GalGal6 77-way Genome size statistics

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see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order
count/
ftp src
ucsc
db name/
genome-preview
chrom
count
total
size
non-N
bases
N base
count
% masked common name/
src info
coverage N50
chrom.sizes
alignment type % of galGal6
matched
(chainLink table)
chain
minScore
chain
linearGap
01galGal6 464 1,065,365,4251,055,580,959 9,784,466% 21.41 Chicken82X 91315245 N/AN/A N/A loose
02melGal5 231,286 1,128,339,1361,093,044,709 35,294,427% 22.09 Turkey35X 59006440 RecipBest94.495% 1000 loose
03cotJap2 2,012 927,656,957917,259,253 10,397,704% 20.11 Japanese quail73X 82189922 RecipBest90.071% 1000 loose
04aquChr2 1,141 1,192,725,7441,180,017,133 12,708,611% 18.95 Golden eagle88X 9230743 SyntenicNet87.687% 1000 loose
05halLeu1 1,023 1,178,409,4811,159,246,344 19,163,137% 18.79 Bald eagle  9145499 SyntenicNet86.923% 1000 loose
06nipNip1 59,555 1,223,863,0291,189,447,576 34,415,453% 19.25 Crested ibis  5211696 SyntenicNet86.903% 1000 loose
07aptFor1 10,672 1,254,347,4401,182,540,656 71,806,784% 19.06 Emperor penguin  5071598 SyntenicNet86.834% 1000 loose
08falPer1 7,021 1,171,973,4311,153,404,348 18,569,083% 18.69 Peregrine falcon137.6X 3935757 SyntenicNet86.500% 1000 loose
09falChe1 5,863 1,174,811,7151,150,993,769 23,817,946% 18.62 Saker falcon147X 4154532 SyntenicNet86.342% 1000 loose
10chaVoc2 15,167 1,219,859,5831,185,946,782 33,912,801% 20.01 Killdeer  3657050 SyntenicNet86.267% 1000 loose
11pygAde1 19,264 1,216,600,0331,162,442,438 54,157,595% 19.18 Adelie penguin  5118896 SyntenicNet85.892% 1000 loose
12egrGar1 11,791 1,206,501,9341,157,806,531 48,695,403% 19.80 Little egret  3067157 RecipBest85.589% 1000 loose
13anaPla1 78,488 1,105,052,3511,069,972,754 35,079,597% 20.21 Mallard duck60X 1233631 RecipBest85.509% 1000 loose
14pelCri1 63,982 1,160,924,6931,156,708,760 4,215,933% 19.62 Dalmatian pelican  43364 RecipBest85.344% 1000 loose
15fulGla1 57,389 1,141,395,6461,135,628,672 5,766,974% 18.53 Northern fulmar  47208 RecipBest85.332% 1000 loose
16carCri1 53,474 1,132,245,4251,127,945,763 4,299,662% 18.33 Red-legged seriema  55197 RecipBest85.094% 1000 loose
17lepDis1 57,160 1,136,244,9521,133,136,126 3,108,826% 18.53 Cuckoo roller  62640 RecipBest85.021% 1000 loose
18halAlb1 50,905 1,133,549,8651,128,456,298 5,093,567% 18.23 White-tailed eagle  57319 RecipBest84.997% 1000 loose
19phoRub1 76,190 1,132,201,9571,127,827,298 4,374,659% 18.76 American flamingo  38071 RecipBest84.793% 1000 loose
20gavSte1 61,831 1,129,694,8671,122,827,446 6,867,421% 18.35 Red-throated loon  45523 RecipBest84.717% 1000 loose
21balPav1 53,491 1,127,622,2861,123,527,683 4,094,603% 18.94 Crowned crain  52178 RecipBest84.687% 1000 loose
22opiHoa1 10,256 1,203,712,2461,142,165,867 61,546,379% 19.75 Hoatzin  2937227 RecipBest84.579% 1000 loose
23phaLep1 66,785 1,152,958,5071,147,080,466 5,878,041% 19.71 White-tailed tropicbird  47896 RecipBest84.519% 1000 loose
