron (NM_009886, intron 1 of 34) 41496 NM_009886 12614 Mm.22680 NM_009886 ENSMUSG00000016028 Celsr1 Crsh|Scy|crash cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) 0.012821 0.445860 -6.877597 chr5-827 chr5 66882354 66882510 + 25.4 NA intron (NM_009686, intron 1 of 16) intron (NM_009686, intron 1 of 16) 15374 NM_009686 11787 Mm.480622 NM_009686 ENSMUSG00000029207 Apbb2 2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra amyloid beta (A4) precursor protein-binding, family B, member 2 0.006410 0.407643 1.396131 chr10-586 chr10 124487134 124487290 + 25.4 NA Intergenic Intergenic 244383 NM_011391 20503 Mm.29161 NM_011391 ENSMUSG00000020102 Slc16a7 4921534N07Rik|MGC143699|MGC143700|MGC143718|Mct2 solute carrier family 16 (monocarboxylic acid transporters), member 7 0.006410 0.331210 -5.973547 chr10-580 chr10 120752436 120752592 + 25.4 NA Intergenic Intergenic -15635 NM_029364 75612 Mm.207683 NM_029364 ENSMUSG00000034707 Gns 2610016K11Rik|AU042285|C87209|G6S|N28088 glucosamine (N-acetyl)-6-sulfatase 0.012821 0.458599 0.418066 chr5-865 chr5 96233053 96233209 + 25.4 NA Intergenic Intergenic 35891 NM_018866 55985 Mm.10116 NM_018866 ENSMUSG00000023078 Cxcl13 ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13 chemokine (C-X-C motif) ligand 13 0.006410 0.458599 1.697205 chr2-843 chr2 132269755 132269911 + 25.4 NA promoter-TSS (NM_001042671) promoter-TSS (NM_001042671) -144 NM_001042671 74182 Mm.448334 NM_001042671 ENSMUSG00000027346 Gpcpd1 2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 0.032051 0.624204 -2.996661 chr2-788 chr2 90262250 90262406 + 25.4 NA intron (NM_001135657, intron 7 of 25) intron (NM_001135657, intron 7 of 25) 17685 NM_001135657 19271 Mm.330393 NM_001135657 ENSMUSG00000025314 Ptprj AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1 protein tyrosine phosphatase, receptor type, J 0.000000 0.305732 1.331153 chr8-433 chr8 9889559 9889715 + 25.4 NA Intergenic MLT2C2|LTR|ERVL 86658 NM_176953 319583 Mm.80584 NM_176953 ENSMUSG00000049717 Lig4 5830471N16Rik|tiny ligase IV, DNA, ATP-dependent 0.000000 0.394904 0.930435 chr8-469 chr8 24271030 24271186 + 25.4 NA promoter-TSS (NM_029505) promoter-TSS (NM_029505) 91 NM_029505 64933 Mm.390023 NM_001122820 ENSMUSG00000031539 Ap3m2 5830445E16Rik|AP-3B adaptor-related protein complex 3, mu 2 subunit 0.108974 0.681529 -3.806183 chr3-482 chr3 25549013 25549169 + 25.4 NA Intergenic Intergenic 795289 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.006410 0.426752 -8.712008 chr15-311 chr15 7018875 7019031 + 25.4 NA Intergenic Intergenic -57833 NM_001113386 16880 Mm.149720 NM_001113386 ENSMUSG00000054263 Lifr A230075M04Rik|AW061234|LIF leukemia inhibitory factor receptor 0.012821 0.515924 -4.357871 chr1-904 chr1 66161484 66161640 + 25.4 NA intron (NM_001039934, intron 2 of 14) intron (NM_001039934, intron 2 of 14) 53026 NM_001039934 17756 Mm.256966 NM_001039934 ENSMUSG00000015222 Mtap2 MAP-2|MAP2|Mtap-2 microtubule-associated protein 2 0.019231 0.490446 -8.583825 chr5-1007 chr5 141285634 141285790 + 25.4 NA Intergenic MLT1H|LTR|MaLR -32642 NM_175362 108723 Mm.46187 NM_175362 ENSMUSG00000036526 Card11 0610008L17Rik|2410011D02Rik|BIMP3|CARMA1 caspase recruitment domain family, member 11 0.000000 0.490446 -4.386746 chr19-191 chr19 4495307 4495463 + 25.4 NA Intergenic Intergenic 3198 NM_027237 69861 Mm.282978 NM_027237 ENSMUSG00000042041 2010003K11Rik - RIKEN cDNA 2010003K11 gene 0.000000 0.522293 -0.564802 chr5-786 chr5 36694702 36694858 + 25.4 NA intron (NM_030889, intron 1 of 26) intron (NM_030889, intron 1 of 26) 20454 NM_030889 81840 Mm.34113 NM_030889 ENSMUSG00000029093 Sorcs2 N28137|mKIAA1329 sortilin-related VPS10 domain containing receptor 2 0.019231 0.592357 -1.434065 chr2-672 chr2 18980072 18980228 + 25.4 NA Intergenic Intergenic 64078 NR_024323 74629 Mm.117687 NR_024323 4930426L09Rik - RIKEN cDNA 4930426L09 gene 0.012821 0.414013 -1.145068 chr11-860 chr11 101475322 101475478 + 25.4 NA Intergenic Intergenic -6230 NM_025404 80981 Mm.477253 XM_001471772 ENSMUSG00000034936 Arl4d 1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5|MGC28743 ADP-ribosylation factor-like 4D 0.012821 0.496815 -1.938900 chr4-625 chr4 32616620 32616776 + 25.4 NA Intergenic Intergenic -129349 NM_001109661 12014 Mm.479952 NM_001109661 ENSMUSG00000040270 Bach2 E030004N02Rik|MGC117590 BTB and CNC homology 2 0.012821 0.394904 -3.561949 chr9-684 chr9 77440994 77441150 + 25.4 NA exon (NM_172925, exon 3 of 3) exon (NM_172925, exon 3 of 3) 18648 NM_172925 244923 Mm.138238 NM_172925 ENSMUSG00000044938 Klhl31 9830147P19Rik|D930047P17Rik|Kbtbd1 kelch-like 31 (Drosophila) 0.179487 0.745223 -3.978670 chr10-536 chr10 86918734 86918890 + 25.4 NA Intergenic Intergenic 4647 NM_008553 17172 Mm.136217 NM_008553 ENSMUSG00000020052 Ascl1 AI225900|ASH1|Mash1|bHLHa46 achaete-scute complex homolog 1 (Drosophila) 0.025641 0.484076 -9.805377 chr7-549 chr7 121269481 121269637 + 25.4 NA intron (NM_001081327, intron 1 of 1) intron (NM_001081327, intron 1 of 1) 86116 NM_001081327 195646 Mm.247449 NM_001081327 ENSMUSG00000046321 Hs3st2 6430516N12Rik|A830061E14Rik|AW491345 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 0.025641 0.439490 -5.774172 chr5-1036 chr5 149066305 149066461 + 25.4 NA Intergenic Intergenic 14195 NR_028285 70138 Mm.417834 XM_001473363 2210417A02Rik AV081004 RIKEN cDNA 2210417A02 gene 0.032051 0.503185 -3.407889 chr1-1161 chr1 196447602 196447758 + 25.4 NA intron (NM_008882, intron 5 of 31) intron (NM_008882, intron 5 of 31) 127128 NM_008882 18845 Mm.2251 NM_008882 ENSMUSG00000026640 Plxna2 2810428A13Rik|AA589422|AW457381|OCT|Plxn2|mKIAA0463 plexin A2 0.025641 0.490446 -5.958774 chr5-773 chr5 33050804 33050960 + 25.4 NA Intergenic Intergenic 51601 NM_177298 320951 Mm.273765 NM_177298 ENSMUSG00000023452 Pisd 9030221M09Rik phosphatidylserine decarboxylase 0.025641 0.566879 -4.290055 chr2-775 chr2 75604057 75604213 + 25.4 NA Intergenic Intergenic -28880 NM_172666 228061 Mm.31227 NM_172666 ENSMUSG00000042410 Agps 5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy alkylglycerone phosphate synthase 0.012821 0.490446 0.100956 chr10-478 chr10 61152496 61152652 + 25.4 NA intron (NM_207000, intron 2 of 8) intron (NM_207000, intron 2 of 8) 26647 NM_207000 404634 Mm.272870 NM_207000 ENSMUSG00000020086 H2afy2 MGC130227|MGC130228|macroH2A2 H2A histone family, member Y2 0.019231 0.547771 -5.366155 chr7-399 chr7 3739934 3740090 + 25.4 NA promoter-TSS (NM_172736) promoter-TSS (NM_172736) 1 NR_033548 100037396 Mm.447887 NR_033548 D030047H15Rik Gm15924|OTTMUSG00000027889 RIKEN cDNA D030047H15 gene 0.115385 0.656051 -3.829224 chr13-355 chr13 5728213 5728369 + 25.4 NA Intergenic Intergenic -132443 NM_011803 23849 Mm.275036 NM_011803 ENSMUSG00000000078 Klf6 AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9 Kruppel-like factor 6 0.006410 0.426752 1.979728 chr1-946 chr1 78640325 78640481 + 25.4 NA Intergenic Intergenic -55569 NM_021342 57814 Mm.24386 NM_021342 ENSMUSG00000047330 Kcne4 AW487937|MiRP3 potassium voltage-gated channel, Isk-related subfamily, gene 4 0.006410 0.445860 -1.562205 chr8-444 chr8 11923221 11923377 + 25.4 NA Intergenic Intergenic 82807 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.012821 0.566879 0.406886 chr6-492 chr6 39894188 39894344 + 25.4 NA Intergenic Intergenic -145593 NM_001004182 434008 Mm.130209 NM_001004182 ENSMUSG00000057716 Gm5567 EG434008 predicted gene 5567 0.006410 0.420382 -8.288051 chr9-571 chr9 27056194 27056350 + 25.4 NA intron (NM_001033323, intron 1 of 14) intron (NM_001033323, intron 1 of 14) 7599 NM_001129787 235086 Mm.335029 NM_001033323 ENSMUSG00000034275 Igsf9b Gm508|KIAA1030|mKIAA1030 immunoglobulin superfamily, member 9B 0.012821 0.573248 0.666867 chr18-386 chr18 84220110 84220266 + 25.4 NA 5' UTR (NM_001081300, exon 1 of 2) 5' UTR (NM_001081300, exon 1 of 2) 567 NM_001081300 110796 Mm.102136 NM_001081300 ENSMUSG00000046982 Tshz1 5730407I04Rik|D18Bwg1409e|KIAA4206|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1 teashirt zinc finger family member 1 0.057692 0.566879 -4.605207 chr12-595 chr12 65992483 65992639 + 25.4 NA promoter-TSS (NM_013902) promoter-TSS (NM_013902) -18 NM_013902 30795 Mm.28480 NM_013902 ENSMUSG00000020949 Fkbp3 25kDa|FKBP-3|FKBP25 FK506 binding protein 3 0.102564 0.726115 -7.765210 chr8-604 chr8 127289995 127290151 + 25.4 NA intron (NM_171824, intron 1 of 6) intron (NM_171824, intron 1 of 6) 29953 NM_171824 209966 Mm.234233 NM_171824 ENSMUSG00000050751 Pgbd5 2900019M05Rik|AI854313 piggyBac transposable element derived 5 0.012821 0.535032 -3.719918 chr4-755 chr4 108412388 108412544 + 25.4 NA intron (NM_023537, intron 2 of 4) intron (NM_023537, intron 2 of 4) 35465 NM_023537 69908 Mm.41580 NM_023537 ENSMUSG00000003411 Rab3b 2610528C18Rik RAB3B, member RAS oncogene family 0.012821 0.452229 -6.402654 chr15-363 chr15 56497680 56497836 + 25.4 NA exon (NM_008216, exon 4 of 4) exon (NM_008216, exon 4 of 4) -22268 NR_002874 594843 NR_002874 Has2as EG594843|Hasnt HAS2 antisense RNA (non-protein coding) 0.006410 0.458599 -8.191494 chr12-676 chr12 92592396 92592552 + 25.4 NA Intergenic Intergenic -337760 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.012821 0.394904 -1.290818 chr5-880 chr5 101923877 101924033 + 25.4 NA Intergenic Intergenic -18942 NM_144955 18096 Mm.193072 NM_144955 ENSMUSG00000035187 Nkx6-1 NKX6A|Nkx6.1 NK6 homeobox 1 0.012821 0.375796 -2.511970 chr12-743 chr12 117379483 117379639 + 25.4 NA intron (NM_011215, intron 11 of 22) intron (NM_011215, intron 11 of 22) 213717 NR_033538 100038689 Mm.445351 NR_033538 Gm10421 ENSMUSG00000072792 predicted gene 10421 0.006410 0.477707 0.333490 chr11-636 chr11 3023776 3023932 + 25.4 NA promoter-TSS (NR_003517) promoter-TSS (NR_003517) -169 NR_003517 236604 Mm.247625 XM_001471470 Pisd-ps1 - phosphatidylserine decarboxylase, pseudogene 1 0.032051 0.566879 -4.162314 chr3-576 chr3 102014182 102014338 + 25.4 NA intron (NM_001039371, intron 4 of 11) intron (NM_001039371, intron 4 of 11) 39254 NM_001039371 242126 Mm.90204 XM_001002464 ENSMUSG00000033147 Slc22a15 2610034P21Rik|4930477M19|A530052I06Rik|BB219042 solute carrier family 22 (organic anion/cation transporter), member 15 0.019231 0.452229 -4.529511 chr2-905 chr2 170023278 170023434 + 25.4 NA Intergenic Intergenic 95694 NM_001164369 76960 Mm.240850 NM_001164369 ENSMUSG00000013523 Bcas1 2210416M21Rik|9030223A09Rik|AI841227|NABC1 breast carcinoma amplified sequence 1 0.006410 0.464968 -4.986521 chr6-509 chr6 52509860 52510016 + 25.4 NA intron (NM_145567, intron 4 of 7) intron (NM_145567, intron 4 of 7) 59940 NM_145567 58875 Mm.286458 NM_145567 ENSMUSG00000029776 Hibadh 6430402H10Rik|AI265272 3-hydroxyisobutyrate dehydrogenase 0.012821 0.484076 -2.629235 chr11-855 chr11 100755793 100755949 + 25.4 NA promoter-TSS (NM_011486) promoter-TSS (NM_011486) -270 NM_213660 20848 Mm.249934 NM_011486 ENSMUSG00000004040 Stat3 1110034C02Rik|AW109958|Aprf signal transducer and activator of transcription 3 0.064103 0.566879 -3.699957 chrX-90 chrX 42427272 42427428 + 25.4 NA Intergenic Lx3C|LINE|L1 -146283 NM_028514 73360 Mm.60929 NM_028514 ENSMUSG00000046615 Actrt1 1700061J02Rik|Arp-T1|MGC144637|MGC144638 actin-related protein T1 0.000000 0.350318 -2.107735 chr13-445 chr13 70232082 70232238 + 25.4 NA Intergenic Intergenic -24891 NM_001145162 76980 Mm.478108 XM_127466 Ube2ql1 3110006E14Rik ubiquitin-conjugating enzyme E2Q family-like 1 0.012821 0.496815 -3.039560 chr1-1004 chr1 111760422 111760578 + 25.4 NA Intergenic Intergenic -50783 NM_172853 241201 Mm.213407 NM_172853 ENSMUSG00000026312 Cdh7 9330156F07Rik|CDH7L1|MGC118246 cadherin 7, type 2 0.019231 0.452229 -5.811385 chr6-583 chr6 91439016 91439172 + 25.4 NA promoter-TSS (NM_133928) promoter-TSS (NM_133928) -160 NM_028766 74122 Mm.38801 NM_028766 ENSMUSG00000030095 Tmem43 1200015A22Rik|LUMA transmembrane protein 43 0.070513 0.509554 -1.559555 chr4-778 chr4 123234724 123234880 + 25.4 NA Intergenic Intergenic -14313 NM_001030274 595136 Mm.42805 NM_001030274 ENSMUSG00000028648 Ndufs5 AI256693 NADH dehydrogenase (ubiquinone) Fe-S protein 5 0.006410 0.452229 9.442584 chr1-935 chr1 75134635 75134791 + 25.4 NA intron (NM_008985, intron 19 of 22) intron (NM_008985, intron 19 of 22) 12643 NM_008985 19275 Mm.2902 NM_008985 ENSMUSG00000026204 Ptprn IA-2|KIAA4064|mIA-A|mKIAA4064 protein tyrosine phosphatase, receptor type, N 0.019231 0.554140 -2.627730 chr19-270 chr19 61144153 61144309 + 25.4 NA intron (NM_018869, intron 13 of 15) intron (NM_018869, intron 13 of 15) 86741 NM_001177513 633057 Mm.426097 XM_001002874 Gm7102 EG633057 predicted gene 7102 0.000000 0.414013 -6.737555 chr2-688 chr2 27405039 27405195 + 25.4 NA Intergenic Intergenic 67962 NM_080848 140858 Mm.28265 NM_080848 ENSMUSG00000026917 Wdr5 2410008O07Rik|AA408785|AA960360|Big|Big-3 WD repeat domain 5 0.006410 0.484076 4.699008 chr13-468 chr13 99755796 99755952 + 25.4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -18307 NM_026685 68344 Mm.28766 NM_026685 ENSMUSG00000046082 Tmem174 0610009B10Rik|AA986094 transmembrane protein 174 0.006410 0.439490 -6.554752 chr9-643 chr9 59923368 59923524 + 25.4 NA intron (NM_001040426, intron 7 of 17) intron (NM_001040426, intron 7 of 17) 15780 NM_172444 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.025641 0.484076 3.170643 chr7-603 chr7 141843585 141843741 + 25.4 NA intron (NM_028308, intron 1 of 4) intron (NM_028308, intron 1 of 4) 26761 NM_028308 101513 Mm.53259 NM_028308 ENSMUSG00000025147 2700078K21Rik 1110017M21Rik|AI256456|Mmh|Mob2 RIKEN cDNA 2700078K21 gene 0.006410 0.535032 5.594611 chr11-830 chr11 94360124 94360280 + 25.4 NA exon (NM_001013381, exon 5 of 9) exon (NM_001013381, exon 5 of 9) 5095 NM_001013381 237926 Mm.342275 NM_001013381 ENSMUSG00000039096 Rsad1 B430319G23|BC056485 radical S-adenosyl methionine domain containing 1 0.038462 0.535032 0.643481 chr9-727 chr9 107567468 107567624 + 25.4 NA intron (NM_011349, intron 1 of 17) intron (NM_011349, intron 1 of 17) 1030 NM_011349 20350 Mm.12903 NM_011349 ENSMUSG00000034684 Sema3f Sema4|Semak sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F 0.134615 0.751592 3.491362 chr1-1132 chr1 185752217 185752373 + 25.4 NA intron (NM_022019, intron 2 of 3) intron (NM_022019, intron 2 of 3) 16579 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5 dual specificity phosphatase 10 0.006410 0.464968 1.301834 chr13-444 chr13 70217808 70217964 + 25.4 NA Intergenic Intergenic -10617 NM_001145162 76980 Mm.478108 XM_127466 Ube2ql1 3110006E14Rik ubiquitin-conjugating enzyme E2Q family-like 1 0.006410 0.528662 -4.395902 chr7-569 chr7 130426456 130426612 + 25.4 NA intron (NM_001004468, intron 3 of 21) intron (NM_001004468, intron 3 of 21) -57169 NM_021314 57752 Mm.86322 NM_001004468 ENSMUSG00000030852 Tacc2 KIAA4180|mKIAA4180 transforming, acidic coiled-coil containing protein 2 0.012821 0.547771 -7.409811 chr2-761 chr2 70856243 70856399 + 25.4 NA promoter-TSS (NM_198005) promoter-TSS (NM_198005) 124 NM_145524 228019 Mm.479581 NM_001110512 ENSMUSG00000041975 Mettl8 BC004636|MGC67805|MGC7995|Tip methyltransferase like 8 0.044872 0.624204 -5.007529 chrX-99 chrX 89319976 89320132 + 25.4 NA Intergenic Intergenic -219310 NM_007492 11878 Mm.275547 NM_007492 ENSMUSG00000035277 Arx - aristaless related homeobox 0.000000 0.477707 3.570585 chr2-665 chr2 13626923 13627079 + 25.4 NA intron (NM_145838, intron 3 of 7) intron (NM_145838, intron 3 of 7) 84273 NM_145838 241230 Mm.393036 NM_145838 ENSMUSG00000003418 St8sia6 1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 0.006410 0.337580 -4.067188 chr11-642 chr11 3254158 3254314 + 25.4 NA intron (NM_010718, intron 7 of 15) intron (NM_010718, intron 7 of 15) 1908 NM_001034030 16886 Mm.442189 NM_001034030 ENSMUSG00000020451 Limk2 9430059K01|A930024P04Rik|C85310|Limk2a|Limk2b LIM motif-containing protein kinase 2 0.006410 0.439490 -0.832962 chr7-453 chr7 64607227 64607383 + 25.4 NA intron (NM_007461, intron 6 of 14) intron (NM_007461, intron 6 of 14) 144685 NM_023239 66647 Mm.19944 NM_023239 ENSMUSG00000070520 Ndnl2 5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|mage-g1 necdin-like 2 0.012821 0.585987 -0.749267 chr17-396 chr17 7121677 7121833 + 25.4 NA intron (NM_011299, intron 11 of 20) intron (NM_011299, intron 11 of 20) -52599 NM_011553 21461 Mm.432087 NM_011553 ENSMUSG00000071322 Tcp10b D17Leh66B|D17Leh66ba|ENSMUSG00000071322|Gm10326|T66B-a|Tcp-10b|Tcp-10bt t-complex protein 10b 0.012821 0.515924 0.270436 chr7-599 chr7 141411790 141411946 + 25.4 NA Intergenic Intergenic -1631 NM_007459 11772 Mm.253090 NM_007459 ENSMUSG00000002957 Ap2a2 2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25 adaptor protein complex AP-2, alpha 2 subunit 0.006410 0.452229 -6.682477 chr6-606 chr6 99934408 99934564 + 25.4 NA Intergenic Intergenic -242631 NM_001170419 50501 Mm.87365 NM_001037539 ENSMUSG00000030069 Prok2 Bv8|PK2|Prok1 prokineticin 2 0.006410 0.566879 -5.808552 chr1-861 chr1 39700924 39701080 + 25.4 NA Intergenic (CTGTG)n|Simple_repeat|Simple_repeat -35467 NM_001145660 619289 Mm.334107 XM_001478116 ENSMUSG00000057173 Rfx8 4933400N17Rik regulatory factor X 8 0.000000 0.566879 0.652260 chr15-441 chr15 101638167 101638323 + 25.4 NA TTS (NM_010668) TTS (NM_010668) -7879 NM_212485 223915 Mm.291498 NM_212485 ENSMUSG00000063661 Krt73 BC067067|Kb36 keratin 73 0.000000 0.509554 -1.406640 chr16-383 chr16 92290107 92290263 + 25.4 NA intron (NM_001081549, intron 1 of 3) intron (NM_001081549, intron 1 of 3) -1249 NM_019466 54720 Mm.265744 NM_001081549 ENSMUSG00000022951 Rcan1 2410048A02Rik|AA408855|AI429645|AL024459|AV028423|Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1 regulator of calcineurin 1 0.025641 0.439490 1.073377 chr15-347 chr15 37704831 37704987 + 25.4 NA intron (NM_134094, intron 1 of 6) intron (NM_134094, intron 1 of 6) 31680 NM_001170866 52589 Mm.283370 NM_001170866 ENSMUSG00000051359 Ncald AI848120|D030020D09Rik|D15Ertd412e neurocalcin delta 0.006410 0.356688 -2.466514 chr15-427 chr15 95437098 95437254 + 25.4 NA Intergenic Intergenic 45629 NM_207533 223843 Mm.152937 NM_207533 ENSMUSG00000045608 Dbx2 9430056A22Rik|9630005K15|AI846217|Gm1229 developing brain homeobox 2 0.006410 0.439490 -5.602917 chr5-816 chr5 64309033 64309189 + 25.4 NA Intergenic Intergenic -61079 NM_145923 100532 Mm.480645 NM_145923 ENSMUSG00000047881 Rell1 AA536743 RELT-like 1 0.019231 0.445860 -4.620369 chr8-544 chr8 81804403 81804559 + 25.4 NA Intergenic CT-rich|Low_complexity|Low_complexity -87257 NM_030145 78651 Mm.28694 NM_001191004 ENSMUSG00000031683 Lsm6 1500031N17Rik|2410088K19Rik|AI747288|MGC117708 LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 0.000000 0.611465 -10.010014 chr18-303 chr18 23856987 23857143 + 25.4 NA Intergenic Intergenic -38277 NM_001162942 212307 Mm.132237 NM_001162941 ENSMUSG00000024277 Mapre2 AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 0.012821 0.401274 -1.080967 chr3-634 chr3 138770277 138770433 + 25.4 NA intron (NM_019571, intron 1 of 7) intron (NM_019571, intron 1 of 7) 90774 NM_019571 56224 Mm.31927 NM_019571 ENSMUSG00000028152 Tspan5 2810455A09Rik|4930505M03Rik|AU024142|NET-4|Tm4sf9 tetraspanin 5 0.019231 0.401274 -3.541013 chr9-758 chr9 120708789 120708945 + 25.4 NA Intergenic Intergenic -73230 NM_007614 12387 Mm.291928 NM_001165902 ENSMUSG00000006932 Ctnnb1 Catnb|Mesc catenin (cadherin associated protein), beta 1 0.006410 0.452229 -3.816614 chr11-686 chr11 23155333 23155489 + 25.4 NA promoter-TSS (NM_134014) promoter-TSS (NM_134014) -629 NM_001035226 103573 Mm.217547 NM_001035226 ENSMUSG00000020290 Xpo1 AA420417|Crm1|Exp1 exportin 1, CRM1 homolog (yeast) 0.102564 0.713376 -8.293334 chr2-698 chr2 29946543 29946699 + 25.4 NA promoter-TSS (NM_178694) promoter-TSS (NM_178694) -158 NM_178694 227693 Mm.479984 NM_178694 ENSMUSG00000039686 Zer1 C230075L19Rik|Zyg11bl zer-1 homolog (C. elegans) 0.076923 0.662420 -4.589764 chr16-329 chr16 30147215 30147371 + 25.4 NA Intergenic Intergenic 39986 NM_027904 71756 Mm.290614 NM_027904 ENSMUSG00000023176 Cpn2 1300018K11Rik carboxypeptidase N, polypeptide 2 0.019231 0.611465 -6.164580 chr1-847 chr1 36540822 36540978 + 25.4 NA intron (NM_001126046, intron 10 of 14) intron (NM_001126046, intron 10 of 14) -3022 NM_027957 381337 Mm.477231 XM_889674 ENSMUSG00000046337 Fam178b 1700024G10Rik|Gm990|MGC141033|MGC60970 family with sequence similarity 178, member B 0.006410 0.554140 -3.374737 chr18-376 chr18 80712565 80712721 + 25.4 NA Intergenic Intergenic -6038 NR_028424 100039348 Mm.254722 NR_028424 Gm2176 A430076E10Rik glucosamine-6-phosphate deaminase 1 pseudogene 0.019231 0.547771 -2.395482 chr7-592 chr7 140803108 140803264 + 25.4 NA Intergenic B3A|SINE|B2 -1627 NM_053088 73835 Mm.389989 NM_053088 ENSMUSG00000025489 Ifitm5 1110003J06Rik|AW213665|Bril|Hrmp1|Hrtm1|MGC118415 interferon induced transmembrane protein 5 0.019231 0.554140 -3.579683 chr6-521 chr6 54336461 54336617 + 25.4 NA intron (NR_033635, intron 1 of 13) intron (NR_033635, intron 1 of 13) 23260 NR_033635 100042056 Mm.461053 XM_001474606 9130019P16Rik 6430501H15Rik|OTTMUSG00000023151 RIKEN cDNA 9130019P16 gene 0.012821 0.445860 -0.804897 chr2-679 chr2 25516679 25516835 + 25.4 NA Intergenic Intergenic -5325 NM_153558 227627 Mm.44630 NM_153558 ENSMUSG00000062061 Lcn13 BC027556|MGC41397 lipocalin 13 0.000000 0.503185 -6.544198 chr1-1012 chr1 121319651 121319807 + 25.4 NA intron (NM_022327, intron 1 of 4) intron (NM_022327, intron 1 of 4) 12599 NM_022327 64143 Mm.27832 NM_022327 ENSMUSG00000004451 Ralb 5730472O18Rik v-ral simian leukemia viral oncogene homolog B (ras related) 0.019231 0.598726 -2.506721 chr17-515 chr17 50936627 50936783 + 25.4 NA Intergenic Intergenic -292427 NM_028162 72238 Mm.120650 NM_028162 ENSMUSG00000023923 Tbc1d5 1600014N05Rik|KIAA0210|mKIAA0210 TBC1 domain family, member 5 0.019231 0.509554 -4.970586 chr11-915 chr11 118324963 118325119 + 25.4 NA intron (NM_001024931, intron 5 of 14) intron (NM_001024931, intron 5 of 14) 31992 NM_172573 217364 Mm.473963 NM_172573 ENSMUSG00000033857 Engase C130099A03|D230014K01Rik endo-beta-N-acetylglucosaminidase 0.012821 0.554140 0.822013 chr15-394 chr15 78232846 78233002 + 25.4 NA exon (NM_009437, exon 1 of 2) exon (NM_009437, exon 1 of 2) 190 NM_009437 22117 Mm.15312 NM_009437 ENSMUSG00000044986 Tst Rhodanese thiosulfate sulfurtransferase, mitochondrial 0.083333 0.598726 1.191027 chr6-613 chr6 108453296 108453452 + 25.4 NA intron (NM_010585, intron 49 of 61) intron (NM_010585, intron 49 of 61) -173031 NM_011498 20893 Mm.2436 NM_011498 ENSMUSG00000030103 Bhlhe40 Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14 basic helix-loop-helix family, member e40 0.044872 0.496815 -2.353756 chr6-542 chr6 72458049 72458205 + 25.4 NA Intergenic Intergenic -15820 NM_007599 12332 Mm.18626 NM_001042534 ENSMUSG00000056737 Capg gCap39|mbh1 capping protein (actin filament), gelsolin-like 0.012821 0.522293 3.064796 chr7-485 chr7 89520004 89520160 + 25.4 NA intron (NM_181407, intron 1 of 13) intron (NM_181407, intron 1 of 13) 12073 NM_181407 109264 Mm.334011 NM_181407 ENSMUSG00000030621 Me3 1700020C08Rik|B230207H15Rik|MGC107389 malic enzyme 3, NADP(+)-dependent, mitochondrial 0.000000 0.401274 -1.072511 chr1-1101 chr1 168215527 168215683 + 25.4 NA promoter-TSS (NM_030245) promoter-TSS (NM_030245) -236 NM_030245 27878 Mm.192094 NM_030245 ENSMUSG00000026563 Tada1 2900026B15Rik|D1Ertd251e|Staf42|Tada1l transcriptional adaptor 1 0.096154 0.687898 -3.579683 chr12-669 chr12 88037038 88037194 + 25.4 NA promoter-TSS (NM_153415) promoter-TSS (NM_153415) -111 NM_153415 217734 Mm.388249 NM_153415 ENSMUSG00000034126 Pomt2 A830009D15Rik|AW046274 protein-O-mannosyltransferase 2 0.102564 0.636943 -4.337398 chr12-577 chr12 51388940 51389096 + 25.4 NA intron (NM_008858, intron 2 of 18) intron (NM_008858, intron 2 of 18) 182212 NM_008858 18760 Mm.133719 NM_008858 ENSMUSG00000002688 Prkd1 PKD|PKD1|Pkcm|Prkcm protein kinase D1 0.006410 0.401274 -2.999416 chr6-638 chr6 116333622 116333778 + 25.4 NA intron (NM_027920, intron 1 of 6) intron (NM_027920, intron 1 of 6) 29959 NM_027920 71779 Mm.27064 NM_027920 ENSMUSG00000025702 March8 1300017E09Rik|Mir membrane-associated ring finger (C3HC4) 8 0.025641 0.458599 -2.290903 chrX-105 chrX 103660298 103660454 + 25.4 NA Intergenic Lx9|LINE|L1 -54297 NM_008409 16431 Mm.193 NM_008409 ENSMUSG00000031239 Itm2a AW108051|E25|Itm2 integral membrane protein 2A 0.000000 0.331210 -6.155514 chr4-759 chr4 108720243 108720399 + 25.4 NA Intergenic Intergenic -13242 NM_001033226 108802 Mm.318248 NM_001033226 ENSMUSG00000028558 Calr4 4933403L16Rik|AU017583 calreticulin 4 0.000000 0.433121 -7.735106 chr3-539 chr3 84900267 84900423 + 25.4 NA Intergenic CpG -1158 NM_001177773 50754 Mm.196475 NM_001177773 ENSMUSG00000028086 Fbxw7 1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10 F-box and WD-40 domain protein 7 0.121795 0.726115 -3.816614 chr1-998 chr1 107128096 107128252 + 25.4 NA intron (NM_001160368, intron 1 of 1) intron (NM_001160368, intron 1 of 1) 56083 NM_178779 320311 Mm.389162 NM_001160368 ENSMUSG00000047496 Rnf152 A930029B02Rik ring finger protein 152 0.000000 0.286624 -0.334808 chr10-515 chr10 80333075 80333231 + 25.4 NA promoter-TSS (NM_008655) promoter-TSS (NM_008655) -66 NM_008655 17873 Mm.1360 NM_008655 ENSMUSG00000015312 Gadd45b AI323528|Myd118 growth arrest and DNA-damage-inducible 45 beta 0.089744 0.630573 -5.180315 chr1-1118 chr1 176744429 176744585 + 25.4 NA intron (NM_011825, intron 1 of 1) intron (NM_011825, intron 1 of 1) 13987 NM_011825 23893 Mm.25760 NM_011825 ENSMUSG00000050069 Grem2 Gremlin2|Prdc gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis) 0.019231 0.484076 0.550291 chr6-562 chr6 86590905 86591061 + 25.4 NA Intergenic Intergenic -2824 NM_026414 67855 Mm.183043 NM_026414 ENSMUSG00000033508 Asprv1 2300003P22Rik|AA986851|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 0.019231 0.522293 -3.203599 chr4-867 chr4 151510930 151511086 + 25.4 NA Intergenic MTEb|LTR|MaLR -30331 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.051282 0.573248 -1.152112 chr12-722 chr12 111049114 111049270 + 25.4 NA promoter-TSS (NM_030238) promoter-TSS (NM_030238) -9 NM_030238 13424 Mm.181430 NM_030238 ENSMUSG00000018707 Dync1h1 9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325 dynein cytoplasmic 1 heavy chain 1 0.173077 0.770701 -8.824255 chr15-382 chr15 72437651 72437807 + 25.4 NA intron (NM_029640, intron 20 of 21) intron (NM_029640, intron 20 of 21) -64194 NM_001033876 223604 Mm.386856 NM_001033876 ENSMUSG00000036760 Kcnk9 Task3 potassium channel, subfamily K, member 9 0.000000 0.490446 -3.612518 chr14-257 chr14 55622346 55622502 + 25.4 NA promoter-TSS (NM_023773) promoter-TSS (NM_023773) 67 NM_023773 75339 Mm.474486 NM_023773 ENSMUSG00000079184 Mphosph8 1500035L22Rik|4930548G07Rik|AU040635 M-phase phosphoprotein 8 0.141026 0.694268 -8.582590 chr6-632 chr6 115500314 115500470 + 25.4 NA Intergenic Intergenic -9930 NM_199033 381802 Mm.291208 NM_199033 ENSMUSG00000042389 Tsen2 AU067695|MGC69703 tRNA splicing endonuclease 2 homolog (S. cerevisiae) 0.012821 0.522293 -9.279052 chr4-648 chr4 46690787 46690943 + 25.4 NA intron (NM_001081141, intron 17 of 18) intron (NM_001081141, intron 17 of 18) -19566 NM_198664 381605 Mm.331595 NM_198664 ENSMUSG00000039813 Tbc1d2 A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1 TBC1 domain family, member 2 0.025641 0.490446 0.384343 chr9-659 chr9 65621873 65622029 + 25.4 NA intron (NM_172536, intron 1 of 9) intron (NM_172536, intron 1 of 9) 3619 NM_172536 214812 Mm.477320 NM_172536 ENSMUSG00000040524 Zfp609 9830165N24|BC016271|Znf609|mKIAA0295 zinc finger protein 609 0.032051 0.528662 2.135292 chr11-740 chr11 62421134 62421290 + 25.4 NA TTS (NR_028541) TTS (NR_028541) 488 NR_028541 100217444 NR_028541 Snord65 MBII-135 small nucleolar RNA, C/D box 65 0.006410 0.503185 -6.366156 chr9-600 chr9 45592747 45592903 + 25.4 NA intron (NM_001145947, intron 1 of 7) intron (NM_001145947, intron 1 of 7) 3302 NM_011792 23821 Mm.24044 NM_001145947 ENSMUSG00000032086 Bace1 C76936 beta-site APP cleaving enzyme 1 0.006410 0.420382 -9.162718 chr12-696 chr12 105153261 105153417 + 25.4 NA promoter-TSS (NM_148948) promoter-TSS (NM_148948) -337 NM_148948 192119 Mm.21135 NM_148948 ENSMUSG00000041415 Dicer1 1110006F08Rik|D12Ertd7e|mKIAA0928 Dicer1, Dcr-1 homolog (Drosophila) 0.089744 0.681529 2.873756 chr16-293 chr16 6846671 6846827 + 25.4 NA intron (NM_021477, intron 5 of 16) intron (NM_021477, intron 5 of 16) -138406 NM_183188 268859 Mm.434732 NM_021477 ENSMUSG00000008658 A2bp1 A2bp|Hrnbp1|fox-1 ataxin 2 binding protein 1 0.000000 0.426752 -2.529865 chr17-474 chr17 33519769 33519925 + 25.4 NA promoter-TSS (NM_007829) promoter-TSS (NM_007829) -104 NM_007829 13163 Mm.271809 NM_007829 ENSMUSG00000002307 Daxx MGC150289 Fas death domain-associated protein 0.121795 0.719745 -2.567052 chr12-746 chr12 118115426 118115582 + 25.4 NA intron (NM_175930, intron 11 of 27) intron (NM_175930, intron 11 of 27) 157017 NM_175930 217944 Mm.227642 NM_175930 ENSMUSG00000041992 Rapgef5 4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef Rap guanine nucleotide exchange factor (GEF) 5 0.000000 0.407643 2.247545 chr17-457 chr17 29009413 29009569 + 25.4 NA intron (NM_030561, intron 3 of 8) intron (NM_030561, intron 3 of 8) 13692 NM_030561 80748 Mm.290116 NM_030561 ENSMUSG00000052712 BC004004 2400006G15Rik|MGC7550 cDNA sequence BC004004 0.032051 0.541401 -6.465692 chr11-784 chr11 79391572 79391728 + 25.4 NA intron (NM_010897, intron 57 of 57) intron (NM_010897, intron 57 of 57) -15756 NM_175543 268451 Mm.473716 NM_175543 ENSMUSG00000017639 Rab11fip4 A730072L08Rik|KIAA1821|RAB11-FIP4|mKIAA1821 RAB11 family interacting protein 4 (class II) 0.019231 0.515924 -4.419241 chr12-692 chr12 103106398 103106554 + 25.4 NA promoter-TSS (NM_172584) promoter-TSS (NM_172584) -557 NM_172584 217837 Mm.291222 NM_172584 ENSMUSG00000057963 Itpk1 BC031182 inositol 1,3,4-triphosphate 5/6 kinase 0.076923 0.668790 -1.878021 chr11-648 chr11 3833955 3834111 + 25.4 NA Intergenic Intergenic -1952 NM_001130458 21452 Mm.20948 NM_001130458 ENSMUSG00000020432 Tcn2 AW208754|Tcn-2 transcobalamin 2 0.006410 0.484076 -4.695863 chr1-968 chr1 83663780 83663936 + 25.4 NA Intergenic RMER19B|LTR|ERVK -376634 NM_172430 77629 Mm.154303 NM_172430 ENSMUSG00000026163 Sphkap 4930544G21Rik|A930009L15Rik|AI852220|mKIAA1678 SPHK1 interactor, AKAP domain containing 0.000000 0.496815 -5.342027 chr2-874 chr2 157232445 157232601 + 25.4 NA Intergenic Intergenic -19027 NM_010923 18111 Mm.34330 NM_010923 ENSMUSG00000067786 Nnat 5730414I02Rik|AW107673|Peg5 neuronatin 0.025641 0.439490 -2.544392 chr1-1091 chr1 166704252 166704408 + 25.4 NA Intergenic Intergenic 67855 NM_008510 16963 Mm.190 NM_008510 ENSMUSG00000026573 Xcl1 AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1 chemokine (C motif) ligand 1 0.006410 0.522293 -7.338250 chr5-933 chr5 118328675 118328831 + 25.4 NA 3' UTR (NM_172721, exon 11 of 11) 3' UTR (NM_172721, exon 11 of 11) 39900 NM_021344 57816 Mm.273285 NM_021344 ENSMUSG00000029359 Tesc 1010001A17Rik|2410011K10Rik|MGC117906|TE-1 tescalcin 0.012821 0.630573 -1.711726 chr13-488 chr13 108970632 108970788 + 25.4 NA intron (NM_145456, intron 1 of 13) intron (NM_145456, intron 1 of 13) 40101 NM_145456 67263 Mm.433838 XM_358311 ENSMUSG00000032846 Zswim6 2900036G02Rik|mKIAA1577 zinc finger, SWIM domain containing 6 0.012821 0.496815 0.622191 chr18-290 chr18 13056338 13056494 + 25.4 NA intron (NM_207530, intron 5 of 27) intron (NM_207530, intron 5 of 27) 28473 NM_207530 64291 Mm.443224 NM_207530 ENSMUSG00000044252 Osbpl1a G430090F17Rik|Gm753|Osbpl1b oxysterol binding protein-like 1A 0.006410 0.484076 -4.593112 chr19-261 chr19 56671411 56671567 + 25.4 NA Intergenic Intergenic 69979 NM_025811 66866 Mm.392509 NM_025811 ENSMUSG00000025078 Nhlrc2 1200003G01Rik|AI835049|AV002846|AW496455 NHL repeat containing 2 0.000000 0.445860 -1.511276 chr7-434 chr7 44679839 44679995 + 25.4 NA TTS (NR_033136) TTS (NR_033136) 3783 NM_030693 107503 Mm.389890 NM_030693 ENSMUSG00000038539 Atf5 AFTA|Atf7|Atfx|MGC102397|ODA-10 activating transcription factor 5 0.000000 0.401274 0.295468 chr12-619 chr12 74801725 74801881 + 25.4 NA Intergenic Intergenic -24901 NM_010431 15251 Mm.446610 NM_010431 ENSMUSG00000021109 Hif1a AA959795|HIF1alpha|MOP1|bHLHe78 hypoxia inducible factor 1, alpha subunit 0.000000 0.331210 -0.727115 chr12-530 chr12 17600065 17600221 + 25.4 NA Intergenic Intergenic 29791 NM_013614 18263 Mm.34102 NM_013614 ENSMUSG00000011179 Odc1 MGC103389|ODC ornithine decarboxylase, structural 1 0.012821 0.522293 -4.136923 chr6-485 chr6 37357811 37357967 + 25.4 NA intron (NM_178661, intron 1 of 11) intron (NM_178661, intron 1 of 11) 13867 NM_178661 208647 Mm.169929 NM_178661 ENSMUSG00000038648 Creb3l2 BBF2H7|C530025K05Rik cAMP responsive element binding protein 3-like 2 0.044872 0.541401 -4.627399 chr5-935 chr5 118959648 118959804 + 25.4 NA intron (NM_172424, intron 4 of 30) intron (NM_172424, intron 4 of 30) 137978 NM_172424 76199 Mm.206238 NM_172424 ENSMUSG00000018076 Med13l 2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025 mediator complex subunit 13-like 0.006410 0.420382 2.477933 chr13-493 chr13 112990665 112990821 + 25.4 NA Intergenic Intergenic -60882 NM_011945 26401 Mm.15918 NM_011945 ENSMUSG00000021754 Map3k1 MAPKKK1|MEKK1|Mekk mitogen-activated protein kinase kinase kinase 1 0.025641 0.496815 -3.335130 chr2-812 chr2 103936945 103937101 + 25.4 NA Intergenic Intergenic 13416 NM_026634 68243 Mm.158191 NM_026634 ENSMUSG00000032671 A930018P22Rik - RIKEN cDNA A930018P22 gene 0.000000 0.528662 1.434058 chr12-629 chr12 78050273 78050429 + 25.4 NA Intergenic MTD|LTR|MaLR -107509 NM_016893 53618 Mm.35628 NM_016893 ENSMUSG00000021065 Fut8 - fucosyltransferase 8 0.012821 0.522293 0.972706 chr14-247 chr14 35638202 35638358 + 25.4 NA Intergenic Intergenic 208529 NM_028407 72972 Mm.27621 NM_027045 ENSMUSG00000058690 Gcap14 1700012P13Rik|2900054P12Rik|AI035535|AW108503 granule cell antiserum positive 14 0.006410 0.522293 -4.752535 chr19-248 chr19 46532289 46532445 + 25.4 NA intron (NM_001025391, intron 10 of 11) intron (NM_001025391, intron 10 of 11) -22591 NM_053100 93679 Mm.481672 NM_053100 ENSMUSG00000025034 Trim8 AA408830|BB006755|GERP|Rnf27 tripartite motif-containing 8 0.006410 0.503185 -0.220575 chr11-924 chr11 120194891 120195047 + 25.4 NA promoter-TSS (NM_027980) promoter-TSS (NM_027980) -133 NM_027980 71885 Mm.481440 NM_027980 ENSMUSG00000025384 2310003H01Rik Faap100 RIKEN cDNA 2310003H01 gene 0.076923 0.656051 -6.243388 chr1-899 chr1 64056077 64056233 + 25.4 NA promoter-TSS (NM_033563) promoter-TSS (NM_033563) -490 NM_033563 93691 Mm.458200 NM_033563 ENSMUSG00000025959 Klf7 9830124P08Rik Kruppel-like factor 7 (ubiquitous) 0.089744 0.656051 -7.890626 chr10-596 chr10 127861254 127861410 + 25.4 NA promoter-TSS (NM_198160) promoter-TSS (NM_198160) -852 NM_001114096 68094 Mm.417338 NM_001114096 ENSMUSG00000025369 Smarcc2 5930405J04Rik SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 0.019231 0.420382 -3.747292 chr6-459 chr6 18427898 18428054 + 25.4 NA intron (NM_080285, intron 2 of 22) intron (NM_080285, intron 2 of 22) 36849 NM_080285 30785 Mm.480377 NM_080285 ENSMUSG00000000416 Cttnbp2 3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758 cortactin binding protein 2 0.000000 0.471338 -3.333829 chr19-196 chr19 5594703 5594859 + 25.4 NA Intergenic Intergenic -7091 NM_026616 68209 Mm.246200 NM_026616 ENSMUSG00000024925 Rnaseh2c 1500026D16Rik|AYP1 ribonuclease H2, subunit C 0.019231 0.471338 2.635792 chr10-487 chr10 67456303 67456459 + 25.4 NA Intergenic Intergenic 81427 NM_001081346 170799 Mm.209844 NM_001081346 ENSMUSG00000037846 Rtkn2 B130039D23Rik|MGC189880|Mbf|Plekhk1 rhotekin 2 0.025641 0.401274 -6.948064 chr11-795 chr11 81715258 81715414 + 25.4 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) 69255 NM_001034013 11418 Mm.234998 NM_001034013 ENSMUSG00000020704 Accn1 ACIC2|ASIC2|BNC1|BNaC1a|Mdeg amiloride-sensitive cation channel 1, neuronal (degenerin) 0.012821 0.490446 0.764907 chr5-1015 chr5 142460121 142460277 + 25.4 NA intron (NM_177879, intron 44 of 44) intron (NM_177879, intron 44 of 44) -193771 NM_199068 17425 Mm.24214 NM_199068 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf forkhead box K1 0.000000 0.477707 1.923383 chr7-514 chr7 110642747 110642903 + 25.4 NA 3' UTR (NM_053247, exon 6 of 6) 3' UTR (NM_053247, exon 6 of 6) -7265 NM_025999 67150 Mm.96867 NM_025999 ENSMUSG00000030788 Rnf141 2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230 ring finger protein 141 0.012821 0.464968 -3.202785 chr12-587 chr12 55394504 55394660 + 25.4 NA Intergenic Intergenic -81638 NR_033689 665239 XM_975549 Gm7550 EG665239|Gm666 predicted gene 7550 0.006410 0.458599 -5.432670 chr13-389 chr13 38319983 38320139 + 25.4 NA Intergenic Intergenic -33120 NM_007556 12161 Mm.385759 NM_007556 ENSMUSG00000039004 Bmp6 D13Wsu115e|Vgr1 bone morphogenetic protein 6 0.019231 0.490446 -5.745105 chr6-622 chr6 114650209 114650365 + 25.4 NA intron (NM_028835, intron 6 of 18) intron (NM_028835, intron 6 of 18) 41544 NM_028835 74244 Mm.275332 NM_028835 ENSMUSG00000030314 Atg7 1810013K23Rik|Agp7|Apg7l|Atg7l autophagy-related 7 (yeast) 0.006410 0.535032 4.436196 chr9-591 chr9 40508930 40509086 + 25.4 NA intron (NM_133733, intron 1 of 6) intron (NM_133733, intron 1 of 6) -43333 NM_031165 15481 Mm.412745 NM_031165 ENSMUSG00000015656 Hspa8 2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10|MGC102007|MGC106514|MGC118485 heat shock protein 8 0.025641 0.547771 1.567471 chr6-470 chr6 28965135 28965291 + 25.4 NA Intergenic Intergenic -7415 NR_029567 387237 NR_029567 Mir129-1 Mirn129-1|Mirn129b|miR-129b microRNA 129-1 0.025641 0.414013 5.260039 chr5-876 chr5 100246901 100247057 + 25.4 NA Intergenic Intergenic -27739 NM_001077265 11991 Mm.150231 NM_001077265 ENSMUSG00000000568 Hnrnpd Auf1|C230004L04|Hnrpd heterogeneous nuclear ribonucleoprotein D 0.006410 0.407643 -4.014331 chr11-917 chr11 118769334 118769490 + 25.4 NA Intergenic Intergenic -34865 NM_001030291 238011 Mm.244114 NM_001030291 ENSMUSG00000046697 Enpp7 Alk-SMase|Gm254 ectonucleotide pyrophosphatase/phosphodiesterase 7 0.025641 0.579618 -5.419473 chr17-567 chr17 90752303 90752459 + 25.4 NA intron (NM_020252, intron 4 of 22) intron (NM_020252, intron 4 of 22) 248740 NM_177284 18189 Mm.480021 NM_020252 ENSMUSG00000024109 Nrxn1 1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578 neurexin I 0.000000 0.496815 3.974607 chr4-711 chr4 87139523 87139679 + 25.4 NA Intergenic Intergenic 137944 NM_029931 70122 Mm.288898 NM_027326 ENSMUSG00000028496 Mllt3 2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 0.006410 0.471338 0.295469 chr13-474 chr13 100728918 100729074 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -112237 NM_008634 17755 Mm.474896 NM_008634 ENSMUSG00000052727 Mtap1b A230055D22|AI843217|LC1|MAP1B|MAP5|MGC169657|MGC169658|Mtap-5|Mtap5 microtubule-associated protein 1B 0.000000 0.394904 7.557011 chr10-467 chr10 42909495 42909651 + 25.4 NA promoter-TSS (NM_027772) promoter-TSS (NM_027772) -327 NM_027772 71365 Mm.363225 NM_001168289 ENSMUSG00000038240 Pdss2 5430420P03Rik|Gm60|Plmp|kd|mDLP1 prenyl (solanesyl) diphosphate synthase, subunit 2 0.128205 0.687898 -3.550165 chr5-897 chr5 110350452 110350608 + 25.4 NA 5' UTR (NM_001163996, exon 1 of 5) 5' UTR (NM_001163996, exon 1 of 5) 137 NM_001163996 675812 Mm.442122 XM_001479199 ENSMUSG00000023284 Zfp605 A830023I12Rik|MGC7438 zinc finger protein 605 0.044872 0.535032 -6.520407 chr13-475 chr13 100735318 100735474 + 25.4 NA Intergenic Intergenic -118637 NM_008634 17755 Mm.474896 NM_008634 ENSMUSG00000052727 Mtap1b A230055D22|AI843217|LC1|MAP1B|MAP5|MGC169657|MGC169658|Mtap-5|Mtap5 microtubule-associated protein 1B 0.006410 0.414013 -1.115061 chr15-359 chr15 53498417 53498573 + 25.4 NA intron (NM_177225, intron 3 of 4) intron (NM_177225, intron 3 of 4) 234024 NM_177225 320679 Mm.442455 NM_177225 ENSMUSG00000058656 Samd12 A830094I09Rik sterile alpha motif domain containing 12 0.000000 0.420382 -1.259827 chr3-547 chr3 88638750 88638906 + 25.4 NA promoter-TSS (NM_031248) promoter-TSS (NM_031248) 26 NM_031248 83409 Mm.41680 NM_031248 ENSMUSG00000028062 Robld3 2010111E04Rik|AL022628|Mapbpip|P14|Rab25 roadblock domain containing 3 0.051282 0.624204 1.024732 chr12-561 chr12 39547014 39547170 + 25.4 NA Intergenic Intergenic 252959 NM_001163154 14009 Mm.4866 NM_001163154 ENSMUSG00000004151 Etv1 ER81|Etsrp81 ets variant gene 1 0.000000 0.394904 -4.986521 chr2-832 chr2 121412453 121412609 + 25.4 NA intron (NM_172673, intron 1 of 14) intron (NM_172673, intron 1 of 14) 85967 NM_172673 228564 Mm.428057 NM_172673 ENSMUSG00000027238 Frmd5 1500032A09Rik|5830442F04|A930004K21Rik|R75430 FERM domain containing 5 0.012821 0.452229 -3.694609 chr9-549 chr9 13985854 13986010 + 25.4 NA Intergenic Intergenic -40765 NM_030261 75747 Mm.439776 NM_030261 ENSMUSG00000032009 Sesn3 5630400E15Rik|BC003348|MGC7182|SEST3 sestrin 3 0.006410 0.452229 -8.400826 chr17-465 chr17 31323371 31323527 + 25.4 NA intron (NM_016670, intron 5 of 10) intron (NM_016670, intron 5 of 10) 29967 NM_016670 18771 Mm.259295 NM_016670 ENSMUSG00000006705 Pknox1 D17Wsu76e|PREP1 Pbx/knotted 1 homeobox 0.012821 0.471338 1.439429 chr11-678 chr11 21091933 21092089 + 25.4 NA Intergenic RLTR45|LTR|ERVK -46880 NM_139061 245944 Mm.170103 NM_139061 ENSMUSG00000020128 Vps54 5330404P15Rik|Hcc8|Vps54l|mSLP8|wr vacuolar protein sorting 54 (yeast) 0.025641 0.541401 5.000666 chr13-481 chr13 102244941 102245097 + 25.4 NA Intergenic Intergenic -311335 NM_022885 69048 Mm.402215 NM_022885 ENSMUSG00000021629 Slc30a5 1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1 solute carrier family 30 (zinc transporter), member 5 0.012821 0.439490 4.223271 chr17-389 chr17 5534283 5534439 + 25.4 NA intron (NM_146073, intron 1 of 8) intron (NM_146073, intron 1 of 8) 85280 NM_146073 224454 Mm.478308 NM_146073 ENSMUSG00000034265 Zdhhc14 B530001K09Rik|MGC29194|New1cp zinc finger, DHHC domain containing 14 0.025641 0.496815 0.016881 chr1-1085 chr1 161368989 161369145 + 25.4 NA intron (NM_022312, intron 1 of 22) intron (NM_022312, intron 1 of 22) 8622 NM_022312 21960 Mm.444966 NM_022312 ENSMUSG00000015829 Tnr J1-tenascin|TN-R|janusin|restrictin tenascin R 0.038462 0.452229 -2.675615 chr6-645 chr6 122486831 122486987 + 25.4 NA intron (NM_015776, intron 5 of 9) intron (NM_015776, intron 5 of 9) 7615 NM_015776 50530 Mm.41931 NM_015776 ENSMUSG00000030116 Mfap5 MAGP-2 microfibrillar associated protein 5 0.006410 0.394904 -0.912473 chr4-760 chr4 108972809 108972965 + 25.4 NA intron (NM_013876, intron 1 of 2) intron (NM_013876, intron 1 of 2) 1550 NM_013876 29864 Mm.456388 NM_013876 ENSMUSG00000028557 Rnf11 - ring finger protein 11 0.012821 0.439490 -4.687939 chr16-371 chr16 85641686 85641842 + 25.4 NA Intergenic Intergenic 50547 NM_009621 11504 Mm.1421 NM_009621 ENSMUSG00000022893 Adamts1 ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 0.012821 0.401274 1.558474 chr15-448 chr15 103133331 103133487 + 25.4 NA Intergenic Intergenic 5063 NM_030720 80910 Mm.160369 NM_030720 ENSMUSG00000063234 Gpr84 EX33 G protein-coupled receptor 84 0.064103 0.528662 -2.934350 chr16-309 chr16 17161563 17161719 + 25.4 NA intron (NM_178922, intron 1 of 2) intron (NM_178922, intron 1 of 2) 14492 NM_178922 58180 Mm.470636 NM_178922 ENSMUSG00000050240 Hic2 AA409108|HRG22|mKIAA1020 hypermethylated in cancer 2 0.006410 0.439490 0.962065 chrX-113 chrX 131407202 131407358 + 25.4 NA Intergenic MIRb|SINE|MIR 7320 NM_009749 12069 Mm.94160 NM_009749 ENSMUSG00000042750 Bex2 AL024066|Bex1 brain expressed X-linked 2 0.006410 0.426752 0.222274 chr12-529 chr12 17168389 17168545 + 25.4 NA Intergenic RLTR25B|LTR|ERVK 33901 NM_201531 382571 Mm.40173 NM_201531 ENSMUSG00000051726 Kcnf1 Gm1182|Kv5.1|MGC62472 potassium voltage-gated channel, subfamily F, member 1 0.006410 0.471338 -4.085016 chr19-231 chr19 32380170 32380326 + 25.4 NA intron (NM_144792, intron 2 of 9) intron (NM_144792, intron 2 of 9) 35065 NM_001168525 208449 Mm.329810 NM_001168525 ENSMUSG00000040451 Sgms1 9530058O11Rik|AI841905|C80702|MGC30540|Mob|Sms1|Sor1|Tmem23 sphingomyelin synthase 1 0.012821 0.458599 -0.456410 chr15-435 chr15 98928281 98928437 + 25.4 NA intron (NM_176835, intron 1 of 2) intron (NM_176835, intron 1 of 2) 842 NM_176835 72778 Mm.30544 NM_176835 ENSMUSG00000038009 Dnajc22 2810451A06Rik|AI506245 DnaJ (Hsp40) homolog, subfamily C, member 22 0.006410 0.464968 2.147045 chr18-369 chr18 76752003 76752159 + 25.4 NA Intergenic Intergenic -308773 NM_001109743 664805 Mm.391121 XM_001478978 Skor2 Corl2|EG664805|Fussel18|Gm7348 SKI family transcriptional corepressor 2 0.038462 0.547771 2.507705 chr4-659 chr4 53452908 53453064 + 25.4 NA Intergenic MLT1G3|LTR|MaLR -8526 NM_001159633 100434 Mm.270088 NM_001159633 ENSMUSG00000028412 Slc44a1 2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92 solute carrier family 44, member 1 0.012821 0.477707 -2.950480 chr5-919 chr5 115034270 115034426 + 25.4 NA TTS (NR_027872) TTS (NR_027872) 142 NM_019834 26431 Mm.195632 NM_001077359 ENSMUSG00000041890 Git2 1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|KIAA0148|mKIAA0148 G protein-coupled receptor kinase-interactor 2 0.141026 0.745223 -3.003338 chr2-918 chr2 178116215 178116371 + 25.4 NA intron (NM_001177791, intron 1 of 12) intron (NM_001177791, intron 1 of 12) -6198 NM_001007154 74189 Mm.44413 NM_001007154 ENSMUSG00000027525 Phactr3 1500003N10Rik|4930415A02Rik|H17739|KIAA4224|Scapin1|Scapinin|mKIAA4224 phosphatase and actin regulator 3 0.032051 0.439490 -3.105729 chr1-855 chr1 37941546 37941702 + 25.4 NA promoter-TSS (NM_198303) promoter-TSS (NM_198303) 130 NM_172054 98258 Mm.28438 NM_172054 ENSMUSG00000058407 Txndc9 AI098020|APACD thioredoxin domain containing 9 0.064103 0.611465 -3.583933 chr2-807 chr2 102616291 102616447 + 25.4 NA intron (NM_001177785, intron 15 of 15) intron (NM_001177785, intron 15 of 15) 86135 NM_001177785 12505 Mm.423621 NM_001039150 ENSMUSG00000005087 Cd44 AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1 CD44 antigen 0.012821 0.439490 -5.280792 chr14-208 chr14 17064122 17064278 + 25.4 NA promoter-TSS (NM_023526) promoter-TSS (NM_023526) -59 NM_023526 69721 Mm.25648 NM_023526 ENSMUSG00000021772 Nkiras1 2400004O09Rik|KBRAS1|kappaB-Ras1 NFKB inhibitor interacting Ras-like protein 1 0.057692 0.656051 0.569199 chr16-405 chr16 97804595 97804751 + 25.4 NA Intergenic Intergenic -38562 NM_015775 50528 Mm.276145 NM_015775 ENSMUSG00000000385 Tmprss2 D16Ertd61e|MGC6821 transmembrane protease, serine 2 0.019231 0.401274 -2.681479 chr1-1063 chr1 154665644 154665800 + 25.4 NA promoter-TSS (NM_001160256) promoter-TSS (NM_001160256) -858 NM_001005507 226517 Mm.270775 NM_001005507 ENSMUSG00000042772 Smg7 9430023P16Rik|MGC91209|mKIAA0250 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) 0.025641 0.509554 -4.263611 chr4-805 chr4 132325396 132325552 + 25.4 NA intron (NM_146155, intron 2 of 6) intron (NM_146155, intron 2 of 6) 41893 NM_146155 230793 Mm.421391 NM_146155 ENSMUSG00000037692 Ahdc1 D030015G18Rik|MGC29331 AT hook, DNA binding motif, containing 1 0.012821 0.522293 2.295746 chr1-957 chr1 81053640 81053796 + 25.4 NA intron (NM_172849, intron 2 of 4) intron (NM_172849, intron 2 of 4) 97378 NM_172849 241134 Mm.313904 NM_172849 ENSMUSG00000054976 9430031J16Rik Jr6|Kiaa1486|MGC90544 RIKEN cDNA 9430031J16 gene 0.000000 0.439490 -9.483050 chr17-472 chr17 33288732 33288888 + 25.4 NA intron (NM_029804, intron 1 of 15) intron (NM_029804, intron 1 of 15) 3335 NM_001109913 76936 Mm.311439 NM_001109913 ENSMUSG00000059208 Hnrnpm 2610023M21Rik|AA409009|Hnrpm|KIAA4193|mKIAA4193 heterogeneous nuclear ribonucleoprotein M 0.000000 0.369427 -5.614668 chr6-468 chr6 28730566 28730722 + 25.4 NA intron (NM_019776, intron 15 of 23) intron (NM_019776, intron 15 of 23) 51113 NM_138682 192198 Mm.443660 NM_138682 ENSMUSG00000049939 Lrrc4 MBAG1|NGL-2|NLG-2|Nag14 leucine rich repeat containing 4 0.006410 0.394904 3.181372 chr5-984 chr5 135973515 135973671 + 25.4 NA promoter-TSS (NM_008898) promoter-TSS (NM_008898) -247 NM_008898 18984 Mm.3863 NM_008898 ENSMUSG00000005514 Por 4933424M13Rik|CPR|CYPOR P450 (cytochrome) oxidoreductase 0.076923 0.617834 -6.226927 chr12-712 chr12 108649073 108649229 + 25.4 NA intron (NM_009832, intron 11 of 11) intron (NM_009832, intron 11 of 11) 21607 NM_009832 12454 Mm.474441 NM_009832 ENSMUSG00000021258 Ccnk AW123198|AW413594|CPR4|CycK cyclin K 0.012821 0.541401 2.663250 chr13-363 chr13 14413357 14413513 + 25.4 NA intron (NM_008944, intron 5 of 7) intron (NM_008944, intron 5 of 7) 8068 NM_008944 19166 Mm.252255 NM_008944 ENSMUSG00000015671 Psma2 Lmpc3 proteasome (prosome, macropain) subunit, alpha type 2 0.006410 0.363057 -5.696009 chr9-605 chr9 47515817 47515973 + 25.4 NA intron (NM_001025600, intron 1 of 8) intron (NM_001025600, intron 1 of 8) 234549 NM_018770 54725 Mm.234832 NM_001025600 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 cell adhesion molecule 1 0.000000 0.356688 1.767827 chr4-843 chr4 147507940 147508096 + 25.4 NA intron (NM_001085505, intron 5 of 10) intron (NM_001085505, intron 5 of 10) 20902 NM_001085505 230909 Mm.332067 XM_149554 ENSMUSG00000070577 Gm572 - predicted gene 572 0.012821 0.547771 -5.831373 chr2-908 chr2 172061834 172061891 + 25.4 NA promoter-TSS (NM_011497) promoter-TSS (NM_011497) -151 NM_011497 20878 Mm.249363 NM_011497 ENSMUSG00000027496 Aurka AIRK1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6 aurora kinase A 0.105263 0.620690 -4.653352 chr1-1035 chr1 133953707 133953863 + 25.4 NA intron (NM_008795, intron 1 of 15) intron (NM_008795, intron 1 of 15) 13446 NM_008795 18557 Mm.28130 NM_008795 ENSMUSG00000026437 Cdk18 AA682070|Ctk18|Pctk3 cyclin-dependent kinase 18 0.006410 0.585987 -2.518273 chr13-473 chr13 100575737 100575893 + 25.4 NA intron (NM_008634, intron 2 of 6) intron (NM_008634, intron 2 of 6) 40944 NM_008634 17755 Mm.474896 NM_008634 ENSMUSG00000052727 Mtap1b A230055D22|AI843217|LC1|MAP1B|MAP5|MGC169657|MGC169658|Mtap-5|Mtap5 microtubule-associated protein 1B 0.012821 0.496815 1.520452 chr9-625 chr9 55200540 55200696 + 25.4 NA intron (NM_172923, intron 5 of 10) intron (NM_172923, intron 5 of 10) 75533 NM_172923 244886 Mm.24361 NM_172923 ENSMUSG00000032313 AI118078 9630029F15 expressed sequence AI118078 0.019231 0.528662 -5.048074 chr13-426 chr13 56895910 56896066 + 25.4 NA intron (NM_012035, intron 2 of 11) intron (NM_012035, intron 2 of 11) 9222 NM_012035 26946 Mm.62409 NM_012035 ENSMUSG00000021541 Trpc7 TRP-7|TRP7|Trrp8 transient receptor potential cation channel, subfamily C, member 7 0.006410 0.452229 -0.832962 chr15-430 chr15 97578186 97578342 + 25.4 NA intron (NM_001177811, intron 20 of 26) intron (NM_001177811, intron 20 of 26) 17436 NM_001177810 223864 Mm.24028 NM_001177810 ENSMUSG00000022469 Rapgef3 2310016P22Rik|9330170P05Rik|Epac|Epac1|MGC19192 Rap guanine nucleotide exchange factor (GEF) 3 0.019231 0.611465 0.018291 chr6-609 chr6 100122942 100123098 + 25.4 NA Intergenic L1MB5|LINE|L1 129801 NM_019743 56353 Mm.321633 NM_019743 ENSMUSG00000072872 Rybp 2410018J24Rik|DEDAF|MGC62213|YEAF1 RING1 and YY1 binding protein 0.019231 0.547771 -6.873507 chr10-543 chr10 90600862 90601018 + 25.4 NA exon (NM_001080134, exon 1 of 4) exon (NM_001080134, exon 1 of 4) 441 NM_001080132 21917 Mm.439157 NM_001080129 ENSMUSG00000019961 Tmpo 5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP thymopoietin 0.153846 0.732484 -0.654698 chr4-678 chr4 69703540 69703696 + 25.4 NA Intergenic Intergenic 193110 NM_145990 214444 Mm.379344 NM_145990 ENSMUSG00000039298 Cdk5rap2 2900018K03Rik|MGC38528|an|mKIAA1633 CDK5 regulatory subunit associated protein 2 0.019231 0.420382 1.979728 chr11-677 chr11 21008132 21008288 + 25.4 NA intron (NM_023324, intron 1 of 6) intron (NM_023324, intron 1 of 6) 16884 NM_023324 67245 Mm.28957 NM_023324 ENSMUSG00000020134 Peli1 2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e pellino 1 0.019231 0.439490 4.865302 chr15-407 chr15 83907923 83908079 + 25.4 NA exon (NM_013873, exon 6 of 7) exon (NM_013873, exon 6 of 7) -14886 NM_029946 77627 Mm.196288 NM_001161628 ENSMUSG00000022441 Efcab6 4931407K02Rik|4932408N08Rik|KIAA1672|bM150J22.2|mKIAA1672 EF-hand calcium binding domain 6 0.019231 0.579618 -5.619414 chr1-831 chr1 32339569 32339725 + 25.4 NA intron (NM_133235, intron 3 of 8) intron (NM_133235, intron 3 of 8) 152192 NM_001164286 408191 Mm.479439 XM_887934 ENSMUSG00000067716 Gm5415 EG408191|Senp14 predicted gene 5415 0.000000 0.445860 -2.655354 chr14-201 chr14 9615491 9615647 + 25.4 NA intron (NM_010210, intron 2 of 8) intron (NM_010210, intron 2 of 8) 339714 NM_010210 