Description

A list of instances of identified regulatory motifs.
A motif catalog was built from TRANSFAC, Jaspar, and Protein Binding Microarrays using a method similar to that described in the reference below, with extensions for position frequency matricies. Motif instances were identified genome-wide using a FDR of 60%.

Credits

Data provided by Pouya Kheradpour at mit.edu

References

Kheradpour, P., Stark, A., Roy, S. & Kellis, M. Reliable prediction of regulator targets using 12 Drosophila genomes. Genome Res 17, 1919-1931, doi:gr.7090407 [pii] 10.1101/gr.7090407 (2007).