24tauEry1 59,587 1,155,540,7331,148,734,661 6,806,072% 20.59 Red crested turaco  56334 RecipBest84.485% 1000 loose
25phaCar1 64,312 1,138,967,8421,130,205,178 8,762,664% 18.22 Great cormorant  48427 RecipBest84.182% 1000 loose
26tytAlb1 62,122 1,120,143,0881,111,297,855 8,845,233% 18.58 Barn owl  52818 RecipBest84.122% 1000 loose
27capCar1 70,122 1,119,683,0661,115,277,614 4,405,452% 20.58 Chuck-will's-widow  46345 RecipBest83.573% 1000 loose
28cucCan1 14,930 1,153,894,2251,126,420,809 27,473,416% 20.36 Common cuckoo  2989832 RecipBest83.150% 1000 loose
29colLiv1 14,923 1,107,989,0851,086,925,875 21,063,210% 19.83 Rock pigeon60X 3148738 SyntenicNet83.073% 1000 loose
30chlUnd1 59,693 1,086,566,3391,082,961,347 3,604,992% 20.11 Houbara bustard  45221 RecipBest83.041% 1000 loose
31mesUni1 67,520 1,087,290,8531,083,478,027 3,812,826% 19.49 Brown roatelo  47102 RecipBest82.649% 1000 loose
32pteGut1 58,607 1,069,324,2951,065,718,737 3,605,558% 19.33 Yellow-throated sandgrouse  49530 RecipBest82.523% 1000 loose
33eurHel1 62,699 1,088,019,6371,083,028,646 4,990,991% 18.93 Sunbittern  47243 RecipBest82.426% 1000 loose
34strCam1 6,915 1,225,041,8961,184,788,736 40,253,160% 18.41 Ostrich  3593425 RecipBest82.389% 1000 loose
35melUnd1 25,212 1,117,373,6191,086,614,815 30,758,804% 19.62 Budgerigar7X 10614383 SyntenicNet81.694% 1000 loose
36merNub1 53,499 1,062,961,5561,058,508,606 4,452,950% 19.36 Northern carmine bee-eater  48089 RecipBest81.018% 1000 loose
37apaVit1 54,728 1,070,836,4171,066,296,614 4,539,803% 19.97 Bar tailed trogon  56673 RecipBest81.010% 1000 loose
38colStr1 70,188 1,075,931,5971,072,170,539 3,761,058% 19.51 Speckled mousebird  46063 RecipBest80.987% 1000 loose
39corBra1 10,547 1,091,312,7831,051,781,861 39,530,922% 19.16 American crow  6953989 SyntenicNet80.978% 1000 loose
40bucRhi1 62,257 1,065,782,7911,048,779,794 17,002,997% 18.06 Rhinoceros hornbill  53203 RecipBest80.812% 1000 loose
41pseHum1 5,406 1,042,997,6321,030,030,436 12,967,196% 20.21 Tibetan ground jay96.25X 16337386 SyntenicNet80.622% 1000 loose
42amaVit1 182,974 1,175,404,0421,128,255,752 47,148,290% 18.36 Parrot24X 19239 RecipBest80.577% 1000 loose
43corCor1 1,298 1,049,947,9051,022,448,831 27,499,074% 19.02 Hooded crow  16358221 SyntenicNet80.574% 1000 loose
44serCan1 304,397 1,152,095,5371,127,230,315 24,865,222% 21.84 Canary  17815079 SyntenicNet79.903% 1000 loose
45calAnn1 54,736 1,105,676,4121,067,027,607 38,648,805% 20.21 Anna's hummingbird  4052191 SyntenicNet79.733% 1000 loose
46acaChl1 53,876 1,035,892,4721,031,114,448 4,778,024% 18.45 Rifleman  64469 RecipBest79.489% 1000 loose
47ficAlb2 21,428 1,118,343,5871,102,323,882 16,019,705% 24.04 Collared flycatcher60X 64724594 SyntenicNet79.354% 1000 loose
48geoFor1 27,239 1,065,292,1811,041,286,029 24,006,152% 19.99 Medium ground finch115X 5255844 SyntenicNet79.299% 1000 loose
49zonAlb1 6,018 1,052,600,5611,006,293,510 46,307,051% 20.03 White-throated sparrow63X 4866725 SyntenicNet78.645% 1000 loose