14198 Mm.441926 NM_010210 ENSMUSG00000060579 Fhit AW045638|Fra14A2 fragile histidine triad gene 0.019231 0.484076 -1.204294 chr11-656 chr11 5398170 5398326 + 25.4 NA Intergenic Intergenic -22721 NM_013842 22433 Mm.469937 NM_013842 ENSMUSG00000020484 Xbp1 D11Ertd39e|TREB-5|TREB5|XBP-1 X-box binding protein 1 0.000000 0.528662 -4.291199 chr19-222 chr19 25849299 25849455 + 25.4 NA Intergenic Intergenic 109870 NM_145831 226049 Mm.275572 NM_145831 ENSMUSG00000048138 Dmrt2 Terra doublesex and mab-3 related transcription factor 2 0.019231 0.433121 -2.621656 chr9-719 chr9 102909694 102909850 + 25.4 NA intron (NM_033314, intron 3 of 13) intron (NM_033314, intron 3 of 13) 43134 NM_033314 24059 Mm.412758 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2|mPgt solute carrier organic anion transporter family, member 2a1 0.019231 0.407643 9.273689 chr13-391 chr13 40745909 40746065 + 25.4 NA Intergenic Intergenic -1190 NM_011547 21418 Mm.85544 NM_001122948 ENSMUSG00000021359 Tcfap2a AP-2|Ap2|Ap2tf|Tfap2a transcription factor AP-2, alpha 0.057692 0.547771 -0.304977 chr6-587 chr6 92905025 92905181 + 25.4 NA promoter-TSS (NR_015530) promoter-TSS (NR_015530) -982 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.012821 0.464968 -2.977591 chr10-462 chr10 37500305 37500461 + 25.4 NA Intergenic Intergenic -672041 NM_008538 17118 Mm.480567 NM_008538 ENSMUSG00000069662 Marcks Macs|PKCSL myristoylated alanine rich protein kinase C substrate 0.000000 0.471338 -2.608285 chr4-858 chr4 150383808 150383964 + 25.4 NA intron (NM_001166021, intron 3 of 22) intron (NM_001166021, intron 3 of 22) 321671 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.012821 0.573248 -0.971677 chr8-501 chr8 47452468 47452624 + 25.4 NA 3' UTR (NM_001033148, exon 7 of 7) 3' UTR (NM_001033148, exon 7 of 7) 19081 NM_001033246 212392 Mm.296649 NM_001033246 ENSMUSG00000071104 Ccdc110 Gm172 coiled-coil domain containing 110 0.025641 0.464968 9.701454 chr5-982 chr5 135434357 135434426 + 25.4 NA promoter-TSS (NM_013763) promoter-TSS (NM_013763) 54 NM_013763 27368 Mm.441276 NM_013763 ENSMUSG00000005374 Tbl2 C76179|WS-bTRP transducin (beta)-like 2 0.043478 0.657143 -4.620699 chr7-497 chr7 99040200 99040356 + 25.4 NA exon (NM_026384, exon 3 of 8) exon (NM_026384, exon 3 of 8) 17627 NM_026384 67800 Mm.180189 NM_026384 ENSMUSG00000030747 Dgat2 0610010B06Rik|DGAT-2 diacylglycerol O-acyltransferase 2 0.032051 0.560510 0.490168 chr9-631 chr9 57328135 57328291 + 25.4 NA intron (NM_007747, intron 2 of 4) intron (NM_007747, intron 2 of 4) -7451 NM_175273 78323 Mm.409156 NM_001166364 ENSMUSG00000032305 2310046O06Rik AI594866 RIKEN cDNA 2310046O06 gene 0.012821 0.407643 -8.414847 chr13-464 chr13 98250757 98250913 + 25.4 NA intron (NM_001146043, intron 6 of 20) intron (NM_001146043, intron 6 of 20) 12200 NM_177266 320806 Mm.219675 NM_001146043 ENSMUSG00000021666 Gfm2 6530419G12Rik|A930009M04Rik|EFG2|MST027 G elongation factor, mitochondrial 2 0.006410 0.439490 1.692956 chr5-1024 chr5 146539899 146540055 + 25.4 NA intron (NM_153599, intron 1 of 12) intron (NM_153599, intron 1 of 12) 4069 NM_153599 264064 Mm.260576 NM_153599 ENSMUSG00000029635 Cdk8 MGC37111 cyclin-dependent kinase 8 0.012821 0.490446 0.610530 chr9-603 chr9 46490423 46490579 + 25.4 NA Intergenic Intergenic -174096 NR_015605 73040 Mm.265384 NR_015605 2900052N01Rik AU067665 RIKEN cDNA 2900052N01 gene 0.012821 0.515924 0.610530 chr11-876 chr11 107285204 107285360 + 25.4 NA intron (NM_145823, intron 1 of 9) intron (NM_145823, intron 1 of 9) 1528 NM_145823 71795 Mm.476186 NM_145823 ENSMUSG00000040430 Pitpnc1 1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|MGC118005|RDGBB|RDGBB1|rdgB-beta phosphatidylinositol transfer protein, cytoplasmic 1 0.076923 0.732484 -5.375185 chr6-499 chr6 48467142 48467298 + 25.4 NA promoter-TSS (NM_133764) promoter-TSS (NM_133764) 66 NM_133764 76252 Mm.30214 NM_133764 ENSMUSG00000039347 Atp6v0e2 0610006O14Rik|NM9.2 ATPase, H+ transporting, lysosomal V0 subunit E2 0.096154 0.624204 -3.135247 chr1-1031 chr1 132874574 132874730 + 25.4 NA Intergenic RSINE1|SINE|B4 27262 NM_010548 16153 Mm.874 NM_010548 ENSMUSG00000016529 Il10 CSIF|Il-10 interleukin 10 0.019231 0.445860 -0.921178 chr8-615 chr8 129593714 129593870 + 25.4 NA Intergenic MIRb|SINE|MIR -114266 NM_001164598 270110 Mm.480586 XM_001002526 ENSMUSG00000051495 Irf2bp2 E130305N23Rik interferon regulatory factor 2 binding protein 2 0.012821 0.503185 -1.668051 chr1-1115 chr1 173919413 173919569 + 25.4 NA promoter-TSS (NM_021607) promoter-TSS (NM_021607) -67 NM_021607 59287 Mm.218203 NM_021607 ENSMUSG00000003458 Ncstn 9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253 nicastrin 0.089744 0.662420 -0.303230 chr2-750 chr2 64263563 64263719 + 25.4 NA Intergenic Intergenic -364795 NM_021716 60344 Mm.438921 NM_021716 ENSMUSG00000075324 Fign fi|fidget fidgetin 0.006410 0.343949 -5.150797 chr12-660 chr12 86811177 86811333 + 25.4 NA intron (NM_001081423, intron 21 of 33) intron (NM_001081423, intron 21 of 33) 97203 NM_001081423 320244 Mm.132172 NM_001081423 ENSMUSG00000012609 Ttll5 1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998 tubulin tyrosine ligase-like family, member 5 0.025641 0.471338 3.769503 chr11-655 chr11 5385738 5385894 + 25.4 NA Intergenic Intergenic -35153 NM_013842 22433 Mm.469937 NM_013842 ENSMUSG00000020484 Xbp1 D11Ertd39e|TREB-5|TREB5|XBP-1 X-box binding protein 1 0.019231 0.464968 -4.738511 chr9-710 chr9 96342030 96342186 + 25.4 NA Intergenic Intergenic -54161 NM_011279 19823 Mm.28235 NM_011279 ENSMUSG00000051234 Rnf7 Rbx2|SAG ring finger protein 7 0.012821 0.452229 1.723935 chr11-827 chr11 93637550 93637706 + 25.4 NA Intergenic Intergenic 64228 NM_001013375 217109 Mm.379350 NM_001013375 ENSMUSG00000054079 Utp18 6230425C22Rik|6430513M13|MGC141453|MGC141454|Wdr50 UTP18, small subunit (SSU) processome component, homolog (yeast) 0.000000 0.464968 -6.036983 chr2-669 chr2 17966490 17966646 + 25.4 NA promoter-TSS (NM_028317) promoter-TSS (NM_028317) -365 NM_028317 72668 Mm.411958 NM_028317 2810030E01Rik 5730507N06Rik|BB088113|MGC59463 RIKEN cDNA 2810030E01 gene 0.032051 0.464968 -6.343729 chr2-901 chr2 167670311 167670467 + 25.4 NA 3' UTR (NM_011201, exon 9 of 9) 3' UTR (NM_011201, exon 9 of 9) 31409 NM_001080708 69553 Mm.68454 NM_001080708 ENSMUSG00000074577 Fam65c 2310033K02Rik|Gm124 family with sequence similarity 65, member C 0.000000 0.394904 -1.967140 chr7-582 chr7 133323270 133323426 + 25.4 NA Intergenic Intergenic 117110 NM_028654 73808 Mm.159067 NM_028654 ENSMUSG00000030976 4930404H21Rik MGC118359 RIKEN cDNA 4930404H21 gene 0.000000 0.414013 0.704889 chr3-545 chr3 88263878 88264034 + 25.4 NA Intergenic CpG 35635 NM_133665 17261 Mm.402786 NM_133665 ENSMUSG00000001419 Mef2d C80750|MGC31718 myocyte enhancer factor 2D 0.089744 0.643312 -3.875429 chr3-514 chr3 58323204 58323360 + 25.4 NA Intergenic Intergenic -180335 NM_001081229 72033 Mm.218409 NM_001081229 ENSMUSG00000027806 Tsc22d2 1810043J12Rik|5530402M19Rik TSC22 domain family, member 2 0.000000 0.452229 3.119964 chr1-1144 chr1 189852972 189853128 + 25.4 NA intron (NM_011935, intron 5 of 6) intron (NM_011935, intron 5 of 6) -110575 NM_021408 22283 Mm.331238 NM_021408 ENSMUSG00000026609 Ush2a A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin Usher syndrome 2A (autosomal recessive, mild) homolog (human) 0.012821 0.452229 -3.805885 chr6-506 chr6 49967718 49967874 + 25.4 NA Intergenic Intergenic -72030 NM_019939 56524 Mm.478422 NM_001164733 ENSMUSG00000038388 Mpp6 P55t|Pals2 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 0.019231 0.477707 -1.668935 chr3-585 chr3 107590310 107590466 + 25.4 NA Intergenic Intergenic -3434 NM_145922 99738 Mm.101976 NM_145922 ENSMUSG00000027895 Kcnc4 AI850292|KSHIIIC|Kcr2-4|Kv3.4 potassium voltage gated channel, Shaw-related subfamily, member 4 0.012821 0.528662 -8.094735 chr15-423 chr15 92860009 92860165 + 25.4 NA Intergenic RMER4B|LTR|ERVK 243177 NM_001033275 223827 Mm.22819 NM_001033275 ENSMUSG00000036197 Gxylt1 Glt8d3|Gm1228|Gm87 glucoside xylosyltransferase 1 0.000000 0.490446 -5.021327 chr4-751 chr4 107569240 107569396 + 25.4 NA exon (NM_011327, exon 12 of 16) exon (NM_011327, exon 12 of 16) -39296 NM_172874 242608 Mm.74710 NM_172874 ENSMUSG00000028600 Podn 9430070G18|Pcan|SLRR5A podocan 0.089744 0.675159 9.808255 chr11-922 chr11 119959183 119959339 + 25.4 NA intron (NM_001164798, intron 2 of 16) intron (NM_001164798, intron 2 of 16) 8180 NM_001164799 72055 Mm.253403 NM_001164798 ENSMUSG00000061306 Slc38a10 1810073N04Rik solute carrier family 38, member 10 0.025641 0.554140 -2.524134 chr10-475 chr10 60226826 60226982 + 25.4 NA promoter-TSS (NM_029770) promoter-TSS (NM_029770) 34 NM_029770 107449 Mm.290433 NM_029770 ENSMUSG00000020099 Unc5b 6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2 unc-5 homolog B (C. elegans) 0.166667 0.789809 -4.713453 chr2-825 chr2 118441031 118441187 + 25.4 NA TTS (NR_030716) TTS (NR_030716) 3907 NR_030716 100043272 Mm.398072 XM_001479861 ENSMUSG00000074918 5430417L22Rik ENSMUSG00000074918 RIKEN cDNA 5430417L22 gene 0.000000 0.535032 1.669616 chr12-617 chr12 74683242 74683398 + 25.4 NA intron (NM_008856, intron 12 of 13) intron (NM_008856, intron 12 of 13) -143384 NM_010431 15251 Mm.446610 NM_010431 ENSMUSG00000021109 Hif1a AA959795|HIF1alpha|MOP1|bHLHe78 hypoxia inducible factor 1, alpha subunit 0.032051 0.382166 -2.344951 chr1-1016 chr1 127492923 127493079 + 25.4 NA Intergenic Intergenic -11540 NM_027677 71111 Mm.424641 XM_913690 Gpr39 4933415E13Rik G protein-coupled receptor 39 0.025641 0.458599 -0.743662 chr18-308 chr18 25808631 25808787 + 25.4 NA intron (NM_001146294, intron 2 of 12) intron (NM_001146294, intron 2 of 12) 88284 NM_133195 108013 Mm.266435 XM_001473121 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 0.019231 0.420382 -2.608284 chr12-602 chr12 70602338 70602494 + 25.4 NA Intergenic MER102b|DNA|MER1_type -1959 NM_001135559 20663 Mm.3770 XM_127051 ENSMUSG00000034801 Sos2 - son of sevenless homolog 2 (Drosophila) 0.032051 0.541401 -3.559128 chr11-674 chr11 19911316 19911472 + 25.4 NA intron (NM_033523, intron 4 of 5) intron (NM_033523, intron 4 of 5) 86950 NM_033523 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 sprouty-related, EVH1 domain containing 2 0.012821 0.496815 -8.067147 chr1-1131 chr1 184482071 184482227 + 25.4 NA Intergenic Intergenic 80468 NM_130890 170725 Mm.189201 NM_001145806 ENSMUSG00000038599 Capn8 MGC159207|MGC159211|nCL-2|nCL-2' calpain 8 0.000000 0.528662 -5.133438 chr1-1120 chr1 180154890 180155046 + 25.4 NA promoter-TSS (NM_025511) promoter-TSS (NM_025511) -859 NM_025511 66359 Mm.453372 NM_025511 ENSMUSG00000026500 Fam36a 2310005N03Rik family with sequence similarity 36, member A 0.064103 0.535032 -7.376200 chr11-698 chr11 33100452 33100608 + 25.4 NA TTS (NM_019916) TTS (NM_019916) 3058 NM_019916 27140 Mm.25362 NM_019916 ENSMUSG00000040610 Tlx3 Hox11l2|Rnx|Tlx1l2 T-cell leukemia, homeobox 3 0.102564 0.668790 3.619338 chr3-502 chr3 50360110 50360266 + 25.4 NA Intergenic Intergenic 179620 NM_011990 26570 Mm.260988 NM_011990 ENSMUSG00000027737 Slc7a11 9930009M05Rik|AI451155|sut|xCT solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 0.006410 0.388535 -0.987436 chr3-557 chr3 95518461 95518617 + 25.4 NA Intergenic B1_Mur2|SINE|Alu -1254 NM_009709 11863 Mm.250265 NM_001037737 ENSMUSG00000015522 Arnt D3Ertd557e|Drnt|ESTM42|Hif1b|KIAA4051|W08714|bHLHe2|mKIAA4051 aryl hydrocarbon receptor nuclear translocator 0.000000 0.414013 -1.911312 chr4-806 chr4 133361185 133361341 + 25.4 NA intron (NM_001162970, intron 16 of 19) intron (NM_001162970, intron 16 of 19) 5886 NM_013706 23833 Mm.24130 NM_013706 ENSMUSG00000000682 Cd52 AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7 CD52 antigen 0.006410 0.554140 4.908093 chr7-548 chr7 120773582 120773738 + 25.4 NA promoter-TSS (NM_007672) promoter-TSS (NM_007672) -199 NM_007672 12585 Mm.1640 NM_007672 ENSMUSG00000030878 Cdr2 AA617262|MGC144810|MGC144811 cerebellar degeneration-related 2 0.070513 0.592357 -0.962171 chr9-707 chr9 94478182 94478338 + 25.4 NA promoter-TSS (NM_177909) promoter-TSS (NM_177909) -983 NM_177909 331004 Mm.326125 NM_177909 ENSMUSG00000031129 Slc9a9 5730527A11Rik|9930105B05|AI854429|Nhe9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 0.012821 0.509554 -4.496294 chr12-582 chr12 53987714 53987870 + 25.4 NA intron (NM_198111, intron 9 of 13) intron (NM_198111, intron 9 of 13) -182510 NM_013780 27386 Mm.466545 XM_001477854 ENSMUSG00000021010 Npas3 4930423H22Rik|bHLHe12 neuronal PAS domain protein 3 0.006410 0.350318 -5.474852 chr19-219 chr19 23960404 23960560 + 25.4 NA exon (NM_177034, exon 2 of 13) exon (NM_177034, exon 2 of 13) 134510 NM_177034 319924 Mm.22879 NM_177034 ENSMUSG00000024897 Apba1 6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha amyloid beta (A4) precursor protein binding, family A, member 1 0.166667 0.719745 1.555496 chr5-925 chr5 116597471 116597627 + 25.4 NA Intergenic Intergenic -47565 NM_177759 269693 Mm.10946 NM_177759 ENSMUSG00000043913 Ccdc60 AU018954|C130098D09 coiled-coil domain containing 60 0.006410 0.401274 1.789457 chr6-647 chr6 124684433 124684589 + 25.4 NA promoter-TSS (NR_029554) promoter-TSS (NR_029554) -502 NR_029792 723944 NR_029792 Mir200c Mirn200c microRNA 200c 0.038462 0.700637 -8.177104 chr1-912 chr1 70988651 70988807 + 25.4 NA intron (NM_007525, intron 6 of 10) intron (NM_007525, intron 6 of 10) 47451 NM_007525 12021 Mm.472810 NM_007525 ENSMUSG00000026196 Bard1 ENSMUSG00000060893|ENSMUSG00000073653 BRCA1 associated RING domain 1 0.000000 0.407643 -4.091316 chr6-656 chr6 134976844 134977000 + 25.4 NA promoter-TSS (NM_026360) promoter-TSS (NM_026360) -382 NM_026360 67755 Mm.166524 NM_026360 ENSMUSG00000030204 Ddx47 4930588A18Rik|C77285 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 0.006410 0.375796 -2.490685 chr17-467 chr17 31563518 31563674 + 25.4 NA Intergenic MIRb|SINE|MIR 20906 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Msk|Sik|Snf1lk salt inducible kinase 1 0.012821 0.547771 -1.967140 chr7-436 chr7 45263636 45263792 + 25.4 NA promoter-TSS (NM_009224) promoter-TSS (NM_009224) -25 NM_009224 20637 Mm.216386 NM_009224 ENSMUSG00000063511 Snrnp70 2700022N21Rik|3200002N22Rik|70kDa|AI325098|R74807|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K small nuclear ribonucleoprotein 70 (U1) 0.153846 0.675159 -0.747791 chr15-316 chr15 11119549 11119705 + 25.4 NA intron (NM_175501, intron 3 of 23) intron (NM_175501, intron 3 of 23) 110113 NM_175501 239337 Mm.224825 NM_175501 ENSMUSG00000047497 Adamts12 ADAMTS-12|AI605170 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12 0.057692 0.668790 1.018312 chr5-819 chr5 65091337 65091493 + 25.4 NA intron (NM_008453, intron 1 of 5) intron (NM_008453, intron 1 of 5) 8758 NM_008453 16599 Mm.439720 NM_008453 ENSMUSG00000029178 Klf3 9930027G08Rik|AL024007|Bklf|MGC151315|Tef-2 Kruppel-like factor 3 (basic) 0.038462 0.560510 3.158714 chr16-391 chr16 93222383 93222539 + 25.4 NA Intergenic Intergenic -35798 NR_030429 791074 NR_030429 Mir802 Mirn802|mir-802|mmu-mir-802 microRNA 802 0.006410 0.433121 -3.646071 chr1-1139 chr1 188148580 188148736 + 25.4 NA Intergenic Intergenic 258122 NM_009367 21808 Mm.18213 NM_009367 ENSMUSG00000039239 Tgfb2 BB105277|Tgf-beta2|Tgfb-2 transforming growth factor, beta 2 0.006410 0.464968 -4.535810 chr10-496 chr10 74497916 74498072 + 25.4 NA TTS (NM_029781) TTS (NM_029781) -6617 NM_001081412 110279 Mm.478843 NM_001081412 ENSMUSG00000009681 Bcr 5133400C09Rik|AI561783|AI853148|mKIAA3017 breakpoint cluster region 0.012821 0.573248 -5.468673 chr11-910 chr11 116932054 116932210 + 25.4 NA intron (NM_001166506, intron 1 of 15) intron (NM_001166506, intron 1 of 15) 871 NM_001166506 74136 Mm.272312 NM_001166506 ENSMUSG00000020823 Sec14l1 1200017E04Rik|2810012L19Rik|Naa-35 SEC14-like 1 (S. cerevisiae) 0.032051 0.471338 -3.285412 chr1-889 chr1 60721959 60722115 + 25.4 NA Intergenic Intergenic 31104 NM_007642 12487 Mm.255003 NM_007642 ENSMUSG00000026012 Cd28 - CD28 antigen 0.019231 0.420382 1.904647 chr7-565 chr7 127890087 127890243 + 25.4 NA intron (NM_008401, intron 12 of 29) intron (NM_008401, intron 12 of 29) -30550 NM_021334 16411 Mm.22378 NM_021334 ENSMUSG00000030789 Itgax AI449405|Cd11c|Cr4|N418 integrin alpha X 0.012821 0.490446 1.535135 chr1-1095 chr1 167030942 167031098 + 25.4 NA promoter-TSS (NM_145512) promoter-TSS (NM_145512) 88 NM_145512 108735 Mm.288369 NM_145512 ENSMUSG00000040848 Sft2d2 2010005O13Rik|AI506168|AW561909|cI-45 SFT2 domain containing 2 0.108974 0.713376 -4.971418 chr17-519 chr17 55796007 55796163 + 25.4 NA promoter-TSS (NM_025566) promoter-TSS (NM_025566) -114 NM_025566 66443 Mm.2312 NM_025566 ENSMUSG00000044469 Tnfaip8l1 2600017J23Rik tumor necrosis factor, alpha-induced protein 8-like 1 0.096154 0.681529 -1.864483 chr8-541 chr8 75769484 75769640 + 25.4 NA intron (NM_010687, intron 9 of 14) intron (NM_010687, intron 9 of 14) 111611 NM_007975 14065 Mm.12948 NM_007975 ENSMUSG00000050147 F2rl3 PAR4 coagulation factor II (thrombin) receptor-like 3 0.006410 0.414013 -4.594190 chr1-896 chr1 62868251 62868407 + 25.4 NA Intergenic Intergenic 180214 NM_001081436 227195 Mm.74718 NM_001081436 ENSMUSG00000040865 Ino80d 7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594 INO80 complex subunit D 0.006410 0.356688 -3.307542 chr11-691 chr11 29594188 29594344 + 25.4 NA intron (NM_194051, intron 1 of 8) intron (NM_194051, intron 1 of 8) 493 NM_194051 68585 Mm.472973 NM_024226 ENSMUSG00000020458 Rtn4 1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|KIAA4153|NOGO|NSP-CL|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153 reticulon 4 0.044872 0.547771 1.037048 chr17-509 chr17 46947708 46947864 + 25.4 NA Intergenic Intergenic 17692 NM_022015 63856 Mm.275901 NM_022015 ENSMUSG00000023980 Taf8 AW260255|Tbn TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq 0.000000 0.566879 -1.806731 chr9-748 chr9 117708409 117708565 + 25.4 NA Intergenic MER117|DNA|MER1_type -180709 NM_001048146 27215 Mm.92705 NM_001048146 ENSMUSG00000039285 Azi2 AA410145|AZ2 5-azacytidine induced gene 2 0.012821 0.439490 0.595506 chr7-570 chr7 130459706 130459862 + 25.4 NA intron (NM_001004468, intron 4 of 21) intron (NM_001004468, intron 4 of 21) -23919 NM_021314 57752 Mm.86322 NM_001004468 ENSMUSG00000030852 Tacc2 KIAA4180|mKIAA4180 transforming, acidic coiled-coil containing protein 2 0.006410 0.375796 -1.340217 chr2-749 chr2 63722019 63722175 + 25.4 NA Intergenic Intergenic 176749 NM_021716 60344 Mm.438921 NM_021716 ENSMUSG00000075324 Fign fi|fidget fidgetin 0.012821 0.445860 -3.266268 chr11-647 chr11 3713769 3713925 + 25.4 NA intron (NM_152818, intron 2 of 13) intron (NM_152818, intron 2 of 13) 50059 NM_152818 74309 Mm.61022 NM_152818 ENSMUSG00000020435 Osbp2 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 oxysterol binding protein 2 0.000000 0.452229 1.524701 chr4-642 chr4 45720799 45720955 + 25.4 NA intron (NM_001033412, intron 1 of 2) intron (NM_001033412, intron 1 of 2) 16189 NM_001033412 329839 Mm.478668 NM_001033412 Gm829 - predicted gene 829 0.006410 0.439490 -4.442062 chr14-275 chr14 74745012 74745168 + 25.4 NA promoter-TSS (NM_026816) promoter-TSS (NM_026816) -70 NM_026816 68705 Mm.20415 NM_026816 ENSMUSG00000067995 Gtf2f2 1110031C13Rik|AI326315 general transcription factor IIF, polypeptide 2 0.108974 0.617834 -4.552862 chr11-817 chr11 88644623 88644779 + 25.4 NA Intergenic B2_Mm2|SINE|B2 22892 NM_009648 11640 Mm.2969 NM_001042541 ENSMUSG00000018428 Akap1 AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84 A kinase (PRKA) anchor protein 1 0.000000 0.414013 -3.105730 chr1-1090 chr1 166518443 166518599 + 25.4 NA Intergenic Intergenic -114885 NM_019759 56429 Mm.28935 NM_019759 ENSMUSG00000026574 Dpt 1810032B19Rik|5033416F05Rik|EQ-1|Eq1 dermatopontin 0.019231 0.509554 4.908093 chr3-483 chr3 25705038 25705194 + 25.4 NA intron (NM_138666, intron 5 of 7) intron (NM_138666, intron 5 of 7) 639264 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.006410 0.375796 -0.435200 chr4-604 chr4 6166263 6166419 + 25.4 NA Intergenic Intergenic 36437 NM_007824 13122 Mm.57029 NM_007824 ENSMUSG00000028240 Cyp7a1 - cytochrome P450, family 7, subfamily a, polypeptide 1 0.000000 0.414013 -3.306578 chr4-800 chr4 130954814 130954970 + 25.4 NA Intergenic Intergenic 155462 NM_011214 19273 Mm.4860 NM_001083119 ENSMUSG00000028909 Ptpru Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda protein tyrosine phosphatase, receptor type, U 0.006410 0.433121 3.231090 chr3-608 chr3 124553680 124553836 + 25.4 NA Intergenic Lx9|LINE|L1 19355 NR_015460 384775 Mm.46144 NR_015460 1700003H04Rik 4930538K10Rik|4933400D22Rik RIKEN cDNA 1700003H04 gene 0.000000 0.350318 2.302582 chrX-130 chrX 159465173 159465329 + 25.4 NA Intergenic Intergenic -18195 NM_001130513 70008 Mm.13451 NM_001130513 ENSMUSG00000015405 Ace2 2010305L05Rik angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 0.025641 0.484076 6.767653 chr14-264 chr14 62755967 62756123 + 25.4 NA intron (NM_173393, intron 2 of 2) intron (NM_173393, intron 2 of 2) -58376 NM_028228 72400 Mm.379214 NM_028228 ENSMUSG00000021958 Pinx1 2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1|MGC144540 PIN2/TERF1 interacting, telomerase inhibitor 1 0.019231 0.573248 -2.496032 chr8-471 chr8 26740691 26740847 + 25.4 NA Intergenic Intergenic -73775 NM_177089 320165 Mm.308452 NM_177089 ENSMUSG00000065954 Tacc1 4833447E04Rik|AA960202|B230378H13Rik transforming, acidic coiled-coil containing protein 1 0.051282 0.598726 -3.278203 chr5-898 chr5 110471157 110471313 + 25.4 NA promoter-TSS (NM_027922) promoter-TSS (NM_027922) -107 NM_027922 71782 Mm.288442 NM_027922 ENSMUSG00000029501 Ankle2 1110001J12Rik|AI661024|D5Ertd585e ankyrin repeat and LEM domain containing 2 0.147436 0.745223 -5.190704 chr11-810 chr11 87326632 87326788 + 25.4 NA intron (NM_031386, intron 11 of 30) intron (NM_031386, intron 11 of 30) -70615 NM_011129 18952 Mm.2214 NM_011129 ENSMUSG00000020486 Sept4 Bh5|Gm11492|OTTMUSG00000001265|Pnutl2 septin 4 0.000000 0.452229 2.737107 chr14-217 chr14 21376561 21376717 + 25.4 NA intron (NM_028275, intron 4 of 6) intron (NM_028275, intron 4 of 6) 506484 NR_033550 791307 Mm.364384 NR_033550 Gm10248 ENSMUSG00000068680 predicted gene 10248 0.012821 0.484076 -6.737554 chr3-622 chr3 131351370 131351526 + 25.4 NA Intergenic B3|SINE|B2 -17370 NM_028943 74442 Mm.273360 NM_028943 ENSMUSG00000050931 Sgms2 4933405A16Rik|5133401H06Rik|AI854299 sphingomyelin synthase 2 0.006410 0.363057 -8.020301 chr4-734 chr4 102823139 102823295 + 25.4 NA intron (NM_025909, intron 4 of 8) intron (NM_025909, intron 4 of 8) 11440 NM_025909 67013 Mm.30021 NM_025909 ENSMUSG00000035069 Oma1 2010001O09Rik|MPRP-1|ZMPOMA1 OMA1 homolog, zinc metallopeptidase (S. cerevisiae) 0.032051 0.458599 3.791587 chr4-881 chr4 154835892 154836048 + 25.4 NA promoter-TSS (NM_011341) promoter-TSS (NM_011341) 508 NM_080445 117592 Mm.440185 NM_080445 ENSMUSG00000050796 B3galt6 BB129894|GalTII|MGC91010 UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6 0.128205 0.675159 0.409795 chr18-273 chr18 4514105 4514261 + 25.4 NA Intergenic Intergenic -120743 NM_001081963 240185 Mm.33179 NM_001081963 ENSMUSG00000033960 9430020K01Rik 1110056P05Rik|Gm328|KIAA1462|mKIAA1462 RIKEN cDNA 9430020K01 gene 0.000000 0.515924 -3.819231 chr14-252 chr14 47368315 47368471 + 25.4 NA promoter-TSS (NM_172600) promoter-TSS (NM_172600) 91 NM_172600 218989 Mm.85211 NM_172600 ENSMUSG00000036339 6720456H20Rik 5930435P15 RIKEN cDNA 6720456H20 gene 0.160256 0.796178 -3.559099 chr6-452 chr6 8366914 8367070 + 25.4 NA intron (NR_033518, intron 3 of 3) intron (NR_033518, intron 3 of 3) -92603 NM_133236 170772 Mm.210787 NM_133236 ENSMUSG00000029638 Glcci1 2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1 glucocorticoid induced transcript 1 0.012821 0.433121 -7.557398 chr12-533 chr12 21391212 21391368 + 25.4 NA intron (NM_001004364, intron 1 of 26) intron (NM_001004364, intron 1 of 26) 33045 NM_001098168 211914 Mm.358946 NM_001004364 ENSMUSG00000052632 Asap2 Ddef2|Gm1523|Gm592|MGC90837 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.006410 0.458599 -5.027505 chr6-629 chr6 115027451 115027607 + 25.4 NA Intergenic Intergenic -24036 NM_026894 68971 Mm.24937 NM_026894 ENSMUSG00000030316 1500001M20Rik - RIKEN cDNA 1500001M20 gene 0.019231 0.484076 -9.655992 chr2-827 chr2 118942396 118942552 + 25.4 NA Intergenic Intergenic 13674 NM_016907 20732 Mm.104955 NM_016907 ENSMUSG00000027315 Spint1 HAI-1 serine protease inhibitor, Kunitz type 1 0.032051 0.547771 -9.365955 chr9-596 chr9 44107511 44107667 + 25.4 NA intron (NM_027889, intron 5 of 15) intron (NM_027889, intron 5 of 15) 5076 NM_027889 71732 Mm.295013 NM_027889 ENSMUSG00000032127 Vps11 1200011A11Rik vacuolar protein sorting 11 (yeast) 0.006410 0.464968 3.198230 chr5-787 chr5 36708974 36709130 + 25.4 NA intron (NM_030889, intron 1 of 26) intron (NM_030889, intron 1 of 26) 6182 NM_030889 81840 Mm.34113 NM_030889 ENSMUSG00000029093 Sorcs2 N28137|mKIAA1329 sortilin-related VPS10 domain containing receptor 2 0.006410 0.547771 -5.343821 chr1-1054 chr1 140745358 140745514 + 25.4 NA Intergenic Intergenic -34683 NM_001166501 329260 Mm.475093 NM_001166501 ENSMUSG00000056268 Dennd1b 4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik|MGC51484 DENN/MADD domain containing 1B 0.019231 0.439490 -3.328558 chr12-552 chr12 35869191 35869347 + 25.4 NA Intergenic Intergenic -89300 NR_030449 751520 NR_030449 Mir680-3 Mirn680-3 microRNA 680-3 0.012821 0.401274 -8.192164 chr15-446 chr15 102996946 102997102 + 25.4 NA Intergenic CpG -5706 NM_027885 71726 Mm.463445 NM_027885 ENSMUSG00000036061 Smug1 1200013B09Rik|A930006H09Rik|C85220 single-strand selective monofunctional uracil DNA glycosylase 0.089744 0.617834 3.453044 chr7-596 chr7 141265407 141265563 + 25.4 NA promoter-TSS (NM_172116) promoter-TSS (NM_172116) -40 NM_172116 213350 Mm.290953 NM_172116 ENSMUSG00000051007 Pddc1 BC023835|D230016J19Rik|MGC38368 Parkinson disease 7 domain containing 1 0.096154 0.662420 -3.374737 chr1-1070 chr1 157095106 157095262 + 25.4 NA intron (NM_011273, intron 3 of 14) intron (NM_011273, intron 3 of 14) 84478 NM_011273 19775 Mm.266215 NM_011273 ENSMUSG00000026469 Xpr1 Rmc-1|Rmc1|Sxv|Syg1|XR xenotropic and polytropic retrovirus receptor 1 0.012821 0.414013 -3.712478 chr7-403 chr7 15940709 15940865 + 25.4 NA exon (NM_009201, exon 1 of 9) exon (NM_009201, exon 1 of 9) 920 NM_009201 20514 Mm.1056 NM_009201 ENSMUSG00000001918 Slc1a5 AAAT|ASCT2|ATBO|M7V1|M7VS1|MGC46952|R16|RDRC|Slc1a7 solute carrier family 1 (neutral amino acid transporter), member 5 0.102564 0.656051 -4.720310 chr16-345 chr16 36736731 36736887 + 25.4 NA intron (NM_001113401, intron 2 of 5) intron (NM_001113401, intron 2 of 5) -8865 NM_001113405 106389 Mm.432078 NM_001113401 ENSMUSG00000022838 Eaf2 AW048865|FESTA-L|FESTA-S|Festa|Traits|U19 ELL associated factor 2 0.006410 0.426752 -3.120415 chr2-662 chr2 9966476 9966632 + 25.4 NA promoter-TSS (NM_027748) promoter-TSS (NM_027748) -92 NM_027748 209361 Mm.86343 NM_027748 ENSMUSG00000025782 Taf3 140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140 TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor 0.096154 0.675159 -8.835096 chr1-819 chr1 15103893 15104049 + 25.4 NA Intergenic Intergenic -193694 NM_001098528 98741 Mm.156081 XM_001473596 Kcnb2 9630047L19Rik|BB130875|Kv2.2 potassium voltage gated channel, Shab-related subfamily, member 2 0.000000 0.407643 -3.866333 chr2-682 chr2 25990877 25991033 + 25.4 NA Intergenic Intergenic 37610 NM_001039653 16871 Mm.386765 NM_001039653 ENSMUSG00000026934 Lhx3 Lim3|P-LIM|mLIM3|mLim-3 LIM homeobox protein 3 0.032051 0.541401 3.798271 chr10-590 chr10 125855187 125855343 + 25.4 NA Intergenic Intergenic 449055 NM_026858 68876 Mm.276769 NM_001159559 ENSMUSG00000025436 Xrcc6bp1 1110068E08Rik|2410012H02Rik XRCC6 binding protein 1 0.012821 0.369427 -5.704515 chr6-464 chr6 22457040 22457196 + 25.4 NA Intergenic Intergenic -151036 NM_138587 27999 Mm.480606 NM_138587 ENSMUSG00000029672 Fam3c D6Wsu176e|Ilei family with sequence similarity 3, member C 0.000000 0.522293 -5.831373 chr11-868 chr11 105198547 105198703 + 25.4 NA intron (NM_172568, intron 8 of 11) intron (NM_172568, intron 8 of 11) 74200 NM_001039242 632687 Mm.121570 NM_001039242 ENSMUSG00000078627 March10 4933417C16Rik|AV039223|MGC118297|OTTMUSG00000002847|Rnf190 membrane-associated ring finger (C3HC4) 10 0.000000 0.369427 4.223271 chr1-955 chr1 80220161 80220317 + 25.4 NA promoter-TSS (NM_016716) promoter-TSS (NM_016716) -785 NM_016716 26554 Mm.12665 NM_016716 ENSMUSG00000004364 Cul3 AI467304|AW146203|mKIAA0617 cullin 3 0.025641 0.554140 2.635792 chr18-283 chr18 9472290 9472446 + 25.4 NA Intergenic Intergenic -22220 NM_026484 67974 Mm.376607 NM_026484 ENSMUSG00000024286 Ccny 1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik cyclin Y 0.000000 0.464968 1.979728 chr6-481 chr6 34474046 34474202 + 25.4 NA Intergenic Intergenic 67611 NM_007563 12183 Mm.282863 NM_007563 ENSMUSG00000038871 Bpgm AI323730|AL022789|C86192 2,3-bisphosphoglycerate mutase 0.025641 0.433121 -2.310200 chr4-817 chr4 136988632 136988788 + 25.4 NA intron (NM_001081155, intron 10 of 24) intron (NM_001081155, intron 10 of 24) 34932 NM_001081155 110351 Mm.180763 NM_001081155 ENSMUSG00000041351 Rap1gap 1300019I11Rik|2310004O14Rik|AI427470|Rap1ga1 Rap1 GTPase-activating protein 0.019231 0.573248 -3.487200 chr11-760 chr11 70256877 70257033 + 25.4 NA TTS (NM_145429) TTS (NM_145429) 8108 NM_145429 216869 Mm.203747 NM_145429 ENSMUSG00000060216 Arrb2 AI326910|AW122872|RP23-42P20.7 arrestin, beta 2 0.006410 0.426752 -6.764284 chr9-769 chr9 122961612 122961768 + 25.4 NA promoter-TSS (NM_001081188) promoter-TSS (NM_001081188) 213 NM_026917 69035 Mm.28300 NM_026917 ENSMUSG00000025786 Zdhhc3 1110020O22Rik|1810006O10Rik|2210017C02Rik|GODZ|Gramp1|Zfp373 zinc finger, DHHC domain containing 3 0.102564 0.738854 -1.628537 chr13-486 chr13 105263931 105264087 + 25.4 NA 3' UTR (NM_025879, exon 13 of 13) 3' UTR (NM_025879, exon 13 of 13) 33838 NM_144838 218544 Mm.44416 NM_144838 ENSMUSG00000042743 Sgtb C630001O05Rik|MGC27660 small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 0.006410 0.375796 1.306082 chr16-318 chr16 24746514 24746670 + 25.4 NA intron (NM_001145954, intron 3 of 7) intron (NM_001145954, intron 3 of 7) 109389 NM_001145954 210126 Mm.450045 NM_001145952 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma 0.012821 0.547771 -3.301542 chr1-902 chr1 64691205 64691361 + 25.4 NA Intergenic Intergenic -19257 NM_022721 14367 Mm.470210 NM_001042659 ENSMUSG00000045005 Fzd5 5330434N09Rik|AI427138|Fz-5|Fz5|MGC141642|mFz5 frizzled homolog 5 (Drosophila) 0.032051 0.477707 -6.210592 chr6-531 chr6 61471920 61472076 + 25.4 NA intron (NM_001164316, intron 5 of 10) intron (NM_001164316, intron 5 of 10) 362096 NM_183310 232035 Mm.376946 XM_908676 ENSMUSG00000039578 Fam190a 6230405M12Rik|C130092O11Rik|MGC130404|MGC130405 family with sequence similarity 190, member A 0.000000 0.458599 1.885369 chr5-872 chr5 99620535 99620691 + 25.4 NA intron (NR_030692, intron 2 of 3) intron (NR_030692, intron 2 of 3) -127384 NM_145839 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.019231 0.617834 4.561294 chr8-467 chr8 18846101 18846257 + 25.4 NA promoter-TSS (NM_026792) promoter-TSS (NM_026792) -76 NM_026792 52123 Mm.24117 NM_026792 ENSMUSG00000031467 Agpat5 1110013A05Rik|D8Ertd319e 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) 0.083333 0.605096 -3.680589 chr1-979 chr1 91598410 91598566 + 25.4 NA intron (NM_178119, intron 12 of 17) intron (NM_178119, intron 12 of 17) -83425 NR_015540 74403 Mm.444291 NR_015540 4933400F21Rik 1700091C04Rik|4930565K10Rik RIKEN cDNA 4933400F21 gene 0.019231 0.509554 -6.132174 chr3-540 chr3 85009743 85009899 + 25.4 NA intron (NM_001177773, intron 4 of 13) intron (NM_001177773, intron 4 of 13) -28316 NM_080428 50754 Mm.196475 NM_001177773 ENSMUSG00000028086 Fbxw7 1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10 F-box and WD-40 domain protein 7 0.000000 0.420382 0.573818 chr4-772 chr4 119446588 119446744 + 25.4 NA intron (NM_010657, intron 1 of 8) intron (NM_010657, intron 1 of 8) 134354 NM_010657 16656 Mm.422538 NM_010657 ENSMUSG00000028634 Hivep3 2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3 human immunodeficiency virus type I enhancer binding protein 3 0.032051 0.554140 -6.693024 chrX-104 chrX 99997809 99997965 + 25.4 NA intron (NM_009197, intron 1 of 5) intron (NM_009197, intron 1 of 5) 26820 NM_009197 20502 Mm.388973 NM_009197 ENSMUSG00000033965 Slc16a2 AW105741|Mct8|Xpct solute carrier family 16 (monocarboxylic acid transporters), member 2 0.006410 0.445860 -1.538784 chr18-360 chr18 65023491 65023647 + 25.4 NA intron (NM_001114386, intron 1 of 30) intron (NM_001114386, intron 1 of 30) 10445 NM_001114386 83814 Mm.98668 NM_001114386 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b neural precursor cell expressed, developmentally down-regulated gene 4-like 0.019231 0.496815 -6.881423 chr5-989 chr5 137271275 137271431 + 25.4 NA promoter-TSS (NM_011962) promoter-TSS (NM_011962) -292 NM_011962 26433 Mm.251003 NM_011962 ENSMUSG00000004846 Plod3 AI414586|LH3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 0.044872 0.496815 -7.290650 chr9-646 chr9 60875121 60875277 + 25.4 NA Intergenic Intergenic 282646 NM_028283 72565 Mm.68819 NM_028283 ENSMUSG00000034485 Uaca 2700059D02Rik|nucling uveal autoantigen with coiled-coil domains and ankyrin repeats 0.000000 0.535032 -0.742319 chr11-897 chr11 113286137 113286293 + 25.4 NA intron (NM_001166503, intron 4 of 9) intron (NM_001166503, intron 4 of 9) 95690 NM_001166503 69806 Mm.341021 NM_001166503 ENSMUSG00000041654 Slc39a11 1810074D23Rik solute carrier family 39 (metal ion transporter), member 11 0.019231 0.566879 1.775647 chr13-480 chr13 102227930 102228086 + 25.4 NA Intergenic Intergenic -294324 NM_022885 69048 Mm.402215 NM_022885 ENSMUSG00000021629 Slc30a5 1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1 solute carrier family 30 (zinc transporter), member 5 0.000000 0.343949 -1.564041 chr17-522 chr17 56295023 56295179 + 25.4 NA promoter-TSS (NM_153152) promoter-TSS (NM_153152) -211 NM_153152 224904 Mm.34002 NM_153152 ENSMUSG00000049760 2410015M20Rik QIL1 RIKEN cDNA 2410015M20 gene 0.083333 0.605096 3.103115 chr1-994 chr1 99492434 99492590 + 25.4 NA promoter-TSS (NM_133825) promoter-TSS (NM_133825) -88 NM_133825 52392 Mm.12309 NM_133825 ENSMUSG00000044768 D1Ertd622e AI987691|AW047450 DNA segment, Chr 1, ERATO Doi 622, expressed 0.153846 0.802548 -6.192168 chr1-1129 chr1 184298722 184298878 + 25.4 NA 3' UTR (NM_173378, exon 18 of 18) 3' UTR (NM_173378, exon 18 of 18) 52959 NM_173378 209456 Mm.287450 NM_173378 ENSMUSG00000026510 Trp53bp2 53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550 transformation related protein 53 binding protein 2 0.019231 0.541401 -0.444714 chr2-772 chr2 74058758 74058914 + 25.4 NA Intergenic Intergenic 320951 NM_001110209 69605 Mm.156113 NM_001110209 ENSMUSG00000009207 Lnp 2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Ul|ulnaless limb and neural patterns 0.012821 0.439490 -1.612859 chr2-763 chr2 71168580 71168736 + 25.4 NA promoter-TSS (NM_172436) promoter-TSS (NM_172436) -265 NM_172436 78830 Mm.146696 NM_172436 ENSMUSG00000027010 Slc25a12 2610002D09Rik|AI839531|B230107K20Rik|BB129864 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 0.044872 0.636943 -1.805465 chr13-492 chr13 111722356 111722512 + 25.4 NA Intergenic Intergenic 206513 NM_152804 20620 Mm.380 NM_152804 ENSMUSG00000021701 Plk2 Snk polo-like kinase 2 (Drosophila) 0.032051 0.452229 -3.776366 chr6-561 chr6 86437681 86437837 + 25.4 NA Intergenic Intergenic 33480 NR_027370 232196 Mm.333219 NM_146170 ENSMUSG00000046679 C87436 MGC25529 expressed sequence C87436 0.038462 0.522293 -5.359476 chr11-778 chr11 77466514 77466670 + 25.4 NA Intergenic (CTGTG)n|Simple_repeat|Simple_repeat -35741 NM_001024205 68564 Mm.428996 NM_001024205 ENSMUSG00000037857 Nufip2 1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321 nuclear fragile X mental retardation protein interacting protein 2 0.000000 0.484076 0.652260 chr4-844 chr4 147791866 147792022 + 25.4 NA intron (NM_001159344, intron 18 of 20) intron (NM_001159344, intron 18 of 20) 143753 NM_001159344 69743 Mm.233879 XM_001472991 ENSMUSG00000028977 Casz1 2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e|MGC31683 castor homolog 1, zinc finger (Drosophila) 0.019231 0.592357 -4.523882 chr1-972 chr1 88362994 88363150 + 25.4 NA Intergenic Intergenic 5166 NM_008972 19231 Mm.19187 NM_008972 ENSMUSG00000026238 Ptma MGC102090|MGC103390|Thym prothymosin alpha 0.025641 0.522293 9.576017 chr11-890 chr11 109466428 109466584 + 25.4 NA promoter-TSS (NM_021880) promoter-TSS (NM_021880) -532 NM_021880 19084 Mm.30039 NM_021880 ENSMUSG00000020612 Prkar1a 1300018C22Rik|RIalpha|Tse-1|Tse1 protein kinase, cAMP dependent regulatory, type I, alpha 0.064103 0.656051 -2.945496 chr12-698 chr12 105345747 105345903 + 25.4 NA intron (NM_001042699, intron 15 of 18) intron (NM_001042699, intron 15 of 18) 53902 NM_001042699 212073 Mm.212688 NM_001042699 ENSMUSG00000054150 4831426I19Rik MGC106312|nesprin-3 RIKEN cDNA 4831426I19 gene 0.000000 0.509554 -4.769458 chr4-789 chr4 128244311 128244467 + 25.4 NA intron (NM_018774, intron 8 of 13) intron (NM_018774, intron 8 of 13) -17172 NM_001009819 215493 Mm.300900 NM_001009819 ENSMUSG00000028794 A3galt2 Gm433|iGb3 alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) 0.012821 0.535032 2.767828 chr13-465 chr13 98487876 98488032 + 25.4 NA Intergenic MER5B|DNA|MER1_type 146151 NM_007930 13803 Mm.481214 NM_007930 ENSMUSG00000041773 Enc1 Nrpb|PIG10 ectodermal-neural cortex 1 0.019231 0.477707 -6.170436 chr2-686 chr2 27236070 27236226 + 25.4 NA intron (NM_009500, intron 1 of 27) intron (NM_009500, intron 1 of 27) 12686 NM_009500 22325 Mm.179011 NM_009500 ENSMUSG00000009621 Vav2 2810040F13Rik|AI847175 vav 2 oncogene 0.000000 0.515924 5.354107 chr5-938 chr5 120727719 120727875 + 25.4 NA intron (NM_133902, intron 1 of 7) intron (NM_133902, intron 1 of 7) 5583 NM_133902 257635 Mm.5162 NM_133902 ENSMUSG00000029596 Sdsl 4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH serine dehydratase-like 0.012821 0.598726 -3.111908 chr4-674 chr4 62147625 62147781 + 25.4 NA intron (NM_134257, intron 10 of 15) intron (NM_134257, intron 10 of 15) 41671 NM_134257 50780 Mm.286753 NM_001081650 ENSMUSG00000059810 Rgs3 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S regulator of G-protein signaling 3 0.006410 0.547771 4.067708 chr6-444 chr6 5762751 5762907 + 25.4 NA intron (NM_001191026, intron 6 of 16) intron (NM_001191026, intron 6 of 16) 87191 NM_001191026 13426 Mm.20893 NM_001191023 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 0.012821 0.458599 -4.177282 chr10-523 chr10 82264751 82264907 + 25.4 NA intron (NM_001042523, intron 1 of 14) intron (NM_001042523, intron 1 of 14) 1080 NM_001042523 50493 Mm.471159 NM_001042513 ENSMUSG00000020250 Txnrd1 TR|TR1|TrxR1 thioredoxin reductase 1 0.006410 0.522293 -8.288051 chr7-522 chr7 112062150 112062306 + 25.4 NA intron (NM_177282, intron 2 of 19) intron (NM_177282, intron 2 of 19) 45212 NM_001193305 320878 Mm.52312 NM_001193305 ENSMUSG00000038244 Mical2 5330438E18Rik|9530064J02|KIAA0750|mKIAA0750 microtubule associated monoxygenase, calponin and LIM domain containing 2 0.006410 0.496815 -8.876510 chr1-838 chr1 34379264 34379373 + 25.4 NA Intergenic Intergenic 4900 NM_027159 69668 Mm.379170 NM_027159 ENSMUSG00000042111 Ccdc115 2310061I09Rik|Ccp1 coiled-coil domain containing 115 0.055046 0.418182 2.024076 chr11-793 chr11 81473364 81473520 + 25.4 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) -83708 NM_001033765 237880 Mm.435528 NM_001033765 1700071K01Rik - RIKEN cDNA 1700071K01 gene 0.006410 0.420382 -6.430130 chr12-663 chr12 87047066 87047222 + 25.4 NA intron (NM_029601, intron 4 of 7) intron (NM_029601, intron 4 of 7) 75479 NM_029601 76411 Mm.292345 NM_029601 ENSMUSG00000007867 1700019E19Rik R75064 RIKEN cDNA 1700019E19 gene 0.019231 0.509554 -5.267653 chr16-396 chr16 94383539 94383695 + 25.4 NA intron (NM_139145, intron 1 of 9) intron (NM_139145, intron 1 of 9) 13037 NM_139145 110948 Mm.30921 NM_139145 ENSMUSG00000040820 Hlcs 410I21.SP6|D16Jhu34 holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) 0.012821 0.471338 1.790254 chr1-1003 chr1 108435632 108435788 + 25.4 NA intron (NM_009741, intron 1 of 1) intron (NM_009741, intron 1 of 1) 106127 NM_009741 12043 Mm.257460 XM_001476583 ENSMUSG00000057329 Bcl2 AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik B-cell leukemia/lymphoma 2 0.012821 0.420382 -1.408477 chr4-681 chr4 76263739 76263895 + 25.4 NA Intergenic Intergenic -198287 NM_011211 19266 Mm.403663 NM_001014288 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|MGC113757|MGC36851 protein tyrosine phosphatase, receptor type, D 0.000000 0.433121 -2.284054 chr6-597 chr6 97305239 97305395 + 25.4 NA intron (NM_145148, intron 8 of 23) intron (NM_145148, intron 8 of 23) -87074 NM_001081157 320502 Mm.68163 NM_001081157 ENSMUSG00000044086 Lmod3 5430424A14Rik|MGC156399 leiomodin 3 (fetal) 0.006410 0.515924 -1.635144 chr9-620 chr9 53010448 53010604 + 25.4 NA promoter-TSS (NM_029936) promoter-TSS (NM_029936) -19 NM_029936 77591 Mm.133560 XM_001481328 ENSMUSG00000053289 Ddx10 4632415A01Rik|AI646054|MGC91294 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 0.096154 0.624204 -6.648997 chr11-804 chr11 85840906 85841062 + 25.4 NA Intergenic Intergenic 128025 NM_172798 21387 Mm.275336 NM_011536 ENSMUSG00000000094 Tbx4 3930401C23 T-box 4 0.006410 0.503185 -6.414583 chr5-790 chr5 38327362 38327404 + 25.4 NA promoter-TSS (NM_026959) promoter-TSS (NM_026959) -100 NM_026959 71116 Mm.18959 NM_026959 ENSMUSG00000029125 Stx18 1810035L21Rik|4933425D03Rik|AU041562 syntaxin 18 0.071429 0.558140 1.458165 chr16-381 chr16 92066656 92066812 + 25.4 NA Intergenic B3|SINE|B2 -114513 NM_134110 246133 Mm.156736 NM_134110 ENSMUSG00000039672 Kcne2 2200002I16Rik|AW048273|MiRP1 potassium voltage-gated channel, Isk-related subfamily, gene 2 0.000000 0.566879 -0.277299 chr11-782 chr11 78641337 78641493 + 25.4 NA Intergenic Intergenic -1374 NM_001076681 66274 Mm.477207 NM_001076681 ENSMUSG00000072640 1810012P15Rik - RIKEN cDNA 1810012P15 gene 0.012821 0.439490 3.258678 chr4-797 chr4 130526482 130526638 + 25.4 NA Intergenic Intergenic 310100 NM_010769 17180 Mm.271796 NM_010769 ENSMUSG00000040533 Matn1 CMP|Crtm|Mat1|matrilin-1 matrilin 1, cartilage matrix protein 0.025641 0.566879 -5.120075 chr6-457 chr6 13762349 13762505 + 25.4 NA Intergenic Intergenic 27421 NM_145066 64450 Mm.167625 NM_145066 ENSMUSG00000048216 Gpr85 2900026B03Rik|DKFZp761L08121 G protein-coupled receptor 85 0.019231 0.414013 2.373584 chr2-819 chr2 113410986 113411142 + 25.4 NA intron (NM_001043322, intron 14 of 18) intron (NM_001043322, intron 14 of 18) 148423 NM_011824 23892 Mm.474483 NM_011824 ENSMUSG00000074934 Grem1 Cktsf1b1|Drm|ld gremlin 1 0.012821 0.375796 -0.292662 chr8-606 chr8 127898914 127899055 + 25.4 NA promoter-TSS (NM_016909) promoter-TSS (NM_016909) -102 NM_016909 53424 Mm.5248 NM_016909 ENSMUSG00000056820 Tsnax R74833|Trax translin-associated factor X 0.120567 0.711268 -3.841501 chr16-360 chr16 75980824 75980980 + 25.4 NA Intergenic Intergenic -188956 NM_023380 67742 Mm.131406 NM_023380 ENSMUSG00000022876 Samsn1 4930571B16Rik|930571B16Rik|Hacs1 SAM domain, SH3 domain and nuclear localization signals, 1 0.025641 0.433121 -3.577753 chr17-468 chr17 31587894 31588050 + 25.4 NA Intergenic Intergenic -3470 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Msk|Sik|Snf1lk salt inducible kinase 1 0.012821 0.541401 -2.948136 chr18-271 chr18 3893709 3893865 + 25.4 NA Intergenic Intergenic -272042 NM_026092 67328 Mm.158148 NM_026092 ENSMUSG00000024233 Lyzl1 1700038F02Rik|Lyc2 lysozyme-like 1 0.006410 0.426752 1.532002 chr4-688 chr4 81541756 81541912 + 25.4 NA Intergenic L1MA7|LINE|L1 434705 NM_001113210 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.000000 0.394904 -4.339329 chr15-374 chr15 63827731 63827887 + 25.4 NA intron (NM_144846, intron 1 of 11) intron (NM_144846, intron 1 of 11) 62312 NM_144846 223601 Mm.246108 NM_144846 ENSMUSG00000022378 Fam49b 0910001A06Rik|AW122079 family with sequence similarity 49, member B 0.121795 0.713376 0.712583 chr16-376 chr16 90031436 90031592 + 25.4 NA 5' UTR (NR_033476, exon 1 of 1) 5' UTR (NR_033476, exon 1 of 1) 419 NR_033476 100038709 Mm.310902 NR_033476 Gm10789 ENSMUSG00000074924 predicted gene 10789 0.064103 0.624204 -6.132166 chr5-845 chr5 82467331 82467487 + 25.4 NA intron (NM_198702, intron 6 of 27) intron (NM_198702, intron 6 of 27) 371256 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.012821 0.414013 0.273202 chr15-368 chr15 59144383 59144539 + 25.4 NA promoter-TSS (NM_009270) promoter-TSS (NM_009270) -311 NM_009270 20775 Mm.296169 NM_009270 ENSMUSG00000022351 Sqle AI323792 squalene epoxidase 0.096154 0.745223 -3.937119 chr4-865 chr4 151169352 151169508 + 25.4 NA promoter-TSS (NM_009079) promoter-TSS (NM_009079) -247 NM_009079 19934 Mm.307846 NM_009079 ENSMUSG00000028936 Rpl22 2700038K18Rik ribosomal protein L22 0.051282 0.541401 0.707171 chr7-579 chr7 132870978 132871134 + 25.4 NA intron (NM_009980, intron 2 of 10) intron (NM_009980, intron 2 of 10) -17466 NM_001170744 13017 Mm.389984 NM_001170744 ENSMUSG00000030970 Ctbp2 AA407280|D7Ertd45e|Gtrgeo6|Ribeye C-terminal binding protein 2 0.019231 0.547771 -2.603282 chr8-562 chr8 112454980 112455136 + 25.4 NA promoter-TSS (NM_178380) promoter-TSS (NM_178380) -56 NM_175646 234723 Mm.37667 NM_175646 ENSMUSG00000031723 Txnl4b AI595343|D530025J19Rik|DLP|Dim2 thioredoxin-like 4B 0.089744 0.515924 -4.366383 chr3-561 chr3 96570943 96571099 + 25.4 NA Intergenic Intergenic -39568 NM_027126 69585 Mm.171314 NM_027126 ENSMUSG00000038403 Hfe2 2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin hemochromatosis type 2 (juvenile) (human homolog) 0.000000 0.490446 -3.838745 chr5-943 chr5 120824317 120824473 + 25.4 NA intron (NM_145853, intron 2 of 27) intron (NM_145853, intron 2 of 27) 24835 NM_145853 252972 Mm.114054 NM_145853 ENSMUSG00000032741 Tpcn1 5730403B01Rik|Tpc1|mKIAA1169 two pore channel 1 0.038462 0.624204 -4.200621 chr5-900 chr5 110579184 110579340 + 25.4 NA TTS (NM_153400) TTS (NM_153400) 4075 NM_001164834 231602 Mm.55948 NM_001164833 ENSMUSG00000029503 P2rx2 MGC129148|MGC129149|P2X2a|P2x2 purinergic receptor P2X, ligand-gated ion channel, 2 0.000000 0.490446 -0.731703 chr10-529 chr10 84613531 84613687 + 25.4 NA intron (NM_007771, intron 1 of 12) intron (NM_007771, intron 1 of 12) 1244 NM_007771 12952 Mm.26237 NM_007771 ENSMUSG00000020038 Cry1 AU020726|AU021000|Phll1 cryptochrome 1 (photolyase-like) 0.019231 0.439490 1.306082 chr12-734 chr12 112676049 112676205 + 25.4 NA Intergenic Intergenic 82112 NM_001097621 668303 Mm.313104 XM_001477486 ENSMUSG00000021294 Kif26a KIAA1236|mKIAA1236 kinesin family member 26A 0.012821 0.484076 4.816503 chr1-948 chr1 79471915 79472071 + 25.4 NA Intergenic MIRb|SINE|MIR 79003 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 0.012821 0.439490 -3.995518 chr6-547 chr6 77363195 77363351 + 25.4 NA intron (NM_001109764, intron 8 of 19) intron (NM_001109764, intron 8 of 19) 191048 NM_028880 74342 Mm.292568 NM_028880 ENSMUSG00000060780 Lrrtm1 4632401D06Rik|AW125451 leucine rich repeat transmembrane neuronal 1 0.012821 0.439490 -4.206570 chr17-450 chr17 28418738 28418894 + 25.4 NA promoter-TSS (NM_001168514) promoter-TSS (NM_001168514) -114 NM_001168508 26416 Mm.311337 NM_001168508 ENSMUSG00000053436 Mapk14 CSBP2|Crk1|Csbp1|MGC102436|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha mitogen-activated protein kinase 14 0.147436 0.745223 -5.768444 chr9-565 chr9 22344195 22344351 + 25.4 NA intron (NM_178415, intron 10 of 22) intron (NM_178415, intron 10 of 22) 118157 NM_178415 319845 Mm.176725 NM_178415 ENSMUSG00000035919 Bbs9 E130103I17Rik Bardet-Biedl syndrome 9 (human) 0.006410 0.452229 1.535135 chr11-715 chr11 52951269 52951425 + 25.4 NA intron (NM_177059, intron 6 of 15) intron (NM_177059, intron 6 of 15) 192555 NM_008300 15525 Mm.239865 NM_008300 ENSMUSG00000020361 Hspa4 70kDa|AI317151|APG-2|Hsp110|Hsp70RY|KIAA4025|mKIAA4025 heat shock protein 4 0.012821 0.503185 -5.197163 chr2-839 chr2 129425148 129425304 + 25.4 NA Intergenic Intergenic -43917 NM_018863 18610 Mm.6239 NM_018863 ENSMUSG00000027400 Pdyn Dyn prodynorphin 0.006410 0.401274 1.052619 chr2-705 chr2 32184917 32184968 + 25.4 NA promoter-TSS (NM_028412) promoter-TSS (NM_028412) -300 NM_028412 68379 Mm.170508 NM_028412 ENSMUSG00000039205 Ciz1 0610038H21Rik|2900056O04Rik|LSFR1|ZNF356 CDKN1A interacting zinc finger protein 1 0.176471 0.692308 -11.877701 chr3-530 chr3 79479900 79480056 + 25.4 NA intron (NM_001142953, intron 1 of 4) intron (NM_001142953, intron 1 of 4) 48676 NM_001142953 100233207 Mm.373801 NM_001142953 LOC100233207 - hypothetical protein LOC100233207 0.000000 0.452229 -2.305603 chr7-541 chr7 117100989 117101145 + 25.4 NA Intergenic Intergenic -71060 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.006410 0.458599 -7.896436 chr12-547 chr12 30603589 30603745 + 25.4 NA TTS (NM_181395) TTS (NM_181395) 79580 NM_181395 69675 Mm.251774 NM_181395 ENSMUSG00000020674 Pxdn 2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230 peroxidasin homolog (Drosophila) 0.006410 0.382166 3.974607 chr13-437 chr13 63275069 63275225 + 25.4 NA intron (NM_028079, intron 12 of 14) intron (NM_028079, intron 12 of 14) -34558 NR_029530 387217 NR_029530 Mir23b Mirn23b|mmu-mir-23b microRNA 23b 0.012821 0.407643 -6.667465 chr1-965 chr1 82596540 82596696 + 25.4 NA intron (NM_007734, intron 50 of 51) intron (NM_007734, intron 50 of 51) -7323 NM_029409 75734 Mm.479553 NM_029409 ENSMUSG00000026150 Mff 5230400G24Rik|AI314724 mitochondrial fission factor 0.006410 0.420382 -4.958932 chr17-542 chr17 71008963 71009119 + 25.4 NA intron (NM_010867, intron 25 of 37) intron (NM_010867, intron 25 of 37) -79793 NM_022882 64898 Mm.227924 NM_001164885 ENSMUSG00000024052 Lpin2 2610511G02Rik|AI481352|AW742896 lipin 2 0.019231 0.496815 3.015078 chr1-980 chr1 91799455 91799611 + 25.4 NA exon (NM_139152, exon 4 of 6) exon (NM_139152, exon 4 of 6) -37186 NM_010262 14472 Mm.204730 NM_010262 ENSMUSG00000034486 Gbx2 D130058E05Rik|Gbx-2|MMoxA|Stra7 gastrulation brain homeobox 2 0.192308 0.796178 -4.720310 chr11-769 chr11 74304368 74304524 + 25.4 NA intron (NM_001015046, intron 2 of 24) intron (NM_001015046, intron 2 of 24) 101907 NM_001015046 380711 Mm.425690 NM_001015046 ENSMUSG00000038807 Rap1gap2 AU067654|Garnl4|Gm1561|MGC130388|RP23-20M18.15|mKIAA1039 RAP1 GTPase activating protein 2 0.006410 0.503185 -3.083646 chr3-531 chr3 80455150 80455306 + 25.4 NA Intergenic Intergenic 433490 NM_013540 14800 Mm.220224 NM_001039195 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2 glutamate receptor, ionotropic, AMPA2 (alpha 2) 0.000000 0.356688 -2.496032 chr17-566 chr17 87701762 87701918 + 25.4 NA intron (NM_199251, intron 1 of 1) intron (NM_199251, intron 1 of 1) 4480 NM_199251 210741 Mm.312046 NM_199251 ENSMUSG00000050138 Kcnk12 mntk1 potassium channel, subfamily K, member 12 0.025641 0.535032 -3.889672 chr4-810 chr4 135127814 135127970 + 25.4 NA promoter-TSS (NM_010178) promoter-TSS (NM_010178) -275 NM_001080387 14105 Mm.472035 NM_001080387 ENSMUSG00000028676 Srsf10 FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 0.108974 0.675159 -7.300791 chr12-638 chr12 80576589 80576745 + 25.4 NA exon (NM_009014, exon 8 of 11) exon (NM_009014, exon 8 of 11) 360546 NM_009014 19363 Mm.341756 NM_009014 Rad51l1 AI553500|R51H2|Rad51b|mREC2 RAD51-like 1 (S. cerevisiae) 0.019231 0.477707 -5.841928 chr7-450 chr7 63835840 63835996 + 25.4 NA Intergenic Intergenic -18053 NM_021366 50794 Mm.240473 NM_021366 ENSMUSG00000052040 Klf13 0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 0.006410 0.541401 -2.117759 chr5-944 chr5 120851372 120851528 + 25.4 NA intron (NM_029408, intron 1 of 4) intron (NM_029408, intron 1 of 4) 1811 NM_029408 75732 Mm.425285 NM_029408 ENSMUSG00000029601 Iqcd 4933433C09Rik|AI662646 IQ motif containing D 0.038462 0.528662 -4.564671 chr13-374 chr13 30667331 30667487 + 25.4 NA promoter-TSS (NM_134068) promoter-TSS (NM_134068) -151 NM_134068 105352 Mm.289646 NM_001037955 ENSMUSG00000069255 Dusp22 1110028K04Rik|AW212235|JKAP|JSP1|MGC118031|MKPX dual specificity phosphatase 22 0.179487 0.770701 -5.318985 chr18-338 chr18 53363925 53364081 + 25.4 NA Intergenic Intergenic -7027 NM_029394 69226 Mm.32414 NM_029394 ENSMUSG00000024535 Snx24 2810011K15Rik|5730433I16Rik|AI451341 sorting nexing 24 