Hg19 100way conservation alignment

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on hg19
% of hg19
matched
(chainLink table)
01hg19Homo
sapiens
Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 2012-04-19 N/AN/A
02panTro4Pan
troglodytes
Chimp Feb. 2011 (CSAC 2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2013-01-2595.279%
03gorGor3Gorilla
gorilla
gorilla
Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 2013-06-21 2011-10-1789.876%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2009-08-1591.350%
05nomLeu3Nomascus
leucogenys
Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2013-03-2287.764%
06rheMac3Macaca
mulatta
Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2013-07-0482.859%
07macFas5Macaca fasciculariscrab-eating macaque 12-Jun-2013 (GCA_000364345.1) Washington University (WashU)/Macaca_fascicularis_5.0 2013-06-30 2013-06-30 2013-06-3086.666%
08papHam1Papio
hamadryas
Baboon Nov. 2008 (Baylor Pham_1.0/papHam1) Baylor BCM HGSC Pham_1.0 2009-09-02 2012-05-03 2009-09-0282.810%
09chlSab1Chlorocebus sabaeusgreen monkey 12-Jun-2013 (GCA_000409795.1) Vervet Genomics Consortium/Chlorocebus_sabeus 1.0 2013-06-30 2013-06-30 2013-06-3086.446%
10calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2010-02-1170.654%
11saiBol1Saimiri
boliviensis
Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2013-06-3069.598%
12otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2013-07-0254.830%
13tupChi1Tupaia chinensisChinese tree shrew 31-Jan-2013 (GCA_000334495.1) BGI/TupChi_1.0 2013-07-05 2013-07-05 2013-07-0646.558%
14speTri2Spermophilus
tridecemlineatus
Squirrel Nov. 2011 (Broad/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 2013-08-2949.723%
15jacJac1Jaculus jaculuslesser Egyptian jerboa 31-May-2012 (GCA_000280705.1) Broad Institute/JacJac1.0 2013-07-15 2013-07-15 2013-07-1635.106%
16micOch1Microtus ochrogasterPrairie Vole 31-Oct-2012 (GCA_000317375.1) Broad Institute/MicOch1.0 2013-08-26 2013-08-26 2013-08-2732.285%
17criGri1Cricetulus griseusChinese Hamster 12-Jul-2013 (GCA_000419365.1) Beijing Genomics Institution-shenzhen/C_griseus_v1.0 2013-08-28 2013-08-28 2013-09-0133.985%
18mesAur1Mesocricetus auratusgolden hamster 29-Mar-2013 (GCA_000349665.1) Broad Institute/MesAur1.0 2013-08-28 2013-08-28 2013-09-0131.606%
19mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2012-03-0735.249%
20rn5Rattus
norvegicus
Rat Mar. 2012 (RGSC 5.0/rn5) RGSC Rnor_5.0 (GCA_000001895.3) 2012-03-21 2012-03-21 2012-06-2731.662%
21hetGla2Heterocephalus
glaber
Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) 2012-04-14 2012-04-14 2013-07-1747.600%
22cavPor3Cavia
porcellus
Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2009-09-0243.680%
23chiLan1Chinchilla
lanigera
Chinchilla May 2012  (ChiLan1.0/chiLan1) Broad Institute 2012-07-28 2012-07-27 2013-08-3047.012%
24octDeg1Octodon degusbrush-tailed rat 13-Apr-2012 (GCA_000260255.1) Broad Institute/OctDeg1.0 2013-07-07 2013-07-07 2013-07-0741.385%
25oryCun2Oryctolagus
cuniculus
Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 2013-06-21 2009-09-0244.317%
26ochPri3Ochotona
princeps
Pika May 2012 (OchPri3.0/ochPri3) Broad Institute 2013-06-20 2013-06-18 2013-06-1834.676%
27susScr3Sus
scrofa
Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 2012-04-12 2012-04-13 2013-08-2945.977%
28vicPac2Vicugna
pacos
Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) Broad Institute 2013-06-10 2013-06-10 2013-06-1850.193%
29camFer1Camelus ferusBactrian camel 25-Dec-2011 (GCA_000311805.1) The Bactrian Camels Genome Sequencing and Analysis Consortium/CB1 2013-07-12 2013-07-12 2013-07-1350.419%
30turTru2Tursiops
truncatus
Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 2012-04-14 2012-04-14 2013-08-2051.158%
31orcOrc1Orcinus orcaKiller whale 31-Jan-2013 (GCA_000331955.1) Marine mammals/Oorc_1.1 2013-08-20 2013-08-20 2013-08-0152.072%
32panHod1Pantholops hodgsoniiTibetan antelope 28-May-2013 (GCA_000400835.1) BGI/PHO1.0 2013-07-15 2013-07-15 2013-07-1746.863%
33bosTau7Bos
taurus
Cow Oct. 2011 (Baylor Btau_4.6.1/bosTau7) Btau_4.6.1 (NCBI project 12555, accession GCA_000003205.4) 2012-01-04 2012-01-06 2012-01-2346.971%
34oviAri3Ovis
aries
Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) International Sheep Genome Consortium 2013-06-10 2013-06-09 2013-06-2646.833%
35capHir1Capra hircusdomestic goat 31-May-2012 (GCA_000317765.1) International Goat Genome Consortium/CHIR_1.0 2013-07-15 2013-07-15 2013-07-1746.498%
36equCab2Equus
caballus
Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 2013-06-21 2009-09-0257.050%
37cerSim1Ceratotherium
simum
White rhinoceros May 2012 (CerSimSim1.0/cerSim1) Broad Institute 2012-08-28 2012-08-28 2012-10-1958.103%
38felCat5Felis
catus
Cat Sep. 2011 (ICGSC Felis_catus 6.2/felCat5) International Cat Genome Sequencing Consortium Felis_catus-6.2 (NCBI project 16726, accession AANG00000000.2, GCA_000181335.2) 2012-04-12 2012-04-13 2013-07-1352.426%
39canFam3Canis
lupus
familiaris
Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2012-07-0451.848%
40musFur1Mustela
putorius
furo
Ferret  Apr. 2011 (MusPutFur1.0/musFur1) Ferret Genome Sequencing Consortium 2013-03-05 2013-03-05 2013-07-1250.993%
41ailMel1Ailuropoda
melanoleuca
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 2013-06-21 2010-02-0450.022%
42odoRosDiv1Odobenus rosmarus divergensPacific walrus 16-Jan-2013 (GCA_000321225.1) Marine mammals/Oros_1.0 2013-07-12 2013-07-12 2013-07-1353.559%
43lepWed1Leptonychotes weddelliiWeddell seal 29-Mar-2013 (GCA_000349705.1) Broad Institute/LepWed1.0 2013-07-11 2013-07-11 2013-07-1252.424%
44pteAle1Pteropus alectoBlack Flying-fox 06-Aug-2012 (GCA_000325575.1) BGI/ASM32557v1 2013-08-28 2013-08-28 2013-09-0149.670%
45pteVam1Pteropus
vampyrus
Megabat Jul. 2008 (Broad/pteVam1) Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2009-09-02 2012-05-02 2009-09-0245.414%
46myoDav1Myotis DavidiiDavid's Myotis (bat) 17-Aug-2012 (GCA_000327345.1) BGI/ASM32734v1 2013-08-28 2013-08-28 2013-09-0139.790%
47myoLuc2Myotis
lucifugus
Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 2010-11-03 2013-06-21 2013-08-3039.886%
48eptFus1Eptesicus fuscusbig brown bat 25-Jul-2012 (GCA_000308155.1) Broad Institute/EptFus1.0 2013-08-28 2013-08-28 2013-08-3140.221%
49eriEur2Erinaceus
europaeus
Hedgehog May 2012 (EriEur2.0/eriEur2) Broad Institute EriEur2.0 2013-06-12 2013-06-07 2013-07-0926.149%
50sorAra2Sorex
araneus
Shrew Aug. 2008 (Broad/sorAra2) Broad Institute SorAra2.0 2013-05-29 2013-05-29 2013-06-1827.681%
51conCri1Condylura cristataStar-nosed mole 14-Mar-2012 (GCA_000260355.1) Broad Institute/ConCri1.0 2013-07-09 2013-07-09 2013-07-1037.034%
52loxAfr3Loxodonta
africana
Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 2013-06-21 2009-09-0246.636%
53eleEdw1Elephantulus edwardiiCape elephant shrew 01-Aug-2012 (GCA_000299155.1) Broad Institute/EleEdw1.0 2013-07-07 2013-07-07 2013-07-0927.675%
54triMan1Trichechus
manatus
latirostris
Manatee Oct. 2011 (Broad v1.0/triMan1) Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 2012-03-28 2012-03-29 2013-07-1146.580%
55chrAsi1Chrysochloris asiaticaCape golden mole 01-Aug-2012 (GCA_000296735.1) Broad Institute/ChrAsi1.0 2013-07-07 2013-07-07 2013-07-0934.209%
56echTel2Echinops
telfairi
Tenrec Nov. 2012 (Broad/echTel2) Broad/EchTel2.0 2013-05-30 2013-05-30 2013-06-1730.135%
57oryAfe1Orycteropus aferAardvark 24-May-2012 (GCA_000298275.1) Broad Institute/OryAfe1.0 2013-07-07 2013-07-07 2013-07-0941.668%
58dasNov3Dasypus
novemcinctus
Armadillo Dec. 2011 (Baylor/dasNov3) Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 2012-04-12 2012-04-13 2013-07-0946.571%
59monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2009-09-0214.358%
60sarHar1Sarcophilus
harrisii
Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 2012-02-02 2012-02-08 2013-07-107.414%
61macEug2Macropus
eugenii
Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 2010-11-05 2011-12-02 2013-07-116.534%
62ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 2013-06-22 2009-09-027.627%
63falChe1Falco cherrugSaker falcon 05-Feb-2013 (GCA_000337975.1) BGI/F_cherrug_v1.0 2013-06-27 2013-06-27 2013-06-273.812%
64falPer1Falco peregrinusperegrine falcon 05-Feb-2013 (GCA_000337955.1) BGI/F_peregrinus_v1.0 2013-06-28 2013-06-28 2013-06-273.879%
65ficAlb2Ficedula albicollisCollared Flycatcher 27-Jun-2013 (GCA_000247815.2) Uppsala University/FicAlb1.5 2013-06-29 2013-06-29 2013-06-293.715%
66zonAlb1Zonotrichia albicollisWhite-throated sparrow 30-Apr-2013 (GCA_000385455.1) White-throated sparrow consortium/ASM38545v1 2013-06-26 2013-06-26 2013-06-263.476%
67geoFor1Geospiza
fortis
Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) Beijing Genomics Institute 2012-07-26 2012-07-26 2012-07-293.503%
68taeGut2Taeniopygia
guttata
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) Washington University School of Medicine 2013-06-05 2013-06-05 2013-06-175.321%
69pseHum1Pseudopodoces humilisTibetan ground jay 11-Jan-2013 (GCA_000331425.1) Beijing Genomics Institute (BGI)-Shenzhen/PseHum1.0 2013-06-27 2013-06-27 2013-06-293.982%
70melUnd1Melopsittacus
undulatus
Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 2013-06-273.577%
71amaVit1Amazona
vittata
Parrot Jan. 2013 (AV1/amaVit1) Puerto Rican Parrot Genome Project AV1 2013-03-27 2013-03-27 2013-06-283.298%
72araMac1Ara macaoScarlet Macaw 26-Jun-2013 (GCA_000400695.1) Texas A&M University/SMACv1.1 2013-06-28 2013-06-28 2013-06-292.912%
73colLiv1Columba liviaRock pigeon 11-Feb-2013 (GCA_000337935.1) BGI/Cliv_1.0 2013-06-27 2013-06-27 2013-06-293.683%
74anaPla1Anas platyrhynchosMallard duck 26-Apr-2013 (GCA_000355885.1) State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing/BGI_duck_1.0 2013-06-27 2013-06-27 2013-06-273.509%
75galGal4Gallus
gallus
Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 2012-01-04 2012-01-04 2013-06-293.684%
76melGal1Meleagris
gallopavo
Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 2013-06-21 2011-03-282.645%
77allMis1Alligator
mississippiensis