50araMac1 192,790 1,204,700,227997,522,769 207,177,458% 16.49 Scarlet macaw26X 15974 RecipBest76.180% 1000 loose
51picPub1 31,254 1,167,323,9351,123,919,997 43,403,938% 28.93 Downy woodpecker  2093929 RecipBest74.258% 1000 loose
52taeGut2 37,096 1,232,135,5911,222,864,691 9,270,900% 8.11 Zebra finch5.5X 62374962 SyntenicNet73.989% 1000 loose
53tinGut2 82,514 1,047,056,4931,024,813,426 22,243,067% 19.39 White throated tinamou  246268 RecipBest73.577% 1000 loose
54chrPic2 78,595 2,365,766,5622,173,204,089 192,562,473% 31.52 Painted turtle15X 7072151 SyntenicNet51.724% 1000 loose
55cheMyd1 140,023 2,208,410,3772,110,381,997 98,028,380% 29.65 Green seaturtle110X 3864108 RecipBest51.019% 1000 loose
56allSin1 9,317 2,270,567,7452,198,602,449 71,965,296% 37.95 Chinese alligator  2188296 RecipBest46.056% 1000 loose
57allMis1 14,645 2,174,259,8882,128,720,123 45,539,765% 37.18 American alligator68X 508966 RecipBest44.801% 1000 loose
58pelSin1 19,904 2,202,483,7522,106,639,384 95,844,368% 33.82 Chinese softshell turtle105X 3350749 RecipBest41.985% 1000 loose
59apaSpi1 286,620 1,931,078,8471,877,982,184 53,096,663% 29.87 Spiny softshell turtle33.4X 2306994 RecipBest38.375% 1000 loose
60pytBiv1 39,113 1,435,052,1521,384,550,427 50,501,725% 26.24 Burmese python  213970 Net15.806% 1000 loose
61anoCar2 6,457 1,799,143,5871,701,353,767 97,789,820% 41.98 Lizard7.1X 150641573 Net14.527% 1000 loose
62thaSir1 7,930 1,424,897,8671,122,623,622 302,274,245% 34.39 Garter snake72X 647592 Net11.754% 1000 loose
63xenTro9 6,822 1,440,398,4541,369,865,365 70,533,089% 34.42 X. tropicalis7.6X 135134832 Net8.102% 1000 loose
64xenLae2 108,033 2,718,433,8052,408,724,787 309,709,018% 40.59 African clawed frog30X 136570856 Net7.927% 1000 loose
65nanPar1 25,187 2,053,849,5261,977,771,384 76,078,142% 38.90 Tibetan frog83X 1069101 Net7.564% 1000 loose
66hg38 595 3,257,347,2823,095,978,588 161,368,694% 52.10 Human20X 145138636 Net11.459% 5000 loose
67mm10 66 2,730,871,7742,652,783,500 78,088,274% 45.18 Mouse20X 130694993 Net8.388% 5000 loose
68danRer11 1,923 1,679,203,4691,674,509,851 4,693,618% 51.76 Zebrafish30X 52186027 Net6.352% 1000 loose
69angJap1 323,727 1,151,134,0831,024,038,278 127,095,805% 24.46 Japanese eel  52849 Net5.408% 1000 loose
70oreNil3 2,567 1,009,856,5161,005,626,515 4,230,001% 31.17 Nile tilapia44X 37007722 Net4.925% 1000 loose
71gasAcu1 23 463,354,448446,627,861 16,726,587% 2.58 Stickleback6X 20083130 Net4.623% 1000 loose
72oryLat2 7,189 869,000,216700,386,597 168,613,619% 33.09 Medaka10.6X 29908082 Net4.565% 1000 loose
73mayZeb1 3,725 849,595,388713,527,863 136,067,525% 25.04 Zebra mbuna129.7X 3702874 Net4.539% 1000 loose
74tetNig2 27 358,618,246302,314,788 56,303,458% 20.27 Tetraodon7.9X 13390619 Net4.148% 1000 loose
75fr3 6,835 391,484,715350,961,831 40,522,884% 19.01 Fugu8.5X 11516971 Net4.007% 1000 loose
76petMar3 12,062 1,130,433,8971,043,181,598 87,252,299% 45.11 Lamprey100.0X 11932523 Net3.658% 1000 loose
77letCam1 86,126 1,030,678,995853,452,256 177,226,739% 42.40 Arctic lamprey  1051965 Net3.335% 1000 loose