Hg19 conservation alignment

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see also

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

  UCSC
db name
Scientific
name
Common
name
assembly
date
source
version
Repeat
Masker
Window
Masker
chain
on hg19
% of hg19
matched
(chainLink table)
01hg19Homo
sapiens
Human GRCh37 GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-04-24 N/AN/AN/A
02panTro2Pan
troglodytes
Chimp Mar. 2006 Washington University Build 2 Version 1 2006-03-24 N/A2009-03-2094.846%
03gorGor1Gorilla
gorilla
gorilla
Gorilla Oct. 2008 Sanger Institute Oct 2008 (NCBI project 31265, CABD01000000) 2008-11-03 N/A2009-03-2259.484%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 WUSTL 3.0 2007-09-15 N/A2009-05-1491.350%
05rheMac2Macaca
mulatta
Rhesus Jan. 2006 Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2006-01-30 N/A2009-05-1482.744%
06papHam1Papio
hamadryas
Baboon Nov. 2008 Baylor BCM HGSC Pham_1.0 2009-05-13 N/A2009-05-2082.810%
07calJac1Callithrix
jacchus
Marmoset June 2007 WUSTL 2.0.2 2007-08-23 N/A2009-05-1470.860%
08tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2008-10-15 N/A2009-05-1547.830%
09micMur1Microcebus
murinus
Mouse lemur Jul. 2007 Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2008-08-03 N/A2009-05-2246.519%
10otoGar1Otolemur
garnettii
Bushbaby Dec. 2006 Broad version 1 (NCBI project 16955, AAQR00000000) 2006-12-20 N/A2009-05-1543.644%
11equCab2Equus
caballus
Horse Sep. 2007 Broad Institute EquCab2 2008-04-03 N/A2009-06-0457.050%
12tupBel1Tupaia
belangeri
Tree shrew Dec. 2006 Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2008-10-15 N/A2009-06-0136.156%
13turTru1Tursiops
truncatus
Dolphin Feb. 2008 Broad Institute turTru1 (NCBI project 20367, ABRN01000000) 2008-10-15 N/A2009-06-0448.398%
14speTri1Spermophilus
tridecemlineatus
Squirrel Feb. 2008 Broad Institute speTri1 2008-08-03 N/A2009-06-0435.713%
15vicPac1Vicugna
pacos
Alpaca Jul. 2008 Broad Institute vicPac1 2008-10-17 N/A2009-06-0439.399%
16choHof1Choloepus
hoffmanni
Sloth Jul. 2008 Broad Institute choHof1 2008-10-16 N/A2009-06-0534.377%
17pteVam1Pteropus
vampyrus
Megabat Jul. 2008 Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2008-10-15 N/A2009-06-0445.414%
18loxAfr3Loxodonta
africana
Elephant Jul. 2009 Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-07-15 N/A2009-07-2246.636%
19felCat3Felis
catus
Cat Mar. 2006 Broad Release 3 2006-10-16 N/A2009-06-0435.713%
20canFam2Canis
lupus
familiaris
Dog May 2005 Broad Institute v. 2.0 2005-07-10 N/A2009-05-1452.879%
21dasNov2Dasypus
novemcinctus
Armadillo Jul. 2008 Broad Institute dasNov2 (NCBI project 12594, AAGV020000000) 2008-10-07 N/A2009-05-2733.543%
22oryCun2Oryctolagus
cuniculus
Rabbit Apr. 2009 Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-08-11 N/A2009-08-1244.317%
23myoLuc1Myotis
lucifugus
Microbat Mar. 2006 Broad Institute myoLuc1 2008-07-29 N/A2009-06-0433.174%
24bosTau4Bos
taurus
Cow Oct. 2007 Baylor Release 4.0 2008-03-10 N/A2009-06-0446.506%
25cavPor3Cavia
porcellus
Guinea Pig Feb. 2008 Broad Institute cavPor3 2008-04-05 2008-04-082009-06-0643.680%
26proCap1Procavia
capensis
Rock hyrax Jul. 2008 Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) 2008-10-16 N/A2009-05-2630.864%
27dipOrd1Dipodomys
ordii
Kangaroo rat Jul. 2008 Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) 2008-10-15 N/A2009-05-2927.161%
28ochPri2Ochotona
princeps
Pika Jul. 2008 Broad Institute ochPri2 2008-07-28 N/A2009-05-3027.768%
29eriEur1Erinaceus
europaeus
Hedgehog June 2006 Broad Institute eriEur1 (Draft_v1, NCBI project 12575) 2008-10-21 2008-10-212009-05-3019.362%
30echTel1Echinops
telfairi
Tenrec July 2005 Broad July 2005 2005-08-04 N/A2009-05-2823.120%
31mm9Mus
musculus
Mouse July 2007 NCBI Build 37 2007-07-20 N/A2009-05-1335.299%
32rn4Rattus
norvegicus
Rat Nov. 2004 Baylor HGSC v. 3.4 2006-03-16 N/A2009-05-1332.879%
33sorAra1Sorex
araneus
Shrew June 2006 Broad Institute sorAra1 (Draft_v2) 2008-10-20 2008-10-212009-05-2919.760%
34macEug1Macropus
eugenii
Wallaby Nov. 2007 Baylor Release 1.0 N/A 2008-12-262009-05-316.011%
35monDom5Monodelphis
domestica
Opossum Oct. 2006 Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-07-06 2008-12-022009-05-2914.358%
36ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 WUSTL version 5.0.1 2007-07-20 N/A2009-05-277.627%
37galGal3Gallus
gallus
Chicken May 2006 Chicken Genome Sequencing Consortium May 2006 release 2006-05-18 2007-01-022009-05-143.591%
38taeGut1Taeniopygia
guttata
Zebra finch Jul. 2008 Washington University taeGut1 2009-02-04 2008-08-052009-05-263.496%
39anoCar1Anolis
carolinensis
Lizard Feb. 2007 Broad Institute AnoCar (1.0) 2007-03-07 2007-02-162009-05-303.591%
40xenTro2Xenopus
tropicalis
X. tropicalis Aug. 2005 JGI v4.1 2006-04-17 2007-02-202009-05-273.176%
41gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2006-10-17 2006-12-052009-05-141.916%
42fr2Takifugu
rubripes
Fugu Oct. 2004 JGI V4.0 2007-03-07 2007-01-222009-05-201.702%
43danRer6Danio
rerio
Zebrafish Dec. 2008 Wellcome Trust Sanger Institute, Zv8 assembly (CAAK00000000.5) 2009-06-29 N/A2009-07-103.051%
44tetNig2Tetraodon
nigroviridis
Tetraodon Mar. 2007 Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) N/A 2009-08-072009-08-101.712%
45oryLat2Oryzias
latipes
Medaka Oct. 2005 NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2008-08-12 2008-08-142009-05-221.849%
46petMar1Petromyzon
marinus
Lamprey Mar. 2007 WUSTL v.3.0 (March 2007) N/A 2008-01-282009-05-141.082%