Ce11 26-way conservation alignment

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on ce11
% of ce11
matched
(chainLink table)
01ce11Caenorhabditis
elegans
C. elegans Aug. 2014 (WBcel245/ce11) Washington University School of Medicine GSC and Sanger Institute WBcel245 2015-06-10 2015-06-10 N/AN/A
02caeSp51Caenorhabditis
sp5
ju800
C. sp. 5 ju800 Jan. 2012 (WS230/Caenorhabditis_sp_5-JU800-1.0/caeSp51) University of Edinburgh Caenorhabditis sp. 5 genome project 2015-07-08 2015-07-08 2015-07-0940.332%
03caePb3Caenorhabditis
brenneri
C. brenneri Nov. 2010 (C. brenneri 6.0.1b/caePb3) The Caenorhabditis brenneri Sequencing and Analysis Consortium (GCA_000143925.2) 2011-06-08 2011-06-08 2015-07-0140.638%
04caeRem4Caenorhabditis
remanei
C. remanei Jul. 2007 (WS220/caeRem4) Washington University School of Medicine GSC C. remanei 15.0.1 2011-05-25 2011-05-25 2015-07-0241.715%
05cb4Caenorhabditis
briggsae
C. briggsae Apr. 2011 (WS225/cb4) Washington University School of Medicine GSC and Sanger Institute cb4 2011-05-24 2011-05-24 2015-07-0139.384%
06caeSp111Caenorhabditis
tropicalis
C. tropicalis Nov. 2010 (WUSTL 3.0.1/caeSp111) Washington University School of Medicine GSC Caenorhabditis sp. 9 JU1422 MAF-2010 3.0.1 (GCA_000186765.1) 2011-05-31 2011-05-31 2015-07-0737.870%
07caeJap4Caenorhabditis
japonica
C. japonica Aug. 2010 (WUSTL 7.0.1/caeJap4) Washington University School of Medicine GSC C. japonica 7.0.1 (GCA_000147155.1) 2011-06-03 2011-06-03 2015-06-2527.709%
08caeAng2Caenorhabditis
angaria
C. angaria Mar. 2012 (WS245/caeAng2) Division of Biology, California Institute of Technology 2015-06-30 2015-06-30 2015-06-3017.682%
09priPac3Pristionchus
pacificus
P. pacificus Aug. 2014 (P_pacificus-v2/priPac3) Max Planck Institute for Developmental Biology P. pacificus genome project 2015-07-01 2015-07-01 2015-07-016.308%
10priExs1Pristionchus
exspectatus
P. exspectatus Mar. 2014 (WS243/P_exspectatus_v1/priExs1) Max Planck Institite for Developmental Genetics 2015-07-14 2015-07-15 2015-07-236.222%
11burXyl1Bursaphelenchus
xylophilus
Pine wood nematode Nov. 2011 (WS229/B. xylophilus Ka4C1/burXyl1) Wellcome Trust Sanger Institute B. xylophilus genome project 2015-07-09 2015-07-09 2015-07-096.291%
12ancCey1Ancylostoma
ceylanicum
A. ceylanicum Mar. 2014 (WS243/Acey_2013.11.30.genDNA/ancCey1) Cornell University Ancylostoma ceylanicum genome project 2015-07-15 2015-07-15 2015-07-239.736%
13haeCon2Haemonchus
contortus
Barber pole worm Jul. 2013 (WormBase WS239/haeCon2) Sanger Institute 2015-07-02 2015-07-06 2015-07-078.936%
14necAme1Necator
americanus
N. americanus Dec. 2013 (WS242/N_americanus_v1/necAme1) The Genome Institute at Washington University 2015-07-15 2015-07-15 2015-07-238.902%
15panRed1Panagrellus
redivivus
Microworm Feb. 2013 (Pred3/panRed1) California Institute of Technology P. redivivus genome project 2015-07-01 2015-07-01 2015-07-016.585%
16hetBac1Heterorhabditis
bacteriophora
H. bacteriophora/m31e Aug. 2011 (WS229/H. bacteriophora 7.0/hetBac1) Washington University Genome Sequencing Center Heterorhabditis_bacteriophora-7.0 2015-07-14 2015-07-15 2015-07-2310.486%
17ascSuu1Ascaris
suum
Pig roundworm Sep. 2012 (WS229/AscSuum_1.0/ascSuu1) Beijing Genomics Institute 2015-07-13 2015-07-14 2015-07-235.722%
18strRat2Strongyloides
ratti
Threadworm Sep. 2014 (S. ratti ED321/strRat2) Wellcome Trust Sanger Institute S. ratti genome project 2015-07-08 2015-07-08 2015-07-095.669%
19triSpi1Trichinella
spiralis
Trichinella Jan. 2011 (WS225/Trichinella_spiralis-3.7.1/triSpi1) WashU School of Medicine T. spiralis genome project 2015-07-10 2015-07-15 2015-07-232.848%
20triSui1Trichuris
suis
Whipworm Jul. 2014 (WS243/T. suis DCEP-RM93M male/triSui1) University of Melboure T. suis (male) genome project 2015-07-10 2015-07-15 2015-07-232.917%
21melInc2Meloidogyne
incognita
M. incognita Feb. 2008 (M. incognita WS245/PRJEA28837/melInc2) Sanger and Genoscope 2015-06-30 2015-06-30 2015-06-303.516%
22melHap1Meloidogyne
hapla
M. hapla Sep. 2008 (M. hapla VW9 WS210/melHap1) The Center for the Biology of Nematode Parasitism, N.C. State 2010-09-21 2010-09-21 2015-06-263.916%
23bruMal2Brugia
malayi
Filarial worm May. 2014 (WS244/B_malayi-3.1/bruMal2) University of Pittsburgh B. malayi genome project 2015-08-11 2015-08-11 2015-08-115.065%
24oncVol1Onchocerca
volvulus
O. volvulus Nov. 2013 (WS241/O_volvulus_Cameroon_v3/oncVol1) Wellcome Trust Sanger Institute O. volvulus genome project 2015-08-10 2015-08-10 2015-08-105.193%
25loaLoa1Loa
loa
Eye worm Jul. 2012 (WS235/L_loa_Cameroon_isolate/loaLoa1) Broad Institute L. loa genome project 2015-07-10 2015-07-15 2015-07-235.056%
26dirImm1Dirofilaria
immitis
Dog heartworm Sep. 2013 (WS240/D. immitis v2.2/dirImm1) Edinburgh University D. immitis genome project 2015-07-09 2015-07-09 2015-07-235.005%