GalGal6 77-way conservation alignment

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on galGal6
% of galGal6
matched
(chainLink table)
01galGal6Gallus
gallus
Chicken Mar. 2018 (GRCg6a/galGal6) Genome Reference Consortium 2018-10-11 2018-10-11 N/AN/A
02melGal5Meleagris
gallopavo
Turkey Nov. 2014 (Turkey_5.0/melGal5) Turkey Genome Consortium 2017-01-12 2017-01-13 2018-10-1794.495%
03cotJap2Coturnix
japonica
Japanese quail Mar. 2016 (Coturnix japonica 2.0/cotJap2) McDonnell Genome Institute - Washington University School of Medicine 2018-10-24 2018-10-25 2018-10-2690.071%
04aquChr2Aquila
chrysaetos
canadensis
Golden eagle Oct. 2014 (aquChr-1.0.2/aquChr2) WashU 2015-03-05 2015-03-06 2018-10-1787.687%
05halLeu1Haliaeetus
leucocephalus
Bald eagle Aug 2014 (Haliaeetus_leucocephalus-4.0/halLeu1) The Bald Eagle Consortium GCA_000737465.1 2014-08-14 2014-08-15 2018-10-2086.923%
06nipNip1Nipponia
nippon
Crested ibis Jun 2014 (ASM70822v1/nipNip1) College of Medicine and Forensics, Xi'an Jiaotong University GCA_000708225.1 2014-07-01 2014-07-02 2018-10-2086.903%
07aptFor1Aptenodytes
forsteri
Emperor penguin 06 Jun 2014 (ASM69914v1/aptFor1) BGI GCA_000699145.1 2014-06-26 2014-06-30 2018-10-1786.834%
08falPer1Falco
peregrinus
Peregrine falcon Feb 2013 (F_peregrinus_v1.0/falPer1) BGI GCA_000337955.1 2013-06-28 2013-06-28 2018-10-1986.500%
09falChe1Falco
cherrug
Saker falcon Feb 2013 (F_cherrug_v1.0/falChe1) BGI GCA_000337975.1 2013-06-27 2013-06-27 2018-10-1986.342%
10chaVoc2Charadrius
vociferus
Killdeer Aug 2014 (ASM70802v2/chaVoc2) BGI GCA_000708025.2 2014-08-14 2014-08-15 2018-10-1886.267%
11pygAde1Pygoscelis
adeliae
Adelie penguin Jun 2014 (ASM69910v1/pygAde1) BGI GCA_000699105.1 2014-07-02 2014-07-02 2018-10-2185.892%
12egrGar1Egretta
garzetta
Little egret May 2014 (ASM68718v1/egrGar1) College of Medicine and Forensics, Xi'an Jiaotong University GCA_000687185.1 2014-06-28 2014-07-01 2018-10-1985.589%
13anaPla1Anas
platyrhynchos
Mallard duck Apr 2013 (BGI_duck_1.0/anaPla1) State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1 2013-06-27 2013-06-27 2018-10-1785.509%
14pelCri1Pelecanus
crispus
Dalmatian pelican May 2014 (ASM68737v1/pelCri1) BGI GCA_000687375.1 2014-07-01 2014-07-02 2018-10-2085.344%
15fulGla1Fulmarus
glacialis
Northern fulmar May 2014 (ASM69083v1/fulGla1) BGI GCA_000690835.1 2014-06-29 2014-07-01 2018-10-1985.332%
16carCri1Cariama
cristata
Red-legged seriema May 2014 (ASM69053v1/carCri1) BGI GCA_000690535.1 2014-06-27 2014-07-01 2018-10-1885.094%
17lepDis1Leptosomus
discolor
Cuckoo roller May 2014 (ASM69178v1/lepDis1) BGI GCA_000691785.1 2014-06-30 2014-07-01 2018-10-2085.021%
18halAlb1Haliaeetus
albicilla
White-tailed eagle May 2014 (ASM69140v1/halAlb1) BGI GCA_000691405.1 2014-06-29 2014-07-01 2018-10-2084.997%