0.000000 0.471338 -0.194632 chr1-1027 chr1 129601451 129601607 + 25.4 NA promoter-TSS (NM_028399) promoter-TSS (NM_028399) -180 NM_028399 72949 Mm.392269 NM_028399 ENSMUSG00000026349 Ccnt2 2900041I18Rik|C81304|CycT2 cyclin T2 0.083333 0.598726 -1.406640 chr2-656 chr2 5812478 5812634 + 25.4 NA promoter-TSS (NM_021305) promoter-TSS (NM_021305) 69 NM_021305 57743 Mm.21435 NM_021305 ENSMUSG00000025816 Sec61a2 - Sec61, alpha subunit 2 (S. cerevisiae) 0.121795 0.732484 -4.655275 chr10-446 chr10 16327276 16327432 + 25.4 NA Intergenic Intergenic -1085289 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.000000 0.439490 1.391267 chr10-502 chr10 76461497 76461653 + 25.4 NA Intergenic Intergenic -15399 NM_031196 20509 Mm.265060 NM_031196 ENSMUSG00000001436 Slc19a1 AI323572|RFC|RFC-1|RFC1 solute carrier family 19 (sodium/hydrogen exchanger), member 1 0.025641 0.464968 -3.126034 chr19-230 chr19 32262305 32262461 + 25.4 NA intron (NM_144792, intron 5 of 9) intron (NM_144792, intron 5 of 9) 14627 NM_001168526 208449 Mm.329810 NM_001168525 ENSMUSG00000040451 Sgms1 9530058O11Rik|AI841905|C80702|MGC30540|Mob|Sms1|Sor1|Tmem23 sphingomyelin synthase 1 0.012821 0.471338 -5.580698 chr2-794 chr2 92626131 92626287 + 25.4 NA Intergenic Intergenic -89730 NM_030725 80976 Mm.33490 NM_030725 ENSMUSG00000027220 Syt13 5730409J20Rik|AI549909|mKIAA1427 synaptotagmin XIII 0.019231 0.509554 -3.642712 chr5-1035 chr5 149052626 149052782 + 25.4 NA intron (NR_028285, intron 1 of 1) intron (NR_028285, intron 1 of 1) 516 NR_028285 70138 Mm.417834 XM_001473363 2210417A02Rik AV081004 RIKEN cDNA 2210417A02 gene 0.006410 0.528662 -0.815332 chr12-578 chr12 51445664 51445820 + 25.4 NA intron (NM_008858, intron 1 of 18) intron (NM_008858, intron 1 of 18) 125488 NM_008858 18760 Mm.133719 NM_008858 ENSMUSG00000002688 Prkd1 PKD|PKD1|Pkcm|Prkcm protein kinase D1 0.006410 0.458599 3.221570 chr2-899 chr2 167410916 167411072 + 25.4 NA Intergenic MIR|SINE|MIR 28582 NR_015500 329562 Mm.123101 NM_177851 A530013C23Rik - RIKEN cDNA A530013C23 gene 0.019231 0.503185 -2.468555 chr14-245 chr14 33838359 33838515 + 25.4 NA intron (NM_008166, intron 3 of 15) intron (NM_008166, intron 3 of 15) 114737 NR_029774 723847 NR_029774 Mir346 Mirn346|mmu-mir-346 microRNA 346 0.019231 0.547771 -5.840115 chr12-647 chr12 82212476 82212632 + 25.4 NA intron (NM_080440, intron 2 of 7) intron (NM_080440, intron 2 of 7) 39474 NM_001167920 110893 Mm.443748 NM_001167920 ENSMUSG00000053302 Slc8a3 AW742262|MGC90626|Ncx3 solute carrier family 8 (sodium/calcium exchanger), member 3 0.032051 0.484076 -8.014941 chr3-523 chr3 69886047 69886203 + 25.4 NA Intergenic Intergenic 61700 NM_001164210 66183 Mm.45481 NM_001164210 ENSMUSG00000043461 1110032A04Rik ADMP|Sssptb RIKEN cDNA 1110032A04 gene 0.006410 0.477707 5.176252 chr7-484 chr7 87992558 87992714 + 25.4 NA intron (NM_001143834, intron 10 of 10) intron (NM_001143834, intron 10 of 10) -160648 NM_009982 13032 Mm.322945 NM_009982 ENSMUSG00000030560 Ctsc AI047818|DPP1|DPPI cathepsin C 0.019231 0.433121 -0.015979 chr8-571 chr8 122042563 122042719 + 25.4 NA intron (NM_019707, intron 7 of 13) intron (NM_019707, intron 7 of 13) -187873 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 0.000000 0.509554 -0.414520 chr6-663 chr6 145408232 145408388 + 25.4 NA Intergenic Intergenic -16226 NM_028742 74071 Mm.441497 NM_028742 ENSMUSG00000054966 Ifltd1 4933403M22Rik|AI482300|Lmna-rs1|Lmna1 intermediate filament tail domain containing 1 0.012821 0.458599 4.908093 chr3-611 chr3 125884573 125884729 + 25.4 NA intron (NM_011674, intron 2 of 5) intron (NM_011674, intron 2 of 5) 45921 NM_011674 22239 Mm.306021 NM_011674 ENSMUSG00000032854 Ugt8a AI850488|AW455908|Cgt|Ugt8|mCerGT UDP galactosyltransferase 8A 0.006410 0.414013 -2.578300 chr12-723 chr12 111082538 111082694 + 25.4 NA intron (NM_030238, intron 29 of 76) intron (NM_030238, intron 29 of 76) 33415 NM_030238 13424 Mm.181430 NM_030238 ENSMUSG00000018707 Dync1h1 9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325 dynein cytoplasmic 1 heavy chain 1 0.012821 0.579618 1.968998 chr3-596 chr3 118990288 118990444 + 25.4 NA intron (NM_170778, intron 12 of 22) intron (NM_170778, intron 12 of 22) 436185 NM_170778 99586 Mm.27907 NM_170778 ENSMUSG00000033308 Dpyd AI315208|DPD|E330028L06Rik|MGC37940 dihydropyrimidine dehydrogenase 0.006410 0.382166 -1.572935 chr8-493 chr8 42614005 42614161 + 25.4 NA intron (NM_001005863, intron 1 of 13) intron (NM_001005863, intron 1 of 13) 18460 NM_001005863 102103 Mm.149438 NM_001005863 ENSMUSG00000045636 Mtus1 AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MGC115798|MTSG1|mKIAA1288 mitochondrial tumor suppressor 1 0.019231 0.541401 0.500623 chr6-534 chr6 66893872 66894028 + 25.4 NA intron (NM_001177560, intron 3 of 4) intron (NM_001177560, intron 3 of 4) 67482 NM_001177558 14701 Mm.234342 NM_001177556 ENSMUSG00000036402 Gng12 2010305F15Rik|AA536815|AI115529|AI314170|AI842738 guanine nucleotide binding protein (G protein), gamma 12 0.012821 0.503185 -0.167677 chr5-997 chr5 139428959 139429115 + 25.4 NA intron (NM_001081265, intron 9 of 12) intron (NM_001081265, intron 9 of 12) 25173 NM_001081265 433956 Mm.5547 XM_001479208 ENSMUSG00000025857 Heatr2 BC053401|C76907|MGC60818 HEAT repeat containing 2 0.012821 0.566879 -3.440977 chr11-752 chr11 69141559 69141715 + 25.4 NA promoter-TSS (NM_010599) promoter-TSS (NM_010599) -815 NM_010599 16499 Mm.232472 NM_010599 ENSMUSG00000018470 Kcnab3 C330022D06Rik|Kcnab4|mKv(beta)4 potassium voltage-gated channel, shaker-related subfamily, beta member 3 0.032051 0.477707 10.434765 chr2-895 chr2 166625710 166625866 + 25.4 NA intron (NM_023565, intron 14 of 24) intron (NM_023565, intron 14 of 24) 28488 NM_023565 110750 Mm.22417 NM_023565 ENSMUSG00000002718 Cse1l 2610100P18Rik|AA407533|Capts|Cas|Xpo2 chromosome segregation 1-like (S. cerevisiae) 0.019231 0.528662 0.909663 chr10-581 chr10 121178087 121178243 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 35169 NM_173022 270802 Mm.209172 NM_173022 ENSMUSG00000053684 BC048403 E030027L10 cDNA sequence BC048403 0.006410 0.426752 -4.971229 chr4-647 chr4 46690053 46690171 + 25.4 NA intron (NM_001081141, intron 17 of 18) intron (NM_001081141, intron 17 of 18) -18813 NM_198664 381605 Mm.331595 NM_198664 ENSMUSG00000039813 Tbc1d2 A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1 TBC1 domain family, member 2 0.033898 0.571429 -1.383300 chr12-711 chr12 108627552 108627708 + 25.4 NA promoter-TSS (NM_009832) promoter-TSS (NM_009832) 86 NM_009832 12454 Mm.474441 NM_009832 ENSMUSG00000021258 Ccnk AW123198|AW413594|CPR4|CycK cyclin K 0.089744 0.611465 -4.287800 chr14-285 chr14 97351833 97351989 + 25.4 NA Intergenic Intergenic -299234 NM_007826 13134 Mm.320593 NM_001038610 ENSMUSG00000055639 Dach1 AI182278|Dac|Dach|E130112M23Rik dachshund 1 (Drosophila) 0.006410 0.388535 -8.802444 chr2-861 chr2 151308108 151308264 + 25.4 NA intron (NM_198214, intron 2 of 5) intron (NM_198214, intron 2 of 5) 15788 NM_198214 241727 Mm.39312 NM_198214 ENSMUSG00000027457 Snph 6430515A01|AW045671|AW556958|AW743098|mKIAA0374 syntaphilin 0.000000 0.496815 -0.532716 chr4-695 chr4 83161524 83161680 + 25.4 NA intron (NM_001081012, intron 18 of 25) intron (NM_001081012, intron 18 of 25) 164827 NM_001081012 320226 Mm.180032 NM_001081012 ENSMUSG00000052407 4930473A06Rik 4930418J05Rik|A330015D16Rik RIKEN cDNA 4930473A06 gene 0.012821 0.439490 -3.768942 chr10-509 chr10 77763447 77763603 + 25.4 NA Intergenic Intergenic -8696 NM_053014 28169 Mm.141230 NM_053014 ENSMUSG00000001211 Agpat3 AW061257|AW493985|D10Jhu12e|lpaat3 1-acylglycerol-3-phosphate O-acyltransferase 3 0.000000 0.528662 -1.494515 chr11-836 chr11 97159915 97160071 + 25.4 NA intron (NM_001081220, intron 6 of 10) intron (NM_001081220, intron 6 of 10) 8170 NM_001081220 217143 Mm.32622 NM_001081220 ENSMUSG00000070337 Gpr179 5330439C02Rik|Gpr158l1 G protein-coupled receptor 179 0.044872 0.573248 -4.971630 chr9-660 chr9 65858114 65858270 + 25.4 NA promoter-TSS (NM_011149) promoter-TSS (NM_011149) 18 NM_011149 19035 Mm.335249 NM_011149 ENSMUSG00000032383 Ppib AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b peptidylprolyl isomerase B 0.160256 0.764331 1.324461 chr16-317 chr16 24561087 24561243 + 25.4 NA intron (NM_001145952, intron 4 of 11) intron (NM_001145952, intron 4 of 11) -76038 NM_001145954 210126 Mm.450045 NM_001145952 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma 0.000000 0.343949 3.064796 chr6-540 chr6 72274697 72274853 + 25.4 NA promoter-TSS (NM_138592) promoter-TSS (NM_138592) -91 NM_138592 28035 Mm.281900 NM_138592 ENSMUSG00000056305 Usp39 AA408960|AI894154|CGI-21|D6Wsu157e|SAD1 ubiquitin specific peptidase 39 0.070513 0.509554 2.234561 chr1-960 chr1 81770469 81770625 + 25.4 NA Intergenic MLT1B|LTR|MaLR 399916 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.000000 0.458599 -1.996658 chr12-643 chr12 81563030 81563186 + 25.4 NA promoter-TSS (NM_026244) promoter-TSS (NM_026244) 46 NM_026244 328133 Mm.238279 XM_001472453 ENSMUSG00000048833 Slc39a9 2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151 solute carrier family 39 (zinc transporter), member 9 0.025641 0.585987 -6.849785 chr2-873 chr2 156674481 156674637 + 25.4 NA intron (NM_180956, intron 1 of 16) intron (NM_180956, intron 1 of 16) 8993 NM_013865 29812 Mm.279256 NM_013865 ENSMUSG00000027634 Ndrg3 4833415O14Rik|AI747193|Ndr3 N-myc downstream regulated gene 3 0.000000 0.439490 -3.266268 chr16-312 chr16 22433206 22433362 + 25.4 NA intron (NM_138650, intron 21 of 24) intron (NM_138650, intron 21 of 24) -78458 NM_023794 104156 Mm.155708 NM_023794 ENSMUSG00000013089 Etv5 1110005E01Rik|8430401F14Rik|ERM ets variant gene 5 0.038462 0.579618 -3.540226 chr5-912 chr5 113452537 113452693 + 25.4 NA Intergenic Intergenic -14596 NM_001033428 333048 Mm.332586 NM_001033428 ENSMUSG00000066964 Tmem211 Gm854 transmembrane protein 211 0.012821 0.535032 -4.402393 chr13-443 chr13 70079191 70079347 + 25.4 NA promoter-TSS (NM_145354) promoter-TSS (NM_145354) -119 NM_145354 28114 Mm.260009 NM_145354 ENSMUSG00000021595 Nsun2 D13Wsu123e|Misu NOL1/NOP2/Sun domain family member 2 0.051282 0.484076 1.391267 chr16-346 chr16 38054757 38054913 + 25.4 NA intron (NM_019827, intron 1 of 10) intron (NM_019827, intron 1 of 10) -46336 NR_033221 414072 Mm.393537 NR_033221 BC031361 - cDNA sequence BC031361 0.032051 0.496815 -0.537215 chr18-291 chr18 13058416 13058572 + 25.4 NA intron (NM_207530, intron 4 of 27) intron (NM_207530, intron 4 of 27) 26395 NM_207530 64291 Mm.443224 NM_207530 ENSMUSG00000044252 Osbpl1a G430090F17Rik|Gm753|Osbpl1b oxysterol binding protein-like 1A 0.012821 0.388535 -5.023257 chr1-816 chr1 14170647 14170803 + 25.4 NA intron (NM_010164, intron 12 of 17) intron (NM_010164, intron 12 of 17) 124688 NM_010164 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor eyes absent 1 homolog (Drosophila) 0.012821 0.579618 3.193982 chr4-651 chr4 47085823 47085979 + 25.4 NA Intergenic Intergenic -7495 NM_001024136 75691 Mm.86866 NM_001024136 ENSMUSG00000066191 Anks6 2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6 ankyrin repeat and sterile alpha motif domain containing 6 0.012821 0.458599 -2.467345 chr5-882 chr5 102731969 102732125 + 25.4 NA intron (NM_146161, intron 1 of 8) intron (NM_146161, intron 1 of 8) 10355 NM_029270 231532 Mm.477263 NM_029270 ENSMUSG00000057315 Arhgap24 0610025G21Rik|MGC38749 Rho GTPase activating protein 24 0.019231 0.509554 -3.784621 chr13-411 chr13 51373103 51373259 + 25.4 NA Intergenic Intergenic -47932 NM_010101 13610 Mm.480696 NM_010101 ENSMUSG00000067586 S1pr3 AI132464|Edg3|Lpb3|S1p3 sphingosine-1-phosphate receptor 3 0.000000 0.452229 -4.102793 chr7-609 chr7 143424139 143424295 + 25.4 NA intron (NM_175649, intron 5 of 7) intron (NM_175649, intron 5 of 7) 13018 NM_175649 244237 Mm.247498 NM_175649 ENSMUSG00000045362 Tnfrsf26 Tnfrh3|Tnfrsf24 tumor necrosis factor receptor superfamily, member 26 0.006410 0.407643 0.907055 chr15-317 chr15 12654913 12655069 + 25.4 NA Intergenic Intergenic 114391 NM_029998 77877 Mm.207311 NM_001166360 ENSMUSG00000022195 6030458C11Rik MGC118638 RIKEN cDNA 6030458C11 gene 0.000000 0.547771 -2.316706 chr2-805 chr2 101800190 101800346 + 25.4 NA intron (NM_178886, intron 4 of 5) intron (NM_178886, intron 4 of 5) 113168 NM_029635 76501 Mm.330424 NM_029635 ENSMUSG00000027163 Commd9 1810029F08Rik|AA409293 COMM domain containing 9 0.019231 0.541401 -6.275895 chr1-958 chr1 81205825 81205981 + 25.4 NA Intergenic Intergenic 249563 NM_172849 241134 Mm.313904 NM_172849 ENSMUSG00000054976 9430031J16Rik Jr6|Kiaa1486|MGC90544 RIKEN cDNA 9430031J16 gene 0.006410 0.331210 -7.336119 chr9-698 chr9 85670563 85670719 + 25.4 NA Intergenic Intergenic 31072 NM_001164792 21983 Mm.432513 NM_001164792 ENSMUSG00000035274 Tpbg 5T4|AW495680 trophoblast glycoprotein 0.000000 0.363057 -4.009169 chr6-515 chr6 53468751 53468907 + 25.4 NA Intergenic Intergenic -34122 NM_172728 231991 Mm.321138 NM_172728 ENSMUSG00000053007 Creb5 Crebpa|D430026C09Rik cAMP responsive element binding protein 5 0.012821 0.464968 3.646926 chr18-322 chr18 39056421 39056577 + 25.4 NA intron (NM_001033789, intron 3 of 4) intron (NM_001033789, intron 3 of 4) -11826 NM_010197 14164 Mm.241282 NM_010197 ENSMUSG00000036585 Fgf1 Dffrx|Fam|Fgf-1|Fgfa fibroblast growth factor 1 0.000000 0.522293 -3.304648 chr3-584 chr3 107334183 107334339 + 25.4 NA Intergenic Intergenic 15527 NM_001111143 229697 Mm.476749 XM_131138 ENSMUSG00000046213 Cym Gm131 chymosin 0.006410 0.452229 0.776825 chr3-625 chr3 135518006 135518162 + 25.4 NA Intergenic Intergenic 95087 NM_027288 110173 Mm.280536 NM_027288 ENSMUSG00000028164 Manba 2410030O07Rik|B930014J03Rik|Bmn mannosidase, beta A, lysosomal 0.032051 0.560510 -4.397045 chr10-558 chr10 94838301 94838457 + 25.4 NA Intergenic Intergenic 6592 NM_001168657 216233 Mm.477665 NM_001168655 ENSMUSG00000020027 Socs2 8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|MGC118106|SOCS-2|SSI-2|hg suppressor of cytokine signaling 2 0.019231 0.522293 1.095595 chr4-842 chr4 147500525 147500681 + 25.4 NA intron (NM_001085505, intron 3 of 10) intron (NM_001085505, intron 3 of 10) 13487 NM_001085505 230909 Mm.332067 XM_149554 ENSMUSG00000070577 Gm572 - predicted gene 572 0.032051 0.541401 -3.840455 chr18-279 chr18 5390360 5390516 + 25.4 NA Intergenic Intergenic -56001 NM_178722 240186 Mm.118257 NM_178722 ENSMUSG00000050945 Zfp438 9430031G09|9430091M14Rik|B830013J05Rik zinc finger protein 438 0.006410 0.414013 1.596371 chr15-393 chr15 77906594 77906750 + 25.4 NA intron (NM_007583, intron 1 of 3) intron (NM_007583, intron 1 of 3) 39863 NM_007583 12300 Mm.400802 NM_007583 ENSMUSG00000019146 Cacng2 AW060990|B230105C07Rik|B930041E13Rik|MGC123981|stargazer|stargazin|stg|wag|waggler calcium channel, voltage-dependent, gamma subunit 2 0.025641 0.598726 0.640783 chr9-747 chr9 117598565 117598721 + 25.4 NA Intergenic Intergenic -120032 NM_001172121 207181 Mm.326411 NM_001172121 ENSMUSG00000039607 Rbms3 6720477E09Rik|MGC118437 RNA binding motif, single stranded interacting protein 0.038462 0.394904 -0.678825 chr17-440 chr17 27059741 27059897 + 25.4 NA Intergenic Intergenic -127792 NM_146075 224640 Mm.29689 NM_146075 ENSMUSG00000044857 Lemd2 BC026588|Lem2|MGC37253|NET25 LEM domain containing 2 0.012821 0.490446 -4.657206 chr7-530 chr7 112614980 112615136 + 25.4 NA intron (NM_001166584, intron 2 of 13) intron (NM_001166584, intron 2 of 13) 64494 NM_001166585 21676 Mm.398985 NM_001166584 ENSMUSG00000055320 Tead1 2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1 TEA domain family member 1 0.012821 0.573248 -2.048731 chr13-368 chr13 24190564 24190720 + 25.4 NA intron (NM_026825, intron 2 of 37) intron (NM_026825, intron 2 of 37) 97613 NM_026825 68732 Mm.211047 NM_026825 ENSMUSG00000021338 Lrrc16a 1110037D04Rik|AI425970|CARMIL|D130057M20|Lrrc16 leucine rich repeat containing 16A 0.012821 0.445860 -4.759699 chr8-621 chr8 131244321 131244477 + 25.4 NA promoter-TSS (NM_008737) promoter-TSS (NM_008737) -763 NM_008737 18186 Mm.271745 NM_008737 ENSMUSG00000025810 Nrp1 C530029I03|NP-1|NPN-1|Npn1|Nrp neuropilin 1 0.051282 0.598726 5.342546 chr5-990 chr5 137357196 137357352 + 25.4 NA promoter-TSS (NM_008871) promoter-TSS (NM_008871) -375 NM_008871 18787 Mm.250422 NM_008871 ENSMUSG00000037411 Serpine1 PAI-1|PAI1|Planh1 serine (or cysteine) peptidase inhibitor, clade E, member 1 0.012821 0.547771 -1.700911 chr5-924 chr5 116027982 116028138 + 25.4 NA Intergenic Intergenic -35502 NM_001080808 75665 Mm.233914 NM_001080808 ENSMUSG00000041609 Ccdc64 2210403N09Rik|BICDR-1|MGC143541 coiled-coil domain containing 64 0.012821 0.464968 -6.082319 chr4-705 chr4 86678405 86678561 + 25.4 NA intron (NM_001110240, intron 1 of 9) intron (NM_001110240, intron 1 of 9) 20711 NM_001110240 76376 Mm.127296 NM_001110240 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 0.032051 0.439490 0.546415 chr4-823 chr4 138007818 138007974 + 25.4 NA intron (NM_008868, intron 4 of 5) intron (NM_008868, intron 4 of 5) 10496 NM_008868 18781 Mm.5189 NM_008868 ENSMUSG00000028750 Pla2g2c - phospholipase A2, group IIC 0.012821 0.503185 -3.798459 chr19-263 chr19 57922357 57922513 + 25.4 NA intron (NM_181415, intron 26 of 28) intron (NM_181415, intron 26 of 28) 258152 NM_181415 226255 Mm.245340 NM_181415 ENSMUSG00000054843 Atrnl1 AI504415|AW555641|Alp|Atrnl|Atrnlp attractin like 1 0.000000 0.509554 1.344104 chr5-863 chr5 93866973 93867129 + 25.4 NA intron (NM_015756, intron 2 of 10) intron (NM_015756, intron 2 of 10) -3285 NR_035487 100316841 NR_035487 Mir1961 mmu-mir-1961 microRNA mir-1961 0.012821 0.375796 -5.015855 chr17-495 chr17 43488182 43488338 + 25.4 NA intron (NM_030598, intron 3 of 3) intron (NM_030598, intron 3 of 3) -53640 NM_032003 83965 Mm.451536 NM_001168620 ENSMUSG00000023960 Enpp5 AW061004|D17Abb1e|E-NPP 5|KIAA4152|mKIAA4152 ectonucleotide pyrophosphatase/phosphodiesterase 5 0.012821 0.420382 0.502096 chr6-659 chr6 137576472 137576628 + 25.4 NA intron (NM_007945, intron 1 of 21) intron (NM_007945, intron 1 of 21) 36766 NM_007945 13860 Mm.412332 NM_007945 ENSMUSG00000015766 Eps8 AW261790 epidermal growth factor receptor pathway substrate 8 0.000000 0.496815 -2.930144 chr17-503 chr17 45562148 45562304 + 25.4 NA Intergenic Intergenic -12358 NM_026768 68565 Mm.287443 NM_026768 ENSMUSG00000023967 Mrps18a 1110004O20Rik|C79712|MGC66832 mitochondrial ribosomal protein S18A 0.012821 0.458599 -1.527304 chr12-656 chr12 86653871 86654027 + 25.4 NA intron (NM_145447, intron 1 of 9) intron (NM_145447, intron 1 of 9) 18308 NM_145447 217721 Mm.301076 NM_145447 ENSMUSG00000034258 Mfsd7c CCT|Flvcr2|MGC19050 major facilitator superfamily domain containing 7C 0.000000 0.445860 -5.101888 chr17-549 chr17 80115504 80115660 + 25.4 NA promoter-TSS (NM_146083) promoter-TSS (NM_146083) 29 NM_146083 225027 Mm.292016 NM_146083 ENSMUSG00000024097 Srsf7 35kDa|9430065L19Rik|9G8|MGC38287|NX-96|Sfrs7 serine/arginine-rich splicing factor 7 0.102564 0.617834 -4.819941 chr4-864 chr4 150975541 150975697 + 25.4 NA intron (NM_207691, intron 3 of 9) intron (NM_207691, intron 3 of 9) -2894 NM_019585 56226 Mm.264215 NM_019585 ENSMUSG00000028943 Espn je espin 0.089744 0.707006 -3.565742 chr18-379 chr18 81995270 81995426 + 25.4 NA Intergenic B4A|SINE|B4 545857 NM_008082 14427 Mm.6219 NM_008082 ENSMUSG00000024553 Galr1 Galnr1 galanin receptor 1 0.006410 0.458599 -3.567813 chr11-721 chr11 54747747 54747903 + 25.4 NA intron (NM_001083929, intron 1 of 4) intron (NM_001083929, intron 1 of 4) 1477 NM_008161 14778 Mm.200916 NM_001083929 ENSMUSG00000018339 Gpx3 AA960521|EGPx|GPx|GSHPx-3|GSHPx-P glutathione peroxidase 3 0.006410 0.541401 -4.313396 chr17-395 chr17 6388337 6388493 + 25.4 NA intron (NM_001033178, intron 2 of 16) intron (NM_001033178, intron 2 of 16) 8003 NM_001033178 77106 Mm.463722 NM_001033178 ENSMUSG00000038141 Tmem181a 5930418K15Rik|C76977|Gpr178|MGC182481|Tmem181|mKIAA1423 transmembrane protein 181A 0.025641 0.598726 2.647881 chr15-392 chr15 77072721 77072877 + 25.4 NA intron (NM_175387, intron 1 of 12) intron (NM_175387, intron 1 of 12) 61509 NM_001110827 93686 Mm.202774 NM_001110827 ENSMUSG00000033565 Rbm9 2810460A15Rik|AA407676|AI118529|Fbm2|Fxh|Hrnbp2 RNA binding motif protein 9 0.012821 0.560510 -4.212749 chr10-438 chr10 11205345 11205501 + 25.4 NA Intergenic Intergenic 171789 NM_010146 13853 Mm.89946 NM_010146 ENSMUSG00000055493 Epm2a - epilepsy, progressive myoclonic epilepsy, type 2 gene alpha 0.006410 0.420382 -0.443933 chr11-828 chr11 93975667 93975823 + 25.4 NA Intergenic Intergenic -51798 NM_009427 22057 Mm.259673 NM_009427 ENSMUSG00000037573 Tob1 Tob|Trob transducer of ErbB-2.1 0.000000 0.560510 -1.087473 chr7-409 chr7 24215908 24215967 + 25.4 NA promoter-TSS (NM_146183) promoter-TSS (NM_146183) 91 NM_146183 232969 Mm.181332 NM_146183 ENSMUSG00000064264 Zfp428 2410005H09Rik|AV271806|AW047854|MGC38830|Znf428 zinc finger protein 428 0.084746 0.600000 -2.965999 chr6-590 chr6 93200296 93200452 + 25.4 NA Intergenic Intergenic 294289 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.025641 0.414013 -4.893341 chr19-211 chr19 16425318 16425474 + 25.4 NA intron (NM_008139, intron 5 of 6) intron (NM_008139, intron 5 of 6) -77289 NM_008137 14675 Mm.313181 NM_008137 ENSMUSG00000024697 Gna14 AU023208 guanine nucleotide binding protein, alpha 14 0.000000 0.528662 1.389711 chr9-651 chr9 62329719 62329875 + 25.4 NA intron (NM_175484, intron 1 of 11) intron (NM_175484, intron 1 of 11) 5253 NM_175484 235431 Mm.335229 NM_175484 ENSMUSG00000041729 Coro2b CLIPINC|E130012P22Rik coronin, actin binding protein, 2B 0.006410 0.573248 0.924346 chr14-290 chr14 100691276 100691432 + 25.4 NA intron (NM_201529, intron 2 of 30) intron (NM_201529, intron 2 of 30) 74820 NM_201529 380928 Mm.479274 XM_001472577 ENSMUSG00000033060 Lmo7 C78582|FBXO20|Gm914|mKIAA0858 LIM domain only 7 0.006410 0.420382 1.873882 chr11-889 chr11 109401043 109401199 + 25.4 NA intron (NM_145940, intron 5 of 12) intron (NM_145940, intron 5 of 12) 26358 NM_145940 52639 Mm.35817 NM_145940 ENSMUSG00000041895 Wipi1 4930533H01Rik|AW411817|D11Ertd498e|MGC36416 WD repeat domain, phosphoinositide interacting 1 0.012821 0.554140 -3.206028 chr5-824 chr5 65740370 65740526 + 25.4 NA intron (NM_133697, intron 2 of 4) intron (NM_133697, intron 2 of 4) -25471 NM_009466 22235 Mm.344831 NM_009466 ENSMUSG00000029201 Ugdh Udpgdh UDP-glucose dehydrogenase 0.025641 0.490446 0.776825 chr1-1163 chr1 196695902 196696058 + 25.4 NA Intergenic Intergenic -18297 NR_033564 320400 Mm.417608 NR_033564 C030002c11rik - hypothetical LOC320400 0.006410 0.464968 -3.310489 chr11-733 chr11 59995693 59995849 + 25.4 NA intron (NM_009021, intron 2 of 5) intron (NM_009021, intron 2 of 5) 39495 NM_001037764 19377 Mm.296366 NM_001037764 ENSMUSG00000062115 Rai1 Gt1 retinoic acid induced 1 0.000000 0.343949 -1.259827 chr4-743 chr4 105377495 105377651 + 25.4 NA Intergenic Intergenic -436571 NM_183225 329908 Mm.234544 XM_001473472 ENSMUSG00000028514 Usp24 2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851 ubiquitin specific peptidase 24 0.025641 0.503185 2.380868 chr8-531 chr8 73768401 73768557 + 25.4 NA 5' UTR (NM_027560, exon 1 of 8) 5' UTR (NM_027560, exon 1 of 8) 230 NM_027560 70807 Mm.24215 NM_027560 ENSMUSG00000002910 Arrdc2 4632416I05Rik|Ilad1 arrestin domain containing 2 0.108974 0.585987 -4.764584 chr4-761 chr4 109662810 109662966 + 25.4 NA Intergenic Intergenic 121878 NM_010488 15572 Mm.3970 NM_001038698 ENSMUSG00000028546 Elavl4 Elav|Hud|PNEM ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 0.006410 0.458599 -0.444229 chr3-571 chr3 101447919 101448075 + 25.4 NA Intergenic Intergenic -30997 NM_013486 12481 Mm.22842 NM_013486 ENSMUSG00000027863 Cd2 LFA-2|Ly-37|Ly37 CD2 antigen 0.006410 0.528662 -8.315784 chr1-1089 chr1 166318337 166318493 + 25.4 NA Intergenic Intergenic -23385 NM_009721 11931 Mm.4550 NM_009721 ENSMUSG00000026576 Atp1b1 Atpb|Atpb-1 ATPase, Na+/K+ transporting, beta 1 polypeptide 0.019231 0.464968 -2.734331 chr5-752 chr5 20642266 20642422 + 25.4 NA Intergenic MLT1A0|LTR|MaLR -55746 NM_175437 212167 Mm.121705 NM_175437 ENSMUSG00000039934 Pion A530088I07Rik pigeon homolog (Drosophila) 0.000000 0.433121 4.714581 chr2-726 chr2 49390371 49390527 + 25.4 NA Intergenic L1M3|LINE|L1 -50873 NM_008449 16574 Mm.256342 NM_008449 ENSMUSG00000026764 Kif5c KINN|Khc|NKHC|NKHC2 kinesin family member 5C 0.019231 0.382166 1.909994 chr11-743 chr11 63613711 63613867 + 25.4 NA Intergenic MTC|LTR|MaLR 124690 NM_018805 54710 Mm.274426 NM_018805 ENSMUSG00000070407 Hs3st3b1 3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 0.006410 0.426752 -3.151978 chr12-681 chr12 96351957 96352113 + 25.4 NA Intergenic Lx9|LINE|L1 91018 NM_027076 69423 Mm.46121 NM_027076 ENSMUSG00000059695 1700019M22Rik - RIKEN cDNA 1700019M22 gene 0.006410 0.464968 -9.944058 chr11-844 chr11 98290344 98290500 + 25.4 NA intron (NM_011771, intron 7 of 7) intron (NM_011771, intron 7 of 7) 27499 NM_010346 14786 Mm.276702 NM_010346 ENSMUSG00000019312 Grb7 KIAA4028|MGC78181|mKIAA4028 growth factor receptor bound protein 7 0.019231 0.503185 -3.979171 chr2-879 chr2 163185624 163185780 + 25.4 NA intron (NR_027970, intron 3 of 3) intron (NR_027970, intron 3 of 3) 1944 NM_001099331 100043899 Mm.442535 XM_001476719 ENSMUSG00000078949 R3hdml OTTMUSG00000001070 R3H domain containing-like 0.012821 0.445860 -4.091316 chr4-627 chr4 35095930 35096086 + 25.4 NA exon (NM_009889, exon 4 of 4) exon (NM_009889, exon 4 of 4) 13343 NM_009889 12640 Mm.1361 NM_009889 ENSMUSG00000028298 Cga CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|MGC107283|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU glycoprotein hormones, alpha subunit 0.038462 0.535032 -4.655275 chr6-525 chr6 56789971 56790127 + 25.4 NA intron (NM_012056, intron 5 of 9) intron (NM_012056, intron 5 of 9) 28413 NM_012056 27055 Mm.20943 NM_012056 ENSMUSG00000029781 Fkbp9 1810014L23|AW549641|FKBP60|FKBP63 FK506 binding protein 9 0.012821 0.522293 -2.305602 chr12-590 chr12 58200844 58201000 + 25.4 NA intron (NM_001164370, intron 1 of 9) intron (NM_001164370, intron 1 of 9) 52486 NM_001164370 73490 Mm.268180 XM_354672 Mipol1 1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e mirror-image polydactyly gene 1 homolog (human) 0.006410 0.439490 2.219957 chr13-463 chr13 98151929 98152085 + 25.4 NA Intergenic Intergenic -15978 NM_001146045 320557 Mm.458280 XM_913243 Fam169a B230112C05Rik family with sequence similarity 169, member A 0.032051 0.566879 0.721738 chr2-934 chr2 181450316 181450472 + 25.4 NA intron (NM_016775, intron 1 of 4) intron (NM_016775, intron 1 of 4) 483 NM_016775 13002 Mm.391807 NM_016775 ENSMUSG00000000826 Dnajc5 2610314I24Rik|AU018536|Csp DnaJ (Hsp40) homolog, subfamily C, member 5 0.108974 0.605096 -1.911609 chr5-776 chr5 34486462 34486618 + 25.4 NA promoter-TSS (NM_181857) promoter-TSS (NM_181857) -235 NM_181857 272158 Mm.476948 NM_181857 ENSMUSG00000045102 Poln POL4P DNA polymerase N 0.064103 0.649682 -7.441966 chr6-588 chr6 93191684 93191840 + 25.4 NA Intergenic Intergenic 285677 NR_015530 330385 Mm.210197 NR_015530 9530026P05Rik B430306B02 RIKEN cDNA 9530026P05 gene 0.025641 0.420382 -1.698573 chr7-435 chr7 45235268 45235424 + 25.4 NA promoter-TSS (NR_027802) promoter-TSS (NR_027802) 72 NR_027802 50994 Mm.389897 NR_027802 Mtag2 MAG metastasis associated gene 2 0.102564 0.573248 -6.615578 chr6-507 chr6 50610475 50610631 + 25.4 NA Intergenic Intergenic -26574 NM_021892 60531 Mm.157158 NM_021892 ENSMUSG00000029831 Npvf Rfrp neuropeptide VF precursor 0.019231 0.433121 -4.305808 chr7-503 chr7 102315511 102315667 + 25.4 NA promoter-TSS (NM_009103) promoter-TSS (NM_009103) 74 NM_009103 20133 Mm.197486 NM_009103 ENSMUSG00000030978 Rrm1 RnrM1 ribonucleotide reductase M1 0.102564 0.579618 -3.725214 chr17-480 chr17 35487549 35487705 + 25.4 NA promoter-TSS (NM_026987) promoter-TSS (NM_026987) -203 NM_026987 69192 Mm.390986 NM_026987 ENSMUSG00000024422 Dhx16 2410006N22Rik|DBP2|Ddx16|mKIAA0577 DEAH (Asp-Glu-Ala-His) box polypeptide 16 0.044872 0.452229 -3.006443 chr1-1069 chr1 156837185 156837341 + 25.4 NA Intergenic Intergenic 24591 NM_010500 15939 Mm.12246 NM_010500 ENSMUSG00000056708 Ier5 - immediate early response 5 0.019231 0.528662 -3.623418 chr2-715 chr2 33377037 33377193 + 25.4 NA Intergenic Intergenic 85405 NM_010725 16917 Mm.39825 NM_010725 ENSMUSG00000038765 Lmx1b LMX1.1|LMX1.2|MGC159172 LIM homeobox transcription factor 1 beta 0.025641 0.490446 -4.001475 chr3-550 chr3 89329622 89329778 + 25.4 NA exon (NM_183037, exon 3 of 10) exon (NM_183037, exon 3 of 10) 1426 NM_001039466 360213 Mm.393984 NM_001039466 ENSMUSG00000042766 Trim46 AI385631|MGC90834 tripartite motif-containing 46 0.032051 0.630573 1.172648 chr8-534 chr8 74225728 74225884 + 25.4 NA intron (NM_001142322, intron 2 of 39) intron (NM_001142322, intron 2 of 39) 24104 NM_001142323 17925 Mm.33779 NM_001142322 ENSMUSG00000004677 Myo9b - myosin IXb 0.000000 0.535032 -6.902215 chr17-481 chr17 35879060 35879216 + 25.4 NA intron (NM_024468, intron 1 of 6) intron (NM_024468, intron 1 of 6) 348 NM_178281 79263 Mm.40624 NM_024468 ENSMUSG00000045409 Trim39 1100001D15Rik|E130103K13Rik|KIAA4179|RBCC-B30.2|Rnf23|mKIAA4179|tfp tripartite motif-containing 39 0.083333 0.643312 -10.703027 chr11-798 chr11 83283118 83283274 + 25.4 NA Intergenic Intergenic -4040 NM_080453 118453 Mm.264648 NM_080453 ENSMUSG00000020682 Mmp28 D130023P12 matrix metallopeptidase 28 (epilysin) 0.000000 0.471338 3.042666 chr17-421 chr17 23326814 23326970 + 25.4 NA 5' UTR (NM_011747, exon 1 of 6) 5' UTR (NM_011747, exon 1 of 6) 217 NM_011747 22654 Mm.40326 NM_011747 ENSMUSG00000062012 Zfp13 4933429B21|AI835008|Krox-8|Rhit|Zfp-13 zinc finger protein 13 0.038462 0.554140 1.389710 chr19-218 chr19 21845429 21845585 + 25.4 NA promoter-TSS (NM_031997) promoter-TSS (NM_031997) 69 NM_031997 83921 Mm.329776 NM_001033759 ENSMUSG00000024754 Tmem2 3110012M15Rik|MGC102198|mKIAA1412 transmembrane protein 2 0.141026 0.732484 1.191027 chr17-406 chr17 11257668 11257824 + 25.4 NA intron (NM_016694, intron 4 of 11) intron (NM_016694, intron 4 of 11) 574005 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 MGC130518|PRKN Parkinson disease (autosomal recessive, juvenile) 2, parkin 0.012821 0.458599 2.690858 chr2-846 chr2 135349892 135350048 + 25.4 NA Intergenic Intergenic -75309 NR_015544 320684 Mm.461532 NR_015544 9630028H03Rik - RIKEN cDNA 9630028H03 gene 0.025641 0.560510 -0.164597 chr12-569 chr12 43815108 43815264 + 25.4 NA Intergenic B4A|SINE|B4 1265168 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ (Hsp40) homolog, subfamily B, member 9 0.006410 0.445860 1.906534 chr10-563 chr10 97643549 97643705 + 25.4 NA Intergenic Intergenic -246849 NR_033537 100038699 Mm.467933 NR_033537 Gm10754 ENSMUSG00000074776 predicted gene 10754 0.000000 0.401274 2.120927 chr11-881 chr11 108429966 108430122 + 25.4 NA intron (NM_029606, intron 21 of 27) intron (NM_029606, intron 21 of 27) -68654 NM_145688 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Ccdc46 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351 coiled-coil domain containing 46 0.006410 0.433121 2.120927 chr6-661 chr6 140262992 140263148 + 25.4 NA Intergenic Intergenic -123434 NM_144920 109135 Mm.247670 NM_144920 ENSMUSG00000030231 Plekha5 2810431N21Rik|AI428202|AK129423|Ayu21-9|Gt(pU21)9Imeg|MGC38455|Pepp2 pleckstrin homology domain containing, family A member 5 0.025641 0.605096 3.752772 chr12-553 chr12 36297690 36297846 + 25.4 NA Intergenic L2|LINE|L2 -138118 NM_207531 403205 Mm.190508 NM_207531 ENSMUSG00000036231 Agr3 BCMP11|E030025L21Rik|Gm888 anterior gradient homolog 3 (Xenopus laevis) 0.025641 0.433121 -1.785128 chr5-866 chr5 96698185 96698341 + 25.4 NA intron (NM_175473, intron 2 of 73) intron (NM_175473, intron 2 of 73) 84007 NM_175473 231470 Mm.291120 NM_175473 ENSMUSG00000034687 Fras1 E130113P14Rik|bl|mKIAA1500 Fraser syndrome 1 homolog (human) 0.000000 0.477707 0.978053 chr7-496 chr7 98976497 98976653 + 25.4 NA intron (NM_178635, intron 3 of 14) intron (NM_178635, intron 3 of 14) 39761 NM_178635 78610 Mm.323072 NM_178635 ENSMUSG00000035354 Uvrag 9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl UV radiation resistance associated gene 0.012821 0.426752 0.561021 chr2-921 chr2 178963837 178963993 + 25.4 NA Intergenic Intergenic -407970 NM_009867 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-cadherin|Rcad cadherin 4 0.006410 0.490446 -3.845236 chr14-253 chr14 49985761 49985917 + 25.4 NA Intergenic tRNA-Leu-CTY|tRNA|tRNA -6668 NM_001011875 497106 Mm.379740 NM_001011875 ENSMUSG00000068407 Rnase12 - ribonuclease, RNase A family, 12 (non-active) 0.057692 0.522293 -3.845070 chr15-329 chr15 31003009 31003165 + 25.4 NA Intergenic Intergenic -165886 NM_146057 223453 Mm.222867 NM_146057 ENSMUSG00000039168 Dap 4921531N22Rik|AI789753|AU040360|MGC19154|MGC6998 death-associated protein 0.032051 0.515924 -2.062129 chr2-889 chr2 165358489 165358645 + 25.4 NA intron (NM_010165, intron 2 of 15) intron (NM_010165, intron 2 of 15) 12065 NM_010165 14049 Mm.282719 NM_010165 ENSMUSG00000017897 Eya2 AI327163 eyes absent 2 homolog (Drosophila) 0.006410 0.509554 -3.718365 chr4-663 chr4 58050941 58051097 + 25.4 NA promoter-TSS (NM_011660) promoter-TSS (NM_011660) -554 NM_011660 22166 Mm.260618 NM_011660 ENSMUSG00000028367 Txn1 ADF|AW550880|Trx1|Txn thioredoxin 1 0.032051 0.522293 -2.150411 chr16-337 chr16 33175535 33175691 + 25.4 NA intron (NM_080557, intron 1 of 13) intron (NM_080557, intron 1 of 13) 4411 NM_080557 69150 Mm.396285 NM_080557 ENSMUSG00000022808 Snx4 1810036H14Rik|AI037066 sorting nexin 4 0.019231 0.445860 -3.904205 chr10-595 chr10 127725300 127725456 + 25.4 NA promoter-TSS (NM_019953) promoter-TSS (NM_019953) -29 NM_019953 56530 Mm.44220 NM_019953 ENSMUSG00000025381 Cnpy2 5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9 canopy 2 homolog (zebrafish) 0.070513 0.598726 -2.290903 chr2-677 chr2 25077406 25077562 + 25.4 NA promoter-TSS (NM_001082476) promoter-TSS (NM_001082476) 37 NM_177344 227615 Mm.213925 NM_177344 ENSMUSG00000078201 Tmem203 C730025P13Rik|Hbebp1|RP23-132N23.14 transmembrane protein 203 0.083333 0.681529 1.830282 chr18-333 chr18 47494188 47494344 + 25.4 NA promoter-TSS (NM_018744) promoter-TSS (NM_018744) -67 NM_018744 20358 Mm.40909 NM_018744 ENSMUSG00000019647 Sema6a 9330158E07|A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 0.083333 0.694268 -3.318273 chr4-834 chr4 141644270 141644426 + 25.4 NA Intergenic Intergenic -132871 NM_001109685 71529 Mm.477412 NM_001109684 ENSMUSG00000040606 9030409G11Rik 2310007B04Rik|AI256607|AI666764|AW061099|Kaz|Kazrin RIKEN cDNA 9030409G11 gene 0.032051 0.554140 -5.014020 chr4-619 chr4 13676185 13676341 + 25.4 NA intron (NM_001111026, intron 1 of 10) intron (NM_001111026, intron 1 of 10) -2180 NM_001111027 12395 Mm.470961 NM_001111026 ENSMUSG00000006586 Runx1t1 Cbfa2t1h|ETO|MTG8 runt-related transcription factor 1; translocated to, 1 (cyclin D-related) 0.006410 0.439490 1.826390 chr4-837 chr4 142243133 142243289 + 25.4 NA Intergenic Intergenic 236185 NM_001081355 110593 Mm.477398 NM_001081355 ENSMUSG00000057637 Prdm2 4833427P12Rik|E330024L24Rik|Gm1033|KMT8|Riz|Riz1|Znfpr1c1 PR domain containing 2, with ZNF domain 0.012821 0.426752 -5.537307 chr12-548 chr12 32603757 32603913 + 25.4 NA intron (NM_011158, intron 2 of 10) intron (NM_011158, intron 2 of 10) 42691 NM_011158 19088 Mm.480655 NM_011158 ENSMUSG00000002997 Prkar2b AI451071|AW061005|Pkarb2|RII(beta) protein kinase, cAMP dependent regulatory, type II beta 0.006410 0.445860 -0.842920 chr1-1157 chr1 195086995 195087151 + 25.4 NA Intergenic Intergenic -16067 NM_144817 215303 Mm.40329 NM_144817 ENSMUSG00000016179 Camk1g CLICK-III|CaMKIgamma|MGC30513 calcium/calmodulin-dependent protein kinase I gamma 0.019231 0.566879 -2.019452 chr8-610 chr8 128548941 128549097 + 25.4 NA Intergenic Intergenic -6888 NM_028908 74393 Mm.41709 NM_028908 ENSMUSG00000050930 4933403G14Rik AI835009|KIAA1383|mKIAA1383 RIKEN cDNA 4933403G14 gene 0.019231 0.547771 -1.321721 chr9-736 chr9 112567400 112567556 + 25.4 NA Intergenic ERVL-E|LTR|ERVL 466016 NR_033433 620760 Mm.259863 XM_001478934 2900079G21Rik C130083B14|Gm6179 RIKEN cDNA 2900079G21 gene 0.025641 0.496815 -1.351058 chr9-688 chr9 79947209 79947365 + 25.4 NA Intergenic Intergenic -3430 NM_001039546 17920 Mm.4040 NM_001039546 ENSMUSG00000033577 Myo6 BC029719|Tlc|sv myosin VI 0.006410 0.452229 -0.439702 chr19-197 chr19 5803573 5803729 + 25.4 NA promoter-TSS (NR_002847) promoter-TSS (NR_002847) -980 NR_002847 72289 Mm.298256 NR_002847 Malat1 2210401K01Rik|9430072K23Rik|AI647968 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 0.089744 0.643312 -2.523620 chr6-550 chr6 82903039 82903195 + 25.4 NA intron (NM_001113481, intron 1 of 11) intron (NM_001113481, intron 1 of 11) 2291 NM_011350 20355 Mm.270543 NM_001113481 ENSMUSG00000000627 Sema4f - sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain 0.012821 0.350318 1.179223 chr4-635 chr4 43469230 43469386 + 25.4 NA TTS (NM_011571) TTS (NM_011571) 5932 NM_011571 21754 Mm.479565 NM_011571 ENSMUSG00000028458 Tesk1 AI326901 testis specific protein kinase 1 0.012821 0.515924 5.070406 chr7-550 chr7 121549114 121549270 + 25.4 NA intron (NM_011326, intron 6 of 12) intron (NM_011326, intron 6 of 12) 23538 NM_011326 20278 Mm.35247 NM_011326 ENSMUSG00000000216 Scnn1g [g]ENaC sodium channel, nonvoltage-gated 1 gamma 0.000000 0.401274 -3.541013 chr10-577 chr10 117460729 117460885 + 25.4 NA Intergenic L2|LINE|L2 -83972 NM_001162904 17245 Mm.442618 NM_001162904 ENSMUSG00000020212 Mdm1 Arrd2|Mdm-1 transformed mouse 3T3 cell double minute 1 0.012821 0.477707 -1.793618 chr1-897 chr1 63979616 63979772 + 25.4 NA intron (NM_033563, intron 2 of 3) intron (NM_033563, intron 2 of 3) 75971 NM_033563 93691 Mm.458200 NM_033563 ENSMUSG00000025959 Klf7 9830124P08Rik Kruppel-like factor 7 (ubiquitous) 0.000000 0.503185 5.923124 chr6-573 chr6 90523746 90523902 + 25.4 NA intron (NM_027406, intron 2 of 22) intron (NM_027406, intron 2 of 22) 7473 NM_027406 107747 Mm.30035 NM_027406 ENSMUSG00000030088 Aldh1l1 1810048F20Rik|Fthfd|Neut2 aldehyde dehydrogenase 1 family, member L1 0.019231 0.439490 -6.235567 chr2-732 chr2 53013184 53013340 + 25.4 NA promoter-TSS (NM_022989) promoter-TSS (NM_022989) -66 NM_018785 56194 Mm.393219 NM_018785 ENSMUSG00000061136 Prpf40a 2810012K09Rik|FBP11|Fnbp11|Fnbp3 PRP40 pre-mRNA processing factor 40 homolog A (yeast) 0.089744 0.668790 -2.039449 chr4-875 chr4 152717451 152717607 + 25.4 NA Intergenic Intergenic -83507 NM_175287 97159 Mm.7066 NM_001163019 ENSMUSG00000047613 A430005L14Rik C79672 RIKEN cDNA A430005L14 gene 0.019231 0.439490 -2.225334 chr7-425 chr7 30763851 30764007 + 25.4 NA promoter-TSS (NM_052991) promoter-TSS (NM_052991) -316 NM_194321 56188 Mm.1491 NM_019503 ENSMUSG00000036570 Fxyd1 0610012C17Rik|1110006M24Rik|Plm|Pml FXYD domain-containing ion transport regulator 1 0.019231 0.515924 -1.543417 chr18-356 chr18 61928536 61928692 + 25.4 NA intron (NM_001164491, intron 23 of 23) intron (NM_001164491, intron 23 of 23) -16583 NM_178928 106877 Mm.26632 NM_178928 ENSMUSG00000033032 Afap1l1 AI173486 actin filament associated protein 1-like 1 0.025641 0.426752 -4.488343 chr1-927 chr1 74730834 74730990 + 25.4 NA intron (NM_009518, intron 2 of 3) intron (NM_009518, intron 2 of 3) 5687 NM_009518 22409 Mm.5130 NM_009518 ENSMUSG00000026167 Wnt10a - wingless related MMTV integration site 10a 0.012821 0.662420 -0.827809 chr8-584 chr8 124465129 124465130 + 25.4 NA promoter-TSS (NM_133765) promoter-TSS (NM_133765) -271 NM_133765 76454 Mm.24829 NM_133765 ENSMUSG00000031811 Fbxo31 2310046N15Rik|Fbx14|Fbxo14 F-box protein 31 1.000000 1.000000 -10000000000.000000 chr6-576 chr6 90670333 90670489 + 25.4 NA intron (NM_001134384, intron 1 of 13) intron (NM_001134384, intron 1 of 13) 11622 NM_001134383 232227 Mm.473438 XM_001479632 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 IQ motif and Sec7 domain 1 0.006410 0.617834 -1.338950 chr8-450 chr8 12947641 12947797 + 25.4 NA intron (NM_178076, intron 1 of 30) intron (NM_178076, intron 1 of 30) -1675 NM_001159486 17207 Mm.334413 NM_001159485 ENSMUSG00000031442 Mcf2l C130040G20Rik|Dbs|Ost|mKIAA0362 mcf.2 transforming sequence-like 0.000000 0.611465 -6.116590 chr19-260 chr19 56285330 56285486 + 25.4 NA Intergenic Intergenic -55779 NM_146101 226243 Mm.25791 NM_146101 ENSMUSG00000025075 Habp2 AI035669|FSAP|HABP|HGFAL|MGC28705|PHBP hyaluronic acid binding protein 2 0.012821 0.445860 -5.336136 chr18-289 chr18 11982599 11982755 + 25.4 NA promoter-TSS (NM_001146287) promoter-TSS (NM_001146287) -132 NM_022021 63955 Mm.40717 NM_001146287 ENSMUSG00000040957 Cables1 Cables|ik3-1 CDK5 and Abl enzyme substrate 1 0.044872 0.547771 -1.222636 chr8-558 chr8 98241388 98241544 + 25.4 NA promoter-TSS (NM_008609) promoter-TSS (NM_008609) 1 NM_008609 17388 Mm.217116 NM_008609 ENSMUSG00000031790 Mmp15 AI503551|MT2-MMP matrix metallopeptidase 15 0.115385 0.745223 -3.767262 chr11-904 chr11 115061438 115061594 + 25.4 NA 3' UTR (NM_001033393, exon 10 of 10) 3' UTR (NM_001033393, exon 10 of 10) 21817 NM_010350 14813 Mm.39090 NM_010350 ENSMUSG00000020734 Grin2c NMDAR2C|NR2C glutamate receptor, ionotropic, NMDA2C (epsilon 3) 0.019231 0.573248 -4.268958 chr7-512 chr7 110338742 110338898 + 25.4 NA intron (NM_177324, intron 2 of 40) intron (NM_177324, intron 2 of 40) 67277 NM_177324 319934 Mm.102970 XM_001477215 ENSMUSG00000038371 Sbf2 4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1 SET binding factor 2 0.006410 0.299363 -2.378097 chr8-589 chr8 125060197 125060353 + 25.4 NA Intergenic Intergenic -107955 NM_009569 22761 Mm.390068 NM_009569 ENSMUSG00000049577 Zfpm1 FOG|Fog1 zinc finger protein, multitype 1 0.012821 0.560510 -3.607271 chr14-266 chr14 64216420 64216576 + 25.4 NA promoter-TSS (NM_021458) promoter-TSS (NM_021458) 75 NM_021458 14365 Mm.214687 NM_021458 ENSMUSG00000007989 Fzd3 AU020229|D930050A07Rik|Fz3 frizzled homolog 3 (Drosophila) 0.185897 0.796178 -9.815613 chr10-494 chr10 74193023 74193179 + 25.4 NA Intergenic Intergenic -217845 NM_010311 14687 Mm.393508 NM_010311 ENSMUSG00000040009 Gnaz AI847979|Gz guanine nucleotide binding protein, alpha z subunit 0.006410 0.388535 -1.478054 chr1-911 chr1 70780333 70780489 + 25.4 NA intron (NM_177164, intron 3 of 3) intron (NM_177164, intron 3 of 3) 121489 NM_177164 320460 Mm.360649 NM_177164 ENSMUSG00000045648 Vwc2l A830006F12Rik|Brl von Willebrand factor C domain-containing protein 2-like 0.006410 0.458599 -8.638545 chr12-522 chr12 8980406 8980562 + 25.4 NA intron (NM_010770, intron 2 of 7) intron (NM_010770, intron 2 of 7) 6548 NM_010770 17182 Mm.42226 NM_010770 ENSMUSG00000020583 Matn3 AV009181 matrilin 3 0.025641 0.522293 -3.390049 chr7-595 chr7 141206263 141206419 + 25.4 NA exon (NM_133191, exon 5 of 21) exon (NM_133191, exon 5 of 21) 10089 NR_033532 320871 Mm.475463 NM_177280 B230206H07Rik - RIKEN cDNA B230206H07 gene 0.032051 0.566879 2.565422 chr16-334 chr16 31233919 31234075 + 25.4 NA intron (NM_007470, intron 2 of 5) intron (NM_007470, intron 2 of 5) 346 NM_007470 11815 Mm.2082 NM_007470 ENSMUSG00000022548 Apod - apolipoprotein D 0.000000 0.471338 -5.737350 chr19-204 chr19 9133321 9133477 + 25.4 NA intron (NM_001039959, intron 5 of 5) intron (NM_001039959, intron 5 of 5) 21602 NM_011681 22287 Mm.2258 NM_011681 ENSMUSG00000024653 Scgb1a1 CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg secretoglobin, family 1A, member 1 (uteroglobin) 0.012821 0.528662 4.998735 chr5-871 chr5 98075147 98075303 + 25.4 NA Intergenic Intergenic 196039 NM_133738 71914 Mm.24842 NM_133738 ENSMUSG00000029338 Antxr2 2310046B19Rik|AW561899|CMG-2|CMG2|cI-35 anthrax toxin receptor 2 0.000000 0.515924 -3.413389 chr8-479 chr8 31344937 31345093 + 25.4 NA Intergenic Intergenic -659443 NM_153135 210801 Mm.248433 NM_153135 ENSMUSG00000063626 Unc5d D930029E11Rik|KIAA1777|Unc5h4|mKIAA1777 unc-5 homolog D (C. elegans) 0.012821 0.363057 -1.600152 chr3-508 chr3 53651692 53651848 + 25.4 NA intron (NM_172862, intron 6 of 23) intron (NM_172862, intron 6 of 23) 75049 NM_153156 229277 Mm.222810 NM_153156 ENSMUSG00000027744 Stoml3 Epb7.2l|SLP3|sro stomatin (Epb7.2)-like 3 0.012821 0.496815 -0.353308 chr1-853 chr1 37554789 37554945 + 25.4 NA Intergenic Intergenic -74062 NM_173870 269181 Mm.447744 NM_173870 ENSMUSG00000026110 Mgat4a 9530018I07Rik|GnT-IVa mannoside acetylglucosaminyltransferase 4, isoenzyme A 0.019231 0.528662 -8.331367 chr3-655 chr3 154148101 154148257 + 25.4 NA intron (NM_001081263, intron 3 of 21) intron (NM_001081263, intron 3 of 21) 117674 NM_010713 16875 Mm.15530 NM_010713 ENSMUSG00000028201 Lhx8 L3|Lhx7 LIM homeobox protein 8 0.006410 0.477707 -4.241481 chr11-811 chr11 87505692 87505848 + 25.4 NA intron (NM_172448, intron 2 of 9) intron (NM_172448, intron 2 of 9) 26489 NM_172448 207742 Mm.440230 NM_172448 ENSMUSG00000034177 Rnf43 4732452J19Rik ring finger protein 43 0.025641 0.490446 -7.045671 chr6-628 chr6 114931088 114931244 + 25.4 NA Intergenic Intergenic -43795 NM_177683 232334 Mm.446323 NM_177683 ENSMUSG00000030315 Vgll4 BC048841|MGC54805|VGL-4 vestigial like 4 (Drosophila) 0.025641 0.490446 -8.989076 chr9-634 chr9 57494670 57494826 + 25.4 NA intron (NM_009992, intron 1 of 6) intron (NM_009992, intron 1 of 6) -1001 NM_001136059 13076 Mm.14089 NM_001136059 ENSMUSG00000032315 Cyp1a1 AHH|AHRR|CP11|Cyp1a2|P450-1 cytochrome P450, family 1, subfamily a, polypeptide 1 0.064103 0.700637 5.070406 chr17-508 chr17 46889167 46889323 + 25.4 NA intron (NM_029296, intron 3 of 3) intron (NM_029296, intron 3 of 3) -10584 NM_145489 224833 Mm.218444 NM_145489 ENSMUSG00000034382 AI661453 - expressed sequence AI661453 0.006410 0.452229 1.548040 chr3-513 chr3 56131061 56131217 + 25.4 NA intron (NM_030595, intron 10 of 57) intron (NM_030595, intron 10 of 57) 140491 NM_030595 26422 Mm.384353 NM_030595 Nbea Lyst2|mKIAA1544 neurobeachin 0.000000 0.407643 -0.265074 chr7-441 chr7 46883787 46883943 + 25.4 NA Intergenic Intergenic -7429 NM_175318 101685 Mm.155687 NM_175318 ENSMUSG00000049516 Spty2d1 5830435K17Rik|AI852426|P16H6 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) 0.025641 0.649682 -2.076558 chr1-839 chr1 34455575 34455731 + 25.4 NA Intergenic GA-rich|Low_complexity|Low_complexity 12678 NM_009355 21755 Mm.10725 NM_009355 ENSMUSG00000026125 Prss39 MGC144580|MGC144581|Tesp1 protease, serine, 39 0.000000 0.611465 -4.576381 chr4-641 chr4 45619650 45619806 + 25.4 NA Intergenic Intergenic -67800 NM_001033306 230126 Mm.251716 XM_001474892 ENSMUSG00000044813 Shb BC028832 src homology 2 domain-containing transforming protein B 0.000000 0.337580 -4.167645 chr5-937 chr5 120247110 120247266 + 25.4 NA Intergenic Intergenic -129941 NM_028762 74111 Mm.41022 NM_028762 ENSMUSG00000029594 Rbm19 1200009A02Rik|AV302714|KIAA0682|NPO RNA binding motif protein 19 0.019231 0.560510 -4.875305 chr17-442 chr17 27113803 27113814 + 25.4 NA Intergenic Intergenic 117085 NM_001013385 268934 Mm.358940 NM_001013385 ENSMUSG00000063239 Grm4 Gprc1d|mGluR4 glutamate receptor, metabotropic 4 0.000000 0.750000 -10000000000.000000 chr17-511 chr17 47305460 47305616 + 25.4 NA Intergenic Intergenic -7656 NM_001109973 17240 Mm.329100 NM_001109973 ENSMUSG00000032717 Mdfi I-mf|I-mfa MyoD family inhibitor 0.025641 0.592357 2.668662 chr6-489 chr6 38805907 38806063 + 25.4 NA promoter-TSS (NM_010433) promoter-TSS (NM_010433) -188 NM_010433 15258 Mm.391962 NM_001136065 ENSMUSG00000061436 Hipk2 1110014O20Rik|B230339E18Rik|Stank homeodomain interacting protein kinase 2 0.179487 0.802548 -3.741996 chr14-207 chr14 17030641 17030797 + 25.4 NA intron (NM_011584, intron 2 of 8) intron (NM_011584, intron 2 of 8) 1508 NM_011584 353187 Mm.26587 NM_011584 ENSMUSG00000021775 Nr1d2 RVR|Rev-erb nuclear receptor subfamily 1, group D, member 2 0.121795 0.687898 8.814743 chr16-370 chr16 84664924 84665080 + 25.4 NA intron (NM_023844, intron 1 of 9) intron (NM_023844, intron 1 of 9) 8288 NM_023844 67374 Mm.41758 NM_023844 ENSMUSG00000053062 Jam2 1110002N23Rik|2410030G21Rik|2410167M24Rik|AU016127|JAM-2|JAM-B|Jcam2|VE-JAM junction adhesion molecule 2 0.006410 0.382166 -1.423865 chr11-845 chr11 98446821 98446977 + 25.4 NA intron (NM_001007461, intron 3 of 10) intron (NM_001007461, intron 3 of 10) 4450 NM_001007461 450219 Mm.371065 NM_001007461 ENSMUSG00000064224 Gsdma3 Bsk|Dfl|Fgn|Gsdm1l|Gsdm3|Rco2|Rim3 gasdermin A3 0.000000 0.490446 -0.028997 chr11-646 chr11 3548778 3548812 + 25.4 NA promoter-TSS (NM_001159288) promoter-TSS (NM_001159288) 16 NR_002321 544752 Mm.471608 NR_002321 Tug1 AI316828 taurine upregulated gene 1 0.294118 0.914286 -13.178973 chr18-301 chr18 22656544 22656700 + 25.4 NA intron (NM_001167777, intron 11 of 12) intron (NM_001167777, intron 11 of 12) 168524 NM_001167777 211961 Mm.392310 XM_001474902 ENSMUSG00000045215 Asxl3 C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945 additional sex combs like 3 (Drosophila) 0.000000 0.420382 4.403422 chr18-293 chr18 13661370 13661526 + 25.4 NA Intergenic Intergenic 454454 NM_145492 225207 Mm.40325 NM_145492 ENSMUSG00000024420 Zfp521 B930086A16Rik|Evi3|Znf521 zinc finger protein 521 0.012821 0.407643 -1.774781 chr4-733 chr4 102009710 102009866 + 25.4 NA intron (NM_019840, intron 5 of 14) intron (NM_019840, intron 5 of 14) -58203 NM_001177980 18578 Mm.20181 NM_001177980 ENSMUSG00000028525 Pde4b Dpde4|R74983|dunce phosphodiesterase 4B, cAMP specific 0.032051 0.573248 -2.943774 chr10-540 chr10 89238258 89238414 + 25.4 NA exon (NM_029166, exon 16 of 21) exon (NM_029166, exon 16 of 21) 63547 NM_029166 75089 Mm.446134 NM_029166 ENSMUSG00000019951 Uhrf1bp1l 2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|KIAA0701|mKIAA0701 UHRF1 (ICBP90) binding protein 1-like 0.006410 0.420382 -3.701925 chr7-528 chr7 112594376 112594532 + 25.4 NA intron (NM_001166584, intron 2 of 13) intron (NM_001166584, intron 2 of 13) 43890 NM_001166585 21676 Mm.398985 NM_001166584 ENSMUSG00000055320 Tead1 2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1 TEA domain family member 1 0.006410 0.458599 -6.210592 chr6-603 chr6 98831657 98831813 + 25.4 NA Intergenic L1MB3|LINE|L1 296746 NM_053202 108655 Mm.461753 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 0.006410 0.401274 -1.267479 chrX-131 chrX 159886477 159886633 + 25.4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 44548 NM_027027 69299 Mm.79031 NM_027027 ENSMUSG00000031384 Asb9 1700011M07Rik ankyrin repeat and SOCS box-containing 9 0.000000 0.401274 -4.839193 chr14-216 chr14 20619617 20619773 + 25.4 NA promoter-TSS (NM_011695) promoter-TSS (NM_011695) -417 NM_011695 22334 Mm.262327 NM_011695 ENSMUSG00000021771 Vdac2 Vdac6 voltage-dependent anion channel 2 0.038462 0.624204 -3.913156 chr1-1087 chr1 162096611 162096767 + 25.4 NA intron (NM_001038621, intron 2 of 8) intron (NM_001038621, intron 2 of 8) -47235 NM_009786 12301 Mm.10702 NM_009786 ENSMUSG00000014226 Cacybp - calcyclin binding protein 0.006410 0.420382 -1.383300 chr13-399 chr13 44888829 44888985 + 25.4 NA intron (NM_021878, intron 5 of 18) intron (NM_021878, intron 5 of 18) 124161 NM_025772 94245 Mm.352311 NM_025772 ENSMUSG00000057531 Dtnbp1 5430437B18Rik|AW048963|dysbindin|sdy dystrobrevin binding protein 1 0.006410 0.433121 -1.563208 chr13-366 chr13 20323456 20323612 + 25.4 NA intron (NM_080288, intron 12 of 20) intron (NM_080288, intron 12 of 20) 130645 NM_080288 140580 Mm.342392 NM_080288 ENSMUSG00000041112 Elmo1 6330578D22Rik|AI173001|C230095H21Rik|CED-12|KIAA0281|mKIAA0281 engulfment and cell motility 1, ced-12 homolog (C. elegans) 0.006410 0.375796 -6.229150 chr4-801 chr4 130994606 130994762 + 25.4 NA Intergenic Intergenic 115670 NM_011214 19273 Mm.4860 NM_001083119 ENSMUSG00000028909 Ptpru Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda protein tyrosine phosphatase, receptor type, U 0.019231 0.560510 -3.723378 chr6-439 chr6 5490249 5490405 + 25.4 NA Intergenic ORR1E|LTR|MaLR -44049 NM_013743 27273 Mm.235547 NM_013743 ENSMUSG00000019577 Pdk4 AV005916 pyruvate dehydrogenase kinase, isoenzyme 4 0.000000 0.452229 -1.160810 chr7-437 chr7 45734241 45734397 + 25.4 NA exon (NM_008172, exon 1 of 12) exon (NM_008172, exon 1 of 12) 404 NM_008172 14814 Mm.322594 NM_008172 ENSMUSG00000002771 Grin2d NMDAR2D|NR2D glutamate receptor, ionotropic, NMDA2D (epsilon 4) 0.153846 0.745223 -0.404086 chr8-565 chr8 115354913 115355069 + 25.4 NA Intergenic L1MA4|LINE|L1 -101028 NM_130457 170571 Mm.403088 NM_130457 ENSMUSG00000031772 Cntnap4 Caspr4|E130114F09Rik contactin associated protein-like 4 0.000000 0.382166 -3.134725 chr2-704 chr2 30754208 30754364 + 25.4 NA Intergenic Intergenic -20723 NM_133673 30934 Mm.249164 NM_133673 ENSMUSG00000026848 Tor1b 2610016F05Rik|DQ1|torsinB torsin family 1, member B 