Hg38 100-way conservation alignment

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on hg38
% of hg38
matched
(chainLink table)
01hg38Homo
sapiens
Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) 2014-01-10 2013-12-25 2015-01-14N/A
02panTro4Pan
troglodytes
Chimp Feb. 2011 (CSAC 2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2014-05-2793.112%
03gorGor3Gorilla
gorilla
gorilla
Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 2013-06-21 2014-12-1588.005%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2014-09-0289.187%
05nomLeu3Nomascus
leucogenys
Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2014-12-1286.379%
06rheMac3Macaca
mulatta
Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2015-04-0980.828%
07macFas5Macaca
fascicularis
Crab-eating macaque Jun 2013 (Macaca_fascicularis_5.0/macFas5) Washington University (WashU) GCA_000364345.1 2013-06-30 2013-06-30 2014-12-1485.675%
08papAnu2Papio
anubis
Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) Baylor College of Medicine 2012-07-22 2012-08-07 2014-12-1384.179%
09chlSab2Chlorocebus
sabaeus
Green monkey Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) Vervet Genomics Consortium GCA_000409795.2 2014-04-10 2014-04-10 2014-07-1184.393%
10calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2014-12-1371.709%
11saiBol1Saimiri
boliviensis
Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2014-12-1370.565%
12otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2015-02-2353.196%
13tupChi1Tupaia
chinensis
Chinese tree shrew Jan 2013 (TupChi_1.0/tupChi1) BGI GCA_000334495.1 2013-07-05 2013-07-05 2015-02-1945.256%
14speTri2Spermophilus
tridecemlineatus
Squirrel Nov. 2011 (Broad/speTri2) Broad Institute (GCA_000236235.1) 2012-03-14 2012-03-15 2015-04-2948.283%
15jacJac1Jaculus
jaculus
Lesser Egyptian jerboa May 2012 (JacJac1.0/jacJac1) Broad Institute GCA_000280705.1 2013-07-15 2013-07-15 2015-02-1934.153%
16micOch1Microtus
ochrogaster
Prairie vole Oct 2012 (MicOch1.0/micOch1) Broad Institute GCA_000317375.1 2013-08-26 2013-08-26 2015-02-1431.489%
17criGri1Cricetulus
griseus
Chinese hamster Jul. 2013 (C_griseus_v1.0/criGri1) Beijing Genomics Institution-Shenzhen 2014-04-04 2013-08-28 2015-02-2033.169%
18mesAur1Mesocricetus
auratus
Golden hamster Mar 2013 (MesAur1.0/mesAur1) Broad Institute GCA_000349665.1 2013-08-28 2013-08-28 2015-02-1930.803%
19mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2015-04-0931.653%
20rn6Rattus
norvegicus
Rat Jul. 2014 (RGSC 6.0/rn6) RGSC Rnor_6.0 2014-07-08 2014-07-09 2015-02-1431.077%
21hetGla2Heterocephalus
glaber
Naked mole-rat Jan. 2012 (Broad HetGla_female_1.0/hetGla2) Broad Institute HetGla_female_1.0 (NCBI project 72441, GCA_000247695.1, WGS AHKG01) 2012-04-14 2012-04-14 2015-04-2946.248%
22cavPor3Cavia
porcellus
Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2015-04-2842.371%
23chiLan1Chinchilla
lanigera
Chinchilla May 2012  (ChiLan1.0/chiLan1) Broad Institute 2012-07-28 2012-07-27 2015-04-2845.665%
24octDeg1Octodon
degus
Brush-tailed rat Apr 2012 (OctDeg1.0/octDeg1) Broad Institute GCA_000260255.1 2013-07-07 2013-07-07 2015-04-2440.238%
25oryCun2Oryctolagus