19phoRub1Phoenicopterus
ruber
ruber
American flamingo May 2014 (ASM68726v1/phoRub1) BGI GCA_000687265.1 2014-07-02 2014-07-02 2018-10-2184.793%
20gavSte1Gavia
stellata
Red-throated loon May 2014 (ASM69087v1/gavSte1) BGI GCA_000690875.1 2014-06-29 2014-07-01 2018-10-1984.717%
21balPav1Balearica
pavonina
gibbericeps
Crowned crain Jun 2014 (ASM70989v1/balPav1) BGI GCA_000709895.1 2014-06-27 2014-06-30 2018-10-1884.687%
22opiHoa1Opisthocomus
hoazin
Hoatzin May 2014 (ASM69207v1/opiHoa1) BGI GCA_000692075.1 2014-07-01 2014-07-02 2018-10-2084.579%
23phaLep1Phaethon
lepturus
White-tailed tropicbird May 2014 (ASM68728v1/phaLep1) BGI GCA_000687285.1 2014-07-01 2014-07-02 2018-10-2084.519%
24tauEry1Tauraco
erythrolophus
Red crested turaco Jun 2014 (ASM70936v1/tauEry1) BGI GCA_000709365.1 2014-07-02 2014-07-02 2018-10-2184.485%
25phaCar1Phalacrocorax
carbo
Great cormorant Jun 2014 (ASM70892v1/phaCar1) BGI GCA_000708925.1 2014-07-02 2014-07-02 2018-10-2084.182%
26tytAlb1Tyto
alba
Barn owl May 2014 (ASM68720v1/tytAlb1) BGI GCA_000687205.1 2014-07-02 2014-07-02 2018-10-2184.122%
27capCar1Caprimulgus
carolinensis
Chuck-will's-widow Jun 2014 (ASM70074v1/capCar1) BGI GCA_000700745.1 2014-06-27 2014-06-30 2018-10-1883.573%
28cucCan1Cuculus
canorus
Common cuckoo Jun 2014 (ASM70932v1/cucCan1) BGI GCA_000709325.1 2014-06-28 2014-07-01 2018-10-1983.150%
29colLiv1Columba
livia
Rock pigeon Feb 2013 (Cliv_1.0/colLiv1) BGI GCA_000337935.1 2013-06-27 2013-06-27 2018-10-1883.073%
30chlUnd1Chlamydotis
undulata
macqueenii
Houbara bustard Jun 2014 (ASM69519v1/chlUnd1) BGI GCA_000695195.1 2014-06-28 2014-07-01 2018-10-1883.041%
31mesUni1Mesitornis
unicolor
Brown roatelo Jun 2014 (ASM69576v1/mesUni1) BGI GCA_000695765.1 2014-06-30 2014-07-01 2018-10-2082.649%
32pteGut1Pterocles
gutturalis
Yellow-throated sandgrouse Jun 2014 (ASM69924v1/pteGut1) BGI GCA_000699245.1 2014-07-02 2014-07-02 2018-10-2182.523%
33eurHel1Eurypyga
helias
Sunbittern May 2014 (ASM69077v1/eurHel1) BGI GCA_000690775.1 2014-06-29 2014-07-01 2018-10-1982.426%
34strCam1Struthio
camelus
australis
Ostrich 06 Jun-2014 (ASM69896v1/strCam1) BGI GCA_000698965.1 2014-06-12 2014-06-12 2018-10-2182.389%
35melUnd1Melopsittacus
undulatus
Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 2018-10-2081.694%
36merNub1Merops
nubicus
Northern carmine bee-eater May 2014 (ASM69184v1/merNub1) BGI GCA_000691845.1 2014-06-30 2014-07-01 2018-10-2081.018%
37apaVit1Apaloderma
vittatum
Bar tailed trogon 16 Jun 2014 (ASM70340v1/apaVit1) BGI GCA_000703405.1 2014-06-26 2014-06-30 2018-10-1781.010%
38colStr1Colius
striatus
Speckled mousebird May 2014 (ASM69071v1/colStr1) BGI GCA_000690715.1 2014-06-28 2014-07-01 2018-10-1880.987%
39corBra1Corvus
brachyrhynchos
American crow Jun 2014 (ASM69197v1/corBra1) BGI GCA_000691975.1 2014-06-28 2014-07-01 2018-10-1980.978%