0.000000 0.515924 -7.723811 chr11-835 chr11 96395045 96395201 + 25.4 NA intron (NM_001177899, intron 4 of 11) intron (NM_001177899, intron 4 of 11) 114443 NM_001177898 78473 Mm.446811 NM_001033186 ENSMUSG00000057058 Skap1 1700091G21Rik|Scap1|Skap-55 src family associated phosphoprotein 1 0.057692 0.509554 -2.447494 chr7-498 chr7 99048107 99048263 + 25.4 NA intron (NM_026384, intron 1 of 7) intron (NM_026384, intron 1 of 7) 9720 NM_026384 67800 Mm.180189 NM_026384 ENSMUSG00000030747 Dgat2 0610010B06Rik|DGAT-2 diacylglycerol O-acyltransferase 2 0.025641 0.547771 -3.439675 chr12-717 chr12 109240012 109240168 + 25.4 NA Intergenic CpG -1027 NM_009537 22632 Mm.458511 NM_009537 ENSMUSG00000021264 Yy1 AW488674|NF-E1 YY1 transcription factor 0.141026 0.662420 -10.452458 chr5-890 chr5 107688312 107688468 + 25.4 NA Intergenic RMER6D|LTR|ERVK 16540 NM_027599 70902 Mm.55870 NM_027599 ENSMUSG00000033794 Lpcat2b 4921521K07Rik|Aytl1b lysophosphatidylcholine acyltransferase 2B 0.012821 0.484076 -0.340156 chr9-606 chr9 47661492 47661648 + 25.4 NA Intergenic Intergenic -252489 NM_172921 244853 Mm.325522 NM_172921 ENSMUSG00000044229 Fam55d C130036J11|D930028F11Rik family with sequence similarity 55, member D 0.025641 0.566879 -3.805433 chr7-540 chr7 117069588 117069744 + 25.4 NA Intergenic Intergenic -102461 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.006410 0.535032 -2.857341 chr2-768 chr2 73363726 73363882 + 25.4 NA TTS (NM_007389) TTS (NM_007389) 17341 NM_007389 11435 Mm.4583 NM_007389 ENSMUSG00000027107 Chrna1 AI385656|AI608266|Achr-1|Acra cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) 0.038462 0.464968 0.822431 chr13-472 chr13 100229167 100229323 + 25.4 NA Intergenic Intergenic -55734 NM_001004149 238803 Mm.343207 NM_001004149 ENSMUSG00000050919 Zfp366 DC-SCRIPT|MGC99415|Znf366 zinc finger protein 366 0.006410 0.490446 -4.339830 chr3-546 chr3 88382912 88383068 + 25.4 NA promoter-TSS (NM_009836) promoter-TSS (NM_009836) -71 NM_009836 12462 Mm.256034 NM_009836 ENSMUSG00000001416 Cct3 AL024092|Cctg|Tcp1-rs3|TriC-P5 chaperonin containing Tcp1, subunit 3 (gamma) 0.025641 0.464968 -8.556391 chr4-855 chr4 149631056 149631212 + 25.4 NA Intergenic Intergenic -67756 NM_133753 74155 Mm.318841 NM_133753 ENSMUSG00000028967 Errfi1 1300002F13Rik|AI788755|Mig-6|Mig6|RALT ERBB receptor feedback inhibitor 1 0.012821 0.547771 -1.889987 chr14-200 chr14 7399482 7399638 + 25.4 NA intron (NM_028934, intron 4 of 15) intron (NM_028934, intron 4 of 15) 60516 NM_028934 74430 Mm.271901 NM_028934 ENSMUSG00000021747 4930452B06Rik 4933406L09Rik|AI854000 RIKEN cDNA 4930452B06 gene 0.012821 0.375796 7.473383 chr6-539 chr6 71423503 71423659 + 25.4 NA 5' UTR (NM_009543, exon 1 of 4) 5' UTR (NM_009543, exon 1 of 4) 179 NM_009543 22644 Mm.422969 NM_009543 ENSMUSG00000052656 Rnf103 AW146237|AW212918|Zfp103|kf-1 ring finger protein 103 0.141026 0.681529 -9.988377 chr12-661 chr12 86859894 86860050 + 25.4 NA intron (NM_001081423, intron 29 of 33) intron (NM_001081423, intron 29 of 33) 108172 NM_009368 21809 Mm.3992 NM_009368 ENSMUSG00000021253 Tgfb3 MGC118722|Tgfb-3 transforming growth factor, beta 3 0.000000 0.458599 -2.880926 chr2-797 chr2 92897485 92897641 + 25.4 NA Intergenic Intergenic -50580 NM_001177536 100042784 Mm.442142 XM_001478808 ENSMUSG00000075028 Prdm11 8030443D09Rik|AA163972|Gm707 PR domain containing 11 0.006410 0.439490 -2.624119 chr13-442 chr13 70002585 70002741 + 25.4 NA Intergenic Intergenic -1427 NM_001169131 210106 Mm.315959 NM_001169131 ENSMUSG00000034575 Papd7 LAK-1|MGC69673|POLK|Pols|TRF4|TRF4-1 PAP associated domain containing 7 0.038462 0.496815 -4.134992 chr2-764 chr2 71428259 71428415 + 25.4 NA Intergenic Intergenic -80744 NM_010054 13392 Mm.3896 NM_010054 ENSMUSG00000023391 Dlx2 AW121999|Dlx-2|Tes-1 distal-less homeobox 2 0.006410 0.560510 -1.354577 chr12-730 chr12 112206855 112207011 + 25.4 NA intron (NM_001025360, intron 1 of 15) intron (NM_001025360, intron 1 of 15) 277 NM_001081959 16593 Mm.278357 NM_001025360 ENSMUSG00000021288 Klc1 AI874768|Kns2 kinesin light chain 1 0.128205 0.764331 0.133607 chr1-1033 chr1 133117229 133117385 + 25.4 NA intron (NM_001081011, intron 22 of 22) intron (NM_001081011, intron 22 of 22) -10198 NM_019777 56489 Mm.386783 NM_019777 ENSMUSG00000042349 Ikbke AW558201|IKK-i|IKKepsilon|Ikki inhibitor of kappaB kinase epsilon 0.006410 0.407643 -5.886438 chr2-655 chr2 5809809 5809965 + 25.4 NA intron (NM_021305, intron 2 of 11) intron (NM_021305, intron 2 of 11) 2738 NM_021305 57743 Mm.21435 NM_021305 ENSMUSG00000025816 Sec61a2 - Sec61, alpha subunit 2 (S. cerevisiae) 0.012821 0.464968 -5.957979 chr1-1002 chr1 108106257 108106413 + 25.4 NA intron (NM_133821, intron 1 of 16) intron (NM_133821, intron 1 of 16) 106920 NM_133821 98432 Mm.24115 XM_001475839 ENSMUSG00000044340 Phlpp1 AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606 PH domain and leucine rich repeat protein phosphatase 1 0.019231 0.547771 4.993439 chr3-501 chr3 48985687 48985843 + 25.4 NA Intergenic Intergenic -280470 NR_003617 66332 Mm.46124 NR_003617 1700018B24Rik - enhancer of rudimentary homolog pseudogene 0.000000 0.375796 -0.334808 chr2-748 chr2 63561166 63561322 + 25.4 NA Intergenic Intergenic 337602 NM_021716 60344 Mm.438921 NM_021716 ENSMUSG00000075324 Fign fi|fidget fidgetin 0.000000 0.356688 -4.877850 chr5-784 chr5 36686357 36686513 + 25.4 NA intron (NM_030889, intron 1 of 26) intron (NM_030889, intron 1 of 26) 28799 NM_030889 81840 Mm.34113 NM_030889 ENSMUSG00000029093 Sorcs2 N28137|mKIAA1329 sortilin-related VPS10 domain containing receptor 2 0.006410 0.617834 0.333948 chr1-991 chr1 95655869 95656025 + 25.4 NA intron (NM_178882, intron 1 of 9) intron (NM_178882, intron 1 of 9) 302 NM_178882 98314 Mm.383401 NM_178882 ENSMUSG00000073609 D2hgdh AA408776|AA408778|AI325464 D-2-hydroxyglutarate dehydrogenase 0.064103 0.554140 -2.067476 chr13-490 chr13 111025129 111025285 + 25.4 NA TTS (NR_035442) TTS (NR_035442) 521 NR_035442 100316683 NR_035442 Mir1904 mmu-mir-1904 microRNA mir-1904 0.012821 0.484076 -7.525859 chr9-680 chr9 72595902 72596058 + 25.4 NA Intergenic Intergenic -9860 NM_175485 235472 Mm.469160 NM_175485 ENSMUSG00000036030 Prtg A230098A12Rik|Igdcc5 protogenin homolog (Gallus gallus) 0.032051 0.598726 -6.009016 chr7-423 chr7 30633022 30633178 + 25.4 NA promoter-TSS (NM_183257) promoter-TSS (NM_183257) -159 NM_183257 66438 Mm.389860 NM_183257 ENSMUSG00000056978 Hamp2 1810073K19Rik|HEPC2|MGC107568 hepcidin antimicrobial peptide 2 0.006410 0.579618 -3.875430 chr4-808 chr4 134369068 134369224 + 25.4 NA Intergenic Intergenic -23574 NM_019732 12399 Mm.378894 NM_019732 ENSMUSG00000070691 Runx3 AML2|Cbfa3|Pebp2a3 runt related transcription factor 3 0.006410 0.515924 -2.372539 chr2-773 chr2 74953596 74953752 + 25.4 NA Intergenic Intergenic 327024 NM_016804 53375 Mm.478750 NM_016804 ENSMUSG00000027099 Mtx2 1500012G02Rik metaxin 2 0.019231 0.394904 -7.736503 chr1-1030 chr1 132783004 132783160 + 25.4 NA Intergenic L1_Mur2|LINE|L1 -16295 NM_001009940 329244 Mm.131480 NM_001009940 ENSMUSG00000016524 Il19 - interleukin 19 0.006410 0.458599 -1.590797 chr2-751 chr2 65086391 65086547 + 25.4 NA Intergenic Intergenic -47004 NM_027225 319876 Mm.34159 NM_027225 ENSMUSG00000034903 Cobll1 1810047P18Rik|Coblr1|D430044D16Rik Cobl-like 1 0.012821 0.464968 1.497113 chr10-474 chr10 59827407 59827563 + 25.4 NA intron (NM_023370, intron 18 of 68) intron (NM_023370, intron 18 of 68) 32403 NM_001164374 100302688 Mm.444135 NM_001164374 LOC100302688 - hypothetical protein LOC100302688 0.012821 0.573248 -0.052474 chr17-412 chr17 12038678 12038834 + 25.4 NA intron (NM_026644, intron 2 of 8) intron (NM_026644, intron 2 of 8) 76115 NM_026644 68262 Mm.258300 NM_026644 ENSMUSG00000023827 Agpat4 1500003P24Rik 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 0.000000 0.554140 -6.457720 chr9-576 chr9 29889851 29890007 + 25.4 NA Intergenic Intergenic -177354 NM_172290 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 neurotrimin 0.012821 0.579618 1.707588 chr18-309 chr18 25857683 25857839 + 25.4 NA intron (NM_001146294, intron 1 of 12) intron (NM_001146294, intron 1 of 12) 39232 NM_133195 108013 Mm.266435 XM_001473121 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 0.019231 0.458599 3.258678 chr17-501 chr17 45336708 45336864 + 25.4 NA Intergenic Intergenic 151958 NM_001110267 22339 Mm.477156 NM_001025250 ENSMUSG00000023951 Vegfa Vegf|Vegf120|Vegf164|Vegf188|Vpf vascular endothelial growth factor A 0.006410 0.528662 -4.970585 chr3-600 chr3 121250763 121250919 + 25.4 NA intron (NM_178936, intron 1 of 7) intron (NM_178936, intron 1 of 7) 4498 NM_178936 99887 Mm.26088 NM_178936 ENSMUSG00000028132 Tmem56 4930577M16Rik|AU018104|AW109744|C730036B01Rik transmembrane protein 56 0.000000 0.394904 -2.375567 chr5-797 chr5 44478190 44478346 + 25.4 NA intron (NM_173764, intron 7 of 13) intron (NM_173764, intron 7 of 13) 36586 NM_173764 231225 Mm.30688 NM_173764 ENSMUSG00000046985 Tapt1 4932414K18Rik transmembrane anterior posterior transformation 1 0.025641 0.490446 -0.912473 chr11-676 chr11 20149566 20149722 + 25.4 NA promoter-TSS (NM_172260) promoter-TSS (NM_172260) -217 NM_172260 216543 Mm.260314 NM_172260 ENSMUSG00000044066 Cep68 6030463E10Rik|AI481761|BC027174|Kiaa0582|MGC6990 centrosomal protein 68 0.141026 0.694268 -3.413389 chr13-454 chr13 90127055 90127211 + 25.4 NA Intergenic Intergenic 89583 NM_001081249 13003 Mm.410783 NM_001081249 ENSMUSG00000021614 Vcan 5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf versican 0.006410 0.388535 -4.157830 chr2-847 chr2 135779683 135779839 + 25.4 NA intron (NM_172858, intron 7 of 9) intron (NM_172858, intron 7 of 9) 30394 NM_029530 76161 Mm.477854 NM_029530 ENSMUSG00000027270 6330527O06Rik 3110035N03Rik|BAD-LAMP RIKEN cDNA 6330527O06 gene 0.012821 0.414013 4.569630 chr7-458 chr7 66791849 66792005 + 25.4 NA intron (NM_001033877, intron 6 of 22) intron (NM_001033877, intron 6 of 22) 73243 NM_001033877 233332 Mm.445763 NM_001033877 ENSMUSG00000058145 Adamts17 - a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17 0.012821 0.541401 4.170419 chr11-805 chr11 85983562 85983718 + 25.4 NA intron (NM_178309, intron 6 of 19) intron (NM_178309, intron 6 of 19) 33748 NM_178309 237911 Mm.186143 NM_178309 ENSMUSG00000034329 Brip1 3110009N10Rik|8030460J03Rik|Bach1|OF BRCA1 interacting protein C-terminal helicase 1 0.006410 0.382166 -5.817241 chr5-741 chr5 5555747 5555903 + 25.4 NA intron (NM_153116, intron 4 of 9) intron (NM_153116, intron 4 of 9) 9682 NM_153116 207704 Mm.323984 NM_153116 ENSMUSG00000040464 Gtpbp10 4930545J22Rik|BC034507|MGC30495 GTP-binding protein 10 (putative) 0.000000 0.496815 -2.105194 chr7-523 chr7 112084755 112084911 + 25.4 NA intron (NM_177282, intron 3 of 19) intron (NM_177282, intron 3 of 19) 67817 NM_001193305 320878 Mm.52312 NM_001193305 ENSMUSG00000038244 Mical2 5330438E18Rik|9530064J02|KIAA0750|mKIAA0750 microtubule associated monoxygenase, calponin and LIM domain containing 2 0.025641 0.522293 -7.235641 chr5-818 chr5 65003838 65003994 + 25.4 NA Intergenic MLT1D|LTR|MaLR -78741 NM_008453 16599 Mm.439720 NM_008453 ENSMUSG00000029178 Klf3 9930027G08Rik|AL024007|Bklf|MGC151315|Tef-2 Kruppel-like factor 3 (basic) 0.000000 0.356688 -5.763711 chr1-947 chr1 78643408 78643564 + 25.4 NA Intergenic Intergenic -52486 NM_021342 57814 Mm.24386 NM_021342 ENSMUSG00000047330 Kcne4 AW487937|MiRP3 potassium voltage-gated channel, Isk-related subfamily, gene 4 0.006410 0.350318 -6.757273 chr5-974 chr5 131897500 131897656 + 25.4 NA intron (NM_177047, intron 5 of 18) intron (NM_177047, intron 5 of 18) -305353 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.006410 0.477707 -0.901104 chr3-574 chr3 101926715 101926871 + 25.4 NA Intergenic Intergenic 38491 NM_172295 242125 Mm.32900 NM_172295 ENSMUSG00000044313 BC037703 MGC47256 cDNA sequence BC037703 0.006410 0.554140 3.325068 chr5-802 chr5 45958325 45958481 + 25.4 NA intron (NM_019438, intron 1 of 20) intron (NM_019438, intron 1 of 20) 231 NM_019438 54392 Mm.32012 XM_485604 Ncapg 5730507H05Rik|Hcapg|MFT.M05.13|MGC169458 non-SMC condensin I complex, subunit G 0.134615 0.726115 -9.999692 chr7-578 chr7 132849614 132849770 + 25.4 NA intron (NM_009980, intron 3 of 10) intron (NM_009980, intron 3 of 10) 3898 NM_001170744 13017 Mm.389984 NM_001170744 ENSMUSG00000030970 Ctbp2 AA407280|D7Ertd45e|Gtrgeo6|Ribeye C-terminal binding protein 2 0.012821 0.528662 -2.707777 chr4-798 chr4 130642481 130642637 + 25.4 NA Intergenic L2|LINE|L2 426099 NM_010769 17180 Mm.271796 NM_010769 ENSMUSG00000040533 Matn1 CMP|Crtm|Mat1|matrilin-1 matrilin 1, cartilage matrix protein 0.025641 0.490446 4.529183 chr11-684 chr11 22890520 22890676 + 25.4 NA promoter-TSS (NM_009837) promoter-TSS (NM_009837) 6 NM_009837 12464 Mm.441628 NM_009837 ENSMUSG00000007739 Cct4 2610204B21Rik|A45|C78323|Cctd chaperonin containing Tcp1, subunit 4 (delta) 0.121795 0.707006 -6.170307 chr15-425 chr15 94583594 94583750 + 25.4 NA intron (NM_178789, intron 3 of 7) intron (NM_178789, intron 3 of 7) 126308 NM_178789 320709 Mm.74873 NM_178789 ENSMUSG00000063296 Tmem117 B930062P21Rik transmembrane protein 117 0.019231 0.509554 -2.099897 chr12-749 chr12 118318199 118318355 + 25.4 NA intron (NM_146040, intron 6 of 9) intron (NM_146040, intron 6 of 9) 32408 NM_146040 217946 Mm.281149 NM_146040 ENSMUSG00000021175 Cdca7l BC006933|JPO2|MGC11998 cell division cycle associated 7 like 0.000000 0.484076 -3.623418 chr13-499 chr13 114739414 114739570 + 25.4 NA promoter-TSS (NM_130796) promoter-TSS (NM_130796) -50 NM_130796 170625 Mm.33721 NM_130796 ENSMUSG00000042364 Snx18 Snag1 sorting nexin 18 0.147436 0.751592 -5.462716 chr15-365 chr15 57805994 57806150 + 25.4 NA Intergenic tRNA-Met_|tRNA|tRNA -9913 NM_173862 239463 Mm.221241 NM_173862 ENSMUSG00000051225 Fam83a MGC40696 family with sequence similarity 83, member A 0.057692 0.496815 -5.857751 chr14-221 chr14 22280062 22280218 + 25.4 NA intron (NM_010610, intron 14 of 28) intron (NM_010610, intron 14 of 28) -397017 NR_033550 791307 Mm.364384 NR_033550 Gm10248 ENSMUSG00000068680 predicted gene 10248 0.006410 0.503185 7.487693 chr5-996 chr5 138401834 138401990 + 25.4 NA promoter-TSS (NM_008568) promoter-TSS (NM_008568) 104 NM_021392 11781 Mm.113205 NM_021392 ENSMUSG00000019518 Ap4m1 4930443L05Rik|Ap4m4 adaptor-related protein complex AP-4, mu 1 0.089744 0.560510 -8.255808 chr19-252 chr19 47483545 47483701 + 25.4 NA intron (NM_001164717, intron 1 of 13) intron (NM_001164717, intron 1 of 13) 34099 NM_001164717 14218 Mm.127560 NM_001164717 ENSMUSG00000053617 Sh3pxd2a AI413738|C230050L11|EG329070|Fish|Gm5098|MGC144076|MGC190848|MGC190948|Sh3md1 SH3 and PX domains 2A 0.012821 0.535032 -3.268159 chr16-382 chr16 92113015 92113171 + 25.4 NA Intergenic Intergenic -68154 NM_134110 246133 Mm.156736 NM_134110 ENSMUSG00000039672 Kcne2 2200002I16Rik|AW048273|MiRP1 potassium voltage-gated channel, Isk-related subfamily, gene 2 0.006410 0.382166 -3.951582 chr6-635 chr6 115616609 115616765 + 25.4 NA intron (NM_029780, intron 1 of 16) intron (NM_029780, intron 1 of 16) 25567 NM_029780 110157 Mm.184163 NM_029780 ENSMUSG00000000441 Raf1 6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|MGC102375|Raf-1|c-Raf|v-Raf v-raf-leukemia viral oncogene 1 0.000000 0.484076 1.179224 chr13-387 chr13 38096915 38097071 + 25.4 NA Intergenic Intergenic 52233 NM_024242 71340 Mm.297130 NM_024242 ENSMUSG00000021428 Riok1 3110046C13Rik|5430416A05Rik|AL033302|Ad034|MGC7300 RIO kinase 1 (yeast) 0.019231 0.515924 -4.212750 chr5-954 chr5 123737269 123737425 + 25.4 NA Intergenic Intergenic 5372 NM_029594 76399 Mm.75049 XM_132344 ENSMUSG00000029437 Il31 1700013B14Rik interleukin 31 0.012821 0.439490 -3.262074 chr15-400 chr15 80599312 80599468 + 25.4 NA intron (NM_144812, intron 3 of 24) intron (NM_144812, intron 3 of 24) -26474 NM_177124 213988 Mm.412092 NM_144812 ENSMUSG00000047888 Tnrc6b 2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik|MGC28739 trinucleotide repeat containing 6b 0.000000 0.496815 1.694364 chr16-375 chr16 90011392 90011548 + 25.4 NA Intergenic Intergenic -19625 NR_033476 100038709 Mm.310902 NR_033476 Gm10789 ENSMUSG00000074924 predicted gene 10789 0.019231 0.547771 1.740238 chr12-579 chr12 51521465 51521621 + 25.4 NA intron (NM_008858, intron 1 of 18) intron (NM_008858, intron 1 of 18) 49687 NM_008858 18760 Mm.133719 NM_008858 ENSMUSG00000002688 Prkd1 PKD|PKD1|Pkcm|Prkcm protein kinase D1 0.006410 0.528662 -0.844890 chr3-562 chr3 96632848 96633004 + 25.4 NA Intergenic Intergenic -10435 NM_001009935 56338 Mm.475126 NM_001009935 ENSMUSG00000038393 Txnip 1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1 thioredoxin interacting protein 0.019231 0.363057 -3.821730 chr5-942 chr5 120821739 120821895 + 25.4 NA intron (NM_145853, intron 2 of 27) intron (NM_145853, intron 2 of 27) 27413 NM_145853 252972 Mm.114054 NM_145853 ENSMUSG00000032741 Tpcn1 5730403B01Rik|Tpc1|mKIAA1169 two pore channel 1 0.032051 0.649682 -7.175194 chr19-255 chr19 53542091 53542247 + 25.4 NA Intergenic Intergenic -24061 NR_028427 381232 Mm.248624 XM_001472370 5830416P10Rik 4833407H14Rik|5430437C04Rik|ENSMUSG00000074788|Gm10758 RIKEN cDNA 5830416P10 gene 0.032051 0.541401 -9.166799 chr2-887 chr2 164914388 164914544 + 25.4 NA intron (NM_174988, intron 1 of 11) intron (NM_174988, intron 1 of 11) 11476 NM_174988 104010 Mm.151819 NM_174988 ENSMUSG00000053166 Cdh22 - cadherin 22 0.006410 0.522293 -5.564735 chr8-605 chr8 127544742 127544898 + 25.4 NA intron (NM_175149, intron 1 of 3) intron (NM_175149, intron 1 of 3) 4639 NM_175149 69551 Mm.261920 NM_175149 ENSMUSG00000031983 2310022B05Rik - RIKEN cDNA 2310022B05 gene 0.000000 0.547771 0.913912 chr1-811 chr1 11136234 11136390 + 25.4 NA intron (NM_029525, intron 19 of 39) intron (NM_029525, intron 19 of 39) -112864 NM_001033636 109294 Mm.123247 XM_001475275 Prex2 6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 0.006410 0.433121 -4.419241 chr1-938 chr1 75329054 75329210 + 25.4 NA Intergenic Intergenic -4525 NM_183022 241118 Mm.110790 NM_183022 ENSMUSG00000033007 Accn4 Asic4|BNAC4 amiloride-sensitive cation channel 4, pituitary 0.057692 0.617834 -0.600279 chr4-822 chr4 137816055 137816211 + 25.4 NA Intergenic MIRb|SINE|MIR 79935 NM_029401 75718 Mm.251530 XM_144060 ENSMUSG00000028753 Vwa5b1 4931403E03Rik von Willebrand factor A domain containing 5B1 0.032051 0.509554 -6.063408 chr14-255 chr14 54836308 54836464 + 25.4 NA 3' UTR (NM_019820, exon 3 of 3) 3' UTR (NM_019820, exon 3 of 3) 1941 NM_019820 56410 Mm.97163 NM_019820 ENSMUSG00000040380 Cbln3 - cerebellin 3 precursor protein 0.006410 0.560510 -6.303741 chr2-834 chr2 124978942 124979098 + 25.4 NA Intergenic Intergenic 40065 NM_023595 110074 Mm.471988 NM_001159646 ENSMUSG00000027203 Dut 5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase deoxyuridine triphosphatase 0.006410 0.439490 -3.746037 chr1-1150 chr1 193018621 193018777 + 25.4 NA promoter-TSS (NM_025424) promoter-TSS (NM_025424) 34 NM_025424 66208 Mm.46444 NM_025424 ENSMUSG00000037499 Nenf 1110060M21Rik|SCIRP10|Spuf neuron derived neurotrophic factor 0.108974 0.770701 -1.700886 chr18-269 chr18 3009517 3009673 + 25.4 NA Intergenic Intergenic 113817 NM_001167539 100312476 Mm.480293 NM_001167539 Vmn1r238 - vomeronasal 1 receptor Vmn1r238 0.006410 0.445860 3.364525 chr18-378 chr18 81754724 81754880 + 25.4 NA Intergenic MLT2B1|LTR|ERVL -606165 NM_178280 20689 Mm.215917 NM_178280 ENSMUSG00000024565 Sall3 B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt sal-like 3 (Drosophila) 0.006410 0.484076 1.179223 chr6-548 chr6 78183671 78183827 + 25.4 NA Intergenic Intergenic -116644 NM_011036 18489 Mm.2553 NM_011036 ENSMUSG00000071356 Reg3b HIP|PAP1|Pap|REG-III regenerating islet-derived 3 beta 0.000000 0.420382 -0.676376 chr17-496 chr17 43697130 43697286 + 25.4 NA intron (NM_172621, intron 1 of 5) intron (NM_172621, intron 1 of 5) 45582 NM_172621 224796 Mm.37666 NM_172621 ENSMUSG00000023959 Clic5 5730531E12Rik|B330005L24|Gm322|jbg chloride intracellular channel 5 0.012821 0.388535 3.723897 chr2-913 chr2 174295094 174295250 + 25.4 NA intron (NM_001099328, intron 2 of 4) intron (NM_001099328, intron 2 of 4) 8700 NM_001099328 100043757 Mm.48711 XM_001480903 ENSMUSG00000050600 Zfp831 ENSMUSG00000050600|OTTMUSG00000017459|Rp23-45p4.1 zinc finger protein 831 0.000000 0.464968 1.740239 chr15-349 chr15 38463722 38463878 + 25.4 NA promoter-TSS (NM_001102458) promoter-TSS (NM_001102458) 55 NM_001102458 54375 Mm.250214 NM_001102458 ENSMUSG00000037458 Azin1 1700085L02Rik|AI414949|Oazi|Oazin antizyme inhibitor 1 0.057692 0.585987 -7.287967 chr1-869 chr1 46798180 46798336 + 25.4 NA promoter-TSS (NM_172653) promoter-TSS (NM_172653) -203 NM_172653 227059 Mm.233889 NM_172653 ENSMUSG00000025986 Slc39a10 2900042E17Rik|5430433I10|mKIAA1265 solute carrier family 39 (zinc transporter), member 10 0.179487 0.777070 -10.806560 chr6-615 chr6 110834192 110834348 + 25.4 NA intron (NM_177328, intron 1 of 9) intron (NM_177328, intron 1 of 9) 222896 NM_177328 108073 Mm.240881 NM_177328 ENSMUSG00000056755 Grm7 6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|MGC90857|mGluR7 glutamate receptor, metabotropic 7 0.000000 0.394904 -4.981359 chr8-440 chr8 11074486 11074642 + 25.4 NA Intergenic Intergenic -66162 NM_001081212 384783 Mm.407207 NM_001081212 Irs2 Irs-2 insulin receptor substrate 2 0.006410 0.401274 -3.304648 chr2-663 chr2 10048547 10048703 + 25.4 NA promoter-TSS (NM_010582) promoter-TSS (NM_010582) -89 NM_010582 16425 Mm.182043 NM_010582 ENSMUSG00000037254 Itih2 AI747202|Intin2|Itih-2 inter-alpha trypsin inhibitor, heavy chain 2 0.000000 0.496815 2.247545 chr1-956 chr1 80876199 80876355 + 25.4 NA Intergenic Intergenic -80063 NM_172849 241134 Mm.313904 NM_172849 ENSMUSG00000054976 9430031J16Rik Jr6|Kiaa1486|MGC90544 RIKEN cDNA 9430031J16 gene 0.006410 0.375796 -0.677331 chr1-818 chr1 14817726 14817882 + 25.4 NA Intergenic RMER19B|LTR|ERVK -76624 NM_010827 17681 Mm.5820 NM_010827 ENSMUSG00000025930 Msc MyoR|bHLHa22 musculin 0.000000 0.490446 -0.381651 chr12-670 chr12 88322879 88323035 + 25.4 NA intron (NM_001102565, intron 4 of 5) intron (NM_001102565, intron 4 of 5) 9985 NM_001102565 211064 Mm.26840 NM_001102565 Alkbh1 2700073G19Rik|Abh|Alkbh|alkB|hABH alkB, alkylation repair homolog 1 (E. coli) 0.019231 0.522293 -0.251180 chr7-402 chr7 11909997 11910153 + 25.4 NA promoter-TSS (NM_001024699) promoter-TSS (NM_001024699) -96 NM_001024699 232879 Mm.279272 NM_001024699 ENSMUSG00000049600 Zbtb45 BB161562|Gm157|MGC106784|Zfp499 zinc finger and BTB domain containing 45 0.096154 0.598726 -0.577367 chr7-508 chr7 109595583 109595739 + 25.4 NA intron (NM_020052, intron 20 of 21) intron (NM_020052, intron 20 of 21) -22939 NM_020610 78593 Mm.275374 NM_020610 ENSMUSG00000034825 Nrip3 A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2 nuclear receptor interacting protein 3 0.006410 0.573248 -4.289730 chr14-265 chr14 62863090 62863246 + 25.4 NA intron (NM_028228, intron 6 of 6) intron (NM_028228, intron 6 of 6) -34647 NM_011446 20680 Mm.42162 NM_011446 ENSMUSG00000063060 Sox7 - SRY-box containing gene 7 0.019231 0.477707 -2.902108 chr2-683 chr2 26290962 26291118 + 25.4 NA intron (NM_008714, intron 24 of 33) intron (NM_008714, intron 24 of 33) -23815 NM_153125 227648 Mm.206371 NM_153125 ENSMUSG00000026924 Sec16a AU024582|C230052J16Rik|MGC38812|RP23-306D20.10 SEC16 homolog A (S. cerevisiae) 0.000000 0.471338 -5.359476 chr3-619 chr3 129746604 129746760 + 25.4 NA intron (NM_010113, intron 1 of 23) intron (NM_010113, intron 1 of 23) 662 NM_010113 13645 Mm.480769 NM_010113 ENSMUSG00000028017 Egf AI790464 epidermal growth factor 0.032051 0.471338 -1.865705 chr11-865 chr11 104041937 104042093 + 25.4 NA Intergenic Intergenic -5510 NM_001038609 17762 Mm.1287 NM_001038609 ENSMUSG00000018411 Mapt AI413597|AW045860|Mtapt|Tau microtubule-associated protein tau 0.006410 0.522293 -0.866114 chr12-744 chr12 117549376 117549532 + 25.4 NA intron (NM_011215, intron 12 of 22) intron (NM_011215, intron 12 of 22) 43824 NR_033538 100038689 Mm.445351 NR_033538 Gm10421 ENSMUSG00000072792 predicted gene 10421 0.044872 0.452229 -7.953921 chr5-783 chr5 36516568 36516724 + 25.4 NA intron (NM_030889, intron 2 of 26) intron (NM_030889, intron 2 of 26) -4235 NM_175249 76943 Mm.44242 NM_175249 ENSMUSG00000043430 Psapl1 2310020A21Rik prosaposin-like 1 0.006410 0.554140 0.888871 chr10-485 chr10 66451824 66451980 + 25.4 NA intron (NM_178606, intron 2 of 7) intron (NM_178606, intron 2 of 7) 40312 NM_178606 28193 Mm.41272 NM_178606 ENSMUSG00000019873 Reep3 AI265725|AW742655|D10Ucla1 receptor accessory protein 3 0.025641 0.458599 -0.636473 chr3-635 chr3 139531655 139531811 + 25.4 NA intron (NM_198659, intron 12 of 13) intron (NM_198659, intron 12 of 13) 388454 NM_198659 381476 Mm.188334 NM_198659 ENSMUSG00000047940 B930007M17Rik Gm1017 RIKEN cDNA B930007M17 gene 0.000000 0.363057 2.083963 chr2-781 chr2 79569310 79569466 + 25.4 NA intron (NM_172420, intron 4 of 4) intron (NM_172420, intron 4 of 4) 60770 NM_172420 75276 Mm.257373 NM_172420 ENSMUSG00000034683 Ppp1r1c 4930565M23Rik|4930579P15Rik protein phosphatase 1, regulatory (inhibitor) subunit 1C 0.019231 0.452229 -7.505029 chr19-233 chr19 33165289 33165445 + 25.4 NA Intergenic Intergenic 292925 NM_001167818 67795 Mm.204591 XM_001481318 ENSMUSG00000071573 Rnls 6530404N21Rik|AI452315|AW060440|C10orf59 renalase, FAD-dependent amine oxidase 0.025641 0.445860 0.846949 chr5-1000 chr5 139732770 139732926 + 25.4 NA intron (NM_133349, intron 3 of 6) intron (NM_133349, intron 3 of 6) 5285 NM_133349 100494 Mm.24521 NM_001159908 ENSMUSG00000053581 Zfand2a AA407930|AU016206|Airap zinc finger, AN1-type domain 2A 0.006410 0.560510 -3.560395 chr14-282 chr14 90188901 90189057 + 25.4 NA Intergenic Intergenic 1445477 NR_002862 328451 Mm.320571 NR_002862 Gm5088 EG328451|Pabpc4l poly(A)-binding protein, cytoplasmic pseudogene 0.000000 0.318471 -2.954120 chr15-373 chr15 62175758 62175914 + 25.4 NA Intergenic Intergenic -126719 NR_003523 67552 Mm.4608 NR_003523 H2afy3 4933432H23Rik H2A histone family, member Y3 0.006410 0.477707 -1.426122 chr2-741 chr2 58599083 58599239 + 25.4 NA intron (NM_029692, intron 6 of 6) intron (NM_029692, intron 6 of 6) 28591 NM_029692 76654 Mm.437094 NM_029692 ENSMUSG00000026839 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 0.000000 0.471338 -3.439675 chr4-710 chr4 87004617 87004773 + 25.4 NA Intergenic Intergenic 272850 NM_029931 70122 Mm.288898 NM_027326 ENSMUSG00000028496 Mllt3 2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 0.006410 0.452229 -4.740856 chr1-845 chr1 36479514 36479670 + 25.4 NA intron (NM_153502, intron 1 of 8) intron (NM_153502, intron 1 of 8) 683 NM_153502 78321 Mm.41421 NM_153502 ENSMUSG00000067653 Ankrd23 1110058D09Rik|2310041C05Rik|AI853437|Darp|MARP3 ankyrin repeat domain 23 0.012821 0.560510 -1.973318 chr7-490 chr7 96533490 96533646 + 25.4 NA intron (NM_011858, intron 5 of 32) intron (NM_011858, intron 5 of 32) -293150 NM_153591 244141 Mm.274864 NM_153591 ENSMUSG00000018995 Nars2 AI875199|MGC41336 asparaginyl-tRNA synthetase 2 (mitochondrial)(putative) 0.038462 0.528662 1.461624 chrX-103 chrX 99947416 99947572 + 25.4 NA intron (NM_009197, intron 1 of 5) intron (NM_009197, intron 1 of 5) 18770 NM_001170979 621381 Mm.440273 XM_887206 Gm6222 EG621381 predicted pseudogene 6222 0.025641 0.535032 -4.366917 chr16-397 chr16 94505574 94505730 + 25.4 NA intron (NM_009441, intron 10 of 45) intron (NM_009441, intron 10 of 45) -25839 NM_001159617 56176 Mm.474449 NM_001159616 ENSMUSG00000022940 Pigp Dcrc|Dscr5 phosphatidylinositol glycan anchor biosynthesis, class P 0.032051 0.535032 4.752529 chr5-851 chr5 88944746 88944902 + 25.4 NA Intergenic Intergenic -15431 NM_027128 69592 Mm.389652 NM_027128 ENSMUSG00000009580 Odam 2310011G06Rik|APIN odontogenic, ameloblast asssociated 0.006410 0.509554 -6.937588 chr9-644 chr9 60300357 60300513 + 25.4 NA intron (NM_001040426, intron 1 of 17) intron (NM_001040426, intron 1 of 17) 8606 NM_001040426 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.006410 0.515924 -5.886438 chr13-485 chr13 103939649 103939805 + 25.4 NA intron (NM_175171, intron 5 of 28) intron (NM_175171, intron 5 of 28) 125788 NM_008533 17079 Mm.373974 NM_008533 ENSMUSG00000021624 Cd180 F630107B15|Ly78|RP105 CD180 antigen 0.000000 0.414013 6.930198 chr18-282 chr18 9471677 9471833 + 25.4 NA Intergenic Intergenic -21607 NM_026484 67974 Mm.376607 NM_026484 ENSMUSG00000024286 Ccny 1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik cyclin Y 0.006410 0.382166 1.023659 chr11-898 chr11 113808111 113808267 + 25.4 NA intron (NM_172800, intron 1 of 44) intron (NM_172800, intron 1 of 44) 73852 NM_172800 237979 Mm.401394 NM_172800 ENSMUSG00000041592 Sdk2 4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514 sidekick homolog 2 (chicken) 0.019231 0.547771 -4.424357 chr3-567 chr3 97986485 97986641 + 25.4 NA promoter-TSS (NM_011342) promoter-TSS (NM_011342) -68 NM_011342 20333 Mm.2551 NM_011342 ENSMUSG00000027879 Sec22b 4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) 0.057692 0.528662 -3.595239 chr15-422 chr15 92485676 92485832 + 25.4 NA intron (NM_001164594, intron 1 of 7) intron (NM_001164594, intron 1 of 7) 60466 NM_001164594 239618 Mm.479306 XM_001481302 Pdzrn4 1110017D07Rik|KIAA3027|LNX4|SAMCAP3L|mKIAA3027 PDZ domain containing RING finger 4 0.000000 0.439490 -3.565742 chr1-1138 chr1 187507765 187507921 + 25.4 NA Intergenic Intergenic 309750 NR_033600 114668 Mm.379303 NR_033600 5033404E19Rik - RIKEN cDNA 5033404E19 gene 0.006410 0.452229 -7.147694 chr8-468 chr8 23651463 23651619 + 25.4 NA promoter-TSS (NM_001004140) promoter-TSS (NM_001004140) -177 NM_001004140 80986 Mm.22448 NM_001004140 ENSMUSG00000037725 Ckap2 AI461656|AW228814|LB1 cytoskeleton associated protein 2 0.032051 0.522293 -7.504265 chr17-523 chr17 56447111 56447267 + 25.4 NA Intergenic CpG -2685 NM_144858 224907 Mm.293973 NM_144858 ENSMUSG00000007603 Dus3l AI662135|AW557805|MGC56820 dihydrouridine synthase 3-like (S. cerevisiae) 0.064103 0.675159 -4.543546 chr17-394 chr17 6364816 6364972 + 25.4 NA intron (NM_001166627, intron 1 of 4).2 intron (NM_001166627, intron 1 of 4).2 521 NM_001166630 100040563 Mm.458102 XM_001475539 ENSMUSG00000000579 Dynlt1c - dynein light chain Tctex-type 1C 0.076923 0.656051 -5.746584 chr16-327 chr16 30053659 30053815 + 25.4 NA Intergenic Intergenic 68634 NM_008235 15205 Mm.390859 NM_008235 ENSMUSG00000022528 Hes1 Hry|bHLHb39 hairy and enhancer of split 1 (Drosophila) 0.006410 0.414013 -2.356844 chr4-749 chr4 106494333 106494489 + 25.4 NA intron (NM_023672, intron 4 of 17) intron (NM_023672, intron 4 of 17) 70387 NM_025500 56280 Mm.29517 NM_025500 ENSMUSG00000028622 Mrpl37 2300004O14Rik|AI132596|MRP-L2|Rpml2 mitochondrial ribosomal protein L37 0.000000 0.560510 -6.334997 chr9-645 chr9 60316413 60316569 + 25.4 NA Intergenic Intergenic -7450 NM_001040426 207596 Mm.379523 XM_001473511 ENSMUSG00000032289 Thsd4 AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 0.019231 0.643312 2.093339 chr8-486 chr8 37310908 37311064 + 25.4 NA Intergenic Intergenic -15910 NM_027998 71908 Mm.37817 NM_027998 ENSMUSG00000055976 Cldn23 2310014B08Rik claudin 23 0.012821 0.439490 -3.081923 chr18-330 chr18 43299783 43299939 + 25.4 NA Intergenic Intergenic -33166 NM_178749 269019 Mm.150401 NM_178749 ENSMUSG00000039954 Stk32a A930015B13Rik|YANK1 serine/threonine kinase 32A 0.044872 0.452229 -1.072511 chr5-926 chr5 116923339 116923495 + 25.4 NA Intergenic Intergenic -70601 NM_026886 68955 Mm.146779 NM_026886 ENSMUSG00000063919 Srrm4 1500001A10Rik|B230202K19Rik|mKIAA1853|nSR100 serine/arginine repetitive matrix 4 0.025641 0.477707 0.164090 chr2-687 chr2 27297521 27297677 + 25.4 NA promoter-TSS (NM_001113574) promoter-TSS (NM_001113574) 83 NM_001113573 67382 Mm.28721 NM_001113573 ENSMUSG00000026918 Brd3 2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3 bromodomain containing 3 0.153846 0.726115 2.781315 chr16-351 chr16 50439160 50439316 + 25.4 NA Intergenic L2|LINE|L2 71264 NM_027046 69339 Mm.422869 NM_027046 ENSMUSG00000050685 Ccdc54 1700007N18Rik|AI644412|BB013989|NYD-SP17 coiled-coil domain containing 54 0.012821 0.585987 4.752529 chr13-491 chr13 111244795 111244951 + 25.4 NA intron (NM_023852, intron 3 of 4) intron (NM_023852, intron 3 of 4) 156211 NM_023852 67295 Mm.151600 NM_023852 ENSMUSG00000021700 Rab3c 2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886|MGC124069 RAB3C, member RAS oncogene family 0.006410 0.331210 -8.729251 chr5-768 chr5 31528218 31528374 + 25.4 NA promoter-TSS (NM_027221) promoter-TSS (NM_027221) 10 NM_027221 69815 Mm.389609 NM_027221 ENSMUSG00000029149 Krtcap3 2010001C09Rik|AW321088|Kcp3|MGC129450|MGC129451 keratinocyte associated protein 3 0.102564 0.726115 -5.235134 chr16-311 chr16 18004997 18005153 + 25.4 NA Intergenic ID_B1|SINE|B4 -2322 NM_011172 19125 Mm.28456 NM_011172 ENSMUSG00000003526 Prodh MGC159030|Pro-1|Pro1|Ym24d07 proline dehydrogenase 0.000000 0.484076 -2.132266 chr4-871 chr4 152372681 152372837 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -46129 NM_001099299 230959 Mm.318874 XM_001475023 ENSMUSG00000039546 Ajap1 Gm573 adherens junction associated protein 1 0.000000 0.401274 -8.986605 chr16-336 chr16 32899412 32899568 + 25.4 NA intron (NM_001081255, intron 9 of 20) intron (NM_001081255, intron 9 of 20) 65644 NM_001081255 70144 Mm.227918 NM_001081255 ENSMUSG00000022801 Lrch3 2210409B11Rik|AW215594|Gm1742 leucine-rich repeats and calponin homology (CH) domain containing 3 0.019231 0.420382 -3.769584 chr1-950 chr1 79511582 79511738 + 25.4 NA intron (NM_183027, intron 1 of 4) intron (NM_183027, intron 1 of 4) 39336 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 0.019231 0.394904 -4.699459 chr11-705 chr11 49901258 49901414 + 25.4 NA intron (NM_021540, intron 2 of 8) intron (NM_021540, intron 2 of 8) -11788 NR_029769 723845 NR_029769 Mir340 Mirn340|mmu-mir-340 microRNA 340 0.006410 0.407643 -4.767300 chr11-751 chr11 68888601 68888757 + 25.4 NA exon (NM_025838, exon 4 of 5) exon (NM_025838, exon 4 of 5) 1676 NM_028336 66910 Mm.33964 NM_025838 ENSMUSG00000020895 Tmem107 1110004B13Rik|2810049P21Rik transmembrane protein 107 0.038462 0.522293 -2.518273 chr7-472 chr7 80025853 80026009 + 25.4 NA TTS (NR_035491) TTS (NR_035491) 597 NR_035491 100316758 NR_035491 Mir1965 mmu-mir-1965 microRNA mir-1965 0.019231 0.458599 -4.157831 chr4-673 chr4 62005961 62006117 + 25.4 NA intron (NM_008525, intron 1 of 11) intron (NM_008525, intron 1 of 11) 385 NM_008525 17025 Mm.6988 NM_008525 ENSMUSG00000028393 Alad Lv aminolevulinate, delta-, dehydratase 0.070513 0.611465 -0.950617 chr3-624 chr3 132856097 132856253 + 25.4 NA intron (NM_001029836, intron 2 of 11) intron (NM_001029836, intron 2 of 11) 31422 NM_001029836 114249 Mm.279310 NM_001029836 ENSMUSG00000040998 Npnt 1110009H02Rik|AA682063|AI314031|Nctn|POEM nephronectin 0.019231 0.439490 -1.221143 chr11-719 chr11 54294529 54294685 + 25.4 NA intron (NM_173753, intron 1 of 17) intron (NM_173753, intron 1 of 17) 13006 NM_173753 216742 Mm.34087 NM_173753 ENSMUSG00000035992 Fnip1 A730024A03Rik|AI838773|AW557298|KIAA1961|MGC100017 folliculin interacting protein 1 0.000000 0.407643 8.157310 chr12-689 chr12 102513636 102513792 + 25.4 NA Intergenic Intergenic -16754 NM_172152 238384 Mm.312448 NM_172152 ENSMUSG00000041771 Slc24a4 A930002M03Rik|AW492432|NCKX4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 0.019231 0.426752 -1.081755 chr12-642 chr12 81517207 81517363 + 25.4 NA intron (NM_001081421, intron 14 of 14) intron (NM_001081421, intron 14 of 14) 45424 NM_007951 13877 Mm.378913 NM_007951 ENSMUSG00000021131 Erh MGC103398|MGC130271|MGC130272|Mer|Prei1 enhancer of rudimentary homolog (Drosophila) 0.019231 0.484076 3.179486 chr12-679 chr12 93548056 93548212 + 25.4 NA Intergenic Intergenic -1293420 NM_011344 20338 Mm.250605 NM_001039089 ENSMUSG00000020964 Sel1l AW493766|KIAA4137|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) 0.012821 0.401274 -3.211575 chr2-863 chr2 152426405 152426561 + 25.4 NA Intergenic CpG -1231 NM_010495 15901 Mm.444 NM_010495 ENSMUSG00000042745 Id1 AI323524|D2Wsu140e|Idb1|bHLHb24 inhibitor of DNA binding 1 0.057692 0.681529 -6.009015 chr9-585 chr9 36766076 36766232 + 25.4 NA intron (NM_001029838, intron 2 of 12) intron (NM_001029838, intron 2 of 12) 130783 NM_001029838 208076 Mm.260335 NM_001029838 ENSMUSG00000035934 Pknox2 D230005H23Rik|Prep2 Pbx/knotted 1 homeobox 2 0.000000 0.490446 -0.466844 chr6-516 chr6 53835565 53835721 + 25.4 NA intron (NM_027749, intron 11 of 12) intron (NM_027749, intron 11 of 12) 72597 NM_027749 71287 Mm.158654 XM_906883 ENSMUSG00000052955 Cpvl 4933436L16Rik|HVLP carboxypeptidase, vitellogenic-like 0.006410 0.464968 -4.067188 chr9-678 chr9 71788290 71788446 + 25.4 NA intron (NM_011544, intron 5 of 20) intron (NM_011544, intron 5 of 20) 122011 NM_011544 21406 Mm.480117 NM_011544 ENSMUSG00000032228 Tcf12 A130037E08Rik|ALF1|HEB|HTF-4|HTF4|ME1|REB|bHLHb20 transcription factor 12 0.006410 0.369427 -0.179244 chr9-697 chr9 85545902 85546058 + 25.4 NA Intergenic CpG -5103 NM_001081282 108837 Mm.22315 NM_001081282 ENSMUSG00000035941 Ibtk 5430411K16Rik|AA409502|BTKI|mKIAA1417 inhibitor of Bruton agammaglobulinemia tyrosine kinase 0.121795 0.687898 -7.709220 chr10-521 chr10 80929336 80929492 + 25.4 NA Intergenic RSINE1|SINE|B4 -2060 NM_010304 14676 Mm.1546 NM_010304 ENSMUSG00000034792 Gna15 G[a]15|Galpha15 guanine nucleotide binding protein, alpha 15 0.019231 0.445860 1.980489 chr6-533 chr6 62925332 62925488 + 25.4 NA Intergenic RLTR9A|LTR|ERVK -261024 NM_008167 14804 Mm.447390 NM_008167 ENSMUSG00000071424 Grid2 B230104L07Rik|GluRdelta2|Lc|Lc|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr glutamate receptor, ionotropic, delta 2 0.006410 0.547771 -4.268958 chr2-872 chr2 156000051 156000207 + 25.4 NA 3' UTR (NM_172674, exon 18 of 18) 3' UTR (NM_172674, exon 18 of 18) -3784 NM_027585 70873 Mm.475234 NM_027585 4921517L17Rik 5430421B09Rik RIKEN cDNA 4921517L17 gene 0.012821 0.331210 -5.058862 chr13-414 chr13 52005399 52005555 + 25.4 NA Intergenic Intergenic 146307 NM_011817 23882 Mm.281298 NM_011817 ENSMUSG00000021453 Gadd45g AI327420|C86281|CR6|DDIT2|OIG37 growth arrest and DNA-damage-inducible 45 gamma 0.006410 0.464968 2.635792 chr19-262 chr19 57165963 57166119 + 25.4 NA intron (NM_178688, intron 6 of 24) intron (NM_178688, intron 6 of 24) 6218 NM_001103178 226251 Mm.446592 NM_001103177 ENSMUSG00000025085 Ablim1 2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|abLIM-L|abLIM-M|abLIM-S|mKIAA0059 actin-binding LIM protein 1 0.012821 0.490446 -4.761953 chr4-622 chr4 21818422 21818578 + 25.4 NA promoter-TSS (NM_016746) promoter-TSS (NM_016746) -37 NM_001122982 51813 Mm.278584 NM_001122982 ENSMUSG00000028252 Ccnc AI451004|AU020987|CG1C cyclin C 0.108974 0.636943 -9.732573 chr5-782 chr5 36224684 36224840 + 25.4 NA intron (NM_027373, intron 1 of 16) intron (NM_027373, intron 1 of 16) 14583 NM_027373 70292 Mm.125167 NM_027373 ENSMUSG00000029094 Afap1 2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018 actin filament associated protein 1 0.019231 0.503185 -3.202785 chr10-435 chr10 6963098 6963254 + 25.4 NA intron (NM_133485, intron 1 of 3) intron (NM_133485, intron 1 of 3) 17215 NM_133485 76142 Mm.308126 XM_001471789 ENSMUSG00000040653 Ppp1r14c 6330514J04Rik|KEPI protein phosphatase 1, regulatory (inhibitor) subunit 14c 0.012821 0.401274 -4.746119 chr3-485 chr3 26322187 26322343 + 25.4 NA intron (NM_138666, intron 3 of 7) intron (NM_138666, intron 3 of 7) 22115 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.006410 0.369427 -5.915001 chr1-825 chr1 21549791 21549947 + 25.4 NA intron (NM_023872, intron 2 of 13) intron (NM_023872, intron 2 of 13) 181163 NM_001113187 98582 Mm.326336 NM_001113187 Khdc1b AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c KH domain containing 1B 0.000000 0.363057 1.499668 chr11-806 chr11 86561563 86561719 + 25.4 NA intron (NM_001003908, intron 1 of 31) intron (NM_001003908, intron 1 of 31) 12046 NM_001003908 67300 Mm.479526 NM_001003908 ENSMUSG00000047126 Cltc 3110065L21Rik|CHC|MGC92975|R74732 clathrin, heavy polypeptide (Hc) 0.012821 0.414013 2.120927 chr2-894 chr2 166033698 166033854 + 25.4 NA Intergenic Intergenic 68664 NR_033467 670775 Mm.384326 XM_001478235 Gm11468 OTTMUSG00000001131 predicted gene 11468 0.025641 0.522293 -3.872824 chr7-566 chr7 129807508 129807664 + 25.4 NA Intergenic Intergenic 250370 NM_010207 14183 Mm.16340 NM_010207 ENSMUSG00000030849 Fgfr2 AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFRTr|MGC102519|svs fibroblast growth factor receptor 2 0.012821 0.394904 -2.567052 chr6-564 chr6 87698975 87699131 + 25.4 NA intron (NM_001159697, intron 2 of 7) intron (NM_001159697, intron 2 of 7) 2544 NM_001159697 58229 Mm.333229 XM_001478848 ENSMUSG00000030053 Ccdc48 - coiled-coil domain containing 48 0.006410 0.484076 -1.843841 chr17-528 chr17 61679258 61679414 + 25.4 NA Intergenic Intergenic 887443 NM_207654 13640 Mm.401670 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 0.012821 0.394904 -3.763593 chr17-489 chr17 41869205 41869361 + 25.4 NA intron (NM_028474, intron 3 of 3) intron (NM_028474, intron 3 of 3) 89853 NM_028474 627626 Mm.390999 XM_001000454 3110082D06Rik Gm321 RIKEN cDNA 3110082D06 gene 0.006410 0.369427 -4.808916 chr11-750 chr11 68867056 68867212 + 25.4 NA exon (NM_011496, exon 8 of 8) exon (NM_011496, exon 8 of 8) 5297 NM_011496 20877 Mm.3488 NM_011496 ENSMUSG00000020897 Aurkb AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5 aurora kinase B 0.032051 0.598726 2.140518 chr14-239 chr14 31927309 31927465 + 25.4 NA intron (NM_001146022, intron 23 of 58) intron (NM_001146022, intron 23 of 58) 86771 NM_001146022 545030 Mm.318345 XM_619220 Wdfy4 - WD repeat and FYVE domain containing 4 0.006410 0.458599 1.732351 chr16-294 chr16 8116913 8117069 + 25.4 NA Intergenic Intergenic 223466 NM_029070 74720 Mm.159318 NM_029070 ENSMUSG00000022715 Tmem114 4930511J11Rik transmembrane protein 114 0.006410 0.394904 0.833388 chr10-587 chr10 125364590 125364746 + 25.4 NA Intergenic Intergenic -4499 NM_177152 320398 Mm.275586 NM_177152 ENSMUSG00000020105 Lrig3 9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016 leucine-rich repeats and immunoglobulin-like domains 3 0.019231 0.515924 0.251150 chr3-607 chr3 124312959 124313115 + 25.4 NA promoter-TSS (NM_146140) promoter-TSS (NM_146140) -21 NM_146140 229801 Mm.165810 NM_146140 ENSMUSG00000044528 Tram1l1 A830091N21Rik|MGC38777 translocation associated membrane protein 1-like 1 0.134615 0.726115 -4.313395 chr4-852 chr4 149215688 149215844 + 25.4 NA intron (NM_001085492, intron 1 of 22) intron (NM_001085492, intron 1 of 22) 90051 NM_001085492 68703 Mm.291274 XM_204015 ENSMUSG00000039852 Rere 1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|mKIAA0458 arginine glutamic acid dipeptide (RE) repeats 0.115385 0.751592 -3.357328 chr2-844 chr2 132443055 132443211 + 25.4 NA TTS (NM_028637) TTS (NM_028637) -29585 NM_007694 12653 Mm.255241 NM_007694 ENSMUSG00000027350 Chgb Scg-1 chromogranin B 0.019231 0.535032 -2.523620 chr17-488 chr17 41584335 41584491 + 25.4 NA Intergenic RMER19C|LTR|ERVK -195017 NM_028474 627626 Mm.390999 XM_001000454 3110082D06Rik Gm321 RIKEN cDNA 3110082D06 gene 0.000000 0.420382 -5.296421 chr4-706 chr4 86863485 86863641 + 25.4 NA Intergenic MLT1A0|LTR|MaLR -161792 NM_172426 76376 Mm.127296 NM_001110240 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 0.000000 0.414013 5.355157 chr10-437 chr10 8619191 8619347 + 25.4 NA Intergenic Intergenic -43009 NM_175155 70097 Mm.338275 NM_175155 ENSMUSG00000015305 Sash1 1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790 SAM and SH3 domain containing 1 0.012821 0.477707 2.135292 chr10-477 chr10 60967275 60967431 + 25.4 NA intron (NM_153542, intron 4 of 4) intron (NM_153542, intron 4 of 4) -23487 NM_001177511 237362 Mm.131297 XM_137119 Npffr1 Gm236|Gpr147|NPFF1|OT7T022 neuropeptide FF receptor 1 0.044872 0.560510 -1.072511 chr5-911 chr5 113382841 113382997 + 25.4 NA intron (NM_172884, intron 1 of 7) intron (NM_172884, intron 1 of 7) 20697 NM_172884 243219 Mm.160131 NM_172884 ENSMUSG00000051339 2900026A02Rik 8430408O14Rik|A530094D01|AW539426|Gm449|KIAA1671|mKIAA1671 RIKEN cDNA 2900026A02 gene 0.032051 0.579618 -3.317630 chr11-722 chr11 54786144 54786300 + 25.4 NA intron (NM_021327, intron 1 of 17) intron (NM_021327, intron 1 of 17) 20139 NM_021327 57783 Mm.259671 NM_021327 ENSMUSG00000020400 Tnip1 ABIN|ABIN1|AU018810|Naf1|Nef|VAN TNFAIP3 interacting protein 1 0.012821 0.490446 0.270436 chr15-314 chr15 8649622 8649778 + 25.4 NA intron (NM_148938, intron 2 of 9) intron (NM_148938, intron 2 of 9) 8322 NM_148938 20512 Mm.204834 NM_148938 ENSMUSG00000005360 Slc1a3 AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 0.025641 0.484076 3.179486 chr16-322 chr16 26496926 26497082 + 25.4 NA promoter-TSS (NM_001159317) promoter-TSS (NM_001159317) -54 NM_001159318 16180 Mm.253424 NM_001159317 ENSMUSG00000022514 Il1rap 6430709H04Rik|AI255955|AV239853|IL-1RAcP interleukin 1 receptor accessory protein 0.128205 0.732484 -9.870750 chr16-378 chr16 91297001 91297157 + 25.4 NA intron (NM_008349, intron 2 of 6) intron (NM_008349, intron 2 of 6) 1986 NM_008349 16155 Mm.4154 NM_008349 ENSMUSG00000022969 Il10rb 6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2 interleukin 10 receptor, beta 0.012821 0.585987 3.646926 chr14-230 chr14 29530441 29530597 + 25.4 NA Intergenic Intergenic -13338 NM_019460 54650 Mm.294662 NM_001166531 ENSMUSG00000006527 Sfmbt1 4930442N21Rik|9330180L21Rik|AA536974|DKFZp434L243|Sfmbt|Smr Scm-like with four mbt domains 1 0.000000 0.484076 -2.084324 chr8-622 chr8 131430700 131430856 + 25.4 NA Intergenic Intergenic -140965 NM_010578 16412 Mm.263396 NM_010578 ENSMUSG00000025809 Itgb1 4633401G24Rik|AA409975|AA960159|CD29|Fnrb|gpIIa integrin beta 1 (fibronectin receptor beta) 0.000000 0.471338 -5.077075 chr1-1160 chr1 196382618 196382774 + 25.4 NA intron (NM_008882, intron 3 of 31) intron (NM_008882, intron 3 of 31) 62144 NM_008882 18845 Mm.2251 NM_008882 ENSMUSG00000026640 Plxna2 2810428A13Rik|AA589422|AW457381|OCT|Plxn2|mKIAA0463 plexin A2 0.000000 0.471338 -4.813133 chr15-318 chr15 24903301 24903457 + 25.4 NA Intergenic Intergenic 455110 NM_027395 70350 Mm.29586 NM_027395 ENSMUSG00000045763 Basp1 2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 0.012821 0.401274 -9.000731 chr1-836 chr1 34234984 34235140 + 25.4 NA exon (NM_133833, exon 82 of 93) exon (NM_133833, exon 82 of 93) 149156 NM_027159 69668 Mm.379170 NM_027159 ENSMUSG00000042111 Ccdc115 2310061I09Rik|Ccp1 coiled-coil domain containing 115 0.025641 0.503185 -3.308296 chr19-185 chr19 3363663 3363819 + 25.4 NA intron (NM_013495, intron 6 of 18) intron (NM_013495, intron 6 of 18) -25127 NM_001039658 17771 Mm.209941 NM_001039657 ENSMUSG00000024905 Mtl5 tesmin metallothionein-like 5, testis-specific (tesmin) 0.019231 0.592357 -4.648458 chr13-373 chr13 29834114 29834270 + 25.4 NA intron (NM_144536, intron 4 of 15) intron (NM_144536, intron 4 of 15) 28861 NM_144536 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik CDK5 regulatory subunit associated protein 1-like 1 0.006410 0.401274 -0.388515 chr12-639 chr12 81042309 81042465 + 25.4 NA 3' UTR (NR_033514, exon 3 of 3) 3' UTR (NR_033514, exon 3 of 3) 9297 NR_033514 69548 Mm.269712 NR_033514 2310015A10Rik 5330419I17Rik RIKEN cDNA 2310015A10 gene 0.000000 0.585987 -5.515039 chr2-898 chr2 167401934 167402090 + 25.4 NA Intergenic Intergenic 19600 NR_015500 329562 Mm.123101 NM_177851 A530013C23Rik - RIKEN cDNA A530013C23 gene 0.025641 0.585987 -1.728499 chr8-618 chr8 129723633 129723789 + 25.4 NA Intergenic Intergenic 108209 NM_024214 67952 Mm.380026 NM_024214 ENSMUSG00000058779 Tomm20 1810060K07Rik|BB284719|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 translocase of outer mitochondrial membrane 20 homolog (yeast) 0.006410 0.439490 3.325068 chr3-532 chr3 80645822 80645978 + 25.4 NA Intergenic Intergenic 242818 NM_013540 14800 Mm.220224 NM_001039195 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2 glutamate receptor, ionotropic, AMPA2 (alpha 2) 0.000000 0.331210 -1.290818 chr11-853 chr11 100558327 100558483 + 25.4 NA intron (NM_001081194, intron 15 of 16) intron (NM_001081194, intron 15 of 16) -4185 NM_024456 19345 Mm.29829 NM_024456 ENSMUSG00000019173 Rab5c AI326010|Rabl RAB5C, member RAS oncogene family 0.000000 0.394904 -4.953780 chr8-570 chr8 122015174 122015330 + 25.4 NA intron (NM_019707, intron 7 of 13) intron (NM_019707, intron 7 of 13) -215262 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 0.006410 0.439490 -2.294811 chr6-552 chr6 83837196 83837352 + 25.4 NA Intergenic B3|SINE|B2 -39875 NM_146169 232164 Mm.404420 NM_146169 ENSMUSG00000045896 Paip2b MGC27648|MGC49717 poly(A) binding protein interacting protein 2B 0.038462 0.464968 4.998736 chr10-546 chr10 92664271 92664427 + 25.4 NA intron (NM_146239, intron 11 of 16) intron (NM_146239, intron 11 of 16) 71766 NR_035452 100316689 NR_035452 Mir1931 mmu-mir-1931 microRNA mir-1931 0.032051 0.464968 -1.019086 chr14-244 chr14 33502393 33502549 + 25.4 NA promoter-TSS (NM_001004436) promoter-TSS (NM_001004436) -548 NM_001004436 218914 Mm.27957 NM_001004436 ENSMUSG00000041408 Wapal 2410073G16|A530089A20Rik|BC037674|FOE|KIAA0261|mKIAA0261|mWAPL wings apart-like homolog (Drosophila) 0.064103 0.592357 -9.562882 chr4-811 chr4 135325463 135325619 + 25.4 NA promoter-TSS (NM_025919) promoter-TSS (NM_025919) -94 NM_025919 67025 Mm.276856 NM_025919 ENSMUSG00000059291 Rpl11 2010203J19Rik ribosomal protein L11 0.044872 0.579618 -6.887423 chr10-582 chr10 121307203 121307359 + 25.4 NA intron (NM_001081037, intron 3 of 21) intron (NM_001081037, intron 3 of 21) 142972 NM_001081037 117600 Mm.288698 NM_001081037 ENSMUSG00000020121 Srgap1 4930572H05Rik|Arhgap13 SLIT-ROBO Rho GTPase activating protein 1 0.006410 0.490446 0.483846 chr5-805 chr5 51833489 51833645 + 25.4 NA intron (NM_008904, intron 2 of 12) intron (NM_008904, intron 2 of 12) 8602 NR_027710 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|PGC-1|PGC-1v|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 0.012821 0.477707 -1.904085 chr5-742 chr5 8062104 8062260 + 25.4 NA promoter-TSS (NM_001080974) promoter-TSS (NM_001080974) -365 NM_001080974 109552 Mm.96211 NM_001080974 ENSMUSG00000003161 Sri 2210417O06Rik|2900070H08Rik|Sor sorcin 0.025641 0.420382 1.567471 chr12-601 chr12 70531737 70531893 + 25.4 NA intron (NM_001135559, intron 12 of 22) intron (NM_001135559, intron 12 of 22) -30182 NM_001033236 207965 Mm.102487 NM_001033236 ENSMUSG00000049882 Gm71 - predicted gene 71 0.006410 0.445860 -4.771395 chr8-579 chr8 123254884 123255040 + 25.4 NA Intergenic Intergenic -119880 NM_198671 382034 Mm.334856 NM_001145896 ENSMUSG00000031822 Gse1 2210013I18Rik|MGC58013|mKIAA0182 genetic suppressor element 1 0.012821 0.630573 -8.237467 chr5-1033 chr5 148863120 148863276 + 25.4 NA promoter-TSS (NM_011908) promoter-TSS (NM_011908) -61 NM_011908 24109 Mm.21846 NM_011908 ENSMUSG00000001687 Ubl3 AW108023|HCG ubiquitin-like 3 0.083333 0.649682 -6.609120 chr5-1034 chr5 148991025 148991181 + 25.4 NA Intergenic LTR48B|LTR|ERV1 -61085 NR_028285 70138 Mm.417834 XM_001473363 2210417A02Rik AV081004 RIKEN cDNA 2210417A02 gene 0.006410 0.439490 -0.095616 chr12-635 chr12 79969542 79969698 + 25.4 NA intron (NM_181073, intron 4 of 28) intron (NM_181073, intron 4 of 28) 21618 NM_181073 211945 Mm.478321 XM_126961 ENSMUSG00000060716 Plekhh1 AV308913|C77772|D630024D12Rik|mKIAA1200 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 0.006410 0.503185 4.832441 chr12-646 chr12 82102679 82102835 + 25.4 NA intron (NM_001146217, intron 11 of 12) intron (NM_001146217, intron 11 of 12) 149271 NM_001167920 110893 Mm.443748 NM_001167920 ENSMUSG00000053302 Slc8a3 AW742262|MGC90626|Ncx3 solute carrier family 8 (sodium/calcium exchanger), member 3 0.038462 0.585987 -7.081306 chr17-543 chr17 72823185 72823341 + 25.4 NA promoter-TSS (NM_029999) promoter-TSS (NM_029999) -41 NM_029999 77889 Mm.154109 XM_001480246 ENSMUSG00000024063 Lbh 1810009F10Rik|6720416L16Rik limb-bud and heart 0.076923 0.598726 -7.634392 chr5-748 chr5 15745761 15745917 + 25.4 NA intron (NM_001110844, intron 6 of 38) intron (NM_001110844, intron 6 of 38) 299325 NM_001110846 12293 Mm.159842 NM_001110843 ENSMUSG00000040118 Cacna2d1 Cacna2|Cchl2a|MGC141430 calcium channel, voltage-dependent, alpha2/delta subunit 1 0.012821 0.477707 -2.738540 chr1-928 chr1 74787876 74788032 + 25.4 NA promoter-TSS (NM_009872) promoter-TSS (NM_009872) -281 NM_009872 12570 Mm.434459 NM_009872 ENSMUSG00000090071 Cdk5r2 B230310J22Rik|p39 cyclin-dependent kinase 5, regulatory subunit 2 (p39) 0.012821 0.496815 -6.164959 chr4-652 chr4 47131193 47131349 + 25.4 NA intron (NM_172693, intron 3 of 9) intron (NM_172693, intron 3 of 9) 18219 NM_172693 230145 Mm.132246 NM_172693 ENSMUSG00000039774 Galnt12 9130206E10|A630062B03Rik UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 0.006410 0.522293 -2.926709 chr15-337 chr15 32723486 32723642 + 25.4 NA Intergenic CpG -141747 NM_008304 15529 Mm.234266 NM_008304 ENSMUSG00000022261 Sdc2 4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2 syndecan 2 0.070513 0.605096 -1.565160 chr2-869 chr2 154497142 154497298 + 25.4 NA intron (NM_001139513, intron 1 of 8) intron (NM_001139513, intron 1 of 8) 14670 NM_001139511 19383 Mm.475494 NM_001139511 ENSMUSG00000027593 Raly AI663842|Merc hnRNP-associated with lethal yellow 0.000000 0.356688 2.184784 chr2-854 chr2 143307062 143307218 + 25.4 NA intron (NM_008792, intron 2 of 11) intron (NM_008792, intron 2 of 11) 69567 NM_008792 18549 Mm.447466 NM_008792 ENSMUSG00000027419 Pcsk2 6330411F23Rik|AI839700|Nec-2|Nec2|PC2|Phpp-2|SPC2 proprotein convertase subtilisin/kexin type 2 0.006410 0.490446 -3.700038 chr4-694 chr4 82809081 82809237 + 25.4 NA Intergenic B4A|SINE|B4 -13739 NM_027238 69863 Mm.5540 NM_027238 ENSMUSG00000038172 Ttc39b 1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585 tetratricopeptide repeat domain 39B 0.000000 0.535032 -4.981359 chr13-406 chr13 48443679 48443835 + 25.4 NA Intergenic Intergenic 81590 NM_001164575 67911 Mm.251375 NM_001164575 ENSMUSG00000050954 Zfp169 1700025J14Rik|4930429A13Rik|BE688704 zinc finger protein 169 0.012821 0.439490 2.396020 chr8-598 chr8 126594830 126594986 + 25.4 NA Intergenic Intergenic 54890 NM_133955 69581 Mm.168257 NM_133955 ENSMUSG00000039960 Rhou 2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K ras homolog gene family, member U 0.006410 0.509554 1.697204 chr8-514 chr8 60471342 60471498 + 25.4 NA intron (NM_001167981, intron 2 of 11) intron (NM_001167981, intron 2 of 11) 67436 NM_008252 97165 Mm.470487 NM_008252 ENSMUSG00000054717 Hmgb2 C80539|HMG-2|Hmg2|MGC103184 high mobility group box 2 0.025641 0.445860 -5.836743 chr10-447 chr10 16684765 16684921 + 25.4 NA Intergenic Intergenic -727800 NM_010828 17684 Mm.480574 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 0.012821 0.420382 -1.562204 chr5-918 chr5 114925959 114926115 + 25.4 NA Intergenic Intergenic -6617 NM_022017 63873 Mm.266450 NM_022017 ENSMUSG00000014158 Trpv4 0610033B08Rik|MGC150050|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC transient receptor potential cation channel, subfamily V, member 4 0.025641 0.617834 -4.177282 chr5-775 chr5 33335746 33335902 + 25.4 NA 5' UTR (NM_011738, exon 1 of 2) 5' UTR (NM_011738, exon 1 of 2) 152 NM_011738 22629 Mm.332314 NM_011738 ENSMUSG00000018965 Ywhah - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 0.179487 0.783440 -9.876928 chr8-473 chr8 26906509 26906665 + 25.4 NA Intergenic Intergenic -77729 NM_001079909 14182 Mm.265716 NM_001079908 ENSMUSG00000031565 Fgfr1 AW208770|FLG|Fgfr-1|Flt-2 fibroblast growth factor receptor 1 0.012821 0.471338 -1.290818 chr16-403 chr16 97180965 97181121 + 25.4 NA intron (NM_031174, intron 1 of 32) intron (NM_031174, intron 1 of 32) 94602 NM_031174 13508 Mm.328737 NM_031174 ENSMUSG00000050272 Dscam 4932410A21Rik Down syndrome cell adhesion molecule 0.006410 0.433121 0.995068 chr7-509 chr7 109777309 109777465 + 25.4 NA promoter-TSS (NM_153525) promoter-TSS (NM_153525) 20 NM_153525 233724 Mm.43212 NM_153525 ENSMUSG00000047554 Tmem41b 1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e|MGC38847 transmembrane protein 41B 0.076923 0.592357 2.704128 chr5-1005 chr5 140641704 140641860 + 25.4 NA promoter-TSS (NM_172277) promoter-TSS (NM_172277) -61 NM_172277 231834 Mm.27098 NM_172277 ENSMUSG00000029560 Snx8 B130023O14Rik sorting nexin 8 0.108974 0.732484 -6.793802 chr8-612 chr8 128928588 128928744 + 25.4 NA Intergenic Intergenic 47475 NM_008430 16525 Mm.10800 NM_008430 ENSMUSG00000033998 Kcnk1 AI788889|TWIK-1 potassium channel, subfamily K, member 1 0.006410 0.496815 -6.929636 chr18-339 chr18 54082582 54082738 + 25.4 NA Intergenic Intergenic 95179 NM_152809 70425 Mm.368668 NM_152809 ENSMUSG00000073563 Csnk1g3 3300002K07Rik|C330049O21Rik casein kinase 1, gamma 3 0.006410 0.375796 -2.813704 chr12-573 chr12 47990183 47990339 + 25.4 NA Intergenic Intergenic -295529 NM_021361 664883 Mm.462575 XM_001472258 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 0.006410 0.363057 -0.493216 chr12-710 chr12 108310492 108310648 + 25.4 NA Intergenic Intergenic 140651 NM_001079883 58208 Mm.392694 NM_001079883 ENSMUSG00000048251 Bcl11b 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 B-cell leukemia/lymphoma 11B 0.012821 0.337580 -1.876497 chr2-670 chr2 18134499 18134655 + 25.4 NA 3' UTR (NM_007869, exon 12 of 12) 3' UTR (NM_007869, exon 12 of 12) 161553 NM_010804 17354 Mm.209175 NM_010804 ENSMUSG00000026743 Mllt10 Af10|B130021D15Rik|D630001B22Rik|KIAA4140|mKIAA4140 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 0.012821 0.503185 0.114872 chr1-1116 chr1 174346700 174346856 + 25.4 NA Intergenic L2|LINE|L2 9858 NM_178598 21346 Mm.271711 NM_178598 ENSMUSG00000026547 Tagln2 2700094C18Rik|KIAA0120|SM22beta|Sm22B|Sm22a transgelin 2 0.006410 0.477707 -4.816860 chr5-889 chr5 107442657 107442813 + 25.4 NA intron (NM_011578, intron 3 of 16) intron (NM_011578, intron 3 of 16) 87162 NM_011578 21814 Mm.200775 NM_011578 ENSMUSG00000029287 Tgfbr3 1110036H20Rik|AU015626|AW215636|TBRIII transforming growth factor, beta receptor III 0.006410 0.464968 -3.151979 chr6-585 chr6 92374000 92374156 + 25.4 NA intron (NM_001134461, intron 7 of 7) intron (NM_001134461, intron 7 of 7) 72818 NM_001134460 243548 Mm.248820 NM_001081146 ENSMUSG00000030020 Prickle2 6230400G14Rik|6720451F06Rik|mpk2 prickle homolog 2 (Drosophila) 0.038462 0.522293 -1.309376 chr15-416 chr15 88713203 88713359 + 25.4 NA Intergenic Intergenic 23322 NM_145478 223775 Mm.474725 NM_145478 ENSMUSG00000035828 Pim3 BC026639|Kid1|MGC27707|MGC37517 proviral integration site 3 0.012821 0.566879 -2.927620 chr4-718 chr4 95010298 95010454 + 25.4 NA Intergenic Intergenic -39148 NM_001113412 75578 Mm.276098 NM_001113412 ENSMUSG00000028573 Fggy 2310009E04Rik|MGC118640 FGGY carbohydrate kinase domain containing 0.012821 0.375796 -4.130243 chr17-441 chr17 27107821 27107977 + 25.4 NA Intergenic Intergenic 122994 NM_001013385 268934 Mm.358940 NM_001013385 ENSMUSG00000063239 Grm4 Gprc1d|mGluR4 glutamate receptor, metabotropic 4 0.006410 0.509554 -1.068037 chr2-871 chr2 155888378 155888534 + 25.4 NA intron (NM_172674, intron 1 of 17) intron (NM_172674, intron 1 of 17) 369 NM_172674 228829 Mm.427078 NM_172674 ENSMUSG00000038116 Phf20 6820402O20Rik PHD finger protein 20 0.115385 0.757962 -3.839955 chr11-766 chr11 72744822 72744978 + 25.4 NA Intergenic Intergenic -32463 NM_016745 53313 Mm.6306 NM_001163336 ENSMUSG00000020788 Atp2a3 SERCA3b|Serca3 ATPase, Ca++ transporting, ubiquitous 0.006410 0.522293 0.274662 chr4-687 chr4 81433762 81433918 + 25.4 NA Intergenic Intergenic -519804 NM_010820 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 multiple PDZ domain protein 0.006410 0.343949 9.273689 chr8-494 chr8 42863556 42863712 + 25.4 NA intron (NM_019734, intron 1 of 13) intron (NM_019734, intron 1 of 13) 9880 NM_019734 11886 Mm.22547 NM_019734 ENSMUSG00000031591 Asah1 2310081N20Rik|AC|AL022942|AU044555|Asah N-acylsphingosine amidohydrolase 1 0.025641 0.464968 4.386478 chr7-601 chr7 141617517 141617673 + 25.4 NA intron (NM_010844, intron 30 of 48) intron (NM_010844, intron 30 of 48) 17085 NM_010844 17833 Mm.334332 NM_010844 ENSMUSG00000037974 Muc5ac 2210005L13Rik|MGM mucin 5, subtypes A and C, tracheobronchial/gastric 0.000000 0.471338 -5.948390 chr5-1023 chr5 145250580 145250736 + 25.4 NA exon (NM_001013774, exon 8 of 13) exon (NM_001013774, exon 8 of 13) 12505 NM_001013774 381686 Mm.332837 NM_001013774 ENSMUSG00000038770 Kpna7 AW146299|Gm1055 karyopherin alpha 7 (importin alpha 8) 0.038462 0.541401 -6.314010 chr6-575 chr6 90584688 90584844 + 25.4 NA promoter-TSS (NM_001037493) promoter-TSS (NM_001037493) 47 NM_001037493 71699 Mm.272633 NM_001037493 ENSMUSG00000030089 Slc41a3 1010001P06Rik|AI480742|SLC41A1-L2 solute carrier family 41, member 3 0.019231 0.585987 -2.930144 chr5-973 chr5 131885087 131885243 + 25.4 NA intron (NM_177047, intron 5 of 18) intron (NM_177047, intron 5 of 18) -292940 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik Williams-Beuren syndrome chromosome region 17 homolog (human) 0.012821 0.630573 -0.570530 chr9-556 chr9 21005945 21006101 + 25.4 NA Intergenic Intergenic -7178 NM_053190 94226 Mm.190619 NM_053190 ENSMUSG00000045087 S1pr5 Edg8|S1P5|lpB4 sphingosine-1-phosphate receptor 5 0.000000 0.490446 -9.216533 chr10-578 chr10 119100293 119100449 + 25.4 NA intron (NM_133442, intron 1 of 21) intron (NM_133442, intron 1 of 21) -122200 NM_130891 74053 Mm.196692 NM_028736 ENSMUSG00000034813 Grip1 4931400F03Rik|KIAA4223|eb|mKIAA4223 glutamate receptor interacting protein 1 0.006410 0.477707 -5.008650 chr5-899 chr5 110510175 110510193 + 25.4 NA promoter-TSS (NM_028273) promoter-TSS (NM_028273) 17 NM_001163538 72542 Mm.61682 NM_001163538 ENSMUSG00000029500 Pgam5 2610528A17Rik phosphoglycerate mutase family member 5 0.055556 0.578947 -14.276346 chr5-825 chr5 66302381 66302537 + 25.4 NA intron (NM_139065, intron 5 of 6) intron (NM_139065, intron 5 of 6) -19039 NR_027961 231253 Mm.478504 NR_027961 9130230L23Rik - RIKEN cDNA 9130230L23 gene 0.019231 0.401274 -5.309981 chr13-423 chr13 56251792 56251948 + 25.4 NA Intergenic Intergenic 9915 NM_010896 18014 Mm.266665 NM_010896 ENSMUSG00000048904 Neurog1 AKA|Math4C|Neurod3|bHLHa6|ngn1 neurogenin 1 0.006410 0.477707 -2.627436 chr2-924 chr2 179772911 179773067 + 25.4 NA intron (NM_009867, intron 5 of 15) intron (NM_009867, intron 5 of 15) 133065 NM_001081092 228980 Mm.235542 NM_001081092 ENSMUSG00000039117 Taf4a 135kDa|AI450312|TAFII130|TAFII135|Taf2c1 TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor 0.025641 0.528662 -5.374935 chr1-1017 chr1 127976825 127976981 + 25.4 NA intron (NM_176957, intron 7 of 12) intron (NM_176957, intron 7 of 12) -237143 NM_145100 72585 Mm.479965 NM_145100 ENSMUSG00000026344 Lypd1 2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1 Ly6/Plaur domain containing 1 0.000000 0.439490 -4.261071 chr7-585 chr7 134902424 134902580 + 25.4 NA intron (NM_001033420, intron 29 of 51) intron (NM_001033420, intron 29 of 51) -125729 NM_001143802 627214 Mm.450655 XM_001480332 Fam196a B830028B13Rik|MGC189982|MGC189985 family with sequence similarity 196, member A 0.019231 0.541401 -9.460141 chr5-798 chr5 44675176 44675332 + 25.4 NA Intergenic Intergenic -160400 NM_173764 231225 Mm.30688 NM_173764 ENSMUSG00000046985 Tapt1 4932414K18Rik transmembrane anterior posterior transformation 1 0.012821 0.401274 -5.498192 chr12-551 chr12 35742684 35742840 + 25.4 NA Intergenic Intergenic 37207 NR_030449 751520 NR_030449 Mir680-3 Mirn680-3 microRNA 680-3 0.006410 0.445860 0.447030 chr5-834 chr5 73450479 73450635 + 25.4 NA intron (NM_028194, intron 3 of 62) intron (NM_028194, intron 3 of 62) -2983 NM_177136 72313 Mm.480322 NM_028194 ENSMUSG00000070733 Fryl 2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|AI930088|mKIAA0826 furry homolog-like (Drosophila) 0.006410 0.484076 -5.740915 chr10-564 chr10 98365664 98365820 + 25.4 NA intron (NM_026482, intron 1 of 20) intron (NM_026482, intron 1 of 20) 20903 NM_026482 67972 Mm.471912 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 ATPase, Ca++ transporting, plasma membrane 1 0.019231 0.445860 -5.257452 chr2-756 chr2 68306762 68306918 + 25.4 NA Intergenic Intergenic -34020 NM_016866 53416 Mm.198414 NM_016866 ENSMUSG00000027030 Stk39 AW227544|AW556857|DCHT|SPAK serine/threonine kinase 39, STE20/SPS1 homolog (yeast) 0.012821 0.337580 -9.266938 chr12-568 chr12 42831333 42831489 + 25.4 NA Intergenic Intergenic -835237 NM_010733 16981 Mm.39913 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal 0.012821 0.401274 -5.808033 chr5-1020 chr5 144618657 144618813 + 25.4 NA Intergenic PB1D10|SINE|Alu -7096 NM_025833 66898 Mm.18814 NM_025833 ENSMUSG00000038859 Baiap2l1 1300006M19Rik|AI585895|IRTKS BAI1-associated protein 2-like 1 0.012821 0.471338 -1.672494 chr17-429 chr17 24206620 24206776 + 25.4 NA promoter-TSS (NM_019988) promoter-TSS (NM_019988) -20 NM_019988 56716 Mm.289516 NM_019988 ENSMUSG00000024142 Mlst8 0610033N12Rik|AA409454|AI505104|AI851821|Gbl MTOR associated protein, LST8 homolog (S. cerevisiae) 0.083333 0.598726 -6.840905 chr17-424 chr17 23728099 23728255 + 25.4 NA Intergenic Intergenic -2455 NM_133731 70835 Mm.157351 NM_133731 ENSMUSG00000045027 Prss22 4733401N09Rik|BSSP-4|SP001LA protease, serine, 22 0.006410 0.592357 -4.769458 chr16-335 chr16 32166847 32167003 + 25.4 NA promoter-TSS (NM_026898) promoter-TSS (NM_026898) -48 NM_001185162 68980 Mm.452641 NM_001185162 ENSMUSG00000022787 Wdr53 1500002B03Rik|AI848860 WD repeat domain 53 0.102564 0.662420 -2.789932 chr17-387 chr17 4153327 4153483 + 25.4 NA Intergenic Intergenic -500662 NM_198958 224480 Mm.328756 NM_198958 ENSMUSG00000023802 Nox3 GP91-3|MGC124289|het|nmf250 NADPH oxidase 3 0.019231 0.477707 -1.679282 chr1-966 chr1 82739064 82739220 + 25.4 NA intron (NM_010472, intron 2 of 12) intron (NM_010472, intron 2 of 12) 20636 NM_010472 15463 Mm.433409 NM_010472 ENSMUSG00000026159 Agfg1 AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip ArfGAP with FG repeats 1 0.019231 0.382166 1.064636 chr14-227 chr14 24571813 24571969 + 25.4 NA intron (NM_001101433, intron 2 of 3) intron (NM_001101433, intron 2 of 3) 30149 NM_001101433 71918 Mm.41904 XM_908180 Zcchc24 2310047A01Rik zinc finger, CCHC domain containing 24 0.012821 0.585987 1.439429 chr6-591 chr6 94513326 94513482 + 25.4 NA intron (NM_026255, intron 5 of 9) intron (NM_026255, intron 5 of 9) 47628 NM_026255 67582 Mm.280725 NM_026255 ENSMUSG00000045100 Slc25a26 4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26 0.019231 0.350318 -1.479579 chr15-391 chr15 76291008 76291164 + 25.4 NA intron (NM_013481, intron 3 of 15) intron (NM_013481, intron 3 of 15) 6394 NM_198885 20289 Mm.322821 NM_198885 ENSMUSG00000034161 Scx BB114693|Bhlha41|Scl scleraxis 0.064103 0.643312 -5.120075 chr8-523 chr8 72123818 72123974 + 25.4 NA Intergenic Intergenic -14138 NM_001013379 234358 Mm.334577 NM_001013379 ENSMUSG00000059897 D10627 - cDNA sequence D10627 0.019231 0.496815 -3.612518 chr17-512 chr17 47359640 47359796 + 25.4 NA intron (NM_001110824, intron 2 of 16) intron (NM_001110824, intron 2 of 16) 28105 NM_028767 74123 Mm.240062 NM_001110824 ENSMUSG00000023991 Foxp4 1200010K03Rik|2310007G05Rik|mFKHLA forkhead box P4 0.006410 0.439490 -4.458825 chr19-203 chr19 9093783 9093939 + 25.4 NA intron (NM_001039959, intron 4 of 5) intron (NM_001039959, intron 4 of 5) 37533 NM_001039959 66395 Mm.392302 NM_001039959 ENSMUSG00000069833 Ahnak 1110004P15Rik|2310047C17Rik|AA589382|AV091586|DY6 AHNAK nucleoprotein (desmoyokin) 0.000000 0.458599 -6.442149 chr8-588 chr8 124808176 124808332 + 25.4 NA intron (NM_007608, intron 5 of 6) intron (NM_007608, intron 5 of 6) 14332 NM_001033485 407789 Mm.436576 NM_001033485 BC048644 - cDNA sequence BC048644 0.019231 0.573248 -7.363707 chr1-1010 chr1 121118231 121118387 + 25.4 NA Intergenic ID_B1|SINE|B4 131485 NM_008381 16324 Mm.3092 NM_008381 ENSMUSG00000037035 Inhbb - inhibin beta-B 0.019231 0.503185 -0.908613 chr3-524 chr3 70076020 70076176 + 25.4 NA Intergenic Lx7|LINE|L1 -19443 NM_001018031 229389 Mm.331071 NM_001018031 ENSMUSG00000027788 Gm414 Otol1 predicted gene 414 0.000000 0.369427 -3.979162 chr11-875 chr11 106736680 106736836 + 25.4 NA promoter-TSS (NM_025481) promoter-TSS (NM_025481) 47 NM_025481 66313 Mm.340955 NM_025481 ENSMUSG00000018363 Smurf2 2810411E22Rik|AI558114|AI649275 SMAD specific E3 ubiquitin protein ligase 2 0.141026 0.764331 -4.791019 chr3-656 chr3 154659888 154660044 + 25.4 NA intron (NM_175176, intron 3 of 6) intron (NM_175176, intron 3 of 6) 13541 NM_175176 209601 Mm.478925 XM_001481326 4922501L14Rik 1700013E18Rik|5031409G23Rik|AI596448|Gm133|MGC169860|MGC175727 RIKEN cDNA 4922501L14 gene 0.006410 0.452229 -8.371677 chr4-676 chr4 64147673 64147829 + 25.4 NA Intergenic Lx8|LINE|L1 -462783 NM_021362 18491 Mm.317854 NM_021362 ENSMUSG00000028370 Pappa 8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A pregnancy-associated plasma protein A 0.006410 0.382166 -1.683897 chr15-328 chr15 30631328 30631484 + 25.4 NA intron (NM_008729, intron 9 of 22) intron (NM_008729, intron 9 of 22) 514225 NM_008729 18163 Mm.321648 NM_008729 ENSMUSG00000022240 Ctnnd2 Catnd2|Nprap|neurojugin catenin (cadherin associated protein), delta 2 0.000000 0.433121 -7.108496 chr7-487 chr7 96162301 96162457 + 25.4 NA intron (NM_011858, intron 1 of 32) intron (NM_011858, intron 1 of 32) 37764 NR_030489 735284 NR_030489 Mir708 Mirn708|mmu-mir-708 microRNA 708 0.006410 0.433121 -5.573932 chr8-532 chr8 73794791 73794947 + 25.4 NA Intergenic CpG 7610 NM_026964 234388 Mm.295791 NM_026964 ENSMUSG00000007721 Ccdc124 1810023B24Rik coiled-coil domain containing 124 0.070513 0.605096 2.252892 chr18-343 chr18 55823301 55823457 + 25.4 NA Intergenic Intergenic -707830 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|MGC116601|Znf608 zinc finger protein 608 0.025641 0.420382 -5.520739 chr2-885 chr2 164460702 164460858 + 25.4 NA promoter-TSS (NM_026785) promoter-TSS (NM_026785) -353 NM_026785 68612 Mm.89830 NM_026785 ENSMUSG00000001403 Ube2c 1110015A16Rik|D2Ertd695e ubiquitin-conjugating enzyme E2C 0.057692 0.560510 -3.578382 chr15-340 chr15 35315708 35315864 + 25.4 NA promoter-TSS (NM_177151) promoter-TSS (NM_177151) -348 NM_177151 666173 Mm.309250 XM_981774 ENSMUSG00000037646 Vps13b 1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|MGC189855|mKIAA0532|mKIAA5032 vacuolar protein sorting 13B (yeast) 0.064103 0.554140 3.262038 chr4-862 chr4 150689105 150689261 + 25.4 NA intron (NM_001081557, intron 1 of 23) intron (NM_001081557, intron 1 of 23) 16374 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.038462 0.535032 -7.180555 chr2-727 chr2 50266357 50266513 + 25.4 NA Intergenic Intergenic -147749 NM_133839 109129 Mm.29214 NM_133839 ENSMUSG00000026766 Mmadhc 2010311D03Rik|AI314967 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 0.000000 0.535032 2.979602 chrX-121 chrX 146296340 146296496 + 25.4 NA Intergenic L2|LINE|L2 61591 NM_001168600 237107 Mm.45987 NM_001168600 ENSMUSG00000025266 Gnl3l BC020354 guanine nucleotide binding protein-like 3 (nucleolar)-like 0.012821 0.496815 -3.374737 chr4-628 chr4 35543205 35543361 + 25.4 NA Intergenic Intergenic -128516 NM_001081343 73205 Mm.331544 NM_001081343 ENSMUSG00000028300 3110043O21Rik AI840585 RIKEN cDNA 3110043O21 gene 0.012821 0.363057 -1.668935 chr5-761 chr5 28070287 28070443 + 25.4 NA Intergenic Intergenic 51761 NM_018878 55982 Mm.409895 NM_018878 ENSMUSG00000002221 Paxip1 D5Ertd149e|PTIP PAX interacting (with transcription-activation domain) protein 1 0.012821 0.541401 -5.576666 chr6-469 chr6 28767173 28767329 + 25.4 NA intron (NM_019776, intron 16 of 23) intron (NM_019776, intron 16 of 23) 14506 NM_138682 192198 Mm.443660 NM_138682 ENSMUSG00000049939 Lrrc4 MBAG1|NGL-2|NLG-2|Nag14 leucine rich repeat containing 4 0.032051 0.598726 -4.846887 chr2-902 chr2 167921454 167921610 + 25.4 NA promoter-TSS (NM_010072) promoter-TSS (NM_010072) 52 NM_010072 13480 Mm.422657 NM_010072 ENSMUSG00000051149 Dpm1 AI118379|AI194292 dolichol-phosphate (beta-D) mannosyltransferase 1 0.128205 0.681529 -3.471313 chr5-753 chr5 22694432 22694588 + 25.4 NA intron (NM_029990, intron 2 of 2) intron (NM_029990, intron 2 of 2) -251742 NM_026984 69188 Mm.403814 XM_893956 Mll5 1810033J14Rik|9530077A04Rik|D230038D11Rik|FLJ10078|Kmt2E myeloid/lymphoid or mixed-lineage leukemia 5 0.025641 0.477707 -4.971229 chr12-591 chr12 58934193 58934349 + 25.4 NA Intergenic HAL1|LINE|L1 -195544 NM_009216 20605 Mm.278336 NM_009216 ENSMUSG00000035431 Sstr1 Smstr-1|Smstr1|sst1 somatostatin receptor 1 0.000000 0.229299 -4.107404 chr5-838 chr5 75818191 75818347 + 25.4 NA Intergenic Intergenic -38414 NM_001122733 16590 Mm.247073 NM_001122733 ENSMUSG00000005672 Kit Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT kit oncogene 0.006410 0.375796 -2.523620 chr11-797 chr11 83261134 83261290 + 25.4 NA exon (NM_080453, exon 5 of 8) exon (NM_080453, exon 5 of 8) 7324 NM_025492 66330 Mm.44800 NM_025492 ENSMUSG00000035085 1700020L24Rik - RIKEN cDNA 1700020L24 gene 0.115385 0.668790 3.135167 chr15-380 chr15 70322138 70322294 + 25.4 NA Intergenic B3|SINE|B2 1235291 NM_177819 70363 Mm.126450 NM_027401 Fam135b 1700010C24Rik|A830008O07Rik|MGC159348|MGC159350 family with sequence similarity 135, member B 0.006410 0.394904 -5.418206 chr11-826 chr11 93374419 93374575 + 25.4 NA intron (NM_028296, intron 4 of 8) intron (NM_028296, intron 4 of 8) 327359 NM_001013375 217109 Mm.379350 NM_001013375 ENSMUSG00000054079 Utp18 6230425C22Rik|6430513M13|MGC141453|MGC141454|Wdr50 UTP18, small subunit (SSU) processome component, homolog (yeast) 0.006410 0.433121 -1.408477 chr9-706 chr9 94469350 94469506 + 25.4 NA Intergenic PB1D10|SINE|Alu -9815 NM_177909 331004 Mm.326125 NM_177909 ENSMUSG00000031129 Slc9a9 5730527A11Rik|9930105B05|AI854429|Nhe9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 0.012821 0.439490 -6.358335 chr6-461 chr6 21951447 21951603 + 25.4 NA intron (NM_001081351, intron 1 of 21) intron (NM_001081351, intron 1 of 21) 15615 NM_001081351 214642 Mm.221404 NM_001081351 ENSMUSG00000062980 A430107O13Rik 6720481P07|AI552584 RIKEN cDNA A430107O13 gene 0.012821 0.566879 -5.708763 chr2-714 chr2 33175422 33175578 + 25.4 NA intron (NM_175211, intron 1 of 19) intron (NM_175211, intron 1 of 19) 17987 NM_175211 241308 Mm.274249 NM_175211 ENSMUSG00000038831 Ralgps1 5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351 Ral GEF with PH domain and SH3 binding motif 1 0.025641 0.547771 2.867080 chr11-734 chr11 60354166 60354322 + 25.4 NA 5' UTR (NM_172943, exon 1 of 4) 5' UTR (NM_172943, exon 1 of 4) 367 NM_172943 268420 Mm.262056 NM_172943 ENSMUSG00000042650 Alkbh5 AW050020|AW215868|Abh5|E130207K11|Ofoxd alkB, alkylation repair homolog 5 (E. coli) 0.153846 0.713376 3.627652 chr12-680 chr12 94261079 94261235 + 25.4 NA Intergenic Intergenic -1826899 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 KIAA0405 fibronectin leucine rich transmembrane protein 2 0.006410 0.356688 4.066006 chr6-669 chr6 148309640 148309796 + 25.4 NA intron (NM_198967, intron 5 of 19) intron (NM_198967, intron 5 of 19) -2107 NR_003634 66184 Mm.391542 NR_003634 Rps4y2 1110033J19Rik|AA407494|MGC59460 ribosomal protein S4, Y-linked 2 0.012821 0.445860 -0.273258 chr3-595 chr3 118458411 118458567 + 25.4 NA Intergenic Intergenic 32629 NR_029551 387155 NR_029551 Mir137 Mirn137|mmu-mir-137 microRNA 137 0.006410 0.452229 -4.496294 chr6-513 chr6 53098709 53098865 + 25.4 NA Intergenic Intergenic -100585 NM_173406 231986 Mm.386865 NM_001168277 ENSMUSG00000063568 Jazf1 AI591476|C820002C15|Jaz1|Tip27 JAZF zinc finger 1 0.019231 0.509554 -2.995517 chr2-822 chr2 117567995 117568151 + 25.4 NA Intergenic Lx9|LINE|L1 -235289 NM_011580 21825 Mm.4159 NM_011580 ENSMUSG00000040152 Thbs1 TSP-1|TSP1|Thbs-1|tbsp1 thrombospondin 1 0.006410 0.420382 -4.925023 chr10-555 chr10 94684884 94685040 + 25.4 NA intron (NM_009950, intron 2 of 2) intron (NM_009950, intron 2 of 2) 68823 NM_009950 12905 Mm.473739 NM_009950 ENSMUSG00000045867 Cradd RAIDD CASP2 and RIPK1 domain containing adaptor with death domain 0.006410 0.343949 4.038418 chr11-858 chr11 101064801 101064957 + 25.4 NA TTS (NM_019444) TTS (NM_019444) 2456 NM_019444 54409 Mm.298256 NM_019444 ENSMUSG00000001240 Ramp2 - receptor (calcitonin) activity modifying protein 2 0.012821 0.464968 -2.176225 chr17-520 chr17 55828649 55828805 + 25.4 NA exon (NM_172624, exon 14 of 21) exon (NM_172624, exon 14 of 21) -11098 NM_080837 28106 Mm.294870 NM_080837 ENSMUSG00000019579 D17Wsu104e Il25|Ly6elg DNA segment, Chr 17, Wayne State University 104, expressed 0.051282 0.554140 -1.179254 chr10-592 chr10 126912378 126912534 + 25.4 NA TTS (NM_177707) TTS (NM_177707) -5431 NM_001098789 407790 Mm.336856 XM_001004705 ENSMUSG00000040280 Ndufa4l2 BC064011|MGC117746 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 0.044872 0.535032 -10.062264 chr3-638 chr3 141657213 141657369 + 25.4 NA intron (NM_009472, intron 3 of 15) intron (NM_009472, intron 3 of 15) 254341 NM_009472 22253 Mm.24430 NM_009472 ENSMUSG00000059921 Unc5c 6030473H24|AI047720|B130051O18Rik|Unc5h3|rcm unc-5 homolog C (C. elegans) 0.006410 0.356688 -1.651486 chr12-599 chr12 68190972 68191128 + 25.4 NA Intergenic L2|LINE|L2 -49896 NM_001193266 320772 Mm.481303 NM_001193266 ENSMUSG00000034912 Mdga2 6720489L24Rik|9330209L04Rik|Mamdc1 MAM domain containing glycosylphosphatidylinositol anchor 2 0.000000 0.401274 -4.839193 chr9-754 chr9 119831075 119831231 + 25.4 NA intron (NM_153287, intron 1 of 4) intron (NM_153287, intron 1 of 4) 2203 NM_153287 215418 Mm.477982 NM_153287 ENSMUSG00000032515 Csrnp1 4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3 cysteine-serine-rich nuclear protein 1 0.025641 0.605096 3.434648 chr17-497 chr17 44323053 44323209 + 25.4 NA intron (NM_178652, intron 2 of 11) intron (NM_178652, intron 2 of 11) -45279 NM_001146038 12393 Mm.391017 NM_001145920 ENSMUSG00000039153 Runx2 AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a runt related transcription factor 2 0.006410 0.433121 -7.086552 chr3-542 chr3 87703529 87703685 + 25.4 NA Intergenic CpG -1070 NM_001003912 213498 Mm.287267 NM_001003912 ENSMUSG00000041977 Arhgef11 B930073M02|E130307F09|KIAA0380|MGC90827|RhoGEF|mKIAA0380 Rho guanine nucleotide exchange factor (GEF) 11 0.141026 0.757962 -3.501426 chr5-961 chr5 127906770 127906926 + 25.4 NA promoter-TSS (NM_133895) promoter-TSS (NM_133895) -253 NM_133895 100561 Mm.28506 NM_133895 ENSMUSG00000029416 Slc15a4 AA987064|AW742963|C130069N12Rik|PHT1|PTR4 solute carrier family 15, member 4 0.032051 0.573248 -3.839954 chr5-792 chr5 38947534 38947690 + 25.4 NA Intergenic Intergenic 25463 NM_001081144 100515 Mm.38277 NM_001081144 ENSMUSG00000046572 Zfp518b 6820424L24Rik|AA410078|AI661722|Znf518b zinc finger protein 518B 0.012821 0.420382 2.965701 chr6-450 chr6 8295600 8295756 + 25.4 NA intron (NR_033518, intron 2 of 3) intron (NR_033518, intron 2 of 3) 86391 NR_033518 100036521 Mm.458518 XM_001474303 ENSMUSG00000089862 Gm16039 OTTMUSG00000029336 predicted gene 16039 0.006410 0.458599 -5.736082 chr7-507 chr7 109284083 109284239 + 25.4 NA intron (NM_181853, intron 1 of 19) intron (NM_181853, intron 1 of 19) 754 NM_001170913 330627 Mm.183528 NM_001170912 ENSMUSG00000031026 Trim66 KIAA0298|Kiaa0298-hp|Tif1d tripartite motif-containing 66 0.032051 0.541401 -1.032090 chr7-461 chr7 73298174 73298330 + 25.4 NA Intergenic Intergenic 49220 NM_177740 244058 Mm.333943 NM_177740 ENSMUSG00000070509 Rgma BC059072|C230063O06|MGC38550|MGC69915 RGM domain family, member A 0.000000 0.484076 -0.164597 chr8-465 chr8 18714297 18714453 + 25.4 NA intron (NM_007426, intron 1 of 8) intron (NM_007426, intron 1 of 8) 27153 NM_007426 11601 Mm.439874 NM_007426 ENSMUSG00000031465 Angpt2 Agpt2|Ang-2|Ang2 angiopoietin 2 0.012821 0.496815 1.906534 chr3-572 chr3 101607614 101607770 + 25.4 NA Intergenic MIR|SINE|MIR 101507 NM_207205 78908 Mm.458336 NM_207205 ENSMUSG00000042035 Igsf3 1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466 immunoglobulin superfamily, member 3 0.012821 0.394904 4.015079 chr1-1156 chr1 194973752 194973908 + 25.4 NA promoter-TSS (NM_008059) promoter-TSS (NM_008059) 82 NM_008059 14373 Mm.439721 NM_008059 ENSMUSG00000009633 G0s2 AI255151|AV006465|MGC151415|MGC151417 G0/G1 switch gene 2 0.044872 0.592357 -4.393645 chr7-401 chr7 6385614 6385770 + 25.4 NA intron (NM_021323, intron 2 of 7) intron (NM_021323, intron 2 of 7) 50866 NM_021323 57775 Mm.394138 NM_021323 ENSMUSG00000051527 Usp29 Ocat ubiquitin specific peptidase 29 0.032051 0.503185 -6.358335 chr4-682 chr4 76709506 76709662 + 25.4 NA Intergenic Intergenic -644054 NM_011211 19266 Mm.403663 NM_001014288 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|MGC113757|MGC36851 protein tyrosine phosphatase, receptor type, D 0.000000 0.464968 -3.311791 chr12-658 chr12 86768948 86769104 + 25.4 NA intron (NM_001081423, intron 12 of 33) intron (NM_001081423, intron 12 of 33) 54974 NM_001081423 320244 Mm.132172 NM_001081423 ENSMUSG00000012609 Ttll5 1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998 tubulin tyrosine ligase-like family, member 5 0.012821 0.439490 -2.561569 chr2-660 chr2 6396258 6396414 + 25.4 NA Intergenic Intergenic 126329 NM_181399 98910 Mm.40673 NM_001080548 ENSMUSG00000039046 Usp6nl AI316785|RNTRE|TRE2NL|mKIAA0019 USP6 N-terminal like 0.019231 0.566879 -1.442262 chr15-439 chr15 100379701 100379857 + 25.4 NA intron (NM_033476, intron 1 of 15) intron (NM_033476, intron 1 of 15) 202 NM_033476 21422 Mm.219040 NM_033476 ENSMUSG00000009733 Tcfcp2 CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|UBP-1 transcription factor CP2 0.121795 0.713376 -1.838325 chr14-241 chr14 32398874 32399030 + 25.4 NA Intergenic Intergenic -19409 NM_008978 19256 Mm.8019 NM_008978 ENSMUSG00000021940 Ptpn20 typ protein tyrosine phosphatase, non-receptor type 20 0.006410 0.464968 2.422586 chr6-519 chr6 54219516 54219672 + 25.4 NA intron (NR_033635, intron 12 of 13) intron (NR_033635, intron 12 of 13) 17195 NM_023543 69993 Mm.321147 NM_001163640 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch chimerin (chimaerin) 2 0.006410 0.496815 -4.593112 chr5-884 chr5 103838494 103838650 + 25.4 NA TTS (NM_011204) TTS (NM_011204) 31133 NM_029415 75750 Mm.7446 NM_029415 ENSMUSG00000029321 Slc10a6 8430417G17Rik|C78479|MGC149979|Soat solute carrier family 10 (sodium/bile acid cotransporter family), member 6 0.012821 0.286624 2.085438 chr3-628 chr3 137801441 137801597 + 25.4 NA promoter-TSS (NM_016750) promoter-TSS (NM_016750) -466 NM_016750 51788 Mm.465508 NM_016750 ENSMUSG00000037894 H2afz H2A.Z H2A histone family, member Z 0.076923 0.662420 -3.695790 chr3-568 chr3 98283695 98283851 + 25.4 NA Intergenic ID4_|SINE|ID -23787 NM_026328 67709 Mm.46306 NM_026328 ENSMUSG00000027876 Reg4 2010002L15Rik|GISP|RELP regenerating islet-derived family, member 4 0.025641 0.515924 0.934684 chr11-779 chr11 77995152 77995308 + 25.4 NA exon (NM_026708, exon 1 of 4) exon (NM_026708, exon 1 of 4) 270 NM_026708 68385 Mm.390375 NM_026708 ENSMUSG00000019437 Tlcd1 0610007A15Rik|0610030G03Rik|AA690150|AU015616 TLC domain containing 1 0.064103 0.592357 -4.878656 chr15-421 chr15 92292811 92292967 + 25.4 NA intron (NM_001164593, intron 3 of 9) intron (NM_001164593, intron 3 of 9) 67900 NM_001164593 239618 Mm.479306 XM_001481302 Pdzrn4 1110017D07Rik|KIAA3027|LNX4|SAMCAP3L|mKIAA3027 PDZ domain containing RING finger 4 0.012821 0.363057 -1.673166 chr2-680 chr2 25639503 25639659 + 25.4 NA Intergenic Intergenic -1736 NM_001039095 71103 Mm.236431 NM_001039095 ENSMUSG00000036401 Glt6d1 4933411C14Rik|GT6m7|MGC130548 glycosyltransferase 6 domain containing 1 0.025641 0.535032 5.370134 chr11-883 chr11 108735912 108736068 + 25.4 NA promoter-TSS (NM_015732) promoter-TSS (NM_015732) -448 NM_015732 12006 Mm.71710 NM_015732 ENSMUSG00000000142 Axin2 Axi1|Axil|Conductin axin2 0.012821 0.452229 -6.555894 chr18-311 chr18 31590396 31590552 + 25.4 NA promoter-TSS (NM_009308) promoter-TSS (NM_009308) -49 NM_009308 20983 Mm.480440 NM_009308 ENSMUSG00000024261 Syt4 SytIV synaptotagmin IV 0.038462 0.560510 -3.767261 chr6-472 chr6 29221049 29221205 + 25.4 NA Intergenic Intergenic -1370 NM_001190461 69573 Mm.45161 NM_001190461 ENSMUSG00000043421 2310016C08Rik AW049004|Hig2|MGC103106 RIKEN cDNA 2310016C08 gene 0.032051 0.515924 -5.212938 chr11-787 chr11 80244954 80245110 + 25.4 NA intron (NM_178616, intron 1 of 13) intron (NM_178616, intron 1 of 13) 223 NM_178616 69077 Mm.260539 NM_178616 ENSMUSG00000017428 Psmd11 1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 0.115385 0.783440 -7.121123 chr2-932 chr2 180948702 180948858 + 25.4 NA Intergenic Intergenic 19805 NM_015730 11438 Mm.252369 NM_015730 ENSMUSG00000027577 Chrna4 Acra-4|Acra4|EBN1|ENFL1 cholinergic receptor, nicotinic, alpha polypeptide 4 0.025641 0.420382 0.122727 chr1-1001 chr1 108057715 108057871 + 25.4 NA intron (NM_133821, intron 1 of 16) intron (NM_133821, intron 1 of 16) 58378 NM_133821 98432 Mm.24115 XM_001475839 ENSMUSG00000044340 Phlpp1 AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606 PH domain and leucine rich repeat protein phosphatase 1 0.000000 0.452229 -2.518273 chr1-932 chr1 75025806 75025962 + 25.4 NA promoter-TSS (NM_170755) promoter-TSS (NM_170755) -112 NM_170755 227298 Mm.273062 NM_170755 ENSMUSG00000049339 Fam134a MGC47289 family with sequence similarity 134, member A 0.121795 0.681529 0.630528 chr5-840 chr5 78878480 78878636 + 25.4 NA Intergenic Intergenic -292035 NR_027806 231332 Mm.373616 NR_027806 Pea15b - phosphoprotein enriched in astrocytes 15B 0.012821 0.477707 -3.583932 chr13-440 chr13 63824202 63824358 + 25.4 NA promoter-TSS (NM_023507) promoter-TSS (NM_023507) -261 NM_001013608 76251 Mm.186610 NM_001013608 ENSMUSG00000021470 0610007P08Rik 1700019D06Rik|9330134C04Rik|MGC100170|Rad26l|Sr278 RIKEN cDNA 0610007P08 gene 0.044872 0.579618 1.278494 chr14-267 chr14 64482481 64482637 + 25.4 NA Intergenic Intergenic 64561 NM_028811 74195 Mm.474894 NM_028811 ENSMUSG00000022031 Elp3 2610507P14Rik|KAT9 elongation protein 3 homolog (S. cerevisiae) 0.025641 0.547771 -8.042220 chr2-684 chr2 26738438 26738594 + 25.4 NA promoter-TSS (NM_013678) promoter-TSS (NM_013678) 23 NM_013677 20930 Mm.347512 NM_013677 ENSMUSG00000015790 Surf1 0610010F23Rik|Surf-1 surfeit gene 1 0.064103 0.605096 -9.507810 chr6-582 chr6 91419465 91419621 + 25.4 NA Intergenic RLTR12A|LTR|ERVK 19384 NM_133928 72170 Mm.41622 NM_133928 ENSMUSG00000034203 Chchd4 2410012P20Rik|2810014D17Rik|AI838740 coiled-coil-helix-coiled-coil-helix domain containing 4 0.019231 0.382166 3.857530 chr11-899 chr11 113878212 113878368 + 25.4 NA intron (NM_172800, intron 1 of 44) intron (NM_172800, intron 1 of 44) 3751 NM_172800 237979 Mm.401394 NM_172800 ENSMUSG00000041592 Sdk2 4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514 sidekick homolog 2 (chicken) 0.025641 0.547771 -6.510795 chr17-393 chr17 5935378 5935534 + 25.4 NA intron (NM_001113352, intron 2 of 25) intron (NM_001113352, intron 2 of 25) 3389 NM_011523 20975 Mm.236068 NM_001113351 ENSMUSG00000023805 Synj2 AI481647|SJ2|mKIAA0348 synaptojanin 2 0.019231 0.433121 -4.498231 chr9-567 chr9 23307368 23307524 + 25.4 NA Intergenic Intergenic 333969 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator 0.006410 0.445860 5.705738 chr2-817 chr2 109806250 109806406 + 25.4 NA intron (NM_172671, intron 13 of 17) intron (NM_172671, intron 13 of 17) -12327 NM_026613 68201 Mm.181767 NM_026613 ENSMUSG00000027160 Ccdc34 2810027O19Rik|4930522P10Rik|AI596202 coiled-coil domain containing 34 0.006410 0.388535 -1.660601 chr1-1104 chr1 169206729 169206885 + 25.4 NA Intergenic Intergenic 20142 NM_019993 56752 Mm.474999 NM_019993 ENSMUSG00000026687 Aldh9a1 AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh aldehyde dehydrogenase 9, subfamily A1 0.025641 0.515924 -2.494103 chr6-545 chr6 72829334 72829490 + 25.4 NA promoter-TSS (NM_019715) promoter-TSS (NM_019715) 76 NM_019715 74287 Mm.29194 XM_001477544 ENSMUSG00000055239 Kcmf1 1700094M07Rik|Debt91|Pmcf potassium channel modulatory factor 1 0.160256 0.808917 -7.685790 chr9-648 chr9 61168327 61168483 + 25.4 NA Intergenic Intergenic -1966 NM_001083928 21887 Mm.469199 NM_001083927 ENSMUSG00000032280 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 transducin-like enhancer of split 3, homolog of Drosophila E(spl) 0.000000 0.350318 -4.245749 chr5-1001 chr5 140157737 140157893 + 25.4 NA Intergenic L1MC|LINE|L1 -2601 NM_175522 243312 Mm.237102 NM_175522 ENSMUSG00000048988 Elfn1 A930017N06Rik|AI197272 leucine rich repeat and fibronectin type III, extracellular 1 0.019231 0.471338 2.143629 chr3-476 chr3 21178050 21178206 + 25.4 NA Intergenic Intergenic -619878 NM_175086 11608 Mm.134863 NM_175086 ENSMUSG00000054988 Agtr1b AT1B|AT2R1B|Agtr-1b|Angtr-1b|MGC129325 angiotensin II receptor, type 1b 0.000000 0.464968 -4.263677 chr16-353 chr16 50797199 50797355 + 25.4 NA Intergenic Intergenic -145156 NR_028300 68190 Mm.139089 XM_916412 5330426P16Rik - RIKEN cDNA 5330426P16 gene 0.012821 0.414013 -2.362709 chrX-87 chrX 34880230 34880386 + 25.4 NA promoter-TSS (NM_021550) promoter-TSS (NM_021550) -538 NM_021550 59048 Mm.441410 NM_021550 ENSMUSG00000048970 C1galt1c1 1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc C1GALT1-specific chaperone 1 0.006410 0.401274 -4.629728 chr16-392 chr16 93772070 93772226 + 25.4 NA promoter-TSS (NM_028083) promoter-TSS (NM_028083) -292 NM_028083 110749 Mm.274222 NM_028083 ENSMUSG00000022945 Chaf1b 2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7 chromatin assembly factor 1, subunit B (p60) 0.083333 0.560510 -1.089807 chr12-581 chr12 53380144 53380300 + 25.4 NA Intergenic Intergenic -57474 NM_009706 11855 Mm.474991 NM_009706 ENSMUSG00000035133 Arhgap5 p190-B Rho GTPase activating protein 5 0.000000 0.356688 -8.471820 chr8-454 chr8 13633887 13634043 + 25.4 NA intron (NM_009025, intron 1 of 23) intron (NM_009025, intron 1 of 23) 43599 NM_009025 19414 Mm.18517 NM_009025 ENSMUSG00000031453 Rasa3 AI326412|C86362|E130011G04|GAPIII RAS p21 protein activator 3 0.000000 0.401274 -4.819313 chr15-323 chr15 27409111 27409267 + 25.4 NA Intergenic Intergenic -2212 NM_020332 11732 Mm.265264 NM_020332 ENSMUSG00000022265 Ank Ankh|D15Ertd221e|ank|mKIAA1581 progressive ankylosis 0.025641 0.528662 -3.540226 chr9-639 chr9 59077375 59077531 + 25.4 NA Intergenic Intergenic -12124 NM_028121 72141 Mm.22456 NM_028121 ENSMUSG00000025236 Adpgk 2610017G09Rik|Adp-gk|C77577 ADP-dependent glucokinase 0.025641 0.503185 -2.128882 chr11-892 chr11 109865965 109866121 + 25.4 NA intron (NM_153145, intron 26 of 38) intron (NM_153145, intron 26 of 38) 45984 NM_153145 217258 Mm.477194 NM_153145 ENSMUSG00000041828 Abca8a - ATP-binding cassette, sub-family A (ABC1), member 8a 0.000000 0.343949 -3.307542 chr11-780 chr11 78061816 78061972 + 25.4 NA promoter-TSS (NM_009143) promoter-TSS (NM_009143) 4 NM_009297 20926 Mm.20755 NM_009297 ENSMUSG00000002052 Supt6h 5131400N11Rik|AI132449|SPT6|mKIAA0162 suppressor of Ty 6 homolog (S. cerevisiae) 0.089744 0.643312 -3.872824 chr5-976 chr5 132474970 132475126 + 25.4 NA intron (NM_177047, intron 2 of 18) intron (NM_177047, intron 2 of 18) 351998 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.019231 0.471338 -0.417126 chr5-1019 chr5 143160407 143160563 + 25.4 NA promoter-TSS (NM_001033312) promoter-TSS (NM_001033312) -107 NM_001033312 231863 Mm.454456 NM_001033312 ENSMUSG00000066640 Fbxl18 AI427077|B130019G13Rik|C330021B20Rik F-box and leucine-rich repeat protein 18 0.051282 0.541401 -4.377069 chr2-730 chr2 50672004 50672160 + 25.4 NA Intergenic Intergenic -59610 NR_033595 227885 Mm.301654 NR_033595 Gm13498 OTTMUSG00000012426 predicted gene 13498 0.006410 0.445860 -3.883124 chr12-549 chr12 32773119 32773275 + 25.4 NA intron (NM_020272, intron 10 of 10) intron (NM_020272, intron 10 of 10) 20388 NM_001146201 30955 Mm.404021 NM_001146200 ENSMUSG00000020573 Pik3cg 5830428L06Rik|PI3Kgamma|p110gamma phosphoinositide-3-kinase, catalytic, gamma polypeptide 0.006410 0.458599 -3.672451 chr5-847 chr5 83280376 83280532 + 25.4 NA Intergenic Intergenic 593172 NR_035415 100316803 NR_035415 Mir1187 mmu-mir-1187 microRNA mir-1187 0.000000 0.554140 1.389711 chr1-859 chr1 39693817 39693973 + 25.4 NA Intergenic Intergenic -28360 NM_001145660 619289 Mm.334107 XM_001478116 ENSMUSG00000057173 Rfx8 4933400N17Rik regulatory factor X 8 0.000000 0.401274 -5.485895 chr18-318 chr18 38680112 38680268 + 25.4 NA Intergenic Intergenic 47052 NM_011898 24066 Mm.42038 NM_011898 ENSMUSG00000024427 Spry4 A030006O18Rik|sprouty4 sprouty homolog 4 (Drosophila) 0.006410 0.503185 -7.137938 chr1-1048 chr1 137824551 137824707 + 25.4 NA promoter-TSS (NM_001160145) promoter-TSS (NM_001160145) 0 NM_001160145 66241 Mm.41773 NM_001160145 ENSMUSG00000026411 Tmem9 1500015G18Rik|AW545782 transmembrane protein 9 0.012821 0.464968 -0.688280 chr1-864 chr1 39909162 39909318 + 25.4 NA intron (NM_008696, intron 3 of 30) intron (NM_008696, intron 3 of 30) 63782 NM_008696 26921 Mm.19073 NM_008696 ENSMUSG00000026074 Map4k4 9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik mitogen-activated protein kinase kinase kinase kinase 4 0.000000 0.382166 -3.491508 chr1-1147 chr1 191812722 191812878 + 25.4 NA Intergenic Intergenic 58668 NM_008937 19130 Mm.392678 NM_008937 ENSMUSG00000010175 Prox1 A230003G05Rik prospero-related homeobox 1 0.006410 0.490446 -0.802767 chr5-949 chr5 122429368 122429524 + 25.4 NA intron (NM_013636, intron 2 of 6) intron (NM_013636, intron 2 of 6) 10551 NM_013636 19047 Mm.474554 NM_013636 ENSMUSG00000004455 Ppp1cc PP1|dis2m1 protein phosphatase 1, catalytic subunit, gamma isoform 0.032051 0.420382 1.608330 chr5-810 chr5 54219349 54219505 + 25.4 NA Intergenic Intergenic -67343 NM_001081103 116873 Mm.265985 NM_001081103 ENSMUSG00000039156 Stim2 - stromal interaction molecule 2 0.012821 0.535032 -1.810074 chr15-428 chr15 96114662 96114818 + 25.4 NA promoter-TSS (NM_175251) promoter-TSS (NM_175251) -815 NM_175251 77044 Mm.17166 NM_175251 ENSMUSG00000033237 Arid2 1700124K17Rik|4432409D24Rik|zipzap/p200 AT rich interactive domain 2 (ARID, RFX-like) 0.121795 0.687898 -2.114595 chr16-387 chr16 92863761 92863917 + 25.4 NA Intergenic Intergenic -149233 NM_001111022 12394 Mm.470227 NM_001111021 ENSMUSG00000022952 Runx1 AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b runt related transcription factor 1 0.019231 0.630573 -1.838325 chr2-830 chr2 120832135 120832291 + 25.4 NA promoter-TSS (NM_177846) promoter-TSS (NM_177846) -74 NM_177846 329504 Mm.219449 XM_001003239 Lcmt2 D330024M17 leucine carboxyl methyltransferase 2 0.038462 0.522293 -2.579516 chr5-807 chr5 52700958 52701114 + 25.4 NA Intergenic Intergenic 48985 NM_011435 20657 Mm.2407 NM_011435 ENSMUSG00000072941 Sod3 AI314465|EC-SOD|MGC13799 superoxide dismutase 3, extracellular 0.006410 0.496815 -0.242944 chr17-479 chr17 34866268 34866424 + 25.4 NA Intergenic Intergenic -4800 NM_010380 14964 Mm.439675 NM_010380 ENSMUSG00000073411 H2-D1 H-2D|H2-D histocompatibility 2, D region locus 1 0.038462 0.541401 -4.711523 chr16-398 chr16 94678191 94678347 + 25.4 NA promoter-TSS (NM_007890) promoter-TSS (NM_007890) -734 NM_007890 13548 Mm.310973 NM_001113389 ENSMUSG00000022897 Dyrk1a 2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|MGC150253|MGC150254|Mnbh|Mp86|mmb dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a 0.070513 0.662420 -5.717066 chr7-577 chr7 132697493 132697649 + 25.4 NA promoter-TSS (NM_198017) promoter-TSS (NM_198017) 4 NM_198017 109359 Mm.274824 NM_198017 ENSMUSG00000030965 Fam175b AA589499|AI853413|Abro1|C430003P19Rik family with sequence similarity 175, member B 0.064103 0.605096 2.936821 chr11-717 chr11 53638273 53638429 + 25.4 NA intron (NR_033332, intron 3 of 3) intron (NR_033332, intron 3 of 3) 24456 NM_001159396 16362 Mm.105218 NM_001159393 ENSMUSG00000018899 Irf1 AU020929|Irf-1 interferon regulatory factor 1 0.032051 0.560510 -2.624119 chr6-601 chr6 97821297 97821453 + 25.4 NA intron (NM_001113198, intron 1 of 9) intron (NM_001113198, intron 1 of 9) 48855 NM_001113198 17342 Mm.454504 NM_001113198 ENSMUSG00000035158 Mitf Bhlhe32|MGC124309|MGC124310|Vitiligo|Wh|bw|mi|vit microphthalmia-associated transcription factor 0.006410 0.458599 5.955985 chr7-584 chr7 133589080 133589236 + 25.4 NA intron (NM_133941, intron 2 of 11) intron (NM_133941, intron 2 of 11) 25988 NM_133941 101437 Mm.199223 NM_133941 ENSMUSG00000030986 Dhx32 3110079L04Rik|4732469F02Rik|AA408140|Ddx32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 0.012821 0.535032 1.568614 chrX-124 chrX 146834814 146834970 + 25.4 NA Intergenic Intergenic -26495 NM_177201 320595 Mm.17156 NM_001113354 ENSMUSG00000041229 Phf8 9830141C09Rik|mKIAA1111 PHD finger protein 8 0.006410 0.343949 -4.151023 chr4-873 chr4 152625191 152625347 + 25.4 NA Intergenic Intergenic -175767 NM_175287 97159 Mm.7066 NM_001163019 ENSMUSG00000047613 A430005L14Rik C79672 RIKEN cDNA A430005L14 gene 0.025641 0.541401 -4.402392 chrX-94 chrX 67193502 67193658 + 25.4 NA Intergenic Intergenic -117231 NM_001081354 333639 Mm.371730 NM_001081354 ENSMUSG00000059401 Mamld1 G630014P10Rik mastermind-like domain containing 1 0.000000 0.477707 -2.009930 chr1-810 chr1 11123350 11123506 + 25.4 NA intron (NM_029525, intron 15 of 39) intron (NM_029525, intron 15 of 39) -125748 NM_001033636 109294 Mm.123247 XM_001475275 Prex2 6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 0.006410 0.426752 -2.974458 chr4-799 chr4 130813611 130813767 + 25.4 NA Intergenic Intergenic 296665 NM_011214 19273 Mm.4860 NM_001083119 ENSMUSG00000028909 Ptpru Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda protein tyrosine phosphatase, receptor type, U 0.006410 0.515924 -6.986209 chr1-1122 chr1 181123462 181123618 + 25.4 NA intron (NM_027188, intron 5 of 11) intron (NM_027188, intron 5 of 11) 231138 NM_027188 69726 Mm.222338 NM_027188 ENSMUSG00000055067 Smyd3 2410008A19Rik|Zmynd1 SET and MYND domain containing 3 0.025641 0.458599 1.562723 chr9-713 chr9 96633497 96633653 + 25.4 NA 3' UTR (NM_153420, exon 7 of 7) 3' UTR (NM_153420, exon 7 of 7) 65199 NM_153420 235534 Mm.233031 NM_153420 ENSMUSG00000043587 Acpl2 9430094M07Rik|BB177120|C130099A20Rik|DKFZp434B2119|MGC38214 acid phosphatase-like 2 0.025641 0.547771 -4.796884 chr6-598 chr6 97350568 97350724 + 25.4 NA intron (NM_145148, intron 6 of 23) intron (NM_145148, intron 6 of 23) -132403 NM_001081157 320502 Mm.68163 NM_001081157 ENSMUSG00000044086 Lmod3 5430424A14Rik|MGC156399 leiomodin 3 (fetal) 0.012821 0.496815 -2.032000 chr15-376 chr15 66762130 66762286 + 25.4 NA intron (NM_008681, intron 15 of 15) intron (NM_008681, intron 15 of 15) 37102 NM_008681 17988 Mm.30837 NM_008681 ENSMUSG00000005125 Ndrg1 CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5 N-myc downstream regulated gene 1 0.012821 0.477707 8.956414 chr8-548 chr8 89650633 89650789 + 25.4 NA Intergenic Intergenic -14600 NM_009172 20437 Mm.324553 NM_009172 ENSMUSG00000036840 Siah1a AA982064|AI853500|Sinh1a seven in absentia 1A 0.006410 0.331210 0.129173 chr6-442 chr6 5675612 5675768 + 25.4 NA promoter-TSS (NM_010063) promoter-TSS (NM_010063) 52 NM_001191026 13426 Mm.20893 NM_001191023 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 0.096154 0.751592 9.841570 chr15-386 chr15 72976890 72977046 + 25.4 NA intron (NM_153178, intron 1 of 18) intron (NM_153178, intron 1 of 18) 35235 NM_153178 239528 Mm.274482 NM_153178 ENSMUSG00000036698 Eif2c2 Ago2|ENSMUSG00000072493|Gerp95|Gm10365|KIAA4215|mKIAA4215 eukaryotic translation initiation factor 2C, 2 0.032051 0.503185 -4.460094 chr11-802 chr11 85145563 85145719 + 25.4 NA intron (NM_016910, intron 2 of 5) intron (NM_016910, intron 2 of 5) 18193 NM_016910 53892 Mm.45609 NM_016910 ENSMUSG00000020525 Ppm1d AV338790|Wip1 protein phosphatase 1D magnesium-dependent, delta isoform 0.012821 0.439490 -1.104794 chr4-770 chr4 118502998 118503154 + 25.4 NA Intergenic Intergenic 43178 NM_133892 100470 Mm.26698 NM_133892 ENSMUSG00000024903 Lao1 AW990848 L-amino acid oxidase 1 0.012821 0.547771 -5.662598 chr1-1113 chr1 173350544 173350700 + 25.4 NA Intergenic Intergenic 10470 NM_019484 56009 Mm.389208 NM_019484 ENSMUSG00000060244 Refbp2 C130042O11Rik|MGC117570|REF2 RNA and export factor binding protein 2 0.000000 0.407643 -3.180853 chr5-980 chr5 135032971 135033127 + 25.4 NA Intergenic Intergenic -1168 NM_007925 13717 Mm.404771 NM_007925 ENSMUSG00000029675 Eln AI385707|AI480567|E030024M20Rik elastin 0.006410 0.554140 -2.099898 chr1-1084 chr1 160841487 160841643 + 25.4 NA Intergenic Intergenic -47450 NM_001085376 23850 Mm.458621 XM_001472777 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe pappalysin 2 0.006410 0.439490 -4.313395 chr17-563 chr17 87268584 87268740 + 25.4 NA intron (NM_028639, intron 16 of 19) intron (NM_028639, intron 16 of 19) 67405 NM_029298 75467 Mm.50108 XM_001481211 ENSMUSG00000036557 1700011E24Rik - RIKEN cDNA 1700011E24 gene 0.019231 0.547771 -7.217525 chr13-471 chr13 100158730 100158886 + 25.4 NA Intergenic Intergenic -74086 NM_027064 69382 Mm.45466 XM_001473501 ENSMUSG00000045022 1700024P04Rik H2bl1|Subh2bv RIKEN cDNA 1700024P04 gene 0.038462 0.541401 -1.354577 chr1-1029 chr1 132255116 132255272 + 25.4 NA Intergenic Intergenic -4649 NM_007827 13137 Mm.436759 NM_007827 ENSMUSG00000026401 Daf2 AI323748|Cd55b|Daf|Daf-TM|MGC156369|TM-DAF decay accelerating factor 2 0.000000 0.401274 0.114872 chr6-456 chr6 13582008 13582164 + 25.4 NA intron (NM_175312, intron 3 of 4) intron (NM_175312, intron 3 of 4) -24023 NM_028990 101118 Mm.254845 NM_028990 ENSMUSG00000029569 Tmem168 5730526F17Rik|8430437G11Rik|AI462344|AI504145 transmembrane protein 168 0.006410 0.407643 0.772632 chr14-196 chr14 6977944 6978100 + 25.4 NA Intergenic L1MD2|LINE|L1 -13495 NM_024221 68263 Mm.301527 NM_024221 ENSMUSG00000021748 Pdhb 2610103L06Rik|AL024199|C81408 pyruvate dehydrogenase (lipoamide) beta 0.006410 0.445860 -0.171293 chr14-205 chr14 12564085 12564241 + 25.4 NA Intergenic Intergenic 100021 NM_177624 218739 Mm.39919 NM_177624 ENSMUSG00000044772 Sntn A430083B19Rik sentan, cilia apical structure protein 0.006410 0.458599 -7.559447 chr3-583 chr3 107255656 107255812 + 25.4 NA Intergenic Intergenic 26112 NM_008417 16490 Mm.56930 NM_008417 ENSMUSG00000040724 Kcna2 Akr6a4|Kca1-2|Kv1.2|Mk-2 potassium voltage-gated channel, shaker-related subfamily, member 2 0.006410 0.439490 4.169670 chr1-940 chr1 75350943 75351099 + 25.4 NA intron (NM_183022, intron 1 of 9) intron (NM_183022, intron 1 of 9) 11598 NM_001001565 74241 Mm.260577 NM_001001565 ENSMUSG00000032997 Chpf 1700028N03Rik|AI414328|D1Bwg1363e chondroitin polymerizing factor 0.025641 0.528662 3.340398 chr9-627 chr9 56304752 56304908 + 25.4 NA Intergenic Intergenic 87848 NM_025812 66867 Mm.150856 NM_025812 ENSMUSG00000032329 Hmg20a 1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf high mobility group 20A 0.038462 0.617834 -3.672369 chr13-359 chr13 13206531 13206687 + 25.4 NA Intergenic Intergenic -20859 NM_031999 83924 Mm.415635 NM_031999 ENSMUSG00000021306 Gpr137b AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1 G protein-coupled receptor 137B 0.012821 0.496815 -9.762130 chr4-802 chr4 131541921 131542077 + 25.4 NA TTS (NR_002865) TTS (NR_002865) 263 NR_002865 353373 Mm.424675 NR_002865 Rnu11 MBII-407|Mirn801|mir-801|mmu-mir-801 U11 small nuclear RNA 0.038462 0.458599 -3.666272 chr13-370 chr13 28728894 28729050 + 25.4 NA Intergenic Intergenic 232175 NM_009238 20677 Mm.455819 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY-box containing gene 4 0.019231 0.433121 -3.807532 chr14-206 chr14 14963235 14963391 + 25.4 NA Intergenic RLTR12B|LTR|ERVK -79267 NM_021504 59007 Mm.258381 NM_021504 ENSMUSG00000021785 Ngly1 1110002C09Rik|PNGase|Png1 N-glycanase 1 0.006410 0.388535 -0.822461 chr13-377 chr13 32026514 32026670 + 25.4 NA intron (NM_146041, intron 7 of 10) intron (NM_146041, intron 7 of 10) 212482 NM_008592 17300 Mm.12949 NM_008592 ENSMUSG00000050295 Foxc1 FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda forkhead box C1 0.019231 0.509554 -5.472964 chr18-306 chr18 25731127 25731283 + 25.4 NA intron (NM_001146294, intron 2 of 12) intron (NM_001146294, intron 2 of 12) 165788 NM_133195 108013 Mm.266435 XM_001473121 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 0.019231 0.496815 -3.301542 chr18-285 chr18 10242638 10242794 + 25.4 NA Intergenic Intergenic -60926 NM_009071 19877 Mm.6710 NM_009071 ENSMUSG00000024290 Rock1 1110055K06Rik|Rock-I Rho-associated coiled-coil containing protein kinase 1 0.006410 0.382166 -1.679282 chr12-550 chr12 33044414 33044570 + 25.4 NA Intergenic Intergenic 80457 NM_001162903 72123 Mm.478577 NM_001162903 2010109K11Rik AV375874 RIKEN cDNA 2010109K11 gene 0.019231 0.535032 3.059681 chr9-670 chr9 68909443 68909599 + 25.4 NA intron (NM_013646, intron 1 of 10) intron (NM_013646, intron 1 of 10) -287640 NM_145618 93697 Mm.35911 NM_145618 ENSMUSG00000032235 Narg2 B230343B06Rik NMDA receptor-regulated gene 2 0.012821 0.503185 2.618943 chr10-473 chr10 59104742 59104898 + 25.4 NA intron (NM_144822, intron 1 of 11) intron (NM_144822, intron 1 of 11) 6829 NM_144822 216001 Mm.27199 NM_144822 ENSMUSG00000020111 Cbara1 C730016L05Rik|CALC|MGC29229|MGC36365|MGC36503|MGC36634 calcium binding atopy-related autoantigen 1 