GalGal6 77-way conservation lastz parameters

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See Also


The default
scoring matrix is:
  The HoxD55
scoring matrix is:
 The human-chimp.v2
scoring matrix is:
 ACGT
A91-114-31-123
C-114100-125-31
G-31-125100-114
T-123-31-11491

O=400 E=30

 
 ACGT
A91-90-25-100
C-90100-100-25
G-25-100100-90
T-100-25-9091

O=400 E=30

 
 ACGT
A90-330-236-356
C-330100-318-236
G-236-318100-330
T-356-236-33090

O=600 E=150

do not edit, automatically generated table

query abridged
repeats(no)
M(0)K(3000) L(3000)QY(9400) program
run
E(30)H(0) O(400)T(1) chain table
date
% of galGal6
matched
(chainLink table)
% of query
matched
(chainLinkGalGal6)
Turkey melGal5 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1794.495% 92.491%
Japanese quail cotJap2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2690.071% 96.366%
Golden eagle aquChr2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1787.687% 78.786%
Bald eagle halLeu1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2086.923% 78.856%
Crested ibis nipNip1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2086.903% 78.539%
Emperor penguin aptFor1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1786.834% 77.790%
Peregrine falcon falPer1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1986.500% 79.824%
Saker falcon falChe1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1986.342% 79.770%
Killdeer chaVoc2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1886.267% 78.316%
Adelie penguin pygAde1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2185.892% 77.561%
Little egret egrGar1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1985.589% 77.936%
Mallard duck anaPla1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1785.509% 83.814%
Dalmatian pelican pelCri1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2085.344% 77.377%
Northern fulmar fulGla1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1985.332% 78.234%
Red-legged seriema carCri1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1885.094% 78.856%
Cuckoo roller lepDis1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2085.021% 78.924%
White-tailed eagle halAlb1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2084.997% 78.352%
American flamingo phoRub1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2184.793% 78.057%
Red-throated loon gavSte1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1984.717% 78.429%
Crowned crain balPav1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1884.687% 78.619%
Hoatzin opiHoa1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2084.579% 78.069%
White-tailed tropicbird phaLep1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2084.519% 78.068%
Red crested turaco tauEry1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2184.485% 77.102%
Great cormorant phaCar1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2084.182% 78.405%
Barn owl tytAlb1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2184.122% 79.540%
Chuck-will's-widow capCar1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1883.573% 77.901%
Common cuckoo cucCan1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1983.150% 78.921%
Rock pigeon colLiv1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1883.073% 79.480%
Houbara bustard chlUnd1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1883.041% 78.986%
Brown roatelo mesUni1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2082.649% 79.029%
Yellow-throated sandgrouse pteGut1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2182.523% 79.317%
Sunbittern eurHel1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1982.426% 78.684%
Ostrich strCam1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2182.389% 74.035%
Budgerigar melUnd1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2081.694% 78.351%
Northern carmine bee-eater merNub1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2081.018% 79.394%
Bar tailed trogon apaVit1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1781.010% 79.322%
Speckled mousebird colStr1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1880.987% 78.528%
American crow corBra1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1980.978% 80.022%
Rhinoceros hornbill bucRhi1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1880.812% 78.727%
Tibetan ground jay pseHum1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2180.622% 80.898%
Parrot amaVit1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1780.577% 77.539%
Hooded crow corCor1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1980.574% 80.730%
Canary serCan1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2179.903% 74.870%
Anna's hummingbird calAnn1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1879.733% 79.955%
Rifleman acaChl1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1779.489% 79.366%
Collared flycatcher ficAlb2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1779.354% 75.638%
Medium ground finch geoFor1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1979.299% 79.439%
White-throated sparrow zonAlb1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1678.645% 79.381%
Scarlet macaw araMac1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1776.180% 77.878%
Downy woodpecker picPub1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2174.258% 69.321%
Zebra finch taeGut2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1773.989% 73.358%
White throated tinamou tinGut2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1773.577% 75.473%
Painted turtle chrPic2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1851.724% 33.105%
Green seaturtle cheMyd1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1851.019% 33.557%
Chinese alligator allSin1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1746.056% 23.607%
American alligator allMis1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1744.801% 24.041%
Chinese softshell turtle pelSin1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2041.985% 25.358%
Spiny softshell turtle apaSpi1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1738.375% 25.398%
Burmese python pytBiv1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2115.806% 11.426%
Lizard anoCar2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1714.527% 8.505%
Garter snake thaSir1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-2111.754% 9.922%
X. tropicalis xenTro9 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-178.102% 6.961%
African clawed frog xenLae2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-217.927% 5.220%
Tibetan frog nanPar1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-207.564% 4.273%
Human hg38 no5022006000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-1211.459% 4.977%
Mouse mm10 no022006000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-128.388% 3.813%
Zebrafish danRer11 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-176.352% 5.913%
Japanese eel angJap1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-175.408% 7.077%
Nile tilapia oreNil3 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-204.925% 6.828%
Stickleback gasAcu1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-174.623% 12.925%
Medaka oryLat2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-204.565% 7.741%
Zebra mbuna mayZeb1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-204.539% 7.874%
Tetraodon tetNig2 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-214.148% 15.780%
Fugu fr3 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-174.007% 13.581%
Lamprey petMar3 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-173.658% 4.837%
Arctic lamprey letCam1 no25422004000HoxD55.q 3400lastz-distrib-1.04.00/bin/lastz3020004001 2018-10-203.335% 4.611%