GorGor3 conservation alignment
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see also
- Gorilla 11-way GorGor3 Genome size statistics
- Gorilla 11-way GorGor3 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date | source version |
Repeat Masker |
Window Masker |
chain on gorGor3 |
% of gorGor3 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | gorGor3 | Gorilla gorilla gorilla | Gorilla | May 2011 (gorGor3.1/gorGor3) | Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) | 2011-11-16 | N/A | N/A | N/A |
| 02 | panTro3 | Pan troglodytes | Chimp | Oct. 2010 (CGSC 2.1.3/panTro3) | CGSC 2.1.3 (GCA_000001515.3) | 2011-02-22 | N/A | 2011-10-26 | 89.043% |
| 03 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | N/A | 2011-10-21 | 91.109% |
| 04 | nomLeu1 | Nomascus leucogenys | Gibbon | Jan. 2010 (GGSC Nleu1.0/nomLeu1) | GGSC (NCBI project 13975, accession GCA_000146795.1) | 2011-11-16 | N/A | 2011-10-26 | 83.476% |
| 05 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | N/A | 2011-10-23 | 86.354% |
| 06 | papHam1 | Papio hamadryas | Baboon | Nov. 2008 (Baylor 1.0/papHam1) | Baylor BCM HGSC Pham_1.0 | 2009-09-02 | N/A | 2011-10-31 | 79.434% |
| 07 | rheMac2 | Macaca mulatta | Rhesus | Jan. 2006 (MGSC Merged 1.0/rheMac2) | Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 | 2009-08-15 | N/A | 2011-10-23 | 79.244% |
| 08 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | N/A | 2011-10-27 | 68.507% |
| 09 | tarSyr1 | Tarsius syrichta | Tarsier | Aug. 2008 (Broad/tarSyr1) | Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) | 2009-09-02 | N/A | 2011-11-05 | 19.482% |
| 10 | micMur1 | Microcebus murinus | Mouse lemur | Jun. 2003 (Broad/micMur1) | Broad Institute micMur1 (NCBI project 19967, ABDC00000000) | 2009-09-02 | N/A | 2011-11-03 | 22.908% |
| 11 | otoGar1 | Otolemur garnettii | Bushbaby | Dec. 2006 (Broad/otoGar1) | Broad version 1 (NCBI project 16955, AAQR00000000) | 2009-09-02 | N/A | 2011-10-27 | 12.017% |