0.012821 0.433121 3.232382 chr7-491 chr7 97220879 97221035 + 25.4 NA intron (NM_001039039, intron 1 of 1) intron (NM_001039039, intron 1 of 1) 13443 NM_001039039 622320 Mm.334029 NM_001039039 ENSMUSG00000044952 Kctd21 EG622320 potassium channel tetramerisation domain containing 21 0.006410 0.541401 -1.933603 chr14-262 chr14 62164136 62164292 + 25.4 NA intron (NM_008092, intron 2 of 6) intron (NM_008092, intron 2 of 6) -16579 NM_201610 382913 Mm.239490 NM_201610 ENSMUSG00000035121 Neil2 Gm1212|NEH2 nei like 2 (E. coli) 0.000000 0.452229 2.135292 chr7-499 chr7 100369738 100369894 + 25.4 NA intron (NM_011671, intron 2 of 7) intron (NM_011671, intron 2 of 7) 2390 NM_011671 22228 Mm.171378 NM_011671 ENSMUSG00000033685 Ucp2 Slc25a8 uncoupling protein 2 (mitochondrial, proton carrier) 0.006410 0.560510 -4.395902 chr7-420 chr7 30130381 30130537 + 25.4 NA Intergenic CpG -1604 NM_172142 243910 Mm.386878 NM_172142 ENSMUSG00000036931 Nfkbid IkappaBNS|MGC130396 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta 0.108974 0.668790 -4.471581 chr10-482 chr10 61735951 61736107 + 25.4 NA promoter-TSS (NM_001146100) promoter-TSS (NM_001146100) -251 NM_001146100 15275 Mm.196605 NM_001146100 ENSMUSG00000037012 Hk1 BB404130|Hk-1|Hk1-s|dea|mHk1-s hexokinase 1 0.038462 0.560510 -3.720728 chr3-500 chr3 43581812 43581968 + 25.4 NA Intergenic (TTCTG)n|Simple_repeat|Simple_repeat 1742724 NM_027271 73852 Mm.29006 NM_001099785 ENSMUSG00000025766 D3Ertd751e 2810009O15Rik|4930415G15Rik DNA segment, Chr 3, ERATO Doi 751, expressed 0.000000 0.401274 -2.106986 chr4-830 chr4 140817230 140817386 + 25.4 NA promoter-TSS (NR_030695) promoter-TSS (NR_030695) -929 NR_030695 320456 Mm.32859 NR_030695 B330016D10Rik - RIKEN cDNA B330016D10 gene 0.089744 0.751592 -8.947542 chr17-410 chr17 11974584 11974740 + 25.4 NA intron (NM_026644, intron 1 of 8) intron (NM_026644, intron 1 of 8) 12021 NM_026644 68262 Mm.258300 NM_026644 ENSMUSG00000023827 Agpat4 1500003P24Rik 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 0.025641 0.535032 1.873882 chr14-272 chr14 68056893 68057049 + 25.4 NA Intergenic Intergenic -68377 NM_010920 18092 Mm.390691 NM_010920 ENSMUSG00000044186 Nkx2-6 AV044928|Nkx-2.6|Nkx2.6|Tix|tinman NK2 transcription factor related, locus 6 (Drosophila) 0.006410 0.496815 -5.030869 chr17-427 chr17 24196565 24196721 + 25.4 NA Intergenic RLTR24|LTR|ERV1 -1429 NM_025954 67078 Mm.28541 NM_025954 ENSMUSG00000043445 Pgp 1700012G19Rik|AI481330|MGC103027 phosphoglycolate phosphatase 0.012821 0.458599 -2.889671 chr2-848 chr2 137773337 137773493 + 25.4 NA Intergenic Intergenic -174609 NM_001025431 228662 Mm.153405 NM_001025431 ENSMUSG00000062098 Btbd3 MGC25591|mKIAA0952 BTB (POZ) domain containing 3 0.000000 0.407643 -5.342553 chr4-809 chr4 135009086 135009242 + 25.4 NA intron (NM_178257, intron 3 of 6) intron (NM_178257, intron 3 of 6) 8869 NM_178257 230828 Mm.261647 NM_178257 ENSMUSG00000037157 Il22ra1 IL-22R|Il22r interleukin 22 receptor, alpha 1 0.006410 0.490446 -2.769354 chr14-283 chr14 91790761 91790917 + 25.4 NA Intergenic Intergenic 981027 NM_001081377 211712 Mm.458162 NM_001081377 ENSMUSG00000055421 Pcdh9 1500001L12Rik|A730003J17Rik|AU021802|C530050I23Rik|C630029H24Rik|Gm1213|Gm297 protocadherin 9 0.012821 0.573248 -2.629466 chr13-453 chr13 88689558 88689714 + 25.4 NA Intergenic A-rich|Low_complexity|Low_complexity -606039 NM_010103 13612 Mm.125580 NM_001037987 ENSMUSG00000034488 Edil3 Del-1|Del1 EGF-like repeats and discoidin I-like domains 3 0.000000 0.324841 -5.725527 chr19-206 chr19 10426230 10426386 + 25.4 NA Intergenic Intergenic -29826 NM_018801 54525 Mm.182654 NM_018801 ENSMUSG00000024743 Syt7 AI851541|B230112P13Rik synaptotagmin VII 0.006410 0.445860 6.468013 chr12-615 chr12 74473150 74473306 + 25.4 NA Intergenic Intergenic -7995 NM_178715 238257 Mm.251196 NM_178715 ENSMUSG00000034435 Tmem30b 9130011B11Rik transmembrane protein 30B 0.019231 0.509554 -2.269299 chr11-903 chr11 115035266 115035422 + 25.4 NA intron (NM_001033393, intron 8 of 9) intron (NM_001033393, intron 8 of 9) 31768 NM_001033393 320534 Mm.260587 NM_001033393 ENSMUSG00000045980 Tmem104 C630005D06Rik|mFLJ00021 transmembrane protein 104 0.025641 0.490446 -7.147694 chr7-451 chr7 63859963 63860119 + 25.4 NA Intergenic Intergenic -42176 NM_021366 50794 Mm.240473 NM_021366 ENSMUSG00000052040 Klf13 0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 0.012821 0.484076 -4.241501 chr6-658 chr6 137304498 137304654 + 25.4 NA intron (NM_001164401, intron 1 of 25) intron (NM_001164401, intron 1 of 25) -70340 NM_001164402 19277 Mm.446785 NM_001164401 ENSMUSG00000030223 Ptpro GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi protein tyrosine phosphatase, receptor type, O 0.006410 0.445860 0.124138 chr11-920 chr11 119806536 119806692 + 25.4 NA intron (NM_001037754, intron 6 of 13) intron (NM_001037754, intron 6 of 13) 24338 NR_029767 723844 NR_029767 Mir338 Mirn338|mmu-mir-338 microRNA 338 0.025641 0.541401 -3.734108 chr13-441 chr13 64003277 64003433 + 25.4 NA Intergenic Intergenic 95068 NM_008291 15487 Mm.5109 NM_008291 ENSMUSG00000033122 Hsd17b3 - hydroxysteroid (17-beta) dehydrogenase 3 0.006410 0.414013 8.956414 chr19-210 chr19 16247635 16247791 + 25.4 NA intron (NM_008139, intron 1 of 6) intron (NM_008139, intron 1 of 6) 16597 NR_033228 595139 Mm.443406 NR_033228 E030024N20Rik 9030417F11Rik|Ppia-ps8 peptidylprolyl isomerase A pseudogene 8 0.019231 0.375796 -4.213893 chr16-380 chr16 91773196 91773352 + 25.4 NA intron (NM_010587, intron 28 of 38) intron (NM_010587, intron 28 of 38) 47215 NM_138597 28080 Mm.41 NM_138597 ENSMUSG00000022956 Atp5o ATPO|D12Wsu28e|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit 0.012821 0.585987 -2.658140 chr1-850 chr1 37468712 37468868 + 25.4 NA intron (NM_173870, intron 1 of 14) intron (NM_173870, intron 1 of 14) 12015 NM_173870 269181 Mm.447744 NM_173870 ENSMUSG00000026110 Mgat4a 9530018I07Rik|GnT-IVa mannoside acetylglucosaminyltransferase 4, isoenzyme A 0.000000 0.426752 -3.712478 chr6-607 chr6 99937011 99937167 + 25.4 NA Intergenic Intergenic -245234 NM_001170419 50501 Mm.87365 NM_001037539 ENSMUSG00000030069 Prok2 Bv8|PK2|Prok1 prokineticin 2 0.025641 0.643312 -5.023257 chr7-459 chr7 68247606 68247762 + 25.4 NA Intergenic Intergenic 100333 NM_001013811 434197 Mm.216193 NM_001013811 ENSMUSG00000074071 Fam169b EG434197 family with sequence similarity 169, member B 0.038462 0.471338 -3.536161 chr3-603 chr3 122630863 122631019 + 25.4 NA Intergenic Intergenic -19252 NM_153118 214459 Mm.470230 NM_001114665 ENSMUSG00000039735 Fnbp1l 2610318I01Rik|AW548221|MGC30506|TOCA1 formin binding protein 1-like 0.019231 0.509554 -4.953780 chr5-923 chr5 115927823 115927979 + 25.4 NA intron (NM_001080808, intron 4 of 8) intron (NM_001080808, intron 4 of 8) 34916 NM_198163 77407 Mm.27553 NM_198163 ENSMUSG00000029518 Rab35 9530019H02Rik|AU040256|H-ray|RAB1C|RAY RAB35, member RAS oncogene family 0.012821 0.426752 -1.919504 chr11-912 chr11 117435672 117435828 + 25.4 NA Intergenic Intergenic 8414 NR_015489 78403 Mm.212543 NR_015489 2900041M22Rik - RIKEN cDNA 2900041M22 gene 0.019231 0.503185 -3.294291 chr2-841 chr2 130722082 130722238 + 25.4 NA TTS (NM_009730) TTS (NM_009730) 11963 NM_020014 14588 Mm.198399 NM_001136063 ENSMUSG00000027316 Gfra4 AW060733|G630015H18Rik glial cell line derived neurotrophic factor family receptor alpha 4 0.012821 0.471338 -3.491077 chr6-634 chr6 115507705 115507861 + 25.4 NA Intergenic MER82|DNA|MER2_type -2539 NM_199033 381802 Mm.291208 NM_199033 ENSMUSG00000042389 Tsen2 AU067695|MGC69703 tRNA splicing endonuclease 2 homolog (S. cerevisiae) 0.006410 0.414013 -2.072309 chr1-1056 chr1 141050159 141050315 + 25.4 NA intron (NM_133239, intron 10 of 11) intron (NM_133239, intron 10 of 11) 143250 NM_133239 170788 Mm.95700 NM_133239 ENSMUSG00000063681 Crb1 7530426H14Rik|A930008G09Rik crumbs homolog 1 (Drosophila) 0.000000 0.407643 -3.134725 chr15-310 chr15 4920653 4920809 + 25.4 NA Intergenic ERVL-B4|LTR|ERVL 74780 NM_001166066 223825 Mm.159281 XM_127913 ENSMUSG00000022155 Heatr7b2 4930455B06Rik|FLJ40243 XVHEAT repeat family member 7B2 0.000000 0.439490 -3.829081 chr11-815 chr11 88171110 88171266 + 25.4 NA intron (NM_054043, intron 11 of 13) intron (NM_054043, intron 11 of 13) 60951 NM_028859 74297 Mm.207320 XM_484061 ENSMUSG00000034031 1700106J16Rik - RIKEN cDNA 1700106J16 gene 0.032051 0.414013 0.497529 chr2-752 chr2 65421717 65421873 + 25.4 NA Intergenic Intergenic -49488 NM_001099298 110876 Mm.220329 XM_001472855 ENSMUSG00000075318 Scn2a1 6430408L10|A230052E19Rik|Nav1.2|Scn2a sodium channel, voltage-gated, type II, alpha 1 0.019231 0.382166 -2.205461 chr9-740 chr9 114688392 114688548 + 25.4 NA intron (NM_027294, intron 1 of 3) intron (NM_027294, intron 1 of 3) 4380 NM_027294 70031 Mm.150064 NM_027294 ENSMUSG00000041012 Cmtm8 2700018N07Rik|AA408515|Cklfsf8 CKLF-like MARVEL transmembrane domain containing 8 0.006410 0.503185 -0.710455 chr1-910 chr1 66946188 66946344 + 25.4 NA intron (NM_021295, intron 4 of 9) intron (NM_021295, intron 4 of 9) 25776 NM_001190984 14768 Mm.20522 NM_001190984 ENSMUSG00000026000 Lancl1 AW124738|Gpr69|Gpr69a|p40 LanC (bacterial lantibiotic synthetase component C)-like 1 0.000000 0.471338 -2.900626 chr9-709 chr9 96247877 96248033 + 25.4 NA Intergenic Intergenic 39992 NM_011279 19823 Mm.28235 NM_011279 ENSMUSG00000051234 Rnf7 Rbx2|SAG ring finger protein 7 0.012821 0.484076 -1.973318 chr14-235 chr14 31198827 31198983 + 25.4 NA Intergenic Intergenic 18477 NM_001034037 67085 Mm.109099 NM_001034037 ENSMUSG00000072473 1700024G13Rik C10orf53|MGC130143|MGC130144 RIKEN cDNA 1700024G13 gene 0.032051 0.547771 -2.862083 chr11-776 chr11 77257820 77257976 + 25.4 NA intron (NM_177710, intron 12 of 14) intron (NM_177710, intron 12 of 14) -22209 NM_139129 216961 Mm.33477 NM_139128 ENSMUSG00000020836 Coro6 - coronin 6 0.000000 0.299363 -4.199764 chr15-444 chr15 102124730 102124886 + 25.4 NA exon (NM_001014976, exon 2 of 31) exon (NM_001014976, exon 2 of 31) 482 NM_001014976 105988 Mm.288324 NM_001014976 ENSMUSG00000058290 Espl1 AL024103|AU045071|Cerp|ESP1|PRCE|SSE extra spindle poles-like 1 (S. cerevisiae) 0.019231 0.484076 -6.731095 chr7-607 chr7 143199806 143199962 + 25.4 NA intron (NM_008434, intron 15 of 15) intron (NM_008434, intron 15 of 15) 70556 NM_009876 12577 Mm.168789 NM_001161624 ENSMUSG00000037664 Cdkn1c AL024410|CDKI|Kip2|p57(kip2)|p57Kip2 cyclin-dependent kinase inhibitor 1C (P57) 0.025641 0.605096 -3.222713 chr11-834 chr11 95397660 95397816 + 25.4 NA intron (NM_033217, intron 1 of 5) intron (NM_033217, intron 1 of 5) 6050 NM_033217 18053 Mm.283893 NM_033217 ENSMUSG00000000120 Ngfr LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR nerve growth factor receptor (TNFR superfamily, member 16) 0.006410 0.471338 -2.693635 chr17-490 chr17 42479902 42480058 + 25.4 NA promoter-TSS (NM_178589) promoter-TSS (NM_178589) -58 NM_178589 94185 Mm.200792 NM_178589 ENSMUSG00000023915 Tnfrsf21 AA959878|DR6|R74815|TR7 tumor necrosis factor receptor superfamily, member 21 0.070513 0.636943 -1.728499 chr7-444 chr7 49061508 49061664 + 25.4 NA intron (NM_001111016, intron 2 of 38) intron (NM_001111016, intron 2 of 38) -52623 NM_175272 78286 Mm.471488 NM_001111016 ENSMUSG00000052512 Nav2 5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015 neuron navigator 2 0.000000 0.528662 -0.005657 chr10-513 chr10 79988095 79988251 + 25.4 NA intron (NM_145421, intron 3 of 4) intron (NM_145421, intron 3 of 4) 5297 NM_145421 216169 Mm.479527 NM_145421 ENSMUSG00000003346 Fam108a 1700013O15Rik|BC005632|D10Bwg1364e|MGC11699|MGC90979 family with sequence similarity 108, member A 0.000000 0.630573 2.453941 chr1-1081 chr1 160416475 160416631 + 25.4 NA intron (NM_007495, intron 10 of 22) intron (NM_007495, intron 10 of 22) 74252 NR_030441 735253 NR_030441 Mir488 Mirn488|mmu-mir-488 microRNA 488 0.000000 0.439490 -6.232274 chr7-438 chr7 45764732 45764888 + 25.4 NA promoter-TSS (NM_021482) promoter-TSS (NM_021482) -57 NM_021482 58867 Mm.214217 NM_021482 ENSMUSG00000040231 Syngr4 1700016O14Rik synaptogyrin 4 0.102564 0.605096 -5.044951 chr13-470 chr13 100129268 100129424 + 25.4 NA Intergenic Tigger7|DNA|MER2_type -44624 NM_027064 69382 Mm.45466 XM_001473501 ENSMUSG00000045022 1700024P04Rik H2bl1|Subh2bv RIKEN cDNA 1700024P04 gene 0.012821 0.496815 -3.541013 chr6-627 chr6 114888090 114888246 + 25.4 NA promoter-TSS (NM_177683) promoter-TSS (NM_177683) -797 NM_177683 232334 Mm.446323 NM_177683 ENSMUSG00000030315 Vgll4 BC048841|MGC54805|VGL-4 vestigial like 4 (Drosophila) 0.006410 0.509554 -3.473837 chr18-294 chr18 16561182 16561338 + 25.4 NA Intergenic Intergenic 390807 NM_007664 12558 Mm.257437 NM_007664 ENSMUSG00000024304 Cdh2 CDHN|N-cadherin|Ncad cadherin 2 0.006410 0.464968 0.958790 chr10-495 chr10 74364512 74364668 + 25.4 NA Intergenic Intergenic -46356 NM_010311 14687 Mm.393508 NM_010311 ENSMUSG00000040009 Gnaz AI847979|Gz guanine nucleotide binding protein, alpha z subunit 0.025641 0.592357 -5.763183 chr9-771 chr9 123675530 123675686 + 25.4 NA intron (NM_148925, intron 10 of 18) intron (NM_148925, intron 10 of 18) 20434 NM_030712 80901 Mm.124289 NM_030712 ENSMUSG00000048521 Cxcr6 BB217514|BONZO|STRL33 chemokine (C-X-C motif) receptor 6 0.006410 0.414013 2.553286 chr11-825 chr11 90075360 90075516 + 25.4 NA intron (NM_026178, intron 2 of 6) intron (NM_026178, intron 2 of 6) 9873 NM_026178 67468 Mm.277518 NM_026178 ENSMUSG00000003948 Mmd 1200017E07Rik|1810073C06Rik|AA690185 monocyte to macrophage differentiation-associated 0.012821 0.458599 -1.278501 chr2-815 chr2 106186255 106186411 + 25.4 NA Intergenic Intergenic -307964 NM_001143683 77015 Mm.45628 NM_001143683 Mpped2 239Fb|2700082O15Rik|AV354767|AW060960 metallophosphoesterase domain containing 2 0.051282 0.560510 4.858371 chr3-652 chr3 147532517 147532673 + 25.4 NA Intergenic Lx|LINE|L1 742843 NM_027594 70892 Mm.187793 XM_001005473 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|Ttll7s tubulin tyrosine ligase-like family, member 7 0.019231 0.426752 -5.314123 chr1-1093 chr1 166993792 166993948 + 25.4 NA intron (NM_032005, intron 1 of 7) intron (NM_032005, intron 1 of 7) 3578 NM_032005 83993 Mm.190649 NM_032005 ENSMUSG00000026572 Tbx19 AU019250|D1Ertd754e|Tpit T-box 19 0.025641 0.496815 -3.834951 chr12-625 chr12 77466814 77466970 + 25.4 NA intron (NM_153804, intron 1 of 18) intron (NM_153804, intron 1 of 18) 14493 NM_153804 263406 Mm.291854 NM_153804 ENSMUSG00000052609 Plekhg3 BC030417|MGC40768 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 0.025641 0.592357 -6.708680 chr11-658 chr11 6061009 6061165 + 25.4 NA intron (NM_173748, intron 2 of 5) intron (NM_173748, intron 2 of 5) -11423 NR_029471 100042173 Mm.441799 XM_001478643 Gm11968 OTTMUSG00000005107 Rps15a pseudogene 0.006410 0.433121 -0.774266 chr19-224 chr19 27970765 27970921 + 25.4 NA intron (NM_011265, intron 1 of 16) intron (NM_011265, intron 1 of 16) 78102 NM_001166414 19726 Mm.313321 NM_001166414 ENSMUSG00000040929 Rfx3 C230093O12Rik|MRFX3 regulatory factor X, 3 (influences HLA class II expression) 0.012821 0.515924 1.118228 chr9-701 chr9 87663320 87663476 + 25.4 NA Intergenic Intergenic -134192 NM_023814 76365 Mm.158789 NM_023814 ENSMUSG00000032419 Tbx18 2810012F10Rik|2810404D13Rik T-box18 0.012821 0.445860 -4.164511 chr1-1072 chr1 158837861 158838017 + 25.4 NA Intergenic Intergenic -61636 NM_023884 78255 Mm.28376 NM_001159965 ENSMUSG00000026594 Ralgps2 1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161 Ral GEF with PH domain and SH3 binding motif 2 0.012821 0.458599 -1.679075 chr1-996 chr1 106631408 106631564 + 25.4 NA intron (NM_011800, intron 1 of 11) intron (NM_011800, intron 1 of 11) 35121 NM_011800 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7|MGC141415 cadherin 20 0.000000 0.439490 -1.326195 chr9-618 chr9 52247774 52247930 + 25.4 NA Intergenic Intergenic 193972 NM_178906 330941 Mm.335160 NM_177907 ENSMUSG00000078307 AI593442 E130102D23|MGC130101 expressed sequence AI593442 0.019231 0.515924 -3.068825 chr12-739 chr12 113376557 113376713 + 25.4 NA intron (NM_010588, intron 2 of 25) intron (NM_010588, intron 2 of 25) 668 NM_010588 16450 Mm.186146 NM_010588 ENSMUSG00000002799 Jag2 D12Ggc2e|Serh|mJagged2-1|sm jagged 2 0.173077 0.802548 -5.348874 chr6-665 chr6 146917386 146917542 + 25.4 NA intron (NM_001170433, intron 2 of 27) intron (NM_001170433, intron 2 of 27) -5873 NM_028509 73344 Mm.391543 XM_001475866 ENSMUSG00000040163 1700034J05Rik - RIKEN cDNA 1700034J05 gene 0.012821 0.394904 -0.149027 chr9-735 chr9 110900290 110900446 + 25.4 NA exon (NM_017466, exon 2 of 2) exon (NM_017466, exon 2 of 2) 1718 NM_017466 54199 Mm.7336 NM_017466 ENSMUSG00000043953 Ccrl2 1810047I05Rik|CCR11|Cmkbr1l2|E01|L-CCR chemokine (C-C motif) receptor-like 2 0.038462 0.554140 -1.494515 chr9-732-Dup1 chr9 110126548 110126550 + 25.4 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA -23809 NM_001081381 72341 Mm.374250 XM_135177 ENSMUSG00000054836 2610002I17Rik 2610001P13Rik|AV159994|Tmem103 RIKEN cDNA 2610002I17 0.000000 1.000000 -10000000000.000000 chr12-654 chr12 86361212 86361368 + 25.4 NA Intergenic CpG -1713 NM_010234 14281 Mm.246513 NM_010234 ENSMUSG00000021250 Fos D12Rfj1|c-fos|cFos FBJ osteosarcoma oncogene 0.083333 0.713376 -6.197936 chr7-536 chr7 114638573 114638729 + 25.4 NA intron (NM_173767, intron 12 of 12) intron (NM_173767, intron 12 of 12) 101737 NM_173767 233752 Mm.83037 NM_173767 ENSMUSG00000048782 Insc 3830422K02Rik|C730020D23|MGC107593 inscuteable homolog (Drosophila) 0.000000 0.388535 2.537833 chr1-937 chr1 75253604 75253760 + 25.4 NA Intergenic Intergenic -4762 NM_007463 11790 Mm.275397 NM_001085370 ENSMUSG00000026207 Speg AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297 SPEG complex locus 0.012821 0.611465 -4.289730 chr3-620 chr3 129816252 129816408 + 25.4 NA TTS (NM_026578) TTS (NM_026578) -1803 NM_009102 20132 Mm.278758 NM_009102 ENSMUSG00000028012 Rrh - retinal pigment epithelium derived rhodopsin homolog 0.025641 0.509554 2.485509 chr1-922 chr1 73197934 73198090 + 25.4 NA Intergenic Intergenic 142764 NR_003202 723792 Mm.481508 NR_003202 Pinc - pregnancy induced noncoding RNA 0.012821 0.375796 1.436999 chr11-874 chr11 106605361 106605517 + 25.4 NA promoter-TSS (NM_177088) promoter-TSS (NM_177088) 98 NM_001166685 320162 Mm.441582 NM_001166685 ENSMUSG00000018372 Ccdc45 4732496G21Rik|AI118346|AI448335|D330027A14Rik|F630025I20Rik coiled-coil domain containing 45 0.102564 0.662420 -1.834345 chr11-662 chr11 7324128 7324284 + 25.4 NA Intergenic Intergenic -210280 NM_008343 16009 Mm.29254 NM_008343 ENSMUSG00000020427 Igfbp3 AI649005|IGFBP-3|IGgfbp3 insulin-like growth factor binding protein 3 0.019231 0.535032 -5.197163 chr8-591 chr8 125353058 125353214 + 25.4 NA 3' UTR (NM_001033142, exon 6 of 6) 3' UTR (NM_001033142, exon 6 of 6) -6354 NM_013914 30927 Mm.103673 NM_013914 ENSMUSG00000006587 Snai3 AI643946|Smuc|Zfp293 snail homolog 3 (Drosophila) 0.012821 0.592357 -5.046807 chr2-779 chr2 77287662 77287818 + 25.4 NA intron (NM_001113400, intron 2 of 7) intron (NM_001113400, intron 2 of 7) 32765 NM_001113400 241494 Mm.453232 NM_001113399 ENSMUSG00000027016 Zfp385b B830010L13Rik|C130013B13Rik|Zfp533|Znf385b zinc finger protein 385B 0.019231 0.401274 4.431080 chr4-764 chr4 115663195 115663351 + 25.4 NA intron (NM_133681, intron 2 of 7) intron (NM_133681, intron 2 of 7) 2257 NM_133681 66805 Mm.45994 NM_133681 ENSMUSG00000028699 Tspan1 9030418M05Rik tetraspanin 1 0.000000 0.433121 -7.593030 chr11-871 chr11 105882807 105882963 + 25.4 NA intron (NM_027346, intron 1 of 4) intron (NM_027346, intron 1 of 4) 689 NM_027346 70207 Mm.343857 NM_027346 ENSMUSG00000001983 Taco1 2310066I18Rik|Ccdc44 translational activator of mitochondrially encoded cytochrome c oxidase I 0.102564 0.528662 -4.922707 chr4-668 chr4 59956086 59956242 + 25.4 NA intron (NM_172468, intron 2 of 8) intron (NM_172468, intron 2 of 8) 52946 NM_021053 30936 Mm.284433 NM_021053 ENSMUSG00000028386 Slc46a2 5430429N04Rik|Ly110|TSO-1C12|Tscot solute carrier family 46, member 2 0.019231 0.503185 3.723897 chr3-660 chr3 157860404 157860560 + 25.4 NA promoter-TSS (NM_145953) promoter-TSS (NM_145953) -126 NM_145953 107869 Mm.28301 NM_145953 ENSMUSG00000028179 Cth 0610010I13Rik|AI314617|BC019483|Cys3|MGC28655 cystathionase (cystathionine gamma-lyase) 0.051282 0.636943 -4.776264 chr8-504 chr8 47810056 47810212 + 25.4 NA Intergenic B4|SINE|B4 -16646 NM_173789 234219 Mm.145631 NM_173789 ENSMUSG00000047171 Helt A830086M02|Hesl|Mgn|megane Hey-like transcription factor (zebrafish) 0.044872 0.566879 -4.775934 chr17-400 chr17 9213373 9213529 + 25.4 NA Intergenic Intergenic -207255 NR_027881 67791 Mm.158175 NR_027881 6530411M01Rik - RIKEN cDNA 6530411M01 gene 0.012821 0.445860 -4.676046 chr14-292 chr14 105489953 105490109 + 25.4 NA Intergenic Intergenic 498226 NM_198601 212085 Mm.452063 NM_198601 ENSMUSG00000022113 Trim52 4921513B05Rik tripartite motif-containing 52 0.012821 0.388535 -2.594601 chr13-395 chr13 43161406 43161562 + 25.4 NA Intergenic Intergenic 20847 NM_025935 67046 Mm.269213 NM_025935 ENSMUSG00000021368 Tbc1d7 2610009C09Rik TBC1 domain family, member 7 0.025641 0.477707 -3.085556 chr4-736 chr4 103842312 103842468 + 25.4 NA Intergenic Intergenic -23101 NM_010014 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled homolog 1 (Drosophila) 0.012821 0.535032 4.804853 chr4-629 chr4 40331854 40332010 + 25.4 NA promoter-TSS (NM_007386) promoter-TSS (NM_007386) -3 NM_007386 11428 Mm.331547 NM_007386 ENSMUSG00000028405 Aco1 AI256519|Aco-1|Irebp|Irp1 aconitase 1 0.051282 0.617834 -2.946849 chr11-735 chr11 60627376 60627532 + 25.4 NA promoter-TSS (NM_009171) promoter-TSS (NM_009171) 6 NM_009171 20425 Mm.364956 NM_009171 ENSMUSG00000020534 Shmt1 AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2 serine hydroxymethyltransferase 1 (soluble) 0.070513 0.681529 0.166918 chr11-796 chr11 83088027 83088183 + 25.4 NA Intergenic Intergenic 14816 NM_001166028 237890 Mm.297670 NM_001166028 Slfn14-ps Gm20|Slfn14 schlafen family member 14, pseudogene 0.012821 0.439490 -5.428996 chr8-426 chr8 3279500 3279656 + 25.4 NA promoter-TSS (NM_010568) promoter-TSS (NM_010568) 39 NM_010568 16337 Mm.268003 NM_001033381 ENSMUSG00000005534 Insr 4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B insulin receptor 0.083333 0.700637 1.291870 chr9-582 chr9 31400384 31400540 + 25.4 NA Intergenic Intergenic -186659 NM_144936 235135 Mm.390134 NM_144936 ENSMUSG00000041737 Tmem45b BC018222|MGC25912|MGC37581 transmembrane protein 45b 0.012821 0.535032 -5.014019 chr12-626 chr12 77477098 77477254 + 25.4 NA intron (NM_153804, intron 1 of 18) intron (NM_153804, intron 1 of 18) 24777 NM_153804 263406 Mm.291854 NM_153804 ENSMUSG00000052609 Plekhg3 BC030417|MGC40768 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 0.012821 0.541401 -3.784788 chr2-719 chr2 34594050 34594206 + 25.4 NA promoter-TSS (NM_022310) promoter-TSS (NM_022310) 30 NM_022310 14828 Mm.330160 NM_001163434 ENSMUSG00000026864 Hspa5 AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|mBiP heat shock protein 5 0.102564 0.636943 -6.170194 chr4-623 chr4 24587020 24587176 + 25.4 NA promoter-TSS (NM_199467) promoter-TSS (NM_199467) 7 NM_199467 212377 Mm.120919 NM_199467 ENSMUSG00000045751 F730047E07Rik Gm134 RIKEN cDNA F730047E07 gene 0.166667 0.738854 -3.949152 chr8-560 chr8 108207073 108207229 + 25.4 NA intron (NM_177449, intron 2 of 4) intron (NM_177449, intron 2 of 4) 8254 NM_177449 234684 Mm.381717 NM_177449 ENSMUSG00000041679 Lrrc29 A630024J02Rik|FBL9|FBXL9 leucine rich repeat containing 29 0.019231 0.547771 1.568114 chr8-521 chr8 71013051 71013207 + 25.4 NA Intergenic Intergenic -109566 NM_177698 234353 Mm.32525 NM_027626 ENSMUSG00000030465 Psd3 4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D|MGC6957 pleckstrin and Sec7 domain containing 3 0.012821 0.401274 1.133618 chr4-863 chr4 150895018 150895174 + 25.4 NA intron (NM_001159599, intron 7 of 11) intron (NM_001159599, intron 7 of 11) 11970 NM_001159599 74035 Mm.275803 NM_001159599 ENSMUSG00000028948 Nol9 4632412I24Rik|6030462G04Rik|AI449622|AW490720|MGC159135 nucleolar protein 9 0.006410 0.433121 -2.391629 chr13-405 chr13 48438278 48438434 + 25.4 NA Intergenic Intergenic 86991 NM_001164575 67911 Mm.251375 NM_001164575 ENSMUSG00000050954 Zfp169 1700025J14Rik|4930429A13Rik|BE688704 zinc finger protein 169 0.019231 0.439490 4.280632 chr5-767 chr5 31164610 31164766 + 25.4 NA promoter-TSS (NM_174849) promoter-TSS (NM_174849) -744 NM_174849 231093 Mm.440364 NM_001048192 ENSMUSG00000029165 Agbl5 4930455N08|9430057O19Rik|CCP5 ATP/GTP binding protein-like 5 0.064103 0.509554 2.226773 chr5-760 chr5 27464145 27464301 + 25.4 NA intron (NM_207282, intron 1 of 25) intron (NM_207282, intron 1 of 25) 84238 NM_207282 13483 Mm.42078 NM_001136060 ENSMUSG00000061576 Dpp6 B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|MGC113720|Peplb|Rw dipeptidylpeptidase 6 0.012821 0.490446 0.958023 chr8-451 chr8 13105581 13105737 + 25.4 NA promoter-TSS (NM_146207) promoter-TSS (NM_146207) -38 NM_146207 99375 Mm.212861 NM_146207 ENSMUSG00000031446 Cul4a 2810470J21Rik|AW495282|MGC36573 cullin 4A 0.153846 0.802548 -11.126439 chr14-278 chr14 76032646 76032802 + 25.4 NA intron (NM_172813, intron 2 of 18) intron (NM_172813, intron 2 of 18) 141754 NM_172813 239188 Mm.441158 NM_172813 ENSMUSG00000022012 Enox1 B230207J08|D230005D02Rik ecto-NOX disulfide-thiol exchanger 1 0.000000 0.382166 1.389711 chr4-829 chr4 139980519 139980675 + 25.4 NA intron (NM_173867, intron 3 of 12) intron (NM_173867, intron 3 of 12) 7049 NM_173867 108911 Mm.253 NM_173867 ENSMUSG00000040945 Rcc2 2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470 regulator of chromosome condensation 2 0.019231 0.522293 -3.963177 chr12-683 chr12 99907376 99907532 + 25.4 NA Intergenic Intergenic -56330 NM_183186 71375 Mm.480620 XM_001473733 ENSMUSG00000033713 Foxn3 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1|MGC107530|MGC36260 forkhead box N3 0.000000 0.547771 -4.351680 chr5-854 chr5 89839651 89839807 + 25.4 NA 5' UTR (NM_007832, exon 1 of 7) 5' UTR (NM_007832, exon 1 of 7) 156 NM_007832 13178 Mm.298892 NM_007832 ENSMUSG00000029366 Dck - deoxycytidine kinase 0.147436 0.726115 -3.577752 chr18-354 chr18 61844652 61844808 + 25.4 NA intron (NM_021296, intron 2 of 3) intron (NM_021296, intron 2 of 3) 6970 NM_021296 17714 Mm.269657 NM_021296 ENSMUSG00000024580 Grpel2 mt-GrpE#2|mt-Grpel2 GrpE-like 2, mitochondrial 0.012821 0.464968 -5.883871 chr9-734 chr9 110528975 110529131 + 25.4 NA intron (NM_028312, intron 1 of 6) intron (NM_028312, intron 1 of 6) 27735 NM_028312 72654 Mm.249115 NM_028312 ENSMUSG00000019659 Ccdc12 2700094L05Rik|C76605 coiled-coil domain containing 12 0.000000 0.509554 -2.144113 chr11-866 chr11 104254313 104254469 + 25.4 NA intron (NM_001081045, intron 1 of 13) intron (NM_001081045, intron 1 of 13) 3990 NM_001081045 76719 Mm.136418 NM_001081045 ENSMUSG00000018412 1700081L11Rik 9430041J06Rik|KIAA1267|MGC90742|mKIAA1267 RIKEN cDNA 1700081L11 gene 0.000000 0.343949 -3.424620 chr11-925 chr11 121075858 121076014 + 25.4 NA promoter-TSS (NM_001080932) promoter-TSS (NM_001080932) -140 NM_001080932 68837 Mm.209750 NM_001080932 ENSMUSG00000039275 Foxk2 1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1 forkhead box K2 0.198718 0.777070 -11.741236 chr17-451 chr17 28425092 28425248 + 25.4 NA intron (NM_001168514, intron 2 of 12) intron (NM_001168514, intron 2 of 12) 5014 NM_001168513 26416 Mm.311337 NM_001168508 ENSMUSG00000053436 Mapk14 CSBP2|Crk1|Csbp1|MGC102436|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha mitogen-activated protein kinase 14 0.000000 0.394904 -0.452408 chr6-652 chr6 129442196 129442352 + 25.4 NA Intergenic Intergenic -3804 NM_020008 56644 Mm.239516 NM_020008 ENSMUSG00000079293 Clec7a BGR|Clecsf12|beta-GR C-type lectin domain family 7, member a 0.012821 0.458599 -2.917351 chr6-610 chr6 101181101 101181257 + 25.4 NA intron (NM_018884, intron 3 of 9) intron (NM_018884, intron 3 of 9) 162816 NM_018884 55983 Mm.321654 NM_018884 ENSMUSG00000035357 Pdzrn3 1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3 PDZ domain containing RING finger 3 0.006410 0.369427 -2.243484 chr15-338 chr15 33257255 33257411 + 25.4 NA intron (NM_018755, intron 5 of 8) intron (NM_018755, intron 5 of 8) 93195 NR_033608 73486 NR_033608 1700084J12Rik - RIKEN cDNA 1700084J12 gene 0.006410 0.369427 -1.340217 chr2-877 chr2 160665749 160665905 + 25.4 NA intron (NM_173368, intron 27 of 36) intron (NM_173368, intron 27 of 36) -62058 NM_182840 280635 Mm.330747 NM_182840 ENSMUSG00000050700 Emilin3 1110013O17Rik|EMILIN-T|Emilin5 elastin microfibril interfacer 3 0.006410 0.458599 2.316741 chr10-598 chr10 128129194 128129350 + 25.4 NA intron (NM_016811, intron 17 of 23) intron (NM_016811, intron 17 of 23) 17733 NM_016811 13139 Mm.291235 XM_001475744 ENSMUSG00000025357 Dgka 80kDa|AW146112|Dagk1 diacylglycerol kinase, alpha 0.006410 0.433121 -8.787425 chr17-415 chr17 12603069 12603225 + 25.4 NA intron (NM_010515, intron 1 of 47) intron (NM_010515, intron 1 of 47) 9917 NM_010515 16004 Mm.26553 NM_010515 ENSMUSG00000023830 Igf2r AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300 insulin-like growth factor 2 receptor 0.019231 0.541401 3.162755 chr5-907 chr5 112496858 112497014 + 25.4 NA intron (NM_023695, intron 1 of 5) intron (NM_023695, intron 1 of 5) 813 NM_023695 12960 Mm.29488 NM_023695 ENSMUSG00000029343 Crybb1 3110006K12Rik|BB1CRY crystallin, beta B1 0.025641 0.579618 -2.948136 chr9-561 chr9 21546748 21546904 + 25.4 NA intron (NM_145611, intron 1 of 11) intron (NM_145611, intron 1 of 11) 2122 NM_145611 235041 Mm.257371 NM_145611 ENSMUSG00000032194 Kank2 AI504612|Ankrd25|BC010245|MGC12143|MGC7734 KN motif and ankyrin repeat domains 2 0.000000 0.605096 1.018312 chr9-601 chr9 46182271 46182427 + 25.4 NA Intergenic Intergenic -111368 NM_183104 74361 Mm.480176 XM_001479570 ENSMUSG00000056617 4931429L15Rik - RIKEN cDNA 4931429L15 gene 0.019231 0.592357 0.712203 chr2-920 chr2 178725414 178725570 + 25.4 NA Intergenic Intergenic 365478 NM_198656 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010|MGC56946 cadherin-like 26 0.000000 0.484076 -2.528917 chr3-578 chr3 103938328 103938484 + 25.4 NA promoter-TSS (NM_026193) promoter-TSS (NM_026193) 42 NM_133865 140917 Mm.374850 NM_001025312 ENSMUSG00000027845 Dclre1b AI452214|Apollo|SNMIB|mSNM1B DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) 0.121795 0.643312 -7.948574 chr6-493 chr6 39894654 39894810 + 25.4 NA Intergenic Intergenic -145127 NM_001004182 434008 Mm.130209 NM_001004182 ENSMUSG00000057716 Gm5567 EG434008 predicted gene 5567 0.019231 0.471338 2.926080 chr10-560 chr10 95716329 95716485 + 25.4 NA Intergenic Intergenic -330281 NM_007569 12226 Mm.23811 NM_007569 ENSMUSG00000036478 Btg1 AI426953|AW546738 B-cell translocation gene 1, anti-proliferative 0.019231 0.426752 -3.318273 chr4-856 chr4 149972475 149972631 + 25.4 NA intron (NM_001166021, intron 10 of 22) intron (NM_001166021, intron 10 of 22) -70800 NM_009498 22319 Mm.273930 NM_009498 ENSMUSG00000028955 Vamp3 D130027G05Rik|VAMP-3|ceb vesicle-associated membrane protein 3 0.089744 0.624204 1.283864 chr17-434 chr17 26099247 26099403 + 25.4 NA Intergenic Intergenic -43239 NM_001081656 240055 Mm.390976 NM_001081656 ENSMUSG00000034413 Neurl1B C230078M08Rik|EG240055|MGC183766|MGC183777 neuralized homolog 1B (Drosophila) 0.006410 0.541401 -4.533712 chr17-461 chr17 30087759 30087915 + 25.4 NA intron (NM_027060, intron 6 of 10) intron (NM_027060, intron 6 of 10) 35355 NR_030688 623169 Mm.440508 XM_892956 Gm6402 EG623169 ribosomal protein S17 pseudogene 0.000000 0.426752 -2.062128 chr6-592 chr6 94833431 94833587 + 25.4 NA Intergenic Intergenic -167901 NM_008377 16206 Mm.245210 NM_008377 ENSMUSG00000030029 Lrig1 D6Bwg0781e|Img|LIG-1 leucine-rich repeats and immunoglobulin-like domains 1 0.012821 0.515924 0.888854 chr5-837 chr5 75014324 75014480 + 25.4 NA Intergenic MER82|DNA|MER2_type -29802 NM_001159577 16924 Mm.440403 NM_001159577 ENSMUSG00000029228 Lnx1 Lnx ligand of numb-protein X 1 0.025641 0.522293 -4.496294 chr10-565 chr10 99913983 99914139 + 25.4 NA intron (NM_001033332, intron 1 of 12) intron (NM_001033332, intron 1 of 12) 2974 NM_001033332 237500 Mm.296805 NM_001033332 ENSMUSG00000036676 Tmtc3 9130014E20Rik|B130008E12Rik transmembrane and tetratricopeptide repeat containing 3 0.025641 0.439490 2.936821 chr4-661 chr4 57217309 57217465 + 25.4 NA intron (NM_019427, intron 1 of 15) intron (NM_019427, intron 1 of 15) 19823 NM_019427 54357 Mm.381403 XM_001476161 ENSMUSG00000028434 Epb4.1l4b 6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb41l4b erythrocyte protein band 4.1-like 4b 0.038462 0.560510 -0.618702 chr2-927 chr2 180157208 180157364 + 25.4 NA Intergenic Intergenic -2019 NM_001081171 16776 Mm.4339 NM_001081171 ENSMUSG00000015647 Lama5 AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533 laminin, alpha 5 0.038462 0.624204 -1.642513 chr4-716 chr4 92093829 92093985 + 25.4 NA Intergenic Intergenic -454668 NM_027034 69314 Mm.55891 XM_131510 ENSMUSG00000028533 Izumo3 1700011H22Rik IZUMO family member 3 0.000000 0.331210 0.898446 chr7-486 chr7 89898654 89898810 + 25.4 NA Intergenic Intergenic -5618 NR_015614 319711 Mm.31753 XM_001473432 E230029C05Rik AI452102|B230337J15 RIKEN cDNA E230029C05 gene 0.006410 0.445860 1.523008 chrUn_random-2 chrUn_random 825641 825797 + 25.4 NA Intergenic Intergenic -1466 NM_001008551 434632 Mm.443452 NM_001008551 BC085271 MGC103372 cDNA sequence BC085271 NA NA chr8-488 chr8 37436495 37436651 + 25.4 NA Intergenic Charlie5|DNA|MER1_type -126771 NM_172911 244418 Mm.244971 NM_172911 ENSMUSG00000050271 D8Ertd82e 9830148H23|FLJ00269|MGC100334|Sgk223|mFLJ00269 DNA segment, Chr 8, ERATO Doi 82, expressed 0.006410 0.324841 -6.547895 chr4-638 chr4 44183469 44183625 + 25.4 NA intron (NM_001038993, intron 1 of 11) intron (NM_001038993, intron 1 of 11) 5091 NM_175201 73469 Mm.262859 NM_001038993 ENSMUSG00000035696 Rnf38 1700065B19Rik|2610202O07Rik|AA673263|Oip1 ring finger protein 38 0.012821 0.433121 -0.370920 chr5-1022 chr5 144948929 144949085 + 25.4 NA Intergenic Intergenic 66098 NM_177735 243339 Mm.126793 NM_177735 ENSMUSG00000043388 Tmem130 BC067004|C130036G08|MGC157450|MGC157451 transmembrane protein 130 0.012821 0.547771 -1.762673 chr10-567 chr10 107433820 107433976 + 25.4 NA Intergenic L1_Mur1|LINE|L1 -117654 NM_001177567 628870 Mm.336090 XM_001478590 Gm6924 EG628870 predicted gene 6924 0.012821 0.363057 -3.051096 chr4-851 chr4 148736691 148736847 + 25.4 NA Intergenic Intergenic 62037 NM_029035 74646 Mm.30 NM_029035 ENSMUSG00000039911 Spsb1 1110014L01Rik|4930422J18Rik|AI596360|AI854583|MGC102221|SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 0.006410 0.522293 -6.957224 chr1-1059 chr1 153065534 153065690 + 25.4 NA Intergenic Intergenic -41103 NM_001039512 117198 Mm.33764 NM_001039511 ENSMUSG00000023150 Ivns1abp 1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850 influenza virus NS1A binding protein 0.000000 0.464968 4.438236 chr7-543 chr7 117286281 117286437 + 25.4 NA intron (NM_175645, intron 2 of 11) intron (NM_175645, intron 2 of 11) 114232 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.025641 0.471338 -2.540595 chr13-400 chr13 45273062 45273218 + 25.4 NA Intergenic Intergenic -127573 NM_153789 218203 Mm.481228 NM_153789 ENSMUSG00000038175 Mylip 9430057C20Rik|MGC11702|Mir myosin regulatory light chain interacting protein 0.006410 0.535032 -1.644711 chr10-579 chr10 120039307 120039463 + 25.4 NA Intergenic Intergenic -159390 NM_010441 15364 Mm.157190 NM_010441 ENSMUSG00000056758 Hmga2 9430083A20Rik|HMGI-C|Hmgic|MGC103393|pg|pygmy high mobility group AT-hook 2 0.012821 0.535032 -0.885274 chr11-635 chr11 3001683 3001839 + 25.4 NA Intergenic GSAT_MM|Satellite|Satellite -22262 NR_003517 236604 Mm.247625 XM_001471470 Pisd-ps1 - phosphatidylserine decarboxylase, pseudogene 1 0.051282 0.420382 -3.701686 chr3-515 chr3 58341404 58341560 + 25.4 NA Intergenic Intergenic -162135 NM_001081229 72033 Mm.218409 NM_001081229 ENSMUSG00000027806 Tsc22d2 1810043J12Rik|5530402M19Rik TSC22 domain family, member 2 0.000000 0.496815 -10.518958 chr10-573 chr10 111948766 111948922 + 25.4 NA Intergenic Lx7|LINE|L1 273612 NM_001025581 268345 Mm.336242 NM_001025581 ENSMUSG00000035681 Kcnc2 AW047325|B230117I07|KShIIIA|Kv3.2 potassium voltage gated channel, Shaw-related subfamily, member 2 0.006410 0.439490 -9.399684 chr15-322 chr15 27203742 27203898 + 25.4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -207581 NM_020332 11732 Mm.265264 NM_020332 ENSMUSG00000022265 Ank Ankh|D15Ertd221e|ank|mKIAA1581 progressive ankylosis 0.000000 0.382166 -5.346276 chr2-914 chr2 174295738 174295894 + 25.4 NA intron (NM_001099328, intron 2 of 4) intron (NM_001099328, intron 2 of 4) 9344 NM_001099328 100043757 Mm.48711 XM_001480903 ENSMUSG00000050600 Zfp831 ENSMUSG00000050600|OTTMUSG00000017459|Rp23-45p4.1 zinc finger protein 831 0.006410 0.464968 -7.770581 chr12-559 chr12 39289711 39289867 + 25.4 NA promoter-TSS (NM_007960) promoter-TSS (NM_007960) -891 NM_007960 14009 Mm.4866 NM_001163154 ENSMUSG00000004151 Etv1 ER81|Etsrp81 ets variant gene 1 0.019231 0.579618 -4.130243 chr12-567 chr12 40643908 40644064 + 25.4 NA intron (NM_001146196, intron 1 of 15) intron (NM_001146196, intron 1 of 15) 665 NM_001146196 20259 Mm.2416 NM_001146196 ENSMUSG00000002565 Scin AW545522|adseverin scinderin 0.025641 0.484076 0.792495 chr13-428 chr13 57754543 57754699 + 25.4 NA intron (NM_001166464, intron 2 of 10) intron (NM_001166464, intron 2 of 10) 163334 NM_009262 20745 Mm.379020 NM_001166463 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 0.000000 0.535032 -1.973318 chr4-839 chr4 142701351 142701507 + 25.4 NA Intergenic Intergenic 15560 NM_173773 242737 Mm.148643 NM_173773 ENSMUSG00000047799 Oog4 E330017M15 oogenesin 4 0.012821 0.515924 -3.890676 chr5-830 chr5 67539879 67540035 + 25.4 NA intron (NM_028975, intron 1 of 7) intron (NM_028975, intron 1 of 7) 171 NM_030108 67878 Mm.23217 NM_028975 ENSMUSG00000037720 Tmem33 1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83 transmembrane protein 33 0.089744 0.668790 1.562426 chr15-358 chr15 43605659 43605815 + 25.4 NA Intergenic Intergenic 94366 NM_175502 239408 Mm.461451 NM_175502 ENSMUSG00000054409 Tmem74 AA549547|B230382K22Rik transmembrane protein 74 0.000000 0.464968 -3.487200 chr3-506 chr3 51976861 51977017 + 25.4 NA intron (NM_001004176, intron 1 of 4) intron (NM_001004176, intron 1 of 4) 215996 NM_001004176 433586 Mm.481431 NM_001004176 ENSMUSG00000061143 Maml3 AV234550|BC049812|KIAA1816|MGC59565|Mam-2|mKIAA1816 mastermind like 3 (Drosophila) 0.025641 0.477707 -1.672030 chr15-447 chr15 103005213 103005369 + 25.4 NA Intergenic Intergenic -13973 NM_027885 71726 Mm.463445 NM_027885 ENSMUSG00000036061 Smug1 1200013B09Rik|A930006H09Rik|C85220 single-strand selective monofunctional uracil DNA glycosylase 0.032051 0.636943 -5.914097 chr4-693 chr4 82762166 82762322 + 25.4 NA intron (NM_027238, intron 2 of 19) intron (NM_027238, intron 2 of 19) 33176 NM_027238 69863 Mm.5540 NM_027238 ENSMUSG00000038172 Ttc39b 1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585 tetratricopeptide repeat domain 39B 0.019231 0.452229 3.586477 chr13-435 chr13 60345874 60346030 + 25.4 NA Intergenic Intergenic 130859 NR_036449 328264 Mm.38101 NM_177810 ENSMUSG00000050765 Gm5084 A030007L22|EG328264 predicted gene 5084 0.000000 0.522293 -0.573136 chr5-999 chr5 139617925 139618081 + 25.4 NA intron (NM_028469, intron 2 of 4) intron (NM_028469, intron 2 of 4) 5384 NR_029768 723898 NR_029768 Mir339 Mirn339|mmu-mir-339 microRNA 339 0.006410 0.560510 1.278453 chr8-573 chr8 122444594 122444750 + 25.4 NA promoter-TSS (NM_019709) promoter-TSS (NM_019709) 66 NM_001167910 56453 Mm.206934 NM_001167910 ENSMUSG00000031835 Mbtps1 0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091 membrane-bound transcription factor peptidase, site 1 0.166667 0.726115 -6.470536 chr17-518 chr17 55630033 55630189 + 25.4 NA promoter-TSS (NM_013664) promoter-TSS (NM_013664) -242 NM_013664 20405 Mm.1773 NM_013664 ENSMUSG00000003200 Sh3gl1 C77078|EEN|SH3P8|Sh3d2b SH3-domain GRB2-like 1 0.057692 0.560510 -3.733800 chr8-524 chr8 72800921 72801077 + 25.4 NA exon (NM_001024954, exon 8 of 8) exon (NM_001024954, exon 8 of 8) 15382 NM_026818 68709 Mm.334584 NM_026818 ENSMUSG00000044006 Cilp2 1110031K21Rik|AA407300|CLIP-2 cartilage intermediate layer protein 2 0.012821 0.541401 -4.842651 chr10-468 chr10 43239521 43239677 + 25.4 NA Intergenic Intergenic -10190 NM_026411 67851 Mm.209953 NM_026411 ENSMUSG00000019797 1700021F05Rik - RIKEN cDNA 1700021F05 gene 0.006410 0.477707 -2.206244 chr12-649 chr12 83405729 83405885 + 25.4 NA Intergenic Intergenic -130078 NM_015812 50779 Mm.153013 NM_015812 ENSMUSG00000021219 Rgs6 - regulator of G-protein signaling 6 0.000000 0.433121 -0.400395 chr7-614 chr7 145109709 145109865 + 25.4 NA promoter-TSS (NM_145379) promoter-TSS (NM_145379) -511 NM_145379 211577 Mm.215151 NM_145379 ENSMUSG00000031070 Mrgprf BC019711|MGC18825|MrgF MAS-related GPR, member F 0.006410 0.522293 -1.967559 chr13-417 chr13 53793413 53793569 + 25.4 NA Intergenic Intergenic 271788 NM_010076 13488 Mm.54161 NM_010076 ENSMUSG00000021478 Drd1a C030036C15Rik|Drd-1|Drd1|Gpcr15 dopamine receptor D1A 0.012821 0.496815 -1.171425 chr13-369 chr13 24808219 24808375 + 25.4 NA promoter-TSS (NM_024473) promoter-TSS (NM_024473) -824 NM_024473 79555 Mm.266668 NM_024473 ENSMUSG00000019132 BC005537 8030460C05Rik|C78201|MGC7474 cDNA sequence BC005537 0.057692 0.598726 -3.020188 chr6-505 chr6 49917099 49917255 + 25.4 NA Intergenic L1MD1|LINE|L1 -122649 NM_019939 56524 Mm.478422 NM_001164733 ENSMUSG00000038388 Mpp6 P55t|Pals2 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) 0.006410 0.445860 2.770025 chr4-821 chr4 137193645 137193801 + 25.4 NA intron (NM_199307, intron 4 of 19) intron (NM_199307, intron 4 of 19) 59411 NM_199307 230857 Mm.439998 NM_199307 ENSMUSG00000057530 Ece1 AW322500|ECE-1a|ECE-1b|ECE-1d endothelin converting enzyme 1 0.032051 0.535032 -8.378720 chr4-767 chr4 117413092 117413248 + 25.4 NA promoter-TSS (NM_146152) promoter-TSS (NM_146152) -239 NM_146152 230673 Mm.287810 NM_146152 ENSMUSG00000033365 Ipo13 Imp13|Kap13|MGC18698|Ranbp13 importin 13 0.089744 0.643312 -0.482252 chr16-307 chr16 14968334 14968490 + 25.4 NA Intergenic Intergenic 148189 NM_025769 66793 Mm.100270 NM_025769 ENSMUSG00000068617 Efcab1 4930449A16Rik|5430404L10Rik EF hand calcium binding domain 1 0.006410 0.515924 1.179224 chr17-560 chr17 86063658 86063814 + 25.4 NA Intergenic Intergenic -10235 NM_030133 78586 Mm.146236 XM_001479682 ENSMUSG00000024135 Srbd1 AI461933|C85414|D530025C17Rik|MGC117756|MGC198776 S1 RNA binding domain 1 0.006410 0.464968 2.431796 chr5-1032 chr5 148794642 148794798 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 68417 NM_011908 24109 Mm.21846 NM_011908 ENSMUSG00000001687 Ubl3 AW108023|HCG ubiquitin-like 3 0.000000 0.363057 -8.386509 chr2-785 chr2 84451435 84451591 + 25.4 NA promoter-TSS (NM_001085453) promoter-TSS (NM_001085453) 66 NM_001085449 12388 Mm.35738 NM_001085448 ENSMUSG00000034101 Ctnnd1 AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384 catenin (cadherin associated protein), delta 1 0.000000 0.547771 -1.549595 chr6-553 chr6 83874607 83874763 + 25.4 NA Intergenic B3A|SINE|B2 -5325 NM_001166371 18139 Mm.132392 NM_001166371 ENSMUSG00000030016 Zfml AI323587|Np220|Znf638|mNP220 zinc finger, matrin-like 0.012821 0.452229 0.222274 chr15-390 chr15 75809097 75809253 + 25.4 NA exon (NM_001163518, exon 1 of 1) exon (NM_001163518, exon 1 of 1) 365 NM_146059 223648 Mm.17610 NM_001163518 2410075B13Rik MGC37569 RIKEN cDNA 2410075B13 gene 0.147436 0.675159 -3.081855 chr16-356 chr16 56178965 56179121 + 25.4 NA intron (NM_174876, intron 11 of 19) intron (NM_174876, intron 11 of 19) 49780 NM_174876 224224 Mm.151998 NM_174876 ENSMUSG00000035270 Impg2 IPM200|PG10.2|Rsbp|Spacrcan interphotoreceptor matrix proteoglycan 2 0.006410 0.433121 5.392265 chr14-243 chr14 33232172 33232328 + 25.4 NA exon (NM_153127, exon 7 of 7) exon (NM_153127, exon 7 of 7) 27655 NM_153127 105450 Mm.272673 NM_153127 ENSMUSG00000041445 Mmrn2 AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1|MGC41271 multimerin 2 0.025641 0.554140 -5.023257 chr5-992 chr5 137844901 137845057 + 25.4 NA intron (NM_027708, intron 8 of 9) intron (NM_027708, intron 8 of 9) -3787 NM_008788 18542 Mm.262345 NM_008788 ENSMUSG00000029718 Pcolce P14|PCPE-1 procollagen C-endopeptidase enhancer protein 0.006410 0.343949 3.496862 chr17-540 chr17 66011045 66011201 + 25.4 NA promoter-TSS (NM_001037757) promoter-TSS (NM_001037757) 35 NM_026833 68767 Mm.296545 NM_001037757 ENSMUSG00000024101 ORF19 1110049F14Rik|Wash1 open reading frame 19 0.089744 0.700637 -4.515959 chr5-902 chr5 110724851 110725007 + 25.4 NA Intergenic Intergenic -36124 NM_001142642 381668 Mm.472278 NM_001142642 ENSMUSG00000043323 Fbrsl1 2410025L10Rik|AI467568|Gm1049|mKIAA1545 fibrosin-like 1 0.019231 0.484076 -2.832565 chr15-405 chr15 82776160 82776316 + 25.4 NA Intergenic Intergenic -36338 NM_013836 21411 Mm.252156 NM_001114140 ENSMUSG00000041852 Tcf20 2810438H08Rik|SPBP|mKIAA0292 transcription factor 20 0.000000 0.547771 -3.607271 chr13-383 chr13 34091621 34091777 + 25.4 NA Intergenic Intergenic -6226 NM_009450 22151 Mm.469917 NM_009450 ENSMUSG00000058672 Tubb2a M(beta)2|Tubb2 tubulin, beta 2A 0.025641 0.464968 -5.970067 chr5-968 chr5 130172185 130172341 + 25.4 NA promoter-TSS (NM_024166) promoter-TSS (NM_024166) -90 NM_024166 14004 Mm.299062 NM_024166 ENSMUSG00000070493 Chchd2 AL033347|Etohi6|MGC103085 coiled-coil-helix-coiled-coil-helix domain containing 2 0.025641 0.503185 -6.044297 chr12-632 chr12 79840351 79840507 + 25.4 NA Intergenic Intergenic -14651 NM_013738 27260 Mm.103380 NM_013738 ENSMUSG00000021118 Plek2 - pleckstrin 2 0.012821 0.496815 1.623959 chr2-744 chr2 59238905 59239061 + 25.4 NA Intergenic Intergenic -46508 NM_029723 76747 Mm.275769 NM_029723 ENSMUSG00000026989 Dapl1 2310032F03Rik|EEDA death associated protein-like 1 0.019231 0.509554 -7.869937 chr17-478 chr17 34729253 34729409 + 25.4 NA promoter-TSS (NM_001128597) promoter-TSS (NM_001128597) 172 NM_009975 13001 Mm.378901 NM_009975 ENSMUSG00000024387 Csnk2b - casein kinase 2, beta polypeptide 0.083333 0.630573 2.909232 chr8-513 chr8 60412432 60412588 + 25.4 NA Intergenic Intergenic 8526 NM_008252 97165 Mm.470487 NM_008252 ENSMUSG00000054717 Hmgb2 C80539|HMG-2|Hmg2|MGC103184 high mobility group box 2 0.006410 0.407643 -5.725527 chr6-536 chr6 68179416 68179572 + 25.4 NA Intergenic RLTR3_Mm-int|LTR|ERVK -684217 NR_003100 75070 Mm.463364 NR_003100 4930515G16Rik - myc induced nuclear antigen pseudogene 0.012821 0.433121 -6.452373 chr13-495 chr13 113513559 113513715 + 25.4 NA Intergenic Intergenic -71310 NM_010560 16195 Mm.4364 NM_010560 ENSMUSG00000021756 Il6st 5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130 interleukin 6 signal transducer 0.019231 0.496815 -0.692720 chr8-555 chr8 97863721 97863877 + 25.4 NA Intergenic Intergenic -9932 NM_018882 14766 Mm.290834 NM_018882 ENSMUSG00000031785 Gpr56 Cyt28|TM7LN4|TM7XN1 G protein-coupled receptor 56 0.006410 0.509554 -5.508321 chr13-384 chr13 34473522 34473678 + 25.4 NA Intergenic Intergenic -120953 NM_001033167 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik solute carrier family 22, member 23 0.000000 0.496815 -3.706521 chr12-571 chr12 45813563 45813719 + 25.4 NA intron (NM_144552, intron 2 of 5) intron (NM_144552, intron 2 of 5) 131128 NM_144552 217517 Mm.285400 NM_144552 ENSMUSG00000046314 Stxbp6 BC024598|C85317|MGC30948 syntaxin binding protein 6 (amisyn) 0.006410 0.484076 -2.496032 chr5-746 chr5 15361998 15362154 + 25.4 NA Intergenic Intergenic -84438 NM_001110843 12293 Mm.159842 NM_001110843 ENSMUSG00000040118 Cacna2d1 Cacna2|Cchl2a|MGC141430 calcium channel, voltage-dependent, alpha2/delta subunit 1 0.012821 0.464968 -1.059678 chr2-855 chr2 144060667 144060823 + 25.4 NA intron (NM_001164813, intron 1 of 1) intron (NM_001164813, intron 1 of 1) 270 NM_181417 228714 Mm.227925 NM_001166640 ENSMUSG00000027425 Csrp2bp 2510008M08Rik|ATAC2|AU023459|D2Ertd473e|D2Wsu131e|E430020F17 cysteine and glycine-rich protein 2 binding protein 0.064103 0.681529 1.436034 chr19-186 chr19 3985393 3985549 + 25.4 NA Intergenic Intergenic -1189 NM_027857 71670 Mm.29735 NM_027857 ENSMUSG00000024866 Acy3 0610006H10Rik|AA3|AW107362|Acy-3|HCBP1 aspartoacylase (aminoacylase) 3 0.012821 0.503185 -0.289202 chr7-478 chr7 81748235 81748391 + 25.4 NA intron (NM_145375, intron 7 of 9) intron (NM_145375, intron 7 of 9) 15779 NM_145375 107769 Mm.392934 NM_145375 ENSMUSG00000038623 Tm6sf1 AI428514|BC023123|C630016D09Rik|MGC25583 transmembrane 6 superfamily member 1 0.012821 0.503185 -0.277390 chr3-613 chr3 127155910 127156066 + 25.4 NA Intergenic Intergenic -165514 NM_178655 109676 Mm.461850 NM_001034168 ENSMUSG00000032826 Ank2 AI835472|AW491075|Ank-2 ankyrin 2, brain 0.000000 0.452229 9.573412 chr5-891 chr5 107881755 107881911 + 25.4 NA intron (NM_144911, intron 11 of 12) intron (NM_144911, intron 11 of 12) -43643 NM_001161738 170823 Mm.41417 NM_001161738 ENSMUSG00000029276 Glmn 9330160J16Rik|AW227515|Fap48|Fap68|MGC6885 glomulin, FKBP associated protein 0.012821 0.420382 -0.595267 chr11-693 chr11 30772615 30772771 + 25.4 NA intron (NM_134013, intron 43 of 46) intron (NM_134013, intron 43 of 46) -18403 NM_175490 237716 Mm.338361 NM_175490 ENSMUSG00000043999 Gpr75 - G protein-coupled receptor 75 0.000000 0.433121 0.827657 chr2-712 chr2 32669307 32669463 + 25.4 NA promoter-TSS (NM_009295) promoter-TSS (NM_009295) -139 NM_001113569 20910 Mm.278865 NM_001113569 ENSMUSG00000026797 Stxbp1 AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1 syntaxin binding protein 1 0.141026 0.751592 -3.655689 chr12-706 chr12 106865880 106866036 + 25.4 NA Intergenic Intergenic 251416 NR_015512 71033 Mm.159404 NR_015512 4933406K04Rik 4930426M03Rik|4930485I22Rik|4933427G14Rik RIKEN cDNA 4933406K04 gene 0.032051 0.433121 -0.443934 chr8-509 chr8 49173046 49173202 + 25.4 NA intron (NM_023503, intron 1 of 1) intron (NM_023503, intron 1 of 1) 852 NM_023503 69260 Mm.430733 NM_023503 ENSMUSG00000063049 Ing2 2810011M06Rik|Ing1l|Ing2b|P33ING2 inhibitor of growth family, member 2 0.115385 0.687898 2.485509 chr3-497 chr3 33240077 33240233 + 25.4 NA intron (NM_001163516, intron 1 of 12) intron (NM_001163516, intron 1 of 12) 34430 NM_021483 58869 Mm.151332 NM_001163516 ENSMUSG00000027674 Pex5l 1700016J08Rik|PXR2|Pex2|TRIP8b peroxisomal biogenesis factor 5-like 0.000000 0.458599 -5.141172 chr10-455 chr10 23380680 23380836 + 25.4 NA Intergenic Intergenic 95867 NM_011295 20042 Mm.480393 NM_011295 ENSMUSG00000061983 Rps12 MGC102111|MGC102112|MGC102499|MGC117504 ribosomal protein S12 0.012821 0.420382 7.094373 chr2-870 chr2 155209429 155209585 + 25.4 NA promoter-TSS (NM_019811) promoter-TSS (NM_019811) 24 NM_019811 60525 Mm.255026 NM_019811 ENSMUSG00000027605 Acss2 1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1 acyl-CoA synthetase short-chain family member 2 0.108974 0.700637 0.058971 chr8-446 chr8 12036403 12036559 + 25.4 NA Intergenic Intergenic 195989 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.012821 0.522293 -4.141171 chr15-418 chr15 90884583 90884739 + 25.4 NA Intergenic Intergenic -6946 NM_001109042 16564 Mm.481341 NM_001109040 ENSMUSG00000022629 Kif21a AI850764|mKIAA1708 kinesin family member 21A 0.012821 0.426752 1.434058 chr2-803 chr2 94250540 94250696 + 25.4 NA Intergenic Intergenic -11632 NM_007466 11800 Mm.461738 NM_007466 ENSMUSG00000027193 Api5 AAC-11|AI196452 apoptosis inhibitor 5 0.032051 0.388535 1.418855 chr3-510 chr3 54775261 54775417 + 25.4 NA Intergenic Intergenic -5694 NM_019995 56790 Mm.37356 NM_019995 ENSMUSG00000027751 Fam48a AA667204|AI450544|D3Ertd300e|p38IP family with sequence similarity 48, member A 0.000000 0.420382 -6.781577 chr5-1018 chr5 142803553 142803709 + 25.4 NA promoter-TSS (NM_178702) promoter-TSS (NM_178702) -80 NM_178702 231858 Mm.33766 NM_178702 ENSMUSG00000029576 Radil AI536456|D930005D10Rik Ras association and DIL domains 0.089744 0.681529 -9.300233 chr3-525 chr3 70638648 70638804 + 25.4 NA Intergenic Lx|LINE|L1 543185 NM_001018031 229389 Mm.331071 NM_001018031 ENSMUSG00000027788 Gm414 Otol1 predicted gene 414 0.012821 0.356688 -3.307542 chr7-539 chr7 116897373 116897529 + 25.4 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -274676 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 0.000000 0.407643 0.522820 chr7-563 chr7 126777648 126777804 + 25.4 NA TTS (NM_080638) TTS (NM_080638) 10191 NM_138754 52858 Mm.28219 NM_026638 ENSMUSG00000030682 Cdipt 