cuniculus
Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 2013-06-21 2015-04-2842.911%
26ochPri3Ochotona
princeps
Pika May 2012 (OchPri3.0/ochPri3) Broad Institute 2013-06-20 2013-06-18 2015-04-2833.618%
27susScr3Sus
scrofa
Pig Aug. 2011 (SGSC Sscrofa10.2/susScr3) SGSC Sscrofa10.2 (NCBI project 13421, GCA_000003025.4, WGS AEMK01) 2012-04-12 2012-04-13 2015-04-2944.676%
28vicPac2Vicugna
pacos
Alpaca Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) Broad Institute 2013-06-10 2013-06-10 2015-04-2948.909%
29camFer1Camelus
ferus
Bactrian camel Dec 2011 (CB1/camFer1) The Bactrian Camels Genome Sequencing and Analysis Consortium GCA_000311805.1 2013-07-12 2013-07-12 2015-04-2449.095%
30turTru2Tursiops
truncatus
Dolphin Oct. 2011 (Baylor Ttru_1.4/turTru2) Baylor College of Medicine Ttru_1.4 (NCBI project 20365, GCA_000151865.2, WGS ABRN02) 2012-04-14 2012-04-14 2015-04-2949.728%
31orcOrc1Orcinus
orca
Killer whale Jan 2013 (Oorc_1.1/orcOrc1) Marine mammals GCA_000331955.1 2013-08-20 2013-08-20 2015-04-2950.709%
32panHod1Pantholops
hodgsonii
Tibetan antelope May 2013 (PHO1.0/panHod1) BGI GCA_000400835.1 2013-07-15 2013-07-15 2015-04-2845.619%
33bosTau8Bos
taurus
Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) University of Maryland Bos_taurus_UMD_3.1.1 2014-09-11 2014-09-12 2014-10-1645.975%
34oviAri3Ovis
aries
Sheep Aug. 2012 (ISGC Oar_v3.1/oviAri3) International Sheep Genome Consortium 2013-06-10 2013-06-09 2015-04-2745.352%
35capHir1Capra
hircus
Domestic goat May 2012 (CHIR_1.0/capHir1) International Goat Genome Consortium GCA_000317765.1 2013-07-15 2013-07-15 2015-04-2845.257%
36equCab2Equus
caballus
Horse Sep. 2007 (Broad/equCab2) Broad Institute EquCab2 2009-08-14 2013-06-21 2015-02-2355.459%
37cerSim1Ceratotherium
simum
White rhinoceros May 2012 (CerSimSim1.0/cerSim1) Broad Institute 2012-08-28 2012-08-28 2015-02-2356.633%
38felCat8Felis
catus
Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) International Cat Genome Sequencing Consortium 2014-11-22 2014-11-22 2015-04-2951.684%
39canFam3Canis
lupus
familiaris
Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2015-04-1050.395%
40musFur1Mustela
putorius
furo
Ferret  Apr. 2011 (MusPutFur1.0/musFur1) Ferret Genome Sequencing Consortium 2013-03-05 2013-03-05 2015-04-2949.631%
41ailMel1Ailuropoda
melanoleuca
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 2013-06-21 2015-02-1248.226%
42odoRosDiv1Odobenus
rosmarus
divergens
Pacific walrus Jan 2013 (Oros_1.0/odoRosDiv1) Marine mammals GCA_000321225.1 2013-07-12 2013-07-12 2015-04-2952.193%
43lepWed1Leptonychotes
weddellii
Weddell seal Mar 2013 (LepWed1.0/lepWed1) Broad Institute GCA_000349705.1 2013-07-11 2013-07-11 2015-04-2951.073%
44pteAle1Pteropus
alecto
Black flying-fox Aug 2012 (ASM32557v1/pteAle1) BGI GCA_000325575.1 2013-08-28 2013-08-28 2015-04-2948.281%
45pteVam1Pteropus
vampyrus
Megabat Jul. 2008 (Broad/pteVam1) Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) 2009-09-02 2012-05-02 2015-04-2943.924%
46eptFus1Eptesicus
fuscus
Big brown bat Jul 2012 (EptFus1.0/eptFus1) Broad Institute GCA_000308155.1 2013-08-28 2013-08-28 2015-04-2439.123%
47myoDav1Myotis
davidii
David