Fr3 conservation alignment
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see also
- Fugu 8-way Fr3 Genome size statistics
- Fugu 8-way Fr3 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date | source version |
Repeat Masker |
Window Masker |
chain on fr3 |
% of fr3 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | fr3 | Takifugu Rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | N/A | N/A |
| 02 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2011-12-01 | 70.912% |
| 03 | oreNil1 | Oreochromis niloticus | Nile tilapia | Jan. 2011 (Nile tilapia/oreNil1) | Broad Institute of MIT and Harvard Orenil1.0 (GCA_000188235.1) | 2011-11-30 | 2011-11-30 | 2011-12-02 | 57.240% |
| 04 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2011-12-02 | 55.527% |
| 05 | gadMor1 | Gadus morhua | Atlantic cod | May. 2010 (Genofisk GadMor_May2010/gadMor1) | Genofisk GadMor_May2010 (GCA_000231765.1) | 2011-12-29 | 2012-01-04 | 2012-01-14 | 30.327% |
| 06 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2011-12-02 | 43.863% |
| 07 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) | 2010-12-03 | N/A | 2011-12-02 | 22.823% |
| 08 | latCha1 | Latimeria chalumnae | Coelacanth | Aug. 2011 (LatCha1/latCha1) | Broad LatCha1 (GCA_000225785.1) | 2012-01-11 | 2012-01-12 | 2012-01-13 | 13.735% |