40bucRhi1Buceros
rhinoceros
silvestris
Rhinoceros hornbill Jun 2014 (ASM71030v1/bucRhi1) BGI GCA_000710305.1 2014-08-14 2014-08-15 2018-10-1880.812%
41pseHum1Pseudopodoces
humilis
Tibetan ground jay Jan 2013 (PseHum1.0/pseHum1) Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1 2013-06-27 2013-06-27 2018-10-2180.622%
42amaVit1Amazona
vittata
Parrot Jan. 2013 (AV1/amaVit1) Puerto Rican Parrot Genome Project AV1 2013-03-27 2013-03-27 2018-10-1780.577%
43corCor1Corvus
cornix
cornix
Hooded crow Aug 2014 (Hooded_Crow_genome/corCor1) Uppsala University GCA_000738735.1 2014-08-14 2014-08-15 2018-10-1980.574%
44serCan1Serinus
canaria
Canary 15 Jan-2014 (SCA1/serCan1) MPI MOLGEN GCA_000534875.1 2014-04-15 2014-04-15 2018-10-2179.903%
45calAnn1Calypte
anna
Anna's hummingbird Jun 2014 (ASM69908v1/calAnn1) BGI GCA_000699085.1 2014-06-27 2014-06-30 2018-10-1879.733%
46acaChl1Acanthisitta
chloris
Rifleman 27 May 2014 (ASM69581v1/acaChl1) BGI GCA_000695815.1 2014-06-26 2014-06-30 2018-10-1779.489%
47ficAlb2Ficedula
albicollis
Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) Uppsala University GCA_000247815.2 2013-06-29 2013-06-29 2018-10-1779.354%
48geoFor1Geospiza
fortis
Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) Beijing Genomics Institute 2012-07-26 2012-07-26 2018-10-1979.299%
49zonAlb1Zonotrichia
albicollis
White-throated sparrow Apr 2013 (ASM38545v1/zonAlb1) White-throated sparrow consortium GCA_000385455.1 2013-06-26 2013-06-26 2018-10-1678.645%
50araMac1Ara
macao
Scarlet macaw Jun 2013 (SMACv1.1/araMac1) Texas A&M University GCA_000400695.1 2013-06-28 2013-06-28 2018-10-1776.180%
51picPub1Picoides
pubescens
Downy woodpecker Jun 2014 (ASM69900v1/picPub1) BGI GCA_000699005.1 2014-07-01 2014-07-02 2018-10-2174.258%
52taeGut2Taeniopygia
guttata
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) Washington University School of Medicine 2013-06-05 2013-06-05 2018-10-1773.989%
53tinGut2Tinamus
guttatus
White throated tinamou Aug 2014 (ASM70537v2/tinGut2) BGI GCA_000705375.2 2014-08-14 2014-08-15 2018-10-1773.577%
54chrPic2Chrysemys
picta
bellii
Painted turtle Mar. 2014 (v3.0.3/chrPic2) International Painted Turtle Genome Sequencing Consortium 2014-04-29 2014-04-10 2018-10-1851.724%
55cheMyd1Chelonia
mydas
Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) BGI GCA_000344595.1 2013-08-26 2013-08-26 2018-10-1851.019%
56allSin1Alligator
sinensis
Chinese alligator 29 Aug 2013 (ASM45574v1/allSin1) BGI-shenzhen GCA_000455745.1 2013-09-06 2013-09-06 2018-10-1746.056%
57allMis1Alligator
mississippiensis
American alligator Aug. 2012 (allMis0.2/allMis1) International Crocodilian Genomes Working Group 2013-06-07 2012-08-28 2018-10-1744.801%
58pelSin1Pelodiscus
sinensis