9530042F15Rik|D7Bwg0575e|Pis|Pis1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) 0.025641 0.605096 -3.208441 chr3-627 chr3 136932418 136932574 + 25.4 NA Intergenic Intergenic 324340 NM_008913 19055 Mm.331389 NM_008913 ENSMUSG00000028161 Ppp3ca 2900074D19Rik|AI841391|AW413465|CN|Caln|Calna|CnA|MGC106804 protein phosphatase 3, catalytic subunit, alpha isoform 0.000000 0.414013 2.051664 chr13-410 chr13 49664740 49664896 + 25.4 NA promoter-TSS (NM_025495) promoter-TSS (NM_025495) -150 NM_025495 66336 Mm.440323 NM_025495 ENSMUSG00000021391 Cenpp 1700022C02Rik|4921518G09Rik centromere protein P 0.147436 0.687898 -8.816360 chr1-963 chr1 82037640 82037796 + 25.4 NA Intergenic Intergenic 132745 NM_010570 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 insulin receptor substrate 1 0.012821 0.464968 -4.970627 chr5-785 chr5 36690339 36690495 + 25.4 NA intron (NM_030889, intron 1 of 26) intron (NM_030889, intron 1 of 26) 24817 NM_030889 81840 Mm.34113 NM_030889 ENSMUSG00000029093 Sorcs2 N28137|mKIAA1329 sortilin-related VPS10 domain containing receptor 2 0.006410 0.535032 -9.138112 chr1-891 chr1 61146791 61146947 + 25.4 NA Intergenic Intergenic 224410 NM_017480 54167 Mm.42044 NM_017480 ENSMUSG00000026009 Icos AILIM|H4|Ly115 inducible T-cell co-stimulator 0.012821 0.515924 -0.944089 chr16-325 chr16 28590904 28591060 + 25.4 NA intron (NM_010199, intron 2 of 5) intron (NM_010199, intron 2 of 5) -75727 NR_030463 751543 NR_030463 Mir690 Mirn690|mmu-mir-690 microRNA 690 0.012821 0.464968 -3.294933 chr6-563 chr6 86814755 86814911 + 25.4 NA promoter-TSS (NM_177762) promoter-TSS (NM_177762) 241 NR_028298 67170 Mm.392029 XM_001479511 2610306M01Rik - RIKEN cDNA 2610306M01 gene 0.051282 0.560510 -0.599794 chr11-765 chr11 72398315 72398471 + 25.4 NA Intergenic Intergenic -25062 NM_025985 67128 Mm.458052 NM_025985 ENSMUSG00000020794 Ube2g1 2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) 0.012821 0.598726 -5.208890 chr9-637 chr9 58649591 58649747 + 25.4 NA intron (NM_001081192, intron 2 of 7) intron (NM_001081192, intron 2 of 7) 28021 NM_001081192 330953 Mm.151967 NM_001081192 ENSMUSG00000032338 Hcn4 Bcng3|Hcn3 hyperpolarization-activated, cyclic nucleotide-gated K+ 4 0.012821 0.560510 -5.537307 chr9-692 chr9 83234604 83234760 + 25.4 NA intron (NM_029434, intron 1 of 7) intron (NM_029434, intron 1 of 7) 3135 NM_027448 75782 Mm.199698 NM_027448 ENSMUSG00000032258 Lca5 4930431B11Rik|5730406O13Rik|AV274874|ORF64 Leber congenital amaurosis 5 (human) 0.012821 0.477707 0.482579 chr4-606 chr4 6400020 6400176 + 25.4 NA Intergenic ORR1A4|LTR|MaLR -18680 NM_010945 18201 Mm.3059 NM_010945 ENSMUSG00000028245 Nsmaf AA959567|C630007J05|Fan neutral sphingomyelinase (N-SMase) activation associated factor 0.000000 0.414013 -3.544474 chr1-1137 chr1 187255988 187256144 + 25.4 NA Intergenic Intergenic 57973 NR_033600 114668 Mm.379303 NR_033600 5033404E19Rik - RIKEN cDNA 5033404E19 gene 0.006410 0.535032 -2.284289 chr5-921 chr5 115588238 115588394 + 25.4 NA exon (NM_025573, exon 1 of 4) exon (NM_025573, exon 1 of 4) 141 NM_025573 108014 Mm.287826 NM_025573 ENSMUSG00000029538 Srsf9 25kDa|2610029M16Rik|SRp30c|Sfrs9 serine/arginine-rich splicing factor 9 0.217949 0.789809 -9.205942 chr4-707 chr4 86917772 86917928 + 25.4 NA Intergenic Intergenic -216079 NM_172426 76376 Mm.127296 NM_001110240 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 0.000000 0.363057 -6.873507 chr6-520 chr6 54234405 54234561 + 25.4 NA intron (NR_033635, intron 6 of 13) intron (NR_033635, intron 6 of 13) -22106 NM_030024 78004 Mm.41984 NM_030024 ENSMUSG00000045725 Prr15 E130201N16Rik|G90 proline rich 15 0.019231 0.471338 -4.845786 chr15-319 chr15 25213894 25214050 + 25.4 NA Intergenic Intergenic 144517 NM_027395 70350 Mm.29586 NM_027395 ENSMUSG00000045763 Basp1 2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 0.012821 0.477707 -4.965239 chr17-527 chr17 57870488 57870644 + 25.4 NA intron (NM_001081653, intron 12 of 23) intron (NM_001081653, intron 12 of 23) 415662 NM_001081653 620292 Mm.391030 NM_001081653 ENSMUSG00000038048 Cntnap5c Caspr5-3|EG620292|Gm325 contactin associated protein-like 5C 0.000000 0.452229 -6.969760 chr4-868 chr4 151544937 151545093 + 25.4 NA TTS (NR_033138) TTS (NR_033138) 3676 NR_033138 330004 Mm.291863 NM_001033414 Gm833 - predicted gene 833 0.000000 0.509554 -3.317630 chr5-860 chr5 93510278 93510434 + 25.4 NA promoter-TSS (NM_183392) promoter-TSS (NM_183392) 43 NM_183392 269113 Mm.275289 NM_183392 ENSMUSG00000034826 Nup54 3110079L04Rik|54kDa nucleoporin 54 0.096154 0.662420 0.742101 chr12-523 chr12 12836436 12836592 + 25.4 NA Intergenic Intergenic 131308 NM_008709 18109 Mm.16469 NM_008709 ENSMUSG00000037169 Mycn N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) 0.012821 0.490446 0.331234 chr14-248 chr14 43717334 43717490 + 25.4 NA Intergenic Intergenic 63840 NM_008962 19214 Mm.5105 NM_008962 ENSMUSG00000071489 Ptgdr DP|PGD prostaglandin D receptor 0.012821 0.458599 5.370134 chr1-806 chr1 9515609 9515765 + 25.4 NA Intergenic Intergenic -14934 NM_021511 59014 Mm.29061 NM_021511 ENSMUSG00000061024 Rrs1 5730466A07Rik|AA415037|D1Ertd701e|Rrr RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 0.000000 0.343949 -0.921178 chr1-974 chr1 89678218 89678374 + 25.4 NA Intergenic Intergenic -6161 NM_177646 227333 Mm.277217 XM_906228 Dgkd AI841987|D330025K09|DGKdelta|KIAA0145|dgkd-2 diacylglycerol kinase, delta 0.000000 0.522293 3.119964 chr11-723 chr11 55313096 55313252 + 25.4 NA promoter-TSS (NM_013716) promoter-TSS (NM_013716) 0 NM_013716 27041 Mm.405739 NM_013716 ENSMUSG00000018583 G3bp1 AI849976|B430204O07|C87777|G3bp|KIAA4115|mKIAA4115 Ras-GTPase-activating protein SH3-domain binding protein 1 0.141026 0.738854 -5.402772 chr5-1039 chr5 150725848 150726004 + 25.4 NA intron (NM_172887, intron 50 of 60) intron (NM_172887, intron 50 of 60) 44672 NR_024513 194292 Mm.300184 XM_110552 Gm5 Gm1812 predicted gene 5 0.006410 0.382166 5.187804 chr12-588 chr12 55618988 55619144 + 25.4 NA Intergenic Intergenic -1575 NM_025456 66266 Mm.156440 NM_025456 ENSMUSG00000054302 Eapp 1810011O16Rik E2F-associated phosphoprotein 0.006410 0.375796 -2.774580 chr7-521 chr7 112035406 112035562 + 25.4 NA intron (NM_177282, intron 2 of 19) intron (NM_177282, intron 2 of 19) 18468 NM_001193305 320878 Mm.52312 NM_001193305 ENSMUSG00000038244 Mical2 5330438E18Rik|9530064J02|KIAA0750|mKIAA0750 microtubule associated monoxygenase, calponin and LIM domain containing 2 0.000000 0.554140 2.137450 chr16-310 chr16 17445027 17445183 + 25.4 NA promoter-TSS (NM_026909) promoter-TSS (NM_026909) -490 NM_026909 69009 Mm.10174 NM_026909 ENSMUSG00000022760 Thap7 1810004B07Rik THAP domain containing 7 0.019231 0.388535 2.051664 chr2-816 chr2 109025248 109025404 + 25.4 NA intron (NM_029790, intron 2 of 5) intron (NM_029790, intron 2 of 5) 53803 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mett5d1 0610027B03Rik|AI303697|AW049952|MGC118452 methyltransferase 5 domain containing 1 0.006410 0.503185 1.934121 chr11-706 chr11 49974673 49974829 + 25.4 NA promoter-TSS (NM_029745) promoter-TSS (NM_029745) -31 NM_029745 76795 Mm.413847 NM_029745 ENSMUSG00000036644 Tbc1d9b 2700008N14Rik|AU019384 TBC1 domain family, member 9B 0.153846 0.764331 -4.001476 chr8-617 chr8 129674809 129674965 + 25.4 NA Intergenic Intergenic 157033 NM_024214 67952 Mm.380026 NM_024214 ENSMUSG00000058779 Tomm20 1810060K07Rik|BB284719|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 translocase of outer mitochondrial membrane 20 homolog (yeast) 0.012821 0.541401 -2.143846 chr19-265 chr19 58267858 58268014 + 25.4 NA Intergenic L1MEd|LINE|L1 239780 NM_010279 14585 Mm.88367 NM_010279 ENSMUSG00000025089 Gfra1 AU042498 glial cell line derived neurotrophic factor family receptor alpha 1 0.025641 0.452229 -1.505038 chr9-662 chr9 66729633 66729789 + 25.4 NA Intergenic Intergenic -10862 NM_173413 235442 Mm.260376 NM_173413 ENSMUSG00000036943 Rab8b 5930437D16|D330025I23Rik RAB8B, member RAS oncogene family 0.032051 0.560510 -6.848588 chr1-986 chr1 93243922 93244078 + 25.4 NA promoter-TSS (NM_019479) promoter-TSS (NM_019479) -372 NM_019479 55927 Mm.280029 NM_019479 ENSMUSG00000067071 Hes6 AI326893|bHLHb41 hairy and enhancer of split 6 (Drosophila) 0.032051 0.528662 -5.668541 chr18-324 chr18 40052209 40052365 + 25.4 NA Intergenic Intergenic 152817 NM_011033 18459 Mm.9493 NM_011033 ENSMUSG00000051732 Pabpc2 PABP|PABP+|Pabp2 poly(A) binding protein, cytoplasmic 2 0.006410 0.363057 1.904647 chr19-266 chr19 58319960 58320116 + 25.4 NA intron (NM_010279, intron 7 of 9) intron (NM_010279, intron 7 of 9) 187678 NM_010279 14585 Mm.88367 NM_010279 ENSMUSG00000025089 Gfra1 AU042498 glial cell line derived neurotrophic factor family receptor alpha 1 0.032051 0.522293 -4.349664 chr2-650 chr2 3083688 3083844 + 25.4 NA intron (NM_001081161, intron 1 of 7) intron (NM_001081161, intron 1 of 7) 48107 NM_001081161 269233 Mm.478311 NM_001081161 ENSMUSG00000050530 Fam171a1 9630050M13Rik|AA409679 family with sequence similarity 171, member A1 0.006410 0.318471 -3.558054 chr4-709 chr4 86932301 86932457 + 25.4 NA Intergenic Intergenic -230608 NM_172426 76376 Mm.127296 NM_001110240 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 0.012821 0.471338 -2.740428 chr7-428 chr7 35012189 35012345 + 25.4 NA intron (NM_026181, intron 6 of 19) intron (NM_026181, intron 6 of 19) 14933 NM_026181 67471 Mm.358705 NM_026181 ENSMUSG00000063808 Gpatch1 1300003A17Rik|ECGP|Gpatc1 G patch domain containing 1 0.000000 0.426752 -5.909849 chr3-589 chr3 114029118 114029274 + 25.4 NA intron (NM_007729, intron 1 of 66) intron (NM_007729, intron 1 of 66) 6653 NM_007729 12814 Mm.209715 NM_007729 ENSMUSG00000027966 Col11a1 C530001D20Rik|cho collagen, type XI, alpha 1 0.025641 0.496815 -4.345287 chr13-497 chr13 114623389 114623545 + 25.4 NA Intergenic MER90a|LTR|ERV1 115975 NM_130796 170625 Mm.33721 NM_130796 ENSMUSG00000042364 Snx18 Snag1 sorting nexin 18 0.006410 0.452229 3.098780 chr2-831 chr2 121094893 121095049 + 25.4 NA intron (NM_153075, intron 7 of 12) intron (NM_153075, intron 7 of 12) 10262 NM_153075 212670 Mm.384318 NM_153075 ENSMUSG00000033486 Catsper2 - cation channel, sperm associated 2 0.000000 0.484076 -2.333190 chr16-305 chr16 13748477 13748633 + 25.4 NA TTS (NM_053181) TTS (NM_053181) 15701 NM_010946 18203 Mm.380410 NM_010946 ENSMUSG00000022681 Ntan1 - N-terminal Asn amidase 0.006410 0.477707 -2.400657 chr1-867 chr1 45850010 45850064 + 25.4 NA Intergenic Intergenic 20103 NM_016917 53945 Mm.28756 NM_016917 ENSMUSG00000025993 Slc40a1 Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1 solute carrier family 40 (iron-regulated transporter), member 1 0.000000 0.472727 -5.151606 chr9-566 chr9 23181999 23182155 + 25.4 NA intron (NM_028472, intron 13 of 14) intron (NM_028472, intron 13 of 14) 208600 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator 0.006410 0.356688 -3.151978 chr11-803 chr11 85198376 85198532 + 25.4 NA intron (NM_001166642, intron 6 of 24) intron (NM_001166642, intron 6 of 24) 29096 NM_001166643 192197 Mm.287663 NM_001166642 ENSMUSG00000059439 Bcas3 1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira breast carcinoma amplified sequence 3 0.019231 0.509554 0.257312 chr5-781 chr5 36054020 36054176 + 25.4 NA Intergenic Intergenic -7961 NM_194344 231147 Mm.290429 NM_194344 ENSMUSG00000036553 Sh3tc1 4631428G15|BC024909|MGC67153 SH3 domain and tetratricopeptide repeats 1 0.019231 0.496815 -4.001245 chr15-385 chr15 72813466 72813622 + 25.4 NA intron (NM_029640, intron 8 of 21) intron (NM_029640, intron 8 of 21) 69524 NM_029640 76510 Mm.158902 NM_001164641 ENSMUSG00000047921 Trappc9 1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|KIAA1882|Nibp|TRS130|mKIAA1882 trafficking protein particle complex 9 0.012821 0.477707 -3.968431 chrX-88 chrX 39634781 39634937 + 25.4 NA Intergenic Intergenic -115446 NM_011855 23963 Mm.327698 NM_011855 ENSMUSG00000016150 Odz1 Odz2|TCAP-1|Ten-m1 odd Oz/ten-m homolog 1 (Drosophila) 0.000000 0.273885 -4.996042 chr16-373 chr16 88710835 88710991 + 25.4 NA Intergenic Intergenic 4091 NM_013707 23927 Mm.3502 NM_013707 Krtap14 AA589630|MGC129168|MGC129169|Pmg1|mKAP13 keratin associated protein 14 0.000000 0.439490 -1.562205 chr17-469 chr17 31590333 31590489 + 25.4 NA Intergenic Intergenic -5909 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Msk|Sik|Snf1lk salt inducible kinase 1 0.025641 0.528662 -3.607271 chr19-250 chr19 47143882 47144038 + 25.4 NA promoter-TSS (NM_023211) promoter-TSS (NM_023211) -24 NM_023211 66477 Mm.29722 NM_023211 ENSMUSG00000071528 Usmg5 2010301L15Rik upregulated during skeletal muscle growth 5 0.147436 0.675159 3.553593 chr13-449 chr13 73497407 73497563 + 25.4 NA Intergenic Intergenic -229013 NM_018885 50916 Mm.103784 NM_018885 ENSMUSG00000021604 Irx4 - Iroquois related homeobox 4 (Drosophila) 0.012821 0.496815 3.179486 chr5-813 chr5 64105163 64105319 + 25.4 NA intron (NM_029554, intron 1 of 3) intron (NM_029554, intron 1 of 3) 13612 NM_029554 76261 Mm.38143 NM_029554 ENSMUSG00000060512 0610040J01Rik AI662686 RIKEN cDNA 0610040J01 gene 0.019231 0.394904 1.502484 chr1-1136 chr1 186342588 186342744 + 25.4 NA Intergenic Intergenic 90615 NM_008250 15284 Mm.1347 NM_008250 ENSMUSG00000039377 Hlx Hlx1 H2.0-like homeobox 0.006410 0.414013 -0.622855 chr5-930 chr5 117618494 117618650 + 25.4 NA intron (NM_021539, intron 1 of 8) intron (NM_021539, intron 1 of 8) 238 NM_021539 59043 Mm.28489 NM_021539 ENSMUSG00000029364 Wsb2 AA673511|Swip2|WSB-2 WD repeat and SOCS box-containing 2 0.115385 0.738854 -7.054163 chr1-1082 chr1 160768623 160768779 + 25.4 NA intron (NM_001085376, intron 2 of 21) intron (NM_001085376, intron 2 of 21) 25414 NM_001085376 23850 Mm.458621 XM_001472777 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe pappalysin 2 0.019231 0.414013 -1.743107 chr6-482 chr6 35309034 35309190 + 25.4 NA Intergenic Intergenic -52819 NM_173375 208164 Mm.257766 NM_173375 ENSMUSG00000047420 Fam180a B230314O19 family with sequence similarity 180, member A 0.025641 0.496815 -0.802767 chr6-546 chr6 74722838 74722994 + 25.4 NA Intergenic MERVL_2A|LTR|ERVL -1323740 NM_025737 66740 Mm.440760 NM_025737 ENSMUSG00000056197 4931417E11Rik - RIKEN cDNA 4931417E11 gene 0.006410 0.401274 -0.061832 chr3-477 chr3 22086690 22086846 + 25.4 NA Intergenic Intergenic -180956 NM_030732 81004 Mm.446265 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 transducin (beta)-like 1X-linked receptor 1 0.006410 0.522293 -1.264910 chr11-777 chr11 77261330 77261486 + 25.4 NA intron (NM_177710, intron 13 of 14) intron (NM_177710, intron 13 of 14) -18699 NM_139129 216961 Mm.33477 NM_139128 ENSMUSG00000020836 Coro6 - coronin 6 0.000000 0.407643 -3.471313 chr15-388 chr15 73431318 73431474 + 25.4 NA intron (NM_001033219, intron 2 of 7) intron (NM_001033219, intron 2 of 7) -7614 NM_001168255 106068 Mm.212813 NM_001033219 ENSMUSG00000036649 Slc45a4 9330175B01Rik|AW552276 solute carrier family 45, member 4 0.006410 0.477707 3.701966 chr15-339 chr15 33386426 33386582 + 25.4 NA intron (NM_018755, intron 6 of 8) intron (NM_018755, intron 6 of 8) -35976 NR_033608 73486 NR_033608 1700084J12Rik - RIKEN cDNA 1700084J12 gene 0.012821 0.394904 -6.188165 chr5-1043 chr5 151637050 151637206 + 25.4 NA Intergenic CpG -178556 NM_146258 243362 Mm.209272 NM_001163493 ENSMUSG00000016128 Stard13 DLC2|GT650|MGC38133 StAR-related lipid transfer (START) domain containing 13 0.089744 0.687898 -1.805465 chrX-102 chrX 97535615 97535771 + 25.4 NA Intergenic Intergenic 33794 NM_172932 245537 Mm.479388 XM_001478124 ENSMUSG00000031302 Nlgn3 A230085M13Rik|HNL3|NL3 neuroligin 3 0.006410 0.458599 -0.137098 chrX-95 chrX 69098470 69098626 + 25.4 NA Intergenic Intergenic 20393 NM_020488 57249 Mm.117125 NM_020488 ENSMUSG00000031344 Gabrq - gamma-aminobutyric acid (GABA) A receptor, subunit theta 0.000000 0.343949 -5.831373 chr15-367 chr15 58818831 58818987 + 25.4 NA intron (NM_001146180, intron 3 of 13) intron (NM_001146180, intron 3 of 13) 55017 NM_023172 66218 Mm.322294 NM_023172 ENSMUSG00000022354 Ndufb9 1190008J14Rik NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 0.019231 0.496815 -5.465322 chr17-541 chr17 66348998 66349154 + 25.4 NA intron (NM_172963, intron 1 of 13) intron (NM_172963, intron 1 of 13) 5619 NM_172963 68617 Mm.456506 NM_001114098 ENSMUSG00000052105 1110012J17Rik D130071O13|Kiaa0802|MGC77963|mKIAA0802|t8219b25 RIKEN cDNA 1110012J17 gene 0.025641 0.496815 4.329057 chr4-792 chr4 128390117 128390273 + 25.4 NA intron (NM_178110, intron 1 of 4) intron (NM_178110, intron 1 of 4) 3752 NM_178110 67525 Mm.30653 NM_178110 ENSMUSG00000041000 Trim62 6330414G21Rik|AI450348 tripartite motif-containing 62 0.032051 0.605096 -1.172815 chr13-448 chr13 72164830 72164986 + 25.4 NA Intergenic Intergenic 264806 NM_010573 16371 Mm.316056 NM_010573 ENSMUSG00000060969 Irx1 - Iroquois related homeobox 1 (Drosophila) 0.012821 0.369427 -0.400395 chr1-1114 chr1 173864049 173864205 + 25.4 NA promoter-TSS (NM_033509) promoter-TSS (NM_033509) -184 NM_033509 93840 Mm.392110 NM_033509 ENSMUSG00000026556 Vangl2 C530001F03Rik|Lp|Lpp1|Ltap|Vang1l2|loop-tail|stbm|strabismus vang-like 2 (van gogh, Drosophila) 0.089744 0.738854 -4.105345 chr1-973 chr1 88882661 88882817 + 25.4 NA Intergenic Intergenic 38360 NM_007433 11650 Mm.195224 NM_007433 ENSMUSG00000026246 Alppl2 Akp5|C77216|D1Ertd816e|EAP alkaline phosphatase, placental-like 2 0.012821 0.560510 -2.531132 chr8-607 chr8 128203705 128203861 + 25.4 NA Intergenic Intergenic 175017 NM_001081337 244668 Mm.463243 NM_001081337 ENSMUSG00000001995 Sipa1l2 BC058408|mKIAA1389 signal-induced proliferation-associated 1 like 2 0.012821 0.554140 -5.620886 chr7-576 chr7 132651915 132652071 + 25.4 NA promoter-TSS (NM_212473) promoter-TSS (NM_212473) -454 NM_212473 77938 Mm.225649 NM_175268 ENSMUSG00000030956 Fam53b A930008G19Rik|MGC40647|mKIAA0140 family with sequence similarity 53, member B 0.173077 0.707006 -3.357754 chr9-672 chr9 70096250 70096406 + 25.4 NA intron (NM_181072, intron 2 of 27) intron (NM_181072, intron 2 of 27) 89815 NM_181072 71602 Mm.249311 NM_181072 ENSMUSG00000032220 Myo1e 2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3 myosin IE 0.012821 0.452229 0.716585 chr18-284 chr18 9734613 9734769 + 25.4 NA intron (NM_130449, intron 2 of 9) intron (NM_130449, intron 2 of 9) 27046 NM_130449 140792 Mm.218571 NM_130449 ENSMUSG00000036103 Colec12 CL-P1|SRCL|Scara4 collectin sub-family member 12 0.012821 0.382166 -6.400331 chr4-717 chr4 94278131 94278287 + 25.4 NA intron (NM_013690, intron 2 of 22) intron (NM_013690, intron 2 of 22) 46892 NM_013690 21687 Mm.14313 NM_013690 ENSMUSG00000006386 Tek AA517024|Cd202b|Hyk|Tie2|tie-2 endothelial-specific receptor tyrosine kinase 0.012821 0.458599 -0.251180 chr1-865 chr1 43244070 43244226 + 25.4 NA Intergenic Intergenic -135641 NM_010212 14200 Mm.6799 NM_010212 ENSMUSG00000008136 Fhl2 C76204|SLIM3 four and a half LIM domains 2 0.000000 0.426752 -5.313152 chr17-422 chr17 23581004 23581160 + 25.4 NA promoter-TSS (NM_027220) promoter-TSS (NM_027220) -311 NM_027220 69814 Mm.244143 NM_027220 ENSMUSG00000048992 Prss32 2010001P08Rik|mT5|tryptase-5 protease, serine, 32 0.019231 0.566879 -1.945307 chr6-441 chr6 5652930 5653086 + 25.4 NA Intergenic (CCTAT)n|Simple_repeat|Simple_repeat -22630 NM_001191023 13426 Mm.20893 NM_001191023 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 0.000000 0.414013 -5.447353 chr3-505 chr3 51430292 51430448 + 25.4 NA Intergenic Intergenic -16454 NM_023502 69257 Mm.131038 NM_023502 ENSMUSG00000037174 Elf2 2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|MGC102660|NERF|NERF-1A|NERF-1B|NERF-2 E74-like factor 2 0.032051 0.388535 -1.610766 chr17-550 chr17 81651443 81651599 + 25.4 NA Intergenic Intergenic -4818 NM_011406 20541 Mm.265834 NM_001112798 ENSMUSG00000054640 Slc8a1 AI852629|AV344025|D930008O12Rik|MGC90693|Ncx1 solute carrier family 8 (sodium/calcium exchanger), member 1 0.012821 0.414013 -2.372539 chrX_random-1 chrX_random 38999 39134 + 25.4 NA promoter-TSS (NM_011515) promoter-TSS (NM_011515) 82 NM_011515 20955 Mm.1517 NM_011515 Vamp7 Sybl1|TI-VAMP|VAMP-7 vesicle-associated membrane protein 7 NA NA chr1-1123 chr1 181796075 181796231 + 25.4 NA Intergenic Intergenic -1610 NM_001033285 226751 Mm.259655 XM_975852 ENSMUSG00000026490 Cdc42bpa A930014J19Rik|DMPK-like|MGC189823 CDC42 binding protein kinase alpha 0.044872 0.541401 -3.374737 chr5-846 chr5 82752830 82752986 + 25.4 NA intron (NM_198702, intron 14 of 27) intron (NM_198702, intron 14 of 27) 656755 NM_198702 319387 Mm.461016 NM_198702 ENSMUSG00000037605 Lphn3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|MGC99439|mKIAA0768 latrophilin 3 0.000000 0.407643 -5.850739 chr1-843 chr1 36061281 36061437 + 25.4 NA Intergenic Intergenic 48414 NM_015818 50785 Mm.213566 NM_015818 ENSMUSG00000045216 Hs6st1 6Ost1 heparan sulfate 6-O-sulfotransferase 1 0.012821 0.426752 1.886491 chr2-864 chr2 152877889 152878045 + 25.4 NA intron (NM_133847, intron 3 of 17) intron (NM_133847, intron 3 of 17) 25226 NM_133847 99237 Mm.330674 NM_133847 ENSMUSG00000068040 Tm9sf4 AA986553|AU045326|B930079E06|KIAA0255|MGC117930|mKIAA0255 transmembrane 9 superfamily protein member 4 0.000000 0.433121 0.898446 chr5-952 chr5 123488841 123488997 + 25.4 NA 5' UTR (NM_026000, exon 1 of 6) 5' UTR (NM_026000, exon 1 of 6) 112 NM_026000 67151 Mm.278997 NM_026000 ENSMUSG00000029440 Psmd9 1500011J20Rik|2610202L11Rik|Bridge-1|P27 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 0.115385 0.681529 -2.761832 chr4-769 chr4 118490782 118490938 + 25.4 NA Intergenic Intergenic 30962 NM_133892 100470 Mm.26698 NM_133892 ENSMUSG00000024903 Lao1 AW990848 L-amino acid oxidase 1 0.000000 0.350318 -8.556443 chr6-599 chr6 97409672 97409828 + 25.4 NA intron (NM_145148, intron 2 of 23) intron (NM_145148, intron 2 of 23) 173370 NM_145148 232288 Mm.27789 NM_145148 ENSMUSG00000030064 Frmd4b 6030440G05Rik|C87375|GOBLIN|GRSP1|R74720|mKIAA1013 FERM domain containing 4B 0.006410 0.484076 1.596371 chr9-711 chr9 96497611 96497767 + 25.4 NA exon (NM_175537, exon 3 of 3) exon (NM_175537, exon 3 of 3) 43338 NM_175537 245007 Mm.443626 NM_175537 ENSMUSG00000040433 Zbtb38 A930014K01Rik|CIBZ zinc finger and BTB domain containing 38 0.044872 0.566879 -1.740391 chr18-345 chr18 56424928 56425084 + 25.4 NA Intergenic Intergenic -132494 NM_026240 107022 Mm.24356 NM_026240 ENSMUSG00000001700 Gramd3 9030613F08Rik|9130427A09Rik|AW061306|NS3TP2 GRAM domain containing 3 0.012821 0.375796 0.223421 chr12-708 chr12 107253923 107254079 + 25.4 NA Intergenic L2|LINE|L2 -136627 NR_015512 71033 Mm.159404 NR_015512 4933406K04Rik 4930426M03Rik|4930485I22Rik|4933427G14Rik RIKEN cDNA 4933406K04 gene 0.025641 0.541401 -3.345218 chr9-647 chr9 61137504 61137660 + 25.4 NA Intergenic Intergenic -32789 NM_001083928 21887 Mm.469199 NM_001083927 ENSMUSG00000032280 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 transducin-like enhancer of split 3, homolog of Drosophila E(spl) 0.006410 0.541401 -0.936201 chr15-445 chr15 102611270 102611426 + 25.4 NA Intergenic Intergenic -61136 NM_026192 67488 Mm.71682 NM_026192 ENSMUSG00000023055 Calcoco1 1810009B06Rik|Cocoa|Gcap11|KIAA1536|mKIAA1536 calcium binding and coiled coil domain 1 0.006410 0.464968 3.067963 chr4-791 chr4 128327529 128327685 + 25.4 NA Intergenic Lx7|LINE|L1 -19191 NM_001081098 230761 Mm.22616 NM_001081098 ENSMUSG00000028799 Zfp362 - zinc finger protein 362 0.012821 0.490446 -3.818161 chr15-353 chr15 40352977 40353133 + 25.4 NA Intergenic B3|SINE|B2 -132060 NM_011766 22762 Mm.39496 NM_011766 ENSMUSG00000022306 Zfpm2 B330005D23Rik|FOG-2|FOG2 zinc finger protein, multitype 2 0.006410 0.414013 3.251814 chr1-827 chr1 21658333 21658489 + 25.4 NA intron (NM_023872, intron 1 of 13) intron (NM_023872, intron 1 of 13) 288682 NM_001160139 226922 Mm.403737 NM_001160139 ENSMUSG00000028033 Kcnq5 7730402H11|9230107O05Rik|AA589396|D1Mgi1 potassium voltage-gated channel, subfamily Q, member 5 0.006410 0.439490 0.844515 chr1-949 chr1 79480479 79480635 + 25.4 NA Intergenic ORR1D2|LTR|MaLR 70439 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 0.019231 0.458599 0.568698 chr10-520 chr10 80724182 80724338 + 25.4 NA promoter-TSS (NM_027381) promoter-TSS (NM_027381) 29 NM_027381 70312 Mm.87628 NM_027381 ENSMUSG00000034889 2510012J08Rik - RIKEN cDNA 2510012J08 gene 0.083333 0.579618 -1.834345 chr15-431 chr15 97578823 97578979 + 25.4 NA exon (NM_144850, exon 19 of 28) exon (NM_144850, exon 19 of 28) 16799 NM_001177810 223864 Mm.24028 NM_001177810 ENSMUSG00000022469 Rapgef3 2310016P22Rik|9330170P05Rik|Epac|Epac1|MGC19192 Rap guanine nucleotide exchange factor (GEF) 3 0.032051 0.611465 4.408719 chr13-392 chr13 40870801 40870957 + 25.4 NA promoter-TSS (NM_023887) promoter-TSS (NM_023887) -226 NM_023887 14538 Mm.314757 NM_008105 ENSMUSG00000021360 Gcnt2 5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC glucosaminyl (N-acetyl) transferase 2, I-branching enzyme 0.019231 0.484076 -7.046008 chr17-499 chr17 45060710 45060866 + 25.4 NA Intergenic Intergenic 4708 NM_001177470 653016 Mm.45676 XM_001000918 Gm7325 EG653016|Esgp predicted gene 7325 0.012821 0.630573 -3.340427 chr7-400 chr7 6039440 6039596 + 25.4 NA Intergenic Intergenic -4469 NM_177061 257882 Mm.479489 NM_177061 ENSMUSG00000045929 Olfr1344 4930415J05Rik|MOR124-1 olfactory receptor 1344 0.006410 0.496815 -2.946868 chr3-637 chr3 140589131 140589287 + 25.4 NA Intergenic L1Md_F2|LINE|L1 560533 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 0.006410 0.420382 -2.523620 chr2-694 chr2 28919625 28919781 + 25.4 NA Intergenic MT2A|LTR|ERVL -27297 NM_198033 269254 Mm.41867 NM_198033 ENSMUSG00000043535 Setx A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625 senataxin 0.000000 0.439490 -0.999229 chr4-845 chr4 147925442 147925598 + 25.4 NA intron (NM_019781, intron 1 of 8) intron (NM_019781, intron 1 of 8) 18092 NM_019781 56273 Mm.184172 NM_019781 ENSMUSG00000028975 Pex14 Pex14p|R75137 peroxisomal biogenesis factor 14 0.032051 0.643312 -4.748676 chr5-901 chr5 110681494 110681650 + 25.4 NA intron (NM_001142642, intron 1 of 18) intron (NM_001142642, intron 1 of 18) 7233 NM_001142642 381668 Mm.472278 NM_001142642 ENSMUSG00000043323 Fbrsl1 2410025L10Rik|AI467568|Gm1049|mKIAA1545 fibrosin-like 1 0.000000 0.535032 -2.523620 chr10-591 chr10 126382498 126382654 + 25.4 NA intron (NM_001113470, intron 1 of 7) intron (NM_001113470, intron 1 of 7) 911 NM_001113470 52468 Mm.29490 NM_001113470 ENSMUSG00000078429 Ctdsp2 AI586070|D10Ertd73e|MGC38258|OS-4|OS4|SCP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 0.108974 0.745223 2.714304 chr2-657 chr2 6248907 6249063 + 25.4 NA intron (NM_001080548, intron 1 of 14) intron (NM_001080548, intron 1 of 14) 8957 NM_001080548 98910 Mm.40673 NM_001080548 ENSMUSG00000039046 Usp6nl AI316785|RNTRE|TRE2NL|mKIAA0019 USP6 N-terminal like 0.019231 0.445860 -0.028996 chr5-791 chr5 38674967 38675123 + 25.4 NA intron (NM_001012363, intron 8 of 11) intron (NM_001012363, intron 8 of 11) 67288 NM_013503 13492 Mm.167154 NM_013503 ENSMUSG00000039358 Drd5 D5R|Drd-5|Drd1b|Gpcr1 dopamine receptor D5 0.006410 0.343949 -1.482968 chr3-630 chr3 138080780 138080936 + 25.4 NA promoter-TSS (NM_001163457) promoter-TSS (NM_001163457) -66 NM_175389 108943 Mm.471692 NM_175389 ENSMUSG00000004127 Rg9mtd2 3110023L08Rik|AA794508|MGC107421|MGC116571|Rnmtd2 RNA (guanine-9-) methyltransferase domain containing 2 0.089744 0.592357 -2.749271 chr1-941 chr1 75361240 75361396 + 25.4 NA intron (NM_001001566, intron 1 of 3) intron (NM_001001566, intron 1 of 3) 1301 NM_001001565 74241 Mm.260577 NM_001001565 ENSMUSG00000032997 Chpf 1700028N03Rik|AI414328|D1Bwg1363e chondroitin polymerizing factor 0.012821 0.477707 -0.289201 chr2-681 chr2 25792445 25792601 + 25.4 NA intron (NM_001115076, intron 1 of 16) intron (NM_001115076, intron 1 of 16) 12768 NM_001115076 227634 Mm.36834 XM_129375 ENSMUSG00000026933 Camsap1 9530003A05Rik|C77823|PRO2405 calmodulin regulated spectrin-associated protein 1 0.012821 0.445860 1.524701 chr2-661 chr2 7164186 7164342 + 25.4 NA intron (NM_001110231, intron 2 of 15) intron (NM_001110231, intron 2 of 15) 149589 NM_001110232 14007 Mm.411896 NM_001110228 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 0.000000 0.401274 0.934684 chr15-420 chr15 91746930 91747086 + 25.4 NA intron (NM_207243, intron 34 of 42) intron (NM_207243, intron 34 of 42) 80914 NM_198927 223809 Mm.46386 NM_198927 ENSMUSG00000047295 Smgc 2310010P21Rik|DXImx49e|Muc19|Sfc21 submandibular gland protein C 0.000000 0.369427 -1.259827 chr4-744 chr4 106048881 106049037 + 25.4 NA Intergenic MER5A|DNA|MER1_type -10010 NM_053272 74754 Mm.133370 NM_053272 ENSMUSG00000034926 Dhcr24 2310076D10Rik|5830417J06Rik|mKIAA0018 24-dehydrocholesterol reductase 0.019231 0.541401 -3.114431 chr7-506 chr7 109230344 109230500 + 25.4 NA promoter-TSS (NM_054103) promoter-TSS (NM_054103) -192 NM_054103 117229 Mm.389950 XM_358897 ENSMUSG00000031027 Stk33 4921505G21Rik|AW061264 serine/threonine kinase 33 0.115385 0.643312 3.493292 chr17-498 chr17 44637096 44637252 + 25.4 NA Intergenic MIR|SINE|MIR 260114 NM_152810 71702 Mm.28270 NM_152810 ENSMUSG00000023932 Cdc5l 1200002I02Rik|AA408004|PCDC5RP cell division cycle 5-like (S. pombe) 0.019231 0.579618 -2.561569 chr7-492 chr7 97231596 97231752 + 25.4 NA Intergenic MLT1B|LTR|MaLR -15134 NM_199035 381903 Mm.407368 NM_199035 ENSMUSG00000035704 Alg8 AI447372|Gm1089|MGC74399 asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase) 0.000000 0.464968 -1.956449 chr3-534 chr3 82002521 82002677 + 25.4 NA Intergenic Intergenic -15943 NM_177662 229445 Mm.254642 NM_177662 ENSMUSG00000028015 Ctso A330105D01Rik|A430056C07|AI118514 cathepsin O 0.012821 0.350318 0.462786 chr15-406 chr15 82977404 82977560 + 25.4 NA promoter-TSS (NM_178627) promoter-TSS (NM_178627) 72 NR_004432 104307 Mm.471434 NR_004432 Rnu12 - RNA U12, small nuclear 0.070513 0.515924 -4.001475 chr9-768 chr9 122318848 122319004 + 25.4 NA Intergenic RCHARR1|DNA|MER1_type -102272 NR_015610 319626 Mm.186748 XM_982329 9530059O14Rik - RIKEN cDNA 9530059O14 gene 0.025641 0.452229 1.777578 chr16-320 chr16 25162064 25162220 + 25.4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -40023 NM_175165 71338 Mm.126851 NM_175165 ENSMUSG00000048399 Tprg 5430420C16Rik|Tprg1 transformation related protein 63 regulated 0.019231 0.375796 -5.381743 chr9-750 chr9 118901204 118901360 + 25.4 NA promoter-TSS (NM_001164567) promoter-TSS (NM_001164567) -193 NM_011700 22351 Mm.83817 NM_001164567 ENSMUSG00000038775 Vill Villp villin-like 0.032051 0.592357 -1.080967 chr17-521 chr17 56059121 56059277 + 25.4 NA exon (NM_011218, exon 14 of 33) exon (NM_011218, exon 14 of 33) 50989 NM_011218 19280 Mm.258771 NM_011218 ENSMUSG00000013236 Ptprs AL022616|MGC90571|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma protein tyrosine phosphatase, receptor type, S 0.166667 0.783440 5.203652 chr9-687 chr9 78370661 78370817 + 25.4 NA intron (NM_172773, intron 1 of 10) intron (NM_172773, intron 1 of 10) 2972 NM_172773 235504 Mm.46932 NM_172773 ENSMUSG00000049624 Slc17a5 4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 (anion/sugar transporter), member 5 0.032051 0.522293 -2.310200 chr12-659 chr12 86796866 86797022 + 25.4 NA intron (NM_001081423, intron 17 of 33) intron (NM_001081423, intron 17 of 33) 82892 NM_001081423 320244 Mm.132172 NM_001081423 ENSMUSG00000012609 Ttll5 1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998 tubulin tyrosine ligase-like family, member 5 0.019231 0.439490 -0.109510 chr8-466 chr8 18765022 18765178 + 25.4 NA intron (NM_173189, intron 12 of 13) intron (NM_173189, intron 12 of 13) -23572 NM_007426 11601 Mm.439874 NM_007426 ENSMUSG00000031465 Angpt2 Agpt2|Ang-2|Ang2 angiopoietin 2 0.000000 0.426752 1.046999 chr12-672 chr12 89894498 89894654 + 25.4 NA intron (NM_172544, intron 8 of 19) intron (NM_172544, intron 8 of 19) 427708 NM_172544 18191 Mm.477211 NM_172544 ENSMUSG00000066392 Nrxn3 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e neurexin III 0.019231 0.490446 -0.176556 chr8-445 chr8 12030852 12031008 + 25.4 NA Intergenic Intergenic 190438 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 1700018L24Rik - RIKEN cDNA 1700018L24 gene 0.025641 0.464968 0.931201 chr11-794 chr11 81497136 81497292 + 25.4 NA intron (NM_001034013, intron 1 of 9) intron (NM_001034013, intron 1 of 9) -107480 NM_001033765 237880 Mm.435528 NM_001033765 1700071K01Rik - RIKEN cDNA 1700071K01 gene 0.006410 0.433121 0.606654 chr12-742 chr12 113658928 113659084 + 25.4 NA Intergenic MMVL30-int|LTR|ERV1 25296 NM_153776 69195 Mm.313244 NM_153776 ENSMUSG00000049036 Tmem121 2410008J05Rik|Hole transmembrane protein 121 0.025641 0.541401 0.954541 chr1-1043 chr1 134937500 134937656 + 25.4 NA Intergenic Intergenic -21133 NM_133819 108954 Mm.293628 NM_133819 ENSMUSG00000046062 Ppp1r15b 1810033K10Rik|AI606441|C530022L24Rik|CReP protein phosphatase 1, regulatory (inhibitor) subunit 15b 0.044872 0.484076 1.929090 chr4-750 chr4 107048149 107048305 + 25.4 NA intron (NM_147221, intron 2 of 10) intron (NM_147221, intron 2 of 10) 115577 NM_147221 230587 Mm.331757 NM_147221 ENSMUSG00000034762 Glis1 Gli5|Gli6|GliH1 GLIS family zinc finger 1 0.012821 0.458599 4.360359 chr11-824 chr11 89040772 89040928 + 25.4 NA Intergenic Intergenic 77799 NM_008711 18121 Mm.135266 NM_008711 ENSMUSG00000048616 Nog - noggin 0.012821 0.515924 1.535135 chr17-392 chr17 5752363 5752519 + 25.4 NA Intergenic Intergenic -45420 NM_025664 66616 Mm.89515 NM_025664 ENSMUSG00000002365 Snx9 2700073N08Rik|SDP1|SH3PX1 sorting nexin 9 0.006410 0.445860 -4.523882 chr10-460 chr10 31189221 31189377 + 25.4 NA Intergenic Intergenic -53962 NM_009413 21987 Mm.439966 NM_009413 ENSMUSG00000000296 Tpd52l1 D53 tumor protein D52-like 1 0.012821 0.337580 -3.516886 chr4-699 chr4 83903449 83903605 + 25.4 NA intron (NM_172870, intron 2 of 5) intron (NM_172870, intron 2 of 5) 242790 NM_172870 242509 Mm.190774 NM_172870 ENSMUSG00000028487 Bnc2 5031434M05Rik|8430420F16Rik|MGC124423|MGC124424 basonuclin 2 0.000000 0.401274 2.842952 chr2-824 chr2 118361476 118361632 + 25.4 NA intron (NM_001033254, intron 2 of 10) intron (NM_001033254, intron 2 of 10) 6537 NM_001033254 214230 Mm.241857 NM_001033254 ENSMUSG00000074923 Pak6 4732456M09 p21 protein (Cdc42/Rac)-activated kinase 6 0.000000 0.464968 2.147045 chr1-1060 chr1 153844739 153844895 + 25.4 NA intron (NM_197990, intron 1 of 5) intron (NM_197990, intron 1 of 5) 7721 NM_197990 69399 Mm.278031 NM_197990 ENSMUSG00000032666 1700025G04Rik 2610510E02Rik|2900042O04Rik|AV212693|ENSMUSG00000073540|MGC14005 RIKEN cDNA 1700025G04 gene 0.006410 0.452229 -4.649929 chr11-788 chr11 80292701 80292857 + 25.4 NA promoter-TSS (NM_009871) promoter-TSS (NM_009871) -461 NM_009871 12569 Mm.474282 NM_009871 ENSMUSG00000048895 Cdk5r1 Cdk5r|D11Bwg0379e|p25|p35 cyclin-dependent kinase 5, regulatory subunit 1 (p35) 0.096154 0.694268 -4.223723 chr9-708 chr9 94998082 94998238 + 25.4 NA intron (NM_177909, intron 14 of 15) intron (NM_177909, intron 14 of 15) 218462 NM_018763 54371 Mm.212446 XM_001471695 ENSMUSG00000033350 Chst2 AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st carbohydrate sulfotransferase 2 0.025641 0.509554 -4.791725 chr14-288 chr14 100222401 100222557 + 25.4 NA Intergenic Intergenic -139278 NM_029680 76627 Mm.31415 XM_001472418 ENSMUSG00000042888 1700110M21Rik - RIKEN cDNA 1700110M21 gene 0.006410 0.433121 -2.902530 chr15-360 chr15 55028425 55028581 + 25.4 NA intron (NM_001037937, intron 4 of 8) intron (NM_001037937, intron 4 of 8) 64985 NM_001037937 97998 Mm.393497 NM_001037937 ENSMUSG00000022419 Depdc6 4731402B04Rik|9130412E02Rik|D15Ertd336e|D15Ertd597e|Depdc6-001|Depdc6-002|KIAA4200|R75183|mKIAA4200 DEP domain containing 6 0.019231 0.503185 1.436034 chr16-342 chr16 36388646 36388802 + 25.4 NA Intergenic RSINE1|SINE|B4 -14093 NM_025288 20863 Mm.136573 NM_025288 ENSMUSG00000054905 Stfa3 MGC130145|MGC130146|Stf3 stefin A3 0.025641 0.515924 -2.957690 chr6-530 chr6 61193086 61193242 + 25.4 NA intron (NM_183310, intron 1 of 10) intron (NM_183310, intron 1 of 10) 83262 NM_183310 232035 Mm.376946 XM_908676 ENSMUSG00000039578 Fam190a 6230405M12Rik|C130092O11Rik|MGC130404|MGC130405 family with sequence similarity 190, member A 0.006410 0.356688 -5.197664 chr2-685 chr2 26743702 26743858 + 25.4 NA 3' UTR (NM_011512, exon 6 of 6) 3' UTR (NM_011512, exon 6 of 6) -5241 NM_013677 20930 Mm.347512 NM_013677 ENSMUSG00000015790 Surf1 0610010F23Rik|Surf-1 surfeit gene 1 0.019231 0.471338 1.562723 chr19-235 chr19 36599535 36599691 + 25.4 NA Intergenic Intergenic -20169 NM_172637 226098 Mm.61107 NM_001163471 ENSMUSG00000041180 Hectd2 4921524L07|A630025O09Rik|AW212605 HECT domain containing 2 0.044872 0.547771 3.336937 chr9-619 chr9 52539112 52539268 + 25.4 NA Intergenic L1M4c|LINE|L1 -97366 NM_178906 330941 Mm.335160 NM_177907 ENSMUSG00000078307 AI593442 E130102D23|MGC130101 expressed sequence AI593442 0.012821 0.439490 -1.928760 chr4-655 chr4 47957743 47957899 + 25.4 NA Intergenic L1ME2|LINE|L1 -114526 NM_015743 18124 Mm.247261 NM_015743 ENSMUSG00000028341 Nr4a3 AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC nuclear receptor subfamily 4, group A, member 3 0.019231 0.401274 0.368772 chr3-653 chr3 153292614 153292770 + 25.4 NA intron (NM_011372, intron 3 of 4) intron (NM_011372, intron 3 of 4) 369827 NM_011372 20447 Mm.440929 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.025641 0.414013 -3.755269 chr14-234 chr14 30903972 30904128 + 25.4 NA Intergenic Intergenic 10624 NM_172254 105638 Mm.2519 NM_001047433 ENSMUSG00000021905 Dph3 2610018L09Rik|5730511P15Rik|AL022916|AV083614|DELGIP1|DelgipP1|Desr1|Zcsl2 DPH3 homolog (KTI11, S. cerevisiae) 0.006410 0.522293 1.813434 chr17-556 chr17 84617813 84617969 + 25.4 NA intron (NM_028233, intron 34 of 37) intron (NM_028233, intron 34 of 37) 26435 NM_026180 67470 Mm.26581 NM_026180 ENSMUSG00000024254 Abcg8 1300003C16Rik|AI114946|sterolin-2 ATP-binding cassette, sub-family G (WHITE), member 8 0.032051 0.515924 1.063548 chr11-663 chr11 7519946 7520102 + 25.4 NA Intergenic Intergenic -406098 NM_008343 16009 Mm.29254 NM_008343 ENSMUSG00000020427 Igfbp3 AI649005|IGFBP-3|IGgfbp3 insulin-like growth factor binding protein 3 0.012821 0.350318 2.746919 chr8-529 chr8 73578305 73578461 + 25.4 NA 3' UTR (NM_023217, exon 5 of 5) 3' UTR (NM_023217, exon 5 of 5) 10287 NM_023217 66522 Mm.154906 NM_023217 ENSMUSG00000056204 Pgpep1 2810003H13Rik|PGP|PGP-I|PGPI|Pcp pyroglutamyl-peptidase I 0.012821 0.503185 3.103114 chr12-524 chr12 13282783 13282939 + 25.4 NA Intergenic Intergenic -7699 NM_134040 104721 Mm.251255 NM_134040 ENSMUSG00000037149 Ddx1 AA409185|DBP-RB DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 0.000000 0.414013 -10.390684 chr6-626 chr6 114867033 114867189 + 25.4 NA intron (NM_177683, intron 1 of 4) intron (NM_177683, intron 1 of 4) 20260 NM_177683 232334 Mm.446323 NM_177683 ENSMUSG00000030315 Vgll4 BC048841|MGC54805|VGL-4 vestigial like 4 (Drosophila) 0.032051 0.471338 2.247545 chr9-770 chr9 123281031 123281187 + 25.4 NA intron (NM_153168, intron 11 of 20) intron (NM_153168, intron 11 of 20) -46289 NM_013860 29806 Mm.10987 NM_013860 ENSMUSG00000025239 Limd1 AW822033|D9Ertd192e LIM domains containing 1 0.012821 0.356688 1.227027 chr3-621 chr3 130680505 130680661 + 25.4 NA Intergenic Intergenic 18016 NM_025509 66357 Mm.300697 NM_025509 ENSMUSG00000041084 Ostc 2310008M10Rik|5730557H03Rik oligosaccharyltransferase complex subunit 0.025641 0.541401 -5.462716 chr17-492 chr17 42822768 42822924 + 25.4 NA Intergenic Intergenic -31270 NM_001081178 224792 Mm.23478 NM_001081178 ENSMUSG00000056492 Gpr116 8430401C09Rik|9330185D23|AI528491|mKIAA0758 G protein-coupled receptor 116 0.012821 0.439490 0.249862 chr1-1096 chr1 167296553 167296709 + 25.4 NA intron (NM_028759, intron 1 of 18) intron (NM_028759, intron 1 of 18) 507 NM_028759 74106 Mm.227605 XM_917541 ENSMUSG00000026571 Dcaf6 1200006M05Rik|Iqwd1|PC326 DDB1 and CUL4 associated factor 6 0.102564 0.719745 -2.523620 chr5-766 chr5 28861409 28861565 + 25.4 NA intron (NR_015562, intron 1 of 6) intron (NR_015562, intron 1 of 6) -63599 NM_009170 20423 Mm.57202 NM_009170 ENSMUSG00000002633 Shh 9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081 sonic hedgehog 0.006410 0.464968 -4.291199 chr16-390 chr16 93197717 93197873 + 25.4 NA Intergenic (CCCA)n|Simple_repeat|Simple_repeat -60464 NR_030429 791074 NR_030429 Mir802 Mirn802|mir-802|mmu-mir-802 microRNA 802 0.000000 0.656051 -12.940143 chr1-837 chr1 34243264 34243420 + 25.4 NA intron (NM_134448, intron 93 of 97) intron (NM_134448, intron 93 of 97) 140876 NM_027159 69668 Mm.379170 NM_027159 ENSMUSG00000042111 Ccdc115 2310061I09Rik|Ccp1 coiled-coil domain containing 115 0.057692 0.490446 0.013079 chr17-399 chr17 9170741 9170897 + 25.4 NA Intergenic Intergenic -164623 NR_027881 67791 Mm.158175 NR_027881 6530411M01Rik - RIKEN cDNA 6530411M01 gene 0.006410 0.382166 -2.930143 chr9-595 chr9 44085509 44085665 + 25.4 NA promoter-TSS (NM_010436) promoter-TSS (NM_010436) -122 NM_010436 15270 Mm.245931 NM_010436 ENSMUSG00000049932 H2afx AW228881|H2A.X|H2ax|Hist5-2ax H2A histone family, member X 0.051282 0.509554 -3.637547 chr6-625 chr6 114778053 114778209 + 25.4 NA intron (NM_028835, intron 18 of 18) intron (NM_028835, intron 18 of 18) 109240 NM_177683 232334 Mm.446323 NM_177683 ENSMUSG00000030315 Vgll4 BC048841|MGC54805|VGL-4 vestigial like 4 (Drosophila) 0.019231 0.496815 -2.772156 chr9-732 chr9 110126394 110126402 + 25.4 NA Intergenic RMER19B|LTR|ERVK -23960 NM_001081381 72341 Mm.374250 XM_135177 ENSMUSG00000054836 2610002I17Rik 2610001P13Rik|AV159994|Tmem103 RIKEN cDNA 2610002I17 0.000000 0.111111 -10000000000.000000 chr9-741 chr9 114969444 114969600 + 25.4 NA intron (NM_148958, intron 2 of 9) intron (NM_148958, intron 2 of 9) 53546 NM_148958 74486 Mm.458474 NM_148958 ENSMUSG00000040875 Osbpl10 4933433D06Rik|C820004B04Rik|OPR-10 oxysterol binding protein-like 10 0.038462 0.547771 -2.875700 chr12-716 chr12 109205592 109205748 + 25.4 NA Intergenic CpG -35447 NM_009537 22632 Mm.458511 NM_009537 ENSMUSG00000021264 Yy1 AW488674|NF-E1 YY1 transcription factor 0.096154 0.649682 -2.099898 chr10-492 chr10 69064676 69064832 + 25.4 NA intron (NM_170730, intron 1 of 17) intron (NM_170730, intron 1 of 17) 135690 NM_146005 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G|MGC14049 ankyrin 3, epithelial 0.006410 0.426752 -4.173822 chr2-746 chr2 63164682 63164838 + 25.4 NA Intergenic Intergenic -179634 NM_133207 170738 Mm.242532 NM_133207 ENSMUSG00000059742 Kcnh7 9330137I11Rik|Kv11.3|erg3 potassium voltage-gated channel, subfamily H (eag-related), member 7 0.012821 0.445860 -8.439367 chr6-650 chr6 125137758 125137914 + 25.4 NA intron (NM_146171, intron 22 of 31) intron (NM_146171, intron 22 of 31) -6634 NM_008084 14433 Mm.475698 NM_008084 ENSMUSG00000057666 Gapdh Gapd|MGC102544|MGC102546|MGC103190|MGC103191|MGC105239 glyceraldehyde-3-phosphate dehydrogenase 0.032051 0.490446 2.013508 chr8-549 chr8 89945682 89945838 + 25.4 NA Intergenic Intergenic -170397 NM_030563 80750 Mm.428374 XM_894155 N4bp1 AI481586|C81621|MGC7607 NEDD4 binding protein 1 0.025641 0.401274 0.249862 chr7-430 chr7 37226180 37226336 + 25.4 NA intron (NM_172385, intron 4 of 5) intron (NM_172385, intron 4 of 5) 252254 NM_172385 243937 Mm.388121 NM_172385 ENSMUSG00000043456 Zfp536 9630010P11Rik|Znf536|mKIAA0390 zinc finger protein 536 0.025641 0.547771 0.227982 chr8-599 chr8 126623256 126623412 + 25.4 NA Intergenic Intergenic -68751 NM_009003 19341 Mm.9221 NM_009003 ENSMUSG00000019478 Rab4a AI848268|Rab4 RAB4A, member RAS oncogene family 0.019231 0.541401 -8.197721 chr2-778 chr2 76947253 76947409 + 25.4 NA intron (NM_001025576, intron 2 of 23) intron (NM_001025576, intron 2 of 23) 24143 NM_001025576 545428 Mm.26579 NM_001025576 ENSMUSG00000044033 Ccdc141 2610301F02Rik|ENSMUSG00000075261 coiled-coil domain containing 141 0.012821 0.484076 2.813435 chr4-735 chr4 103554880 103555036 + 25.4 NA Intergenic B3|SINE|B2 -310533 NM_010014 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled homolog 1 (Drosophila) 0.006410 0.515924 -0.277935 chr9-700 chr9 86759808 86759964 + 25.4 NA Intergenic Intergenic -53596 NM_001037907 382089 Mm.92244 XM_918212 ENSMUSG00000047897 Ripply2 C030002E08Rik|Gm1122 ripply2 homolog (zebrafish) 0.012821 0.484076 -4.652708 chr5-941 chr5 120777508 120777664 + 25.4 NA intron (NM_001177595, intron 2 of 13) intron (NM_001177595, intron 2 of 13) 5778 NM_133221 170756 Mm.291070 NM_001177594 ENSMUSG00000032754 Slc24a6 AF261233|NCKX6|NCLX solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 0.012821 0.509554 -0.498564 chr7-564 chr7 127758229 127758385 + 25.4 NA promoter-TSS (NM_139149) promoter-TSS (NM_139149) -319 NM_139149 233908 Mm.277680 NM_139149 ENSMUSG00000030795 Fus D430004D17Rik|D930039C12Rik|Fus1|Tls fusion, derived from t(12;16) malignant liposarcoma (human) 0.076923 0.675159 0.712203 chr8-590 chr8 125255888 125256044 + 25.4 NA Intergenic Intergenic -6739 NM_001029994 76014 Mm.241489 NM_001029993 ENSMUSG00000017478 Zc3h18 1190001B23Rik|5830416A07Rik|Nhn1 zinc finger CCCH-type containing 18 0.019231 0.464968 -4.351465 chr8-478 chr8 28670282 28670438 + 25.4 NA Intergenic Intergenic -1877 NM_029674 76615 Mm.272794 NM_029674 ENSMUSG00000039720 Got1l1 1700083M11Rik glutamic-oxaloacetic transaminase 1-like 1 0.006410 0.541401 -8.694493 chr13-438 chr13 63331131 63331287 + 25.4 NA exon (NM_001042673, exon 13 of 16) exon (NM_001042673, exon 13 of 16) 20780 NR_029575 387142 NR_029575 Mir24-1 Mirn189|Mirn24|Mirn24-1|miR-189|miR-24|miR-24-1 microRNA 24-1 0.019231 0.541401 2.746919 chr17-453 chr17 28773748 28773904 + 25.4 NA Intergenic Intergenic 13487 NM_013663 20383 Mm.6787 NM_013663 ENSMUSG00000071172 Srsf3 AL024116|Sfrs3|X16 serine/arginine-rich splicing factor 3 0.019231 0.535032 -5.359546 chr11-859 chr11 101098930 101099086 + 25.4 NA intron (NM_026562, intron 1 of 6) intron (NM_026562, intron 1 of 6) 3716 NM_026562 68107 Mm.262369 NM_026562 ENSMUSG00000078653 Cntd1 1700051C09Rik|4921513J16Rik|5430417M23Rik|Cntd|MGC11788 cyclin N-terminal domain containing 1 0.019231 0.503185 3.231090 chr10-542 chr10 90553737 90553893 + 25.4 NA promoter-TSS (NM_133668) promoter-TSS (NM_133668) -53 NM_133668 18674 Mm.298 NM_133668 ENSMUSG00000061904 Slc25a3 5730556H19Rik|PTP|Phc solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 0.141026 0.675159 -5.046807 chr17-385 chr17 3039325 3039353 + 25.4 NA intron (NR_003519, intron 1 of 7) intron (NR_003519, intron 1 of 7) 1326 NR_003519 328734 Mm.335641 XM_001474127 Pisd-ps2 D030013I16Rik phosphatidylserine decarboxylase, pseudogene 2 0.000000 0.517241 -18.290236 chr12-662 chr12 86860852 86861008 + 25.4 NA intron (NM_001081423, intron 29 of 33) intron (NM_001081423, intron 29 of 33) 107214 NM_009368 21809 Mm.3992 NM_009368 ENSMUSG00000021253 Tgfb3 MGC118722|Tgfb-3 transforming growth factor, beta 3 0.012821 0.541401 -2.576608 chr11-873 chr11 106088844 106089000 + 25.4 NA 5' UTR (NM_001130187, exon 1 of 13) 5' UTR (NM_001130187, exon 1 of 13) 140 NM_001130187 83796 Mm.21772 NM_001130187 ENSMUSG00000078619 Smarcd2 AW322457|Baf60b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 0.096154 0.598726 -2.076319 chr8-522 chr8 71786384 71786540 + 25.4 NA Intergenic Intergenic -23081 NM_008509 16956 Mm.1514 NM_008509 ENSMUSG00000015568 Lpl - lipoprotein lipase 0.006410 0.407643 -3.151336 chr19-223 chr19 27224843 27224999 + 25.4 NA Intergenic Intergenic -59195 NM_013703 22359 Mm.4141 NM_001161420 ENSMUSG00000024924 Vldlr AA408956|AI451093|AW047288 very low density lipoprotein receptor 0.019231 0.426752 -7.932007 chr17-405 chr17 10881794 10881950 + 25.4 NA intron (NM_016694, intron 1 of 11) intron (NM_016694, intron 1 of 11) 198131 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 MGC130518|PRKN Parkinson disease (autosomal recessive, juvenile) 2, parkin 0.000000 0.509554 -4.925023 chr6-648 chr6 124706997 124707132 + 25.4 NA promoter-TSS (NM_013535) promoter-TSS (NM_013535) -366 NM_013535 14790 Mm.439877 NM_013535 ENSMUSG00000072772 Grcc10 2310033H05Rik|C10 gene rich cluster, C10 gene 0.037037 0.382353 -3.297749 chr5-799 chr5 45727620 45727776 + 25.4 NA intron (NM_024236, intron 4 of 6) intron (NM_024236, intron 4 of 6) 10779 NM_024236 110391 Mm.30204 NM_024236 ENSMUSG00000015806 Qdpr 2610008L04Rik|D5Ertd371e|Dhpr|PKU2 quinoid dihydropteridine reductase 0.019231 0.522293 -4.624618 chr4-765 chr4 116074932 116075088 + 25.4 NA intron (NM_029868, intron 5 of 11) intron (NM_029868, intron 5 of 11) 19352 NM_029868 77110 Mm.480391 NM_029868 ENSMUSG00000034042 Gpbp1l1 5330440M15Rik|BC002292|MGC8183 GC-rich promoter binding protein 1-like 1 0.006410 0.375796 -0.660600 chr1-1055 chr1 140779707 140779863 + 25.4 NA promoter-TSS (NM_001166501) promoter-TSS (NM_001166501) -334 NM_001166501 329260 Mm.475093 NM_001166501 ENSMUSG00000056268 Dennd1b 4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik|MGC51484 DENN/MADD domain containing 1B 0.038462 0.585987 -4.529067 chr17-562 chr17 86518605 86518761 + 25.4 NA intron (NM_011104, intron 11 of 14) intron (NM_011104, intron 11 of 14) -143506 NM_010137 13819 Mm.1415 NM_010137 ENSMUSG00000024140 Epas1 HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73 endothelial PAS domain protein 1 0.019231 0.464968 -3.649139 chr4-679 chr4 71609346 71609502 + 25.4 NA intron (NM_011599, intron 16 of 19) intron (NM_011599, intron 16 of 19) 77856 NM_011599 21885 Mm.399716 NM_011599 ENSMUSG00000008305 Tle1 C230057C06Rik|Estm14|Grg1|Tle4l transducin-like enhancer of split 1, homolog of Drosophila E(spl) 0.006410 0.522293 2.796704 chr1-1071 chr1 158213154 158213310 + 25.4 NA exon (NM_001033180, exon 10 of 11) exon (NM_001033180, exon 10 of 11) 23435 NM_001033180 77352 Mm.444849 NM_001033180 ENSMUSG00000026601 9430070O13Rik Gm979 RIKEN cDNA 9430070O13 gene 0.025641 0.394904 -3.623418 chr14-197 chr14 7007912 7008068 + 25.4 NA promoter-TSS (NM_027782) promoter-TSS (NM_027782) 87 NM_027782 71393 Mm.292712 NM_027782 ENSMUSG00000021752 Kctd6 5430433B02Rik|AU044285 potassium channel tetramerisation domain containing 6 0.217949 0.859873 -10.279305 chr9-712 chr9 96606827 96606983 + 25.4 NA Intergenic Intergenic -44722 NR_015511 319859 Mm.259909 NM_177020 E030011O05Rik - RIKEN cDNA E030011O05 gene 0.006410 0.484076 -4.657206 chr12-596 chr12 66439871 66440027 + 25.4 NA Intergenic RMER19B|LTR|ERVK 295828 NM_027614 70948 Mm.219475 NM_027614 ENSMUSG00000035560 Wdr20b 4921538B03Rik|4930427E19Rik|Wdr20 WD repeat domain 20b 0.000000 0.535032 -3.072854 chr14-204 chr14 11752791 11752947 + 25.4 NA Intergenic Intergenic -136523 NM_012061 27062 Mm.260881 NM_001042617 ENSMUSG00000054423 Cadps AU067781|CAPS|CAPS1|MGC90712|mKIAA1121 Ca2+-dependent secretion activator 0.000000 0.426752 -10.388550 chr9-574 chr9 28552552 28552708 + 25.4 NA intron (NM_177906, intron 3 of 7) intron (NM_177906, intron 3 of 7) 1011916 NM_177906 330908 Mm.379474 NM_177906 ENSMUSG00000062257 Opcml 2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|MGC99974|Obcam opioid binding protein/cell adhesion molecule-like 0.000000 0.305732 -5.336137 chr11-770 chr11 74540580 74540736 + 25.4 NA promoter-TSS (NM_013625) promoter-TSS (NM_013625) -79 NM_013625 18472 Mm.397111 XM_001476465 ENSMUSG00000020745 Pafah1b1 LIS-1|Lis1|MGC25297|MMS10-U|Mdsh|Ms10u|Pafaha platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 0.141026 0.815287 -7.472734 chr3-544 chr3 88135546 88135702 + 25.4 NA intron (NM_025663, intron 2 of 8) intron (NM_025663, intron 2 of 8) 6590 NM_025663 66614 Mm.46029 NM_001110809 ENSMUSG00000028069 Gpatch4 2610029K21Rik|Gpatc4 G patch domain containing 4 0.012821 0.445860 -0.911681 chr13-452 chr13 84085976 84086132 + 25.4 NA intron (NM_025282, intron 4 of 10) intron (NM_025282, intron 4 of 10) 104684 NM_025282 17260 Mm.451574 NM_001170537 ENSMUSG00000005583 Mef2c 5430401D19Rik|9930028G15Rik|AV011172|Mef2 myocyte enhancer factor 2C 0.006410 0.452229 1.592391 chr7-510 chr7 109912668 109912824 + 25.4 NA promoter-TSS (NM_009516) promoter-TSS (NM_009516) -489 NM_009516 22390 Mm.287173 NM_009516 ENSMUSG00000031016 Wee1 - WEE 1 homolog 1 (S. pombe) 0.064103 0.585987 -7.840951 chr7-421 chr7 30438272 30438428 + 25.4 NA promoter-TSS (NM_027215) promoter-TSS (NM_027215) -56 NM_027215 69804 Mm.27499 NM_027215 ENSMUSG00000006315 Tmem147 2010004E11Rik|5033425B17Rik|MGC6895|Nifie14 transmembrane protein 147 0.089744 0.617834 5.970716 chr9-617 chr9 52196219 52196375 + 25.4 NA Intergenic Intergenic 245527 NM_178906 330941 Mm.335160 NM_177907 ENSMUSG00000078307 AI593442 E130102D23|MGC130101 expressed sequence AI593442 0.006410 0.445860 -7.120106 chr1-1039 chr1 134304602 134304758 + 25.4 NA promoter-TSS (NM_172517) promoter-TSS (NM_172517) -232 NM_172517 213464 Mm.132868 NM_172517 ENSMUSG00000026439 Rbbp5 4933411J24Rik|C330016J05 retinoblastoma binding protein 5 0.051282 0.496815 -4.038605 chr12-534 chr12 21407089 21407245 + 25.4 NA intron (NM_001004364, intron 1 of 26) intron (NM_001004364, intron 1 of 26) 48922 NM_001098168 211914 Mm.358946 NM_001004364 ENSMUSG00000052632 Asap2 Ddef2|Gm1523|Gm592|MGC90837 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 0.012821 0.439490 0.500623 chr9-604 chr9 47333818 47333974 + 25.4 NA intron (NM_001025600, intron 1 of 8) intron (NM_001025600, intron 1 of 8) 52550 NM_018770 54725 Mm.234832 NM_001025600 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 cell adhesion molecule 1 0.012821 0.350318 -4.128313 chr5-892 chr5 108227503 108227659 + 25.4 NA promoter-TSS (NM_026062) promoter-TSS (NM_026062) -202 NM_026062 67266 Mm.480596 NM_026062 ENSMUSG00000029270 Fam69a 2900024C23Rik|AI315274|MGC144843 family with sequence similarity 69, member A 0.153846 0.726115 -7.553538 chr14-273 chr14 73794831 73794987 + 25.4 NA Intergenic Intergenic 44728 NM_198642 271221 Mm.320280 NM_198642 ENSMUSG00000034959 5031414D18Rik Gm744|Gm911|MGC60829 RIKEN cDNA 5031414D18 gene 0.019231 0.433121 -4.656107 chr15-320 chr15 25288057 25288213 + 25.4 NA Intergenic B4A|SINE|B4 70354 NM_027395 70350 Mm.29586 NM_027395 ENSMUSG00000045763 Basp1 2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 0.006410 0.535032 -6.013055 chr1-878 chr1 53143304 53143460 + 25.4 NA intron (NM_153556, intron 9 of 12) intron (NM_153556, intron 9 of 12) -11220 NM_027070 69397 Mm.307084 XM_892538 ENSMUSG00000060715 1700019A02Rik - RIKEN cDNA 1700019A02 gene 0.025641 0.356688 -5.169166 chr1-990 chr1 95576780 95576936 + 25.4 NA intron (NM_025920, intron 2 of 5) intron (NM_025920, intron 2 of 5) 8386 NM_025920 67026 Mm.272356 NM_025920 ENSMUSG00000026279 Thap4 2010320B01Rik THAP domain containing 4 0.000000 0.414013 1.179223 chr14-214 chr14 20212327 20212483 + 25.4 NA intron (NM_134079, intron 10 of 10) intron (NM_134079, intron 10 of 10) -76000 NM_017479 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Myst4 AI507552|B130044K16Rik|KAT6B|Morf|mKIAA0383|qkf|querkopf MYST histone acetyltransferase monocytic leukemia 4 0.006410 0.426752 -1.700911 chr10-472 chr10 57650672 57650828 + 25.4 NA promoter-TSS (NM_027375) promoter-TSS (NM_027375) -132 NM_027375 70297 Mm.25531 NM_027375 ENSMUSG00000038039 Gcc2 0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336 GRIP and coiled-coil domain containing 2 0.096154 0.662420 -0.510081 chr3-566 chr3 97301017 97301173 + 25.4 NA intron (NM_029933, intron 1 of 6) intron (NM_029933, intron 1 of 6) 817 NM_029933 77578 Mm.226175 NM_029933 ENSMUSG00000038256 Bcl9 2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130 B-cell CLL/lymphoma 9 0.012821 0.426752 -1.301899 chr2-795 chr2 92654190 92654346 + 25.4 NA Intergenic Intergenic -61671 NM_030725 80976 Mm.33490 NM_030725 ENSMUSG00000027220 Syt13 5730409J20Rik|AI549909|mKIAA1427 synaptotagmin XIII 0.000000 0.515924 1.669616 chr2-668 chr2 17965751 17965907 + 25.4 NA exon (NM_028317, exon 1 of 1) exon (NM_028317, exon 1 of 1) 374 NM_028317 72668 Mm.411958 NM_028317 2810030E01Rik 5730507N06Rik|BB088113|MGC59463 RIKEN cDNA 2810030E01 gene 0.083333 0.566879 -5.970067 chr4-632 chr4 41503661 41503817 + 25.4 NA promoter-TSS (NM_026893) promoter-TSS (NM_026893) -167 NM_026893 68970 Mm.28891 NM_026893 ENSMUSG00000028436 Dcaf12 1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a DDB1 and CUL4 associated factor 12 0.032051 0.554140 -4.423164 chr1-851 chr1 37485316 37485472 + 25.4 NA Intergenic CpG -4589 NM_173870 269181 Mm.447744 NM_173870 ENSMUSG00000026110 Mgat4a 9530018I07Rik|GnT-IVa mannoside acetylglucosaminyltransferase 4, isoenzyme A 0.179487 0.815287 -2.077904 chr17-532 chr17 63185899 63186055 + 25.4 NA promoter-TSS (NM_015794) promoter-TSS (NM_015794) 65 NM_015794 50758 Mm.136366 XM_001478436 ENSMUSG00000023965 Fbxl17 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 F-box and leucine-rich repeat protein 17 0.134615 0.770701 -5.768445 chr11-675 chr11 19987434 19987590 + 25.4 NA intron (NM_146243, intron 4 of 8) intron (NM_146243, intron 4 of 8) 25442 NM_146243 66713 Mm.259045 NM_146243 ENSMUSG00000020152 Actr2 4921510D23Rik|AA409782|Arp2|D6Ertd746e|MGC36604 ARP2 actin-related protein 2 homolog (yeast) 0.012821 0.407643 -5.809155 chr12-603 chr12 70918854 70919010 + 25.4 NA Intergenic L1MD3|LINE|L1 -13325 NM_022028 64010 Mm.390480 NM_022028 ENSMUSG00000021067 Sav1 1700040G09Rik|Sav|WW45|Wwp3|Wwp4 salvador homolog 1 (Drosophila) 0.006410 0.426752 -7.414282 chr5-988 chr5 136994472 136994628 + 25.4 NA Intergenic Intergenic 15747 NM_001085387 59310 Mm.5178 NM_001085387 ENSMUSG00000005474 Myl10 1700027I08Rik|Mylc2pl|PLRLC|PLRLC-A|PLRLC-B|PLRLC-C myosin, light chain 10, regulatory 0.000000 0.464968 -2.029453 chr1-931 chr1 75012485 75012641 + 25.4 NA intron (NM_194333, intron 8 of 11) intron (NM_194333, intron 8 of 11) -4129 NM_029342 75570 Mm.439736 NM_029342 ENSMUSG00000026162 Nhej1 1700029B21Rik|MGC130191|MGC130192|XLF|cernunnos nonhomologous end-joining factor 1 0.019231 0.522293 5.843212 chr11-682 chr11 22338051 22338207 + 25.4 NA Intergenic Intergenic -74156 NM_153596 103765 Mm.221274 NM_153596 ENSMUSG00000049904 Tmem17 AI503894|AW049890|MGC40971 transmembrane protein 17 0.006410 0.503185 -0.930621 chr6-471 chr6 28965597 28965753 + 25.4 NA Intergenic Intergenic -6953 NR_029567 387237 NR_029567 Mir129-1 Mirn129-1|Mirn129b|miR-129b microRNA 129-1 0.019231 0.484076 3.558889 chr1-993 chr1 97504176 97504332 + 25.4 NA Intergenic Intergenic -6254 NM_001159745 20452 Mm.306228 NM_001159745 ENSMUSG00000040710 St8sia4 PST|PST-1|ST8SiaIV|Siat8d ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 0.006410 0.382166 1.652840 chr3-602 chr3 122266219 122266375 + 25.4 NA promoter-TSS (NM_153806) promoter-TSS (NM_153806) -138 NM_153806 99480 Mm.398647 NM_153806 ENSMUSG00000039756 Dnttip2 4930588M11Rik|AA408582|AU014960|HSU15552|MGC27716 deoxynucleotidyltransferase, terminal, interacting protein 2 0.083333 0.668790 -7.290649 chr8-547 chr8 89296666 89296822 + 25.4 NA Intergenic Intergenic 159951 NM_172912 244562 Mm.67485 NM_172912 ENSMUSG00000036872 Abcc12 4930467B22Rik|MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 0.006410 0.458599 0.652261 chr3-560 chr3 96354995 96355151 + 25.4 NA promoter-TSS (NM_175666) promoter-TSS (NM_175666) -31 NM_175666 319189 Mm.451071 NM_175666 Hist2h2bb H2b-616 histone cluster 2, H2bb 0.064103 0.464968 -0.486127 chr1-870 chr1 51511963 51512119 + 25.4 NA Intergenic B3A|SINE|B2 -89097 NM_028696 109019 Mm.196290 NM_028696 ENSMUSG00000026107 Obfc2a 4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nabp1|Nbp1 oligonucleotide/oligosaccharide-binding fold containing 2A 0.019231 0.471338 -4.094776 chr19-205 chr19 10371372 10371528 + 25.4 NA intron (NM_198114, intron 1 of 19) intron (NM_198114, intron 1 of 19) 472 NM_198114 269060 Mm.329718 NM_198114 ENSMUSG00000035735 Dagla KIAA0659|Nsddr diacylglycerol lipase, alpha 0.012821 0.566879 -4.857333 chr6-608 chr6 99956650 99956806 + 25.4 NA Intergenic Intergenic -264873 NM_001170419 50501 Mm.87365 NM_001037539 ENSMUSG00000030069 Prok2 Bv8|PK2|Prok1 prokineticin 2 0.012821 0.503185 -3.646071 chr13-430 chr13 59245667 59245823 + 25.4 NA Intergenic Intergenic 321197 NM_001048008 67269 Mm.212923 NM_001048008 ENSMUSG00000021557 Agtpbp1 1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|BB114605|CCP1|MGC90651|Nna1|mKIAA1035|nmf243|pcd ATP/GTP binding protein 1 0.038462 0.541401 -2.604326 chr4-715 chr4 91784441 91784597 + 25.4 NA Intergenic Lx3A|LINE|L1 -145280 NM_027034 69314 Mm.55891 XM_131510 ENSMUSG00000028533 Izumo3 1700011H22Rik IZUMO family member 3 0.000000 0.401274 1.784676 chr1-890 chr1 60805242 60805398 + 25.4 NA Intergenic Intergenic -48250 NM_009843 12477 Mm.390 XM_001479130 ENSMUSG00000026011 Ctla4 Cd152|Ctla-4|Ly-56 cytotoxic T-lymphocyte-associated protein 4 0.000000 0.464968 -4.289897 chr2-911 chr2 173433389 173433545 + 25.4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 52958 NM_019806 56491 Mm.260456 NM_019806 ENSMUSG00000054455 Vapb AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b vesicle-associated membrane protein, associated protein B and C 0.038462 0.592357 -7.353360 chr11-880 chr11 108362814 108362970 + 25.4 NA intron (NM_029606, intron 18 of 27) intron (NM_029606, intron 18 of 27) 121537 NM_029606 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Ccdc46 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351 coiled-coil domain containing 46 0.012821 0.394904 -3.453495 chr5-883 chr5 103036468 103036624 + 25.4 NA intron (NM_029270, intron 3 of 9) intron (NM_029270, intron 3 of 9) 314854 NM_029270 231532 Mm.477263 NM_029270 ENSMUSG00000057315 Arhgap24 0610025G21Rik|MGC38749 Rho GTPase activating protein 24 0.012821 0.401274 -4.381211 chr15-419 chr15 91693709 91693865 + 25.4 NA intron (NM_207243, intron 1 of 42) intron (NM_207243, intron 1 of 42) 27693 NM_198927 223809 Mm.46386 NM_198927 ENSMUSG00000047295 Smgc 2310010P21Rik|DXImx49e|Muc19|Sfc21 submandibular gland protein C 0.006410 0.414013 -7.496723 chr6-494 chr6 40083488 40083644 + 25.4 NA intron (NM_001004182, intron 1 of 2) intron (NM_001004182, intron 1 of 2) 43707 NM_001004182 434008 Mm.130209 NM_001004182 ENSMUSG00000057716 Gm5567 EG434008 predicted gene 5567 0.006410 0.426752 -4.963181 chr7-575 chr7 132624964 132625120 + 25.4 NA intron (NM_212473, intron 1 of 4) intron (NM_212473, intron 1 of 4) 236 NM_175268 77938 Mm.225649 NM_175268 ENSMUSG00000030956 Fam53b A930008G19Rik|MGC40647|mKIAA0140 family with sequence similarity 53, member B 0.006410 0.496815 0.828837 chr4-662 chr4 57909448 57909604 + 25.4 NA Intergenic Intergenic -38687 NM_009649 11641 Mm.440076 NM_001035532 ENSMUSG00000038729 Akap2 AA959716|AI649048|AKAP-KL|B230340M18Rik A kinase (PRKA) anchor protein 2 0.006410 0.369427 -0.568783 chrX-123 chrX 146678632 146678788 + 25.4 NA intron (NR_015600, intron 1 of 2) intron (NR_015600, intron 1 of 2) 3885 NR_015600 331547 Mm.441474 NR_015600 A230072E10Rik C130073P14 RIKEN cDNA A230072E10 gene 0.025641 0.509554 -2.072309 chr6-593 chr6 94861989 94862145 + 25.4 NA Intergenic Intergenic -196459 NM_008377 16206 Mm.245210 NM_008377 ENSMUSG00000030029 Lrig1 D6Bwg0781e|Img|LIG-1 leucine-rich repeats and immunoglobulin-like domains 1 0.006410 0.407643 -1.043733 chr10-480 chr10 61374490 61374646 + 25.4 NA promoter-TSS (NM_007731) promoter-TSS (NM_007731) -103 NM_007731 12817 Mm.300931 NM_007731 ENSMUSG00000058806 Col13a1 - collagen, type XIII, alpha 1 0.096154 0.700637 -3.187701 chr10-574 chr10 114788947 114789103 + 25.4 NA promoter-TSS (NM_001033261) promoter-TSS (NM_001033261) -43 NM_001033261 216345 Mm.207621 NM_001033261 ENSMUSG00000034163 Zfc3h1 BC033596|Ccdc131|Psrc2 zinc finger, C3H1-type containing 0.102564 0.675159 -0.988525 chr1-1141 chr1 188287933 188288089 + 25.4 NA Intergenic Intergenic 118769 NM_009367 21808 Mm.18213 NM_009367 ENSMUSG00000039239 Tgfb2 BB105277|Tgf-beta2|Tgfb-2 transforming growth factor, beta 2 0.012821 0.503185 -4.533712 chr6-577 chr6 90686679 90686835 + 25.4 NA intron (NM_001134384, intron 1 of 13) intron (NM_001134384, intron 1 of 13) -4724 NM_001134383 232227 Mm.473438 XM_001479632 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 IQ motif and Sec7 domain 1 0.012821 0.528662 -0.476197 chr4-637 chr4 44124737 44124893 + 25.4 NA Intergenic Intergenic -19538 NM_015828 50798 Mm.256718 NM_001190414 ENSMUSG00000028479 Gne 2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1 glucosamine 0.019231 0.484076 -8.706675 chr2-711 chr2 32643189 32643345 + 25.4 NA intron (NM_001113569, intron 3 of 19) intron (NM_001113569, intron 3 of 19) 25974 NM_009295 20910 Mm.278865 NM_001113569 ENSMUSG00000026797 Stxbp1 AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1 syntaxin binding protein 1 0.012821 0.477707 -3.439675 chr16-347 chr16 42594384 42594540 + 25.4 NA Intergenic Intergenic -280449 NR_002445 170658 Mm.375824 NR_002445 BC002163 - NADH dehydrogenase Fe-S protein 5 pseudogene 0.000000 0.445860 -2.070379 chr12-535 chr12 25250301 25250457 + 25.4 NA 3' UTR (NM_178357, exon 4 of 4) 3' UTR (NM_178357, exon 4 of 4) 9930 NM_178357 194655 Mm.9616 NM_178357 ENSMUSG00000020653 Klf11 9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3 Kruppel-like factor 11 0.006410 0.541401 -1.437408 chr1-1124 chr1 182677071 182677227 + 25.4 NA Intergenic B2_Mm2|SINE|B2 -10676 NM_145943 208768 Mm.272625 NM_145943 ENSMUSG00000038806 BC031781 MGC30618 cDNA sequence BC031781 0.012821 0.407643 -7.014261 chr10-571 chr10 110601300 110601456 + 25.4 NA intron (NM_001003717, intron 1 of 22) intron (NM_001003717, intron 1 of 22) 32467 NM_175489 237542 Mm.220204 NM_001003717 ENSMUSG00000020189 Osbpl8 AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8 oxysterol binding protein-like 8 0.000000 0.375796 -5.568487 chr2-904 chr2 169592465 169592621 + 25.4 NA Intergenic (ATG)n|Simple_repeat|Simple_repeat 169333 NR_033634 100043910 Mm.468546 XM_001478690 A630075F10Rik 4831414D02|Gm4722 RIKEN cDNA A630075F10 gene 0.025641 0.464968 2.062098 chr9-569 chr9 25956449 25956605 + 25.4 NA Intergenic MTD|LTR|MaLR -544480 NM_029792 76898 Mm.218788 NM_029792 ENSMUSG00000045994 B3gat1 0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1|KIAA4235 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) 0.000000 0.388535 -1.065579 chr3-577 chr3 103545393 103545549 + 25.4 NA Intergenic Intergenic 137118 NM_001079830 94093 Mm.195036 NM_001079830 ENSMUSG00000033014 Trim33 8030451N04Rik|AI413936|DKFZp586K1123|Tif1g|mKIAA1113 tripartite motif-containing 33 0.006410 0.394904 -4.708366 chr11-661 chr11 6526085 6526138 + 25.4 NA promoter-TSS (NM_001130457) promoter-TSS (NM_001130457) -41 NM_134011 21379 Mm.247761 NM_001130457 ENSMUSG00000000384 Tbrg4 2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|TB-12|mKIAA0948 transforming growth factor beta regulated gene 4 0.094340 0.759259 -6.058732 chr3-582 chr3 105996301 105996457 + 25.4 NA Intergenic Intergenic -2534 NM_001174169 11542 Mm.235024 NM_001174169 ENSMUSG00000000562 Adora3 1700001D09Rik|4930578J19Rik|A3AR|A3R|AA3R|ARA3|Gpcr2|MGC118217 adenosine A3 receptor 0.006410 0.471338 -5.080914 chr12-565 chr12 40452974 40453130 + 25.4 NA Intergenic Intergenic 94747 NM_007487 11861 Mm.12723 NM_001039515 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A 0.006410 0.401274 -6.199862 chr4-689 chr4 81747342 81747498 + 25.4 NA Intergenic Intergenic 229119 NM_001113210 18028 Mm.317947 NM_001113209 ENSMUSG00000008575 Nfib 6720429L07Rik|E030026I10Rik nuclear factor I/B 0.006410 0.382166 1.328212 chr1-976 chr1 90114199 90114355 + 25.4 NA Intergenic Intergenic -5527 NM_198652 381280 Mm.384762 XM_001471840 ENSMUSG00000044783 Hjurp C330011F01Rik|Gm975|MGC66590|Mfleg1 Holliday junction recognition protein 0.006410 0.464968 -1.245212 chr2-784 chr2 84436296 84436452 + 25.4 NA intron (NM_007615, intron 1 of 19) intron (NM_007615, intron 1 of 19) 14975 NM_001085453 12388 Mm.35738 NM_001085448 ENSMUSG00000034101 Ctnnd1 AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384 catenin (cadherin associated protein), delta 1 0.000000 0.343949 -7.541224 chr11-659 chr11 6316500 6316656 + 25.4 NA intron (NM_008907, intron 1 of 4) intron (NM_008907, intron 1 of 4) 706 NM_008907 268373 Mm.440058 NM_008907 ENSMUSG00000071866 Ppia 2700098C05|Cphn|CyP-18|CypA peptidylprolyl isomerase A 0.044872 0.496815 -6.141241 chr1-1026 chr1 129327913 129328069 + 25.4 NA intron (NM_028135, intron 5 of 7) intron (NM_028135, intron 5 of 7) 177576 NM_028135 72160 Mm.281287 NM_028135 ENSMUSG00000026347 Tmem163 2610024A01Rik|SV31 transmembrane protein 163 0.032051 0.509554 -2.763327 chr1-901 chr1 64672516 64672672 + 25.4 NA promoter-TSS (NM_001042659) promoter-TSS (NM_001042659) -568 NM_022721 14367 Mm.470210 NM_001042659 ENSMUSG00000045005 Fzd5 5330434N09Rik|AI427138|Fz-5|Fz5|MGC141642|mFz5 frizzled homolog 5 (Drosophila) 0.044872 0.458599 0.606654 chr8-480 chr8 32634693 32634849 + 25.4 NA promoter-TSS (NM_026453) promoter-TSS (NM_026453) -112 NM_026453 67920 Mm.289818 NM_026453 ENSMUSG00000031578 Mak16 2600016B03Rik|AI314911|Rbm13 MAK16 homolog (S. cerevisiae) 0.108974 0.649682 1.130578 chr8-496 chr8 44160751 44160907 + 25.4 NA Intergenic Intergenic 479474 NM_177742 244448 Mm.64542 NM_177742 ENSMUSG00000031651 Triml1 4933403D14|BC050188 tripartite motif family-like 1 0.000000 0.433121 -3.616553 chr17-539 chr17 65682450 65682606 + 25.4 NA promoter-TSS (NM_146081) promoter-TSS (NM_146081) -369 NM_001114131 70351 Mm.48686 NM_001114131 ENSMUSG00000061950 Ppp4r1 3110001J10Rik|MGC31567|Pp4r1 protein phosphatase 4, regulatory subunit 1 0.179487 0.796178 -5.062233 chr9-560 chr9 21504976 21505132 + 25.4 NA TTS (NM_026282) TTS (NM_026282) 5634 NM_026282 67629 Mm.295642 NM_026282 ENSMUSG00000074476 Spc24 2410030K01Rik|AV109292|Spbc24 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) 0.012821 0.560510 3.184833 chr12-657 chr12 86719986 86720142 + 25.4 NA intron (NM_001081423, intron 2 of 33) intron (NM_001081423, intron 2 of 33) 6012 NM_001081423 320244 Mm.132172 NM_001081423 ENSMUSG00000012609 Ttll5 1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998 tubulin tyrosine ligase-like family, member 5 0.000000 0.464968 -3.829223 chr5-1021 chr5 144896828 144896984 + 25.4 NA Intergenic Intergenic 97493 NM_016789 53324 Mm.10099 NM_016789 ENSMUSG00000059991 Nptx2 Narp|np2 neuronal pentraxin 2 0.006410 0.439490 -5.491542 chr9-652 chr9 62637360 62637516 + 25.4 NA intron (NM_001033175, intron 1 of 6) intron (NM_001033175, intron 1 of 6) 646 NM_001033175 76524 Mm.283636 NM_001033175 ENSMUSG00000032245 Cln6 1810065L06Rik|AW743417|D9Bwg1455e|nclf ceroid-lipofuscinosis, neuronal 6 0.012821 0.496815 -2.152222 chr13-419 chr13 54574925 54575081 + 25.4 NA promoter-TSS (NM_133797) promoter-TSS (NM_133797) 1 NM_133797 97820 Mm.451378 NM_133797 ENSMUSG00000025871 4833439L19Rik 4930558H15Rik|C81457|Kiaa1191 RIKEN cDNA 4833439L19 gene 0.108974 0.656051 0.958789 chr10-568 chr10 107628577 107628733 + 25.4 NA intron (NM_027892, intron 3 of 25) intron (NM_027892, intron 3 of 25) 62146 NM_027892 17931 Mm.480604 NM_027892 ENSMUSG00000019907 Ppp1r12a 1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|MGC159084|Mypt1 protein phosphatase 1, regulatory (inhibitor) subunit 12A 0.006410 0.464968 0.497530 chr13-408 chr13 49193590 49193746 + 25.4 NA Intergenic Intergenic -5815 NM_013610 18081 Mm.18503 NM_013610 ENSMUSG00000037966 Ninj1 AU024536 ninjurin 1 0.000000 0.573248 -0.149026 chr5-975 chr5 132383033 132383189 + 25.4 NA intron (NM_177047, intron 2 of 18) intron (NM_177047, intron 2 of 18) 443935 NM_177047 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 0.000000 0.509554 -1.570842 chr2-838 chr2 129149163 129149319 + 25.4 NA TTS (NM_177653) TTS (NM_177653) 78802 NM_177653 228592 Mm.452175 NM_177653 ENSMUSG00000043727 F830045P16Rik Sirpb3 RIKEN cDNA F830045P16 gene 0.000000 0.324841 11.201217 chr8-619 chr8 129857098 129857111 + 25.4 NA promoter-TSS (NM_172762) promoter-TSS (NM_172762) 65 NM_172762 52202 Mm.28199 NM_172762 ENSMUSG00000033931 Rbm34 4930547K05Rik|6330444B11|D8Ertd233e RNA binding motif protein 34 0.076923 0.500000 -10000000000.000000 chr2-703 chr2 30715408 30715564 + 25.4 NA intron (NM_022415, intron 2 of 2) intron (NM_022415, intron 2 of 2) 9820 NM_022415 64292 Mm.28768 NM_022415 ENSMUSG00000050737 Ptges 2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1 prostaglandin E synthase 0.012821 0.496815 -0.837549 chr10-597 chr10 127862006 127862162 + 25.4 NA promoter-TSS (NM_198160) promoter-TSS (NM_198160) -100 NM_001114096 68094 Mm.417338 NM_001114096 ENSMUSG00000025369 Smarcc2 5930405J04Rik SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 0.179487 0.840764 -5.713724 chr5-759 chr5 27379063 27379219 + 25.4 NA promoter-TSS (NM_207282) promoter-TSS (NM_207282) -844 NM_207282 13483 Mm.42078 NM_001136060 ENSMUSG00000061576 Dpp6 B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|MGC113720|Peplb|Rw dipeptidylpeptidase 6 0.032051 0.509554 -0.400395 chr11-842 chr11 98154862 98155018 + 25.4 NA Intergenic CpG -9205 NM_010895 18013 Mm.4814 NM_010895 ENSMUSG00000038255 Neurod2 Ndrf|bHLHa1 neurogenic differentiation 2 0.115385 0.668790 8.077399 chr3-518 chr3 60145362 60145518 + 25.4 NA Intergenic Intergenic -24357 NM_032400 84112 Mm.125110 NM_032400 ENSMUSG00000027762 Sucnr1 Gpr91 succinate receptor 1 0.000000 0.439490 -3.487200 chr18-363 chr18 67677675 67677831 + 25.4 NA intron (NM_194355, intron 1 of 14) intron (NM_194355, intron 1 of 14) 337 NM_194355 68166 Mm.208723 NM_176832 ENSMUSG00000024533 Spire1 6030430B19Rik|AI415299|AU022898|AW550622|Spir-1 spire homolog 1 (Drosophila) 0.000000 0.522293 -3.769584 chr4-831 chr4 140899898 140900054 + 25.4 NA intron (NM_001033150, intron 18 of 19) intron (NM_001033150, intron 18 of 19) -4066 NM_001013780 384071 Mm.295682 NM_001013780 ENSMUSG00000040740 Slc25a34 Gm1369|MGC107701 solute carrier family 25, member 34 0.012821 0.579618 5.342546 chr15-342 chr15 36288757 36288913 + 25.4 NA Intergenic Intergenic -61099 NM_013923 30945 Mm.5181 NM_013923 ENSMUSG00000022280 Rnf19a AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp ring finger protein 19A 0.000000 0.464968 -2.047040 chr14-293 chr14 106679187 106679343 + 25.4 NA Intergenic L1VL4|LINE|L1 1117787 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 0.000000 0.522293 1.439429 chr3-649 chr3 146623886 146624042 + 25.4 NA Intergenic Intergenic -35261 NM_029144 75015 Mm.475299 NM_029144 ENSMUSG00000048652 4930503B20Rik 1700013A07Rik|1700095G21Rik|4930483N21Rik RIKEN cDNA 4930503B20 gene 0.012821 0.503185 -5.136924 chr14-279 chr14 77270940 77271096 + 25.4 NA promoter-TSS (NM_001164503) promoter-TSS (NM_001164503) -3 NM_001164503 219181 Mm.89413 XM_001002157 ENSMUSG00000022016 Akap11 6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629 A kinase (PRKA) anchor protein 11 0.160256 0.764331 -7.796969 chr7-587 chr7 137144589 137144745 + 25.4 NA intron (NM_010096, intron 6 of 15) intron (NM_010096, intron 6 of 15) 8121 NM_001113415 13593 Mm.258708 NM_001113414 ENSMUSG00000010476 Ebf3 3110018A08Rik|KIAA4201|O/E-2|mKIAA4201 early B-cell factor 3 0.019231 0.458599 -5.313152 chr10-501 chr10 75912525 75912681 + 25.4 NA promoter-TSS (NM_019434) promoter-TSS (NM_019434) -83 NM_019434 54387 Mm.30098 NM_019434 ENSMUSG00000001150 Mcm3ap GANP|mKIAA0572 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein 0.083333 0.649682 -4.586630 chr3-593 chr3 117751201 117751357 + 25.4 NA Intergenic Intergenic 109661 NM_001190156 76561 Mm.33824 NM_001190156 ENSMUSG00000028007 Snx7 2510028H01Rik|MGC107328 sorting nexin 7 0.000000 0.433121 3.480632 chr4-860 chr4 150579690 150579846 + 25.4 NA intron (NM_001166021, intron 2 of 22) intron (NM_001166021, intron 2 of 22) 125789 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.025641 0.522293 -5.569172 chr9-551 chr9 14510714 14510870 + 25.4 NA intron (NM_029306, intron 3 of 3) intron (NM_029306, intron 3 of 3) -8277 NM_010242 14345 Mm.63450 NM_010242 ENSMUSG00000049307 Fut4 AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1 fucosyltransferase 4 0.006410 0.503185 -3.872823 chr4-624 chr4 24988811 24988967 + 25.4 NA exon (NM_026742, exon 1 of 3) exon (NM_026742, exon 1 of 3) 177 NM_026742 68493 Mm.204831 NM_026742 ENSMUSG00000028261 Ndufaf4 1110007M04Rik|3000003G13Rik|AW214064 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 0.070513 0.624204 -4.369457 chr6-463 chr6 22277357 22277513 + 25.4 NA intron (NM_138587, intron 5 of 9) intron (NM_138587, intron 5 of 9) 28647 NM_138587 27999 Mm.480606 NM_138587 ENSMUSG00000029672 Fam3c D6Wsu176e|Ilei family with sequence similarity 3, member C 0.012821 0.439490 -3.306242 chr2-933 chr2 181064583 181064739 + 25.4 NA promoter-TSS (NM_010611) promoter-TSS (NM_010611) -28 NM_001003825 16536 Mm.440175 NM_001003824 ENSMUSG00000016346 Kcnq2 HNSPC|KQT2|Nmf134 potassium voltage-gated channel, subfamily Q, member 2 0.173077 0.815287 0.227138 chr9-579 chr9 31060294 31060450 + 25.4 NA Intergenic Intergenic -4299 NM_001080817 382066 Mm.335039 NM_001080817 ENSMUSG00000042496 Prdm10 Gm1112|MGC73898|tristanin PR domain containing 10 0.019231 0.522293 -3.725214 chr13-462 chr13 97558773 97558929 + 25.4 NA intron (NM_001042714, intron 2 of 13) intron (NM_001042714, intron 2 of 13) 13008 NM_001042714 271144 Mm.470057 NM_001042714 ENSMUSG00000047117 Ankdd1b 9330128J19Rik ankyrin repeat and death domain containing 1B 0.012821 0.464968 -2.987327 chr12-682 chr12 98974816 98974972 + 25.4 NA intron (NM_029911, intron 1 of 6) intron (NM_029911, intron 1 of 6) 4096 NM_029911 72258 Mm.196158 NM_029911 ENSMUSG00000033854 Kcnk10 1700024D23Rik|3010005K24Rik|Trek2 potassium channel, subfamily K, member 10 0.006410 0.433121 -7.500017 chr11-863 chr11 102865764 102865920 + 25.4 NA intron (NM_008707, intron 3 of 11) intron (NM_008707, intron 3 of 11) 21191 NM_008707 18107 Mm.10265 NM_008707 ENSMUSG00000020936 Nmt1 AW536594 N-myristoyltransferase 1 0.000000 0.445860 -1.592541 chr5-962 chr5 129250161 129250317 + 25.4 NA intron (NM_001081388, intron 1 of 21) intron (NM_001081388, intron 1 of 21) 17831 NM_001081388 231760 Mm.233996 NM_001081388 ENSMUSG00000029420 Rimbp2 A930033C01Rik|mKIAA0318 RIMS binding protein 2 0.019231 0.573248 -2.205744 chr2-718 chr2 34194964 34195120 + 25.4 NA promoter-TSS (NM_016768) promoter-TSS (NM_016768) -997 NM_016768 18516 Mm.239941 NM_016768 ENSMUSG00000038718 Pbx3 - pre B-cell leukemia transcription factor 3 0.044872 0.528662 -1.584828 chrX-118 chrX 136145186 136145342 + 25.4 NA Intergenic Intergenic 14533 NM_031381 83555 Mm.193025 NM_031381 ENSMUSG00000042386 Tex13 4933403J23Rik|Tex13b testis expressed gene 13 0.019231 0.554140 -2.603060 chr4-784 chr4 125092542 125092698 + 25.4 NA intron (NM_001081097, intron 1 of 15) intron (NM_001081097, intron 1 of 15) 86272 NM_008049 14337 Mm.478511 NM_008049 Ftl2 Ftl|Ftl-2 ferritin light chain 2 0.012821 0.585987 -6.035822 chr7-518 chr7 111077568 111077724 + 25.4 NA Intergenic Intergenic -163790 NR_015573 75479 Mm.460324 NR_015573 1700012D14Rik - RIKEN cDNA 1700012D14 gene 0.006410 0.445860 -3.481083 chr7-538 chr7 116037713 116037869 + 25.4 NA Intergenic Intergenic -56801 NM_172743 233765 Mm.3741 NM_172743 ENSMUSG00000045659 Plekha7 A430081P20Rik|AI414265|MGC90927 pleckstrin homology domain containing, family A member 7 0.012821 0.509554 5.331816 chr8-432 chr8 9500835 9500991 + 25.4 NA intron (NM_173446, intron 1 of 2) intron (NM_173446, intron 1 of 2) 270082 NM_173446 270028 Mm.268163 NM_173446 ENSMUSG00000079157 Fam155a 6430500D16|AW121567|Tmem28 family with sequence similarity 155, member A 0.019231 0.515924 0.818429 chr5-873 chr5 99640805 99640961 + 25.4 NA intron (NR_030692, intron 2 of 3) intron (NR_030692, intron 2 of 3) -147654 NM_145839 320292 Mm.259074 NM_145839 ENSMUSG00000029333 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B 0.006410 0.394904 -9.371265 chr18-295 chr18 16952256 16952412 + 25.4 NA promoter-TSS (NM_007664) promoter-TSS (NM_007664) -267 NM_007664 12558 Mm.257437 NM_007664 ENSMUSG00000024304 Cdh2 CDHN|N-cadherin|Ncad cadherin 2 0.153846 0.808917 -3.761534 chr2-876 chr2 157890799 157890955 + 25.4 NA intron (NM_177657, intron 13 of 13) intron (NM_177657, intron 13 of 13) 29786 NM_001131021 228846 Mm.187574 NM_001131021 ENSMUSG00000037813 D630003M21Rik - RIKEN cDNA D630003M21 gene 0.019231 0.611465 -2.600780 chr7-406 chr7 18787751 18787907 + 25.4 NA 5' UTR (NM_009046, exon 1 of 11) 5' UTR (NM_009046, exon 1 of 11) 131 NM_009046 19698 Mm.1741 NM_009046 ENSMUSG00000002983 Relb MGC143683|MGC143684 avian reticuloendotheliosis viral (v-rel) oncogene related B 0.128205 0.745223 -5.120075 chr9-751 chr9 119425839 119425995 + 25.4 NA intron (NM_021544, intron 1 of 27) intron (NM_021544, intron 1 of 27) 1797 NM_021544 20271 Mm.103584 NM_021544 ENSMUSG00000032511 Scn5a Nav1.5|Nav1.5c|SkM1|mH1 sodium channel, voltage-gated, type V, alpha 0.000000 0.503185 -5.507034 chr9-632 chr9 57387338 57387494 + 25.4 NA promoter-TSS (NM_027895) promoter-TSS (NM_027895) -172 NM_027895 71742 Mm.155877 XM_620754 ENSMUSG00000032308 Ulk3 1200015E14Rik unc-51-like kinase 3 (C. elegans) 0.032051 0.585987 -4.402392 chr5-770 chr5 32244664 32244820 + 25.4 NA intron (NM_144541, intron 7 of 11) intron (NM_144541, intron 7 of 11) -168310 NM_008037 14284 Mm.24684 NM_008037 ENSMUSG00000029135 Fosl2 Fra-2 fos-like antigen 2 0.000000 0.515924 -3.960161 chr13-393 chr13 41175743 41175899 + 25.4 NA Intergenic L1M2|LINE|L1 -54859 NM_008104 107889 Mm.1399 NM_008104 ENSMUSG00000021362 Gcm2 Gcm-rs1|Gcm1|Gcm1-rs2|MGC130289|MGC130290 glial cells missing homolog 2 (Drosophila) 0.025641 0.407643 -5.008839 chr6-653 chr6 134481180 134481336 + 25.4 NA intron (NM_008514, intron 3 of 22) intron (NM_008514, intron 3 of 22) 51348 NM_008514 16974 Mm.481492 NM_008514 ENSMUSG00000030201 Lrp6 C030016K15Rik|Cd low density lipoprotein receptor-related protein 6 0.006410 0.496815 -5.635011 chr1-820 chr1 16157756 16157912 + 25.4 NA Intergenic Intergenic 66739 NM_133832 98711 Mm.274376 NM_133832 ENSMUSG00000025921 Rdh10 3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp retinol dehydrogenase 10 (all-trans) 0.025641 0.535032 -5.768445 chr5-922 chr5 115750465 115750621 + 25.4 NA Intergenic U4|snRNA|snRNA -5060 NM_133760 75387 Mm.332616 XM_485674 ENSMUSG00000029524 Sirt4 4930596O17Rik sirtuin 4 (silent mating type information regulation 2 homolog) 4 (S. cerevisiae) 0.064103 0.433121 -6.535979 chr2-802 chr2 93979730 93979886 + 25.4 NA Intergenic Intergenic -21060 NM_019657 56348 Mm.480343 NM_019657 ENSMUSG00000027195 Hsd17b12 2610510O05Rik|AI172963|KIK-I|Kik1 hydroxysteroid (17-beta) dehydrogenase 12 0.064103 0.566879 -1.337728 chr7-414 chr7 25535637 25535793 + 25.4 NA Intergenic B4A|SINE|B4 -10425 NM_028775 74134 Mm.275188 NM_028775 ENSMUSG00000040703 Cyp2s1 1200011C15Rik|AU041727|C79779 cytochrome P450, family 2, subfamily s, polypeptide 1 0.019231 0.528662 -1.698982 chr12-644 chr12 81625779 81625935 + 25.4 NA intron (NM_001177503, intron 4 of 12) intron (NM_001177503, intron 4 of 12) 14409 NM_001177503 217682 Mm.154541 XM_126991 ENSMUSG00000066438 3830431G21Rik - RIKEN cDNA 3830431G21 gene 0.006410 0.535032 -2.680189 chr4-603 chr4 3017861 3018017 + 25.4 NA Intergenic GSAT_MM|Satellite|Satellite -81290 NM_001167534 100312470 Mm.480297 NM_001167534 Vmn1r2 Gm11776|OTTMUSG00000004179 vomeronasal 1 receptor 2 0.025641 0.369427 -3.259500 chr7-526 chr7 112206324 112206480 + 25.4 NA Intergenic Intergenic -12484 NM_020606 57342 Mm.143763 NM_020606 ENSMUSG00000030770 Parva 2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin parvin, alpha 0.012821 0.382166 -3.997906 chr7-456 chr7 65348637 65348793 + 25.4 NA Intergenic Intergenic -98521 NM_009386 21872 Mm.4342 NM_001163574 ENSMUSG00000030516 Tjp1 ZO1 tight junction protein 1 0.012821 0.592357 3.336937 chr11-851 chr11 99974105 99974261 + 25.4 NA Intergenic Intergenic -12174 NM_008471 16669 Mm.439699 NM_008471 ENSMUSG00000020911 Krt19 AI663979|EndoC|K19|Krt-1.19|Krt1-19|MGC25344 keratin 19 0.012821 0.490446 -7.500114 chr7-545 chr7 118286166 118286322 + 25.4 NA Intergenic Intergenic -3120 NM_001033380 319622 Mm.323386 NM_001033380 Itpripl2 C130081G24|E030018N11Rik inositol 1,4,5-triphosphate receptor interacting protein-like 2 0.000000 0.515924 -1.472442 chr9-629 chr9 57082702 57082858 + 25.4 NA Intergenic L2|LINE|L2 -22044 NM_028820 74211 Mm.428905 NM_028820 ENSMUSG00000032300 1700017B05Rik AA682102|D9Ertd278e|MGC144191 RIKEN cDNA 1700017B05 gene 0.019231 0.369427 -9.721784 chr4-611 chr4 8220860 8221016 + 25.4 NA Intergenic Intergenic -54750 NM_007592 12319 Mm.119320 NM_007592 ENSMUSG00000041261 Car8 AW546993|Ca8|Cals|Cals1|Carp|wdl carbonic anhydrase 8 0.000000 0.369427 1.562723 chr1-988 chr1 94095580 94095736 + 25.4 NA Intergenic Intergenic -116859 NM_207225 208727 Mm.318567 NM_207225 ENSMUSG00000026313 Hdac4 4932408F19Rik|AI047285 histone deacetylase 4 0.012821 0.535032 -8.183310 chr17-504 chr17 45574541 45574697 + 25.4 NA promoter-TSS (NM_026768) promoter-TSS (NM_026768) 35 NM_026768 68565 Mm.287443 NM_026768 ENSMUSG00000023967 Mrps18a 1110004O20Rik|C79712|MGC66832 mitochondrial ribosomal protein S18A 0.076923 0.687898 -3.600967 chr5-948 chr5 122419415 122419571 + 25.4 NA intron (NM_013636, intron 1 of 6) intron (NM_013636, intron 1 of 6) 598 NM_013636 19047 Mm.474554 NM_013636 ENSMUSG00000004455 Ppp1cc PP1|dis2m1 protein phosphatase 1, catalytic subunit, gamma isoform 0.051282 0.592357 -6.110323 chr11-690 chr11 29072089 29072245 + 25.4 NA promoter-TSS (NM_134034) promoter-TSS (NM_134034) -739 NM_134034 104570 Mm.276386 XM_001479721 ENSMUSG00000020463 Smek2 AW011752|AW557776|KIAA1387|mKIAA1387 SMEK homolog 2, suppressor of mek1 (Dictyostelium) 0.089744 0.579618 -5.378928 chr17-486 chr17 38685110 38685266 + 25.4 NA promoter-TSS (NM_001177582) promoter-TSS (NM_001177582) -98 NM_001177582 100126779 Mm.471589 NM_001177582 Esp23 - exocrine gland-secreting peptide 23 0.000000 0.375796 -5.317064 chr19-267 chr19 58670054 58670210 + 25.4 NA Intergenic MTD|LTR|MaLR -53482 NM_026925 69060 Mm.20407 NM_026925 ENSMUSG00000046008 Pnlip 1810007A24Rik|MGC74173|PTL pancreatic lipase 0.019231 0.452229 -2.099897 chr18-332 chr18 46541351 46541507 + 25.4 NA Intergenic Intergenic 49718 NM_028086 72076 Mm.82766 XM_128948 ENSMUSG00000046487 Mospd4 2010013H21Rik motile sperm domain containing 4 0.012821 0.515924 -3.424119 chr4-708 chr4 86919683 86919839 + 25.4 NA Intergenic Intergenic -217990 NM_172426 76376 Mm.127296 NM_001110240 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 0.012821 0.452229 -1.078768 chr1-1158 chr1 195130995 195131151 + 25.4 NA Intergenic Intergenic -60067 NM_144817 215303 Mm.40329 NM_144817 ENSMUSG00000016179 Camk1g CLICK-III|CaMKIgamma|MGC30513 calcium/calmodulin-dependent protein kinase I gamma 0.012821 0.407643 1.172648 chr7-500 chr7 100580751 100580907 + 25.4 NA promoter-TSS (NM_178764) promoter-TSS (NM_178764) 41 NM_178764 319604 Mm.260362 NM_178764 ENSMUSG00000029461 Fam168a 2610030B18Rik|B930006L02Rik|mKIAA0280 family with sequence similarity 168, member A 0.089744 0.649682 -9.365956 chr12-705 chr12 106786891 106787047 + 25.4 NA Intergenic Intergenic 330405 NR_015512 71033 Mm.159404 NR_015512 4933406K04Rik 4930426M03Rik|4930485I22Rik|4933427G14Rik RIKEN cDNA 4933406K04 gene 0.025641 0.496815 -3.025107 chr1-823 chr1 21066723 21066879 + 25.4 NA Intergenic MLT1F|LTR|MaLR -2425 NM_177409 170829 Mm.273241 NM_133252 ENSMUSG00000041779 Tram2 C330003D03Rik|MGC25725 translocating chain-associating membrane protein 2 0.000000 0.464968 -11.665872 chr5-862 chr5 93683058 93683214 + 25.4 NA TTS (NM_177230) TTS (NM_177230) 4882 NM_175096 52331 Mm.21965 NM_175096 ENSMUSG00000047963 Stbd1 D530019K15Rik|D5Ertd593e|MGC148231|MGC148232 starch binding domain 1 0.006410 0.350318 1.545274 chr17-568 chr17 94591860 94592016 + 25.4 NA Intergenic Intergenic 462063 NM_176917 76781 Mm.458562 NM_176917 ENSMUSG00000055660 Mettl4 2410198H06Rik|A730091E08Rik|AV296509|HsT661 methyltransferase like 4 0.006410 0.458599 -6.312778 chr12-541 chr12 27822066 27822222 + 25.4 NA Intergenic Intergenic 106842 NM_009234 20666 Mm.466344 NM_009234 ENSMUSG00000063632 Sox11 1110038H03Rik|6230403H02Rik|AI836553|end1 SRY-box containing gene 11 0.000000 0.464968 -6.007084 chr3-486 chr3 26333341 26333497 + 25.4 NA intron (NM_138666, intron 2 of 7) intron (NM_138666, intron 2 of 7) 10961 NM_001163387 192167 Mm.478636 NM_001163387 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|MGC107366|NL1|mKIAA1070 neuroligin 1 0.012821 0.471338 5.370134 chr3-654 chr3 153674590 153674746 + 25.4 NA Intergenic Intergenic -12149 NM_011372 20447 Mm.440929 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 0.025641 0.426752 0.278738 chr3-609 chr3 125876902 125877058 + 25.4 NA intron (NM_011674, intron 2 of 5) intron (NM_011674, intron 2 of 5) 53592 NM_011674 22239 Mm.306021 NM_011674 ENSMUSG00000032854 Ugt8a AI850488|AW455908|Cgt|Ugt8|mCerGT UDP galactosyltransferase 8A 0.000000 0.363057 -3.488118 chr8-511 chr8 51028257 51028413 + 25.4 NA Intergenic B3|SINE|B2 -854828 NM_011857 23965 Mm.42191 NM_001145937 ENSMUSG00000031561 Odz3 2610100B16Rik|Odz1|Ten-m3|mKIAA1455 odd Oz/ten-m homolog 3 (Drosophila) 0.019231 0.515924 -4.576381 chr4-828 chr4 138910041 138910197 + 25.4 NA intron (NM_175438, intron 7 of 14) intron (NM_175438, intron 7 of 14) 15150 NM_175438 212647 Mm.273571 NM_175438 ENSMUSG00000028737 Aldh4a1 A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1 aldehyde dehydrogenase 4 family, member A1 0.044872 0.598726 -2.832605 chr16-338 chr16 33433568 33433724 + 25.4 NA Intergenic Intergenic -4429 NM_134251 171286 Mm.35253 NM_001083902 ENSMUSG00000035506 Slc12a8 CCC9|E330020C02Rik solute carrier family 12 (potassium/chloride transporters), member 8 0.025641 0.605096 -7.799607 chr2-676 chr2 25045763 25045919 + 25.4 NA intron (NM_146116, intron 3 of 3) intron (NM_146116, intron 3 of 3) 870 NM_146116 227613 Mm.479538 NM_146116 ENSMUSG00000036752 Tubb2c 4930542G03Rik|MGC101937|MGC28623|MGC6713|Tubb2c1 tubulin, beta 2C 0.012821 0.509554 -3.629596 chr4-650 chr4 46885034 46885190 + 25.4 NA intron (NM_001081141, intron 2 of 18) intron (NM_001081141, intron 2 of 18) 127702 NM_001081141 242425 Mm.101909 NM_001081141 ENSMUSG00000039809 Gabbr2 GABABR2|Gb2|Gm425|Gpr51 gamma-aminobutyric acid (GABA) B receptor, 2 0.038462 0.585987 -3.784621 chr8-620 chr8 130195557 130195713 + 25.4 NA intron (NM_001013580, intron 2 of 13) intron (NM_001013580, intron 2 of 13) 9894 NM_001013580 93742 Mm.299254 NM_001013580 ENSMUSG00000025812 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) 0.006410 0.407643 -5.313152 chr2-892 chr2 165833807 165833963 + 25.4 NA intron (NM_028072, intron 1 of 20) intron (NM_028072, intron 1 of 20) 12976 NM_028072 72043 Mm.1011 NM_028072 ENSMUSG00000006800 Sulf2 2010004N24Rik|AU020235|mKIAA1247 sulfatase 2 0.057692 0.605096 -5.124323 chr13-367 chr13 24156025 24156181 + 25.4 NA intron (NM_026825, intron 8 of 37) intron (NM_026825, intron 8 of 37) 132152 NM_026825 68732 Mm.211047 NM_026825 ENSMUSG00000021338 Lrrc16a 1110037D04Rik|AI425970|CARMIL|D130057M20|Lrrc16 leucine rich repeat containing 16A 0.000000 0.439490 -4.351694 chr19-264 chr19 57979591 57979747 + 25.4 NA intron (NM_181415, intron 26 of 28) intron (NM_181415, intron 26 of 28) 315386 NM_181415 226255 Mm.245340 NM_181415 ENSMUSG00000054843 Atrnl1 AI504415|AW555641|Alp|Atrnl|Atrnlp attractin like 1 0.012821 0.382166 -5.442482 chr8-585 chr8 124473224 124473380 + 25.4 NA Intergenic Intergenic -3225 NM_026160 67443 Mm.28357 NM_026160 ENSMUSG00000031812 Map1lc3b 1010001C15Rik|LC3b|MGC118046|Map1lc3 microtubule-associated protein 1 light chain 3 beta 0.012821 0.439490 -5.574519 chr10-444 chr10 13405938 13406094 + 25.4 NA intron (NM_025446, intron 3 of 5) intron (NM_025446, intron 3 of 5) 153012 NM_025446 66253 Mm.45755 NM_025446 ENSMUSG00000019806 Aig1 1500031O19Rik|AV064870|AW413422|CGI-103 androgen-induced 1 0.006410 0.490446 -2.847774 chr10-548 chr10 92700300 92700456 + 25.4 NA intron (NM_013508, intron 2 of 4) intron (NM_013508, intron 2 of 4) 40580 NM_013508 13713 Mm.4454 NM_013508 ENSMUSG00000008398 Elk3 D430049E23Rik|Erp|Etrp|Net|Sap-2 ELK3, member of ETS oncogene family 0.025641 0.566879 -3.335130 chr11-724 chr11 57779525 57779681 + 25.4 NA Intergenic Intergenic -45655 NM_028451 73158 Mm.248843 XM_126172 ENSMUSG00000037331 Larp1 1810024J12Rik|3110040D16Rik|Larp|mKIAA0731 La ribonucleoprotein domain family, member 1 0.038462 0.522293 -7.215289 chr14-237 chr14 31342598 31342754 + 25.4 NA intron (NM_001081221, intron 1 of 20) intron (NM_001081221, intron 1 of 20) 147 NM_001081221 319955 Mm.318310 NM_001081221 ENSMUSG00000054051 Ercc6 4732403I04|C130058G22Rik|CSB excision repair cross-complementing rodent repair deficiency, complementation group 6 0.128205 0.713376 -8.070273 chr7-597 chr7 141267915 141268071 + 25.4 NA Intergenic Intergenic -2548 NM_172116 213350 Mm.290953 NM_172116 ENSMUSG00000051007 Pddc1 BC023835|D230016J19Rik|MGC38368 Parkinson disease 7 domain containing 1 0.025641 0.560510 1.347800 chr5-861 chr5 93678674 93678830 + 25.4 NA intron (NM_175096, intron 1 of 1) intron (NM_175096, intron 1 of 1) 498 NM_175096 52331 Mm.21965 NM_175096 ENSMUSG00000047963 Stbd1 D530019K15Rik|D5Ertd593e|MGC148231|MGC148232 starch binding domain 1 0.070513 0.694268 -2.039449 chr8-503 chr8 47711323 47711479 + 25.4 NA Intergenic Intergenic -1575 NM_007450 11739 Mm.16228 NM_007450 ENSMUSG00000031633 Slc25a4 AU019225|Ant1 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 0.019231 0.484076 -2.501328 chr11-707 chr11 50201675 50201831 + 25.4 NA promoter-TSS (NR_030529) promoter-TSS (NR_030529) -451 NR_030529 100049547 NR_030529 Mir804 Mirn804|mmu-mir-804 microRNA 804 0.012821 0.528662 0.828838 chr12-725 chr12 111249918 111250074 + 25.4 NA Intergenic Intergenic 38750 NM_011973 26448 Mm.140948 NM_011973 ENSMUSG00000056458 Stk30 MGC107277|MGC46883|MOK|RAGE1|Rage serine/threonine kinase 30 0.012821 0.573248 -3.955330 chr5-913 chr5 113685557 113685713 + 25.4 NA Intergenic Intergenic -45114 NM_177292 320916 Mm.102783 NM_177292 ENSMUSG00000063430 Wscd2 4933413A10Rik|C530024P05Rik|Gm450 WSC domain containing 2 0.019231 0.414013 4.037371 chr4-850 chr4 148428812 148428968 + 25.4 NA Intergenic Intergenic -1547 NM_023051 65945 Mm.38993 NM_023051 ENSMUSG00000039953 Clstn1 1810034E21Rik|Cst-1|Cstn1 calsyntenin 1 0.019231 0.547771 -8.040756 chr5-1031 chr5 147856447 147856603 + 25.4 NA intron (NM_028291, intron 18 of 18) intron (NM_028291, intron 18 of 18) 115597 NM_028291 72587 Mm.465343 NM_028291 ENSMUSG00000029647 Pan3 2700050F09Rik|A430027N15Rik|AU014670|MGC102350|MGC99847 PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) 0.012821 0.484076 -3.180853 chr9-671 chr9 69908578 69908734 + 25.4 NA intron (NM_029784, intron 4 of 8) intron (NM_029784, intron 4 of 8) 32065 NM_029784 76886 Mm.44355 NM_029784 ENSMUSG00000032224 Fam81a 6430514L14Rik family with sequence similarity 81, member A 0.012821 0.496815 -3.741996 chr4-669 chr4 61694725 61694881 + 25.4 NA 5' UTR (NM_009554, exon 1 of 4) 5' UTR (NM_009554, exon 1 of 4) 104 NM_009554 22696 Mm.5011 NM_009554 ENSMUSG00000028389 Zfp37 AV042165|Tzn|Zfp-37 zinc finger protein 37 0.089744 0.662420 -11.209120 chr6-662 chr6 145207409 145207565 + 25.4 NA promoter-TSS (NM_021284) promoter-TSS (NM_021284) -97 NM_021284 16653 Mm.383182 NM_021284 ENSMUSG00000030265 Kras AI929937|K-ras|Ki-ras|Kras-2|Kras2|MGC7141|p21B|ras v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog 0.153846 0.789809 -5.465322 chr6-554 chr6 84596116 84596272 + 25.4 NA intron (NM_177077, intron 20 of 21) intron (NM_177077, intron 20 of 21) -36628 NM_001177713 232174 Mm.255246 NM_001177713 ENSMUSG00000063415 Cyp26b1 CP26|P450RAI-2 cytochrome P450, family 26, subfamily b, polypeptide 1 0.000000 0.452229 -1.906015 chr4-859 chr4 150423715 150423871 + 25.4 NA intron (NM_001166021, intron 3 of 22) intron (NM_001166021, intron 3 of 22) 281764 NM_001166021 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 calmodulin binding transcription activator 1 0.000000 0.535032 2.643679 chr13-394 chr13 41325037 41325193 + 25.4 NA intron (NM_017464, intron 6 of 6) intron (NM_017464, intron 6 of 6) 44860 NM_017464 18003 Mm.288980 NM_001111324 ENSMUSG00000021365 Nedd9 Cas-L|CasL|E230025G09Rik|HEF1 neural precursor cell expressed, developmentally down-regulated gene 9 0.006410 0.471338 2.707589 chr13-425 chr13 56766783 56766939 + 25.4 NA Intergenic Intergenic 53572 NM_001164042 17129 Mm.272920 NM_001164041 ENSMUSG00000021540 Smad5 1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP MAD homolog 5 (Drosophila) 0.032051 0.452229 1.775462 chr10-439 chr10 11704103 11704259 + 25.4 NA Intergenic Intergenic 670547 NM_010146 13853 Mm.89946 NM_010146 ENSMUSG00000055493 Epm2a - epilepsy, progressive myoclonic epilepsy, type 2 gene alpha 0.006410 0.369427 -3.510706 chr16-308 chr16 15801622 15801778 + 25.4 NA exon (NM_007679, exon 1 of 1) exon (NM_007679, exon 1 of 1) 837 NM_007679 12609 Mm.347407 NM_007679 Cebpd - CCAAT/enhancer binding protein (C/EBP), delta 0.102564 0.675159 1.494276 chr13-375 chr13 31336449 31336605 + 25.4 NA Intergenic Intergenic -229107 NM_008239 15220 Mm.44235 NM_008239 ENSMUSG00000038415 Foxq1 HFH-1|Hfh1|Hfh1l|sa forkhead box Q1 0.025641 0.477707 -3.105729 chr1-1021 chr1 128960558 128960714 + 25.4 NA Intergenic Intergenic -71895 NM_145128 107895 Mm.472488 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 0.006410 0.420382 -2.076558 chr5-991 chr5 137524165 137524321 + 25.4 NA promoter-TSS (NM_027356) promoter-TSS (NM_027356) -213 NM_027356 70240 Mm.124666 NM_027356 ENSMUSG00000051502 Ufsp1 2700038N03Rik|D5Ertd655e|MGC107633 UFM1-specific peptidase 1 0.057692 0.624204 -3.695747 chr8-452 chr8 13241762 13241918 + 25.4 NA intron (NM_172750, intron 6 of 6) intron (NM_172750, intron 6 of 6) 12299 NM_172750 234072 Mm.132785 NM_172750 ENSMUSG00000031448 Adprhl1 Arh2|D330008N11Rik ADP-ribosylhydrolase like 1 0.006410 0.535032 -1.882675 chr8-530 chr8 73705855 73706011 + 25.4 NA promoter-TSS (NM_008841) promoter-TSS (NM_008841) 83 NR_029440 72093 Mm.271208 NR_029440 2010320M18Rik - RIKEN cDNA 2010320M18 gene 0.102564 0.630573 -3.789036 chr8-487 chr8 37402168 37402324 + 25.4 NA Intergenic Intergenic -107170 NM_027998 71908 Mm.37817 NM_027998 ENSMUSG00000055976 Cldn23 2310014B08Rik claudin 23 0.000000 0.541401 3.106291 chr3-496 chr3 32317517 32317673 + 25.4 NA intron (NM_028231, intron 2 of 5) intron (NM_028231, intron 2 of 5) 224015 NM_028231 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik|MGC57945 potassium large conductance calcium-activated channel, subfamily M, beta member 2 0.006410 0.439490 5.492814 chr4-869 chr4 152152001 152152157 + 25.4 NA Intergenic Intergenic 174551 NM_001099299 230959 Mm.318874 XM_001475023 ENSMUSG00000039546 Ajap1 Gm573 adherens junction associated protein 1 0.019231 0.490446 -2.048970 chr7-612 chr7 144869356 144869512 + 25.4 NA Intergenic Intergenic -120119 NM_007631 12443 Mm.273049 NM_007631 ENSMUSG00000070348 Ccnd1 AI327039|Cyl-1|PRAD1|bcl-1|cD1 cyclin D1 0.000000 0.528662 -5.091317 chr10-566 chr10 104872324 104872480 + 25.4 NA intron (NM_177368, intron 1 of 11) intron (NM_177368, intron 1 of 11) 106187 NM_177368 278279 Mm.25225 NM_177368 ENSMUSG00000036019 Tmtc2 8430438D04Rik|D330034A10Rik|MGC116613 transmembrane and tetratricopeptide repeat containing 2 0.000000 0.452229 -5.336136 chr1-985 chr1 93147204 93147360 + 25.4 NA intron (NM_016717, intron 8 of 11) intron (NM_016717, intron 8 of 11) -5198 NM_001033292 227357 Mm.318167 NM_001033292 ENSMUSG00000049515 Espnl Gm556 espin-like 0.006410 0.560510 -1.865913 chr7-479 chr7 81918811 81918967 + 25.4 NA Intergenic Intergenic -53077 NM_007562 12173 Mm.243802 NM_007562 ENSMUSG00000025105 Bnc1 AI047752|AW546376|Bnc basonuclin 1 0.000000 0.471338 -2.490685 chr4-820 chr4 137163629 137163785 + 25.4 NA intron (NM_199307, intron 1 of 19) intron (NM_199307, intron 1 of 19) 29395 NM_199307 230857 Mm.439998 NM_199307 ENSMUSG00000057530 Ece1 AW322500|ECE-1a|ECE-1b|ECE-1d endothelin converting enzyme 1 0.006410 0.464968 -5.598668 chr9-691 chr9 82772120 82772276 + 25.4 NA promoter-TSS (NM_001081216) promoter-TSS (NM_001081216) 9 NM_001081216 83946 Mm.221688 NM_001081216 ENSMUSG00000032253 Phip 2810004D21Rik|4632404O06Rik|Ndrp|Wdr11 pleckstrin homology domain interacting protein 0.134615 0.738854 -4.112596 chr5-969 chr5 130318069 130318225 + 25.4 NA intron (NM_007761, intron 1 of 5) intron (NM_007761, intron 1 of 5) 4139 NM_007761 12909 Mm.18072 NM_007761 ENSMUSG00000025532 Crcp AL022669 calcitonin gene-related peptide-receptor component protein 0.019231 0.414013 -0.120076 chr5-777 chr5 34504811 34504967 + 25.4 NA promoter-TSS (NM_010753) promoter-TSS (NM_010753) -322 NM_010753 17122 Mm.391777 NM_010753 ENSMUSG00000037235 Mxd4 2810410A03Rik|Mad4|bHLHc12 Max dimerization protein 4 0.076923 0.605096 -1.651486 chr14-240 chr14 32232294 32232450 + 25.4 NA intron (NM_016700, intron 3 of 11) intron (NM_016700, intron 3 of 11) 43878 NM_016700 26419 Mm.21495 NM_016700 ENSMUSG00000021936 Mapk8 AI849689|JNK|JNK1|Prkm8|SAPK1 mitogen-activated protein kinase 8 0.006410 0.433121 -1.165524 chr7-480 chr7 82742276 82742432 + 25.4 NA Intergenic CpG -1163 NM_175366 108797 Mm.306789 XM_620516 Mex3b 4931439A04Rik|M-04814|Rkhd3|mKIAA2009 mex3 homolog B (C. elegans) 0.108974 0.726115 -3.906913 chr1-834 chr1 34064620 34064776 + 25.4 NA intron (NM_134448, intron 5 of 97) intron (NM_134448, intron 5 of 97) 108328 NM_134448 13518 Mm.478284 NM_133833 ENSMUSG00000026131 Dst 2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339 dystonin 0.006410 0.496815 -3.798459 chr13-385 chr13 37570235 37570391 + 25.4 NA Intergenic Intergenic 217503 NM_010745 17084 Mm.2639 NM_010745 ENSMUSG00000021423 Ly86 MD-1|MD1 lymphocyte antigen 86 0.019231 0.535032 -1.757092 chr11-753 chr11 69212334 69212490 + 25.4 NA promoter-TSS (NM_001045525) promoter-TSS (NM_001045525) 427 NM_030083 78304 Mm.45683 NM_030083 ENSMUSG00000059278 Lsmd1 1500034E06Rik LSM domain containing 1 0.057692 0.573248 -0.005099 chr3-612 chr3 126819298 126819454 + 25.4 NA intron (NM_001025438, intron 14 of 18) intron (NM_001025438, intron 14 of 18) 116032 NM_001034168 109676 Mm.461850 NM_001034168 ENSMUSG00000032826 Ank2 AI835472|AW491075|Ank-2 ankyrin 2, brain 0.025641 0.503185 3.325008 chr2-865 chr2 153284745 153284901 + 25.4 NA Intergenic Intergenic 39349 NM_133850 99311 Mm.294478 NM_133850 ENSMUSG00000056941 Commd7 2310010I22Rik|AW060956|mU3 COMM domain containing 7 0.019231 0.624204 3.909233 chr12-570 chr12 44402270 44402426 + 25.4 NA Intergenic Intergenic 678006 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ (Hsp40) homolog, subfamily B, member 9 0.006410 0.305732 0.934684 chr19-187 chr19 4046138 4046294 + 25.4 NA Intergenic L1M5|LINE|L1 -3995 NM_181796 14869 Mm.441542 NM_181796 ENSMUSG00000038155 Gstp2 GSTpiA|Gst-3|Gst3 glutathione S-transferase, pi 2 0.038462 0.496815 -2.335121 chr2-896 chr2 166891374 166891530 + 25.4 NA Intergenic Intergenic -11448 NM_008420 16500 Mm.387390 NM_008420 ENSMUSG00000050556 Kcnb1 Kcr1-1|Kv2.1|Shab potassium voltage gated channel, Shab-related subfamily, member 1 0.006410 0.515924 -4.015348 chrX-89 chrX 40914603 40914759 + 25.4 NA Intergenic Intergenic 120107 NM_001190718 245404 Mm.55685 NM_001190718 ENSMUSG00000045284 Dcaf12l1 9330180J20|A230038L21Rik|Decaf12l1|Wdr40b DDB1 and CUL4 associated factor 12-like 1 0.000000 0.433121 3.335101 chr5-857 chr5 93197112 93197268 + 25.4 NA Intergenic Intergenic -15947 NM_019490 56041 Mm.15868 NM_019490 ENSMUSG00000029407 Uso1 115kDa|TAP|Vdp USO1 homolog, vesicle docking protein (yeast) 0.012821 0.363057 -3.690400 chr8-572 chr8 122281004 122281160 + 25.4 NA exon (NM_019966, exon 1 of 5) exon (NM_019966, exon 1 of 5) 214 NM_019966 56690 Mm.423037 NM_019966 ENSMUSG00000074064 Mlycd AI324784|Mcd malonyl-CoA decarboxylase 0.179487 0.770701 -4.586631 chr2-695 chr2 29609729 29609885 + 25.4 NA promoter-TSS (NM_145520) promoter-TSS (NM_145520) -127 NM_145520 227682 Mm.245739 NM_145520 ENSMUSG00000039826 Trub2 G430055L02Rik TruB pseudouridine (psi) synthase homolog 2 (E. coli) 0.032051 0.407643 -4.880674 chr8-556 chr8 97991512 97991668 + 25.4 NA exon (NM_010631, exon 16 of 20) exon (NM_010631, exon 16 of 20) 10881 NM_001145832 16582 Mm.378951 NM_001145831 ENSMUSG00000031788 Kifc3 AI325457|BB123200 kinesin family member C3 0.051282 0.611465 -3.740066 chr12-633 chr12 79929925 79930081 + 25.4 NA Intergenic MIR_Mars|SINE|MIR -3886 NM_178745 268567 Mm.341747 NM_001170401 ENSMUSG00000046157 Tmem229b 6330442E10Rik|9830138K24|AU019070 transmembrane protein 229B 0.006410 0.458599 -1.668051 chr8-459 chr8 14987856 14988012 + 25.4 NA intron (NM_172751, intron 26 of 28) intron (NM_172751, intron 26 of 28) -23067 NM_029116 74901 Mm.46675 XM_001474596 ENSMUSG00000055675 Kbtbd11 2900016B01Rik|4930465M17Rik|mKIAA0711 kelch repeat and BTB (POZ) domain containing 11 0.019231 0.573248 -2.305602 chr5-998 chr5 139506185 139506341 + 25.4 NA promoter-TSS (NM_001163316) promoter-TSS (NM_001163316) 298 NM_026269 67604 Mm.270137 NM_001163316 ENSMUSG00000025858 Get4 1110007L15Rik|AW412535|Cee golgi to ER traffic protein 4 homolog (S. cerevisiae) 0.108974 0.687898 0.706855 chr5-747 chr5 15446544 15446700 + 25.4 NA 5' UTR (NM_001110843, exon 1 of 39) 5' UTR (NM_001110843, exon 1 of 39) 108 NM_001110846 12293 Mm.159842 NM_001110843 ENSMUSG00000040118 Cacna2d1 Cacna2|Cchl2a|MGC141430 calcium channel, voltage-dependent, alpha2/delta subunit 1 0.153846 0.789809 -8.676926