American alligator Aug. 2012 (allMis0.2/allMis1) International Crocodilian Genomes Working Group 2013-06-07 2012-08-28 2013-06-287.084%
78cheMyd1Chelonia mydasgreen seaturtle 18-Mar-2013 (GCA_000344595.1) BGI/CheMyd_1.0 2013-08-26 2013-08-26 2013-08-283.696%
79chrPic1Chrysemys
picta
bellii
Painted turtle Dec. 2011 (v3.0.1/chrPic1) International Painted Turtle Genome Sequencing Consortium (GCA_000241765.1) 2012-03-27 2012-03-29 2013-08-303.716%
80pelSin1Pelodiscus sinensisSoft-shell Turtle 01-Oct-2011 (GCA_000230535.1) Soft-shell Turtle Genome Consortium/PelSin_1.0 2013-07-01 2013-07-01 2013-08-293.268%
81apaSpi1Apalone spiniferaspiny softshell turtle 03-May-2013 (GCA_000385615.1) WUGSC/ASM38561v1 2013-08-26 2013-08-26 2013-08-282.952%
82anoCar2Anolis
carolinensis
Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2011-04-193.552%
83xenTro7Xenopus
tropicalis
X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) US DOE Joint Genome Institute (JGI-PGF) 2013-06-21 2013-06-14 2013-08-283.153%
84latCha1Latimeria
chalumnae
Coelacanth Aug. 2011 (Broad/latCha1) Broad LatCha1 (GCA_000225785.1) 2012-01-11 2012-01-12 2013-07-162.749%
85tetNig2Tetraodon
nigroviridis
Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 2009-09-021.712%
86fr3Takifugu
rubripes
Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 2013-08-201.703%
87takFla1Takifugu flavidusTawny puffer fish 30-May-2013 (GCA_000400755.1) IOCAS/version 1 of Takifugu flavidus genome 2013-08-28 2013-08-28 2013-08-311.062%
88oreNil2Oreochromis
niloticus
Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) 2012-04-10 2012-04-11 2013-08-281.832%
89neoBri1Neolamprologus brichardiPrincess of Burundi 31-May-2011 (GCA_000239395.1) Broad Institute of MIT and Harvard/NeoBri1.0 2013-08-28 2013-08-28 2013-09-031.218%
90hapBur1Haplochromis burtoniBurton's mouthbreeder 12-Oct-2011 (GCA_000239415.1) Broad Institute of MIT and Harvard/AstBur1.0 2013-08-28 2013-08-28 2013-09-031.221%
91mayZeb1Maylandia zebraa cichlid fish 08-Mar-2012 (GCA_000238955.2) Broad Institute/MetZeb1.1 2013-08-28 2013-08-28 2013-09-031.243%
92punNye1Pundamilia nyerereia cichlid fish 12-Oct-2011 (GCA_000239375.1) Broad Institute of MIT and Harvard/PunNye1.0 2013-08-28 2013-08-28 2013-09-031.219%
93oryLat2Oryzias
latipes
Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2009-09-021.849%
94xipMac1Xiphophorus maculatussouthern platyfish 02-Jan-2012 (GCA_000241075.1) Washington University School of Medicine/Xiphophorus_maculatus-4.4.2 2013-07-01 2013-07-01 2013-08-281.842%
95gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 2009-09-021.916%
96gadMor1Gadus
morhua
Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) Genofisk GadMor_May2010 (GCA_000231765.1) 2011-12-29 2012-01-04 2013-09-011.551%
97danRer7Danio
rerio
Zebrafish Jul. 2010 (Zv9/danRer7) Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) 2010-12-03 2013-06-21 2010-12-182.790%
98astMex1Astyanax mexicanusMexican tetra (cavefish) 23-Apr-2013 (GCA_000372685.1) Aquatic Genome Models/Astyanax_mexicanus-1.0.2 2013-08-28 2013-08-28 2013-09-031.269%
99lepOcu1Lepisosteus oculatusSpotted Gar 02-Dec-2011 (GCA_000242695.1) Broad Institute of MIT and Harvard/LepOcu1 2013-08-28 2013-08-28 2013-09-021.522%
100petMar2Petromyzon
marinus
Lamprey Sep. 2010 (WUGSC 7.0/petMar2) GSC Washington University School of Medicine 2012-10-12 2012-10-12 2012-10-171.046%