Chinese softshell turtle Oct 2011 (PelSin_1.0/pelSin1) Soft-shell Turtle Genome Consortium GCA_000230535.1 2013-07-01 2013-07-01 2018-10-2041.985%
59apaSpi1Apalone
spinifera
Spiny softshell turtle May 2013 (ASM38561v1/apaSpi1) WUGSC GCA_000385615.1 2013-08-26 2013-08-26 2018-10-1738.375%
60pytBiv1Python
bivittatus
Burmese python Sep. 2013 (Python_molurus_bivittatus-5.0.2/pytBiv1) The Consortium for Comparative Genomics, UC Denver GCA_000186305.2 2014-04-11 2014-04-10 2018-10-2115.806%
61anoCar2Anolis
carolinensis
Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2018-10-1714.527%
62thaSir1Thamnophis
sirtalis
Garter snake Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1) The Genome Institute at Washington University School of Medicine (WUGSC) 2018-03-12 2018-03-12 2018-10-2111.754%
63xenTro9Xenopus
tropicalis
X. tropicalis Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) DOE Joint Genome Institute 2017-03-27 2017-03-27 2018-10-178.102%
64xenLae2Xenopus
laevis
African clawed frog Aug. 2016 (Xenopus_laevis_v2/xenLae2) International Xenopus Sequencing Consortium 2017-03-29 2017-03-29 2018-10-217.927%
65nanPar1Nanorana
parkeri
Tibetan frog Mar. 2015 (BGI_ZX_2015/nanPar1) ASM93562v1 2015-03-19 2015-03-20 2018-10-207.564%
66hg38Homo
sapiens
Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15) 2014-01-10 2013-12-25 2018-10-1211.459%
67mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2018-10-128.388%
68danRer11Danio
rerio
Zebrafish May 2017 (GRCz11/danRer11) Genome Reference Consortium Zebrafish Build 11 (GCA_000002035.4) 2017-06-06 2017-06-02 2018-10-176.352%
69angJap1Anguilla
japonica
Japanese eel 18 Mar-2014 (japanese_eel_genome_v1_25_oct_2011 japonica_c401b400k25m200 sspacepremiumk3a02n24 extra.final.scaffolds/angJap1) ZF-screens B.V. GCA_000470695.1 2014-04-15 2014-04-16 2018-10-175.408%
70oreNil3Oreochromis
niloticus
Nile tilapia Nov. 2016 (ASM185804v2/oreNil3) University of Maryland 2017-07-27 2017-07-27 2018-10-204.925%
71gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 2018-10-174.623%
72oryLat2Oryzias
latipes
Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2018-10-204.565%
73mayZeb1Maylandia
zebra
Zebra mbuna Mar 2012 (MetZeb1.1/mayZeb1) Broad Institute GCA_000238955.2 2013-08-28 2013-08-28 2018-10-204.539%
74tetNig2Tetraodon
nigroviridis
Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 2018-10-214.148%
75fr3Takifugu
rubripes
Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 2018-10-174.007%
76petMar3Petromyzon
marinus
Lamprey Dec. 2017 (Pmar_germline 1.0/petMar3) University of Kentucky 2018-01-12 2018-01-12 2018-10-173.658%
77letCam1Lethenteron
camtschaticum
Arctic lamprey Sep 2013 (LetJap1.0/letCam1) Institute of Molecular and Cell Biology GCA_000466285.1 2013-09-19 2013-09-19 2018-10-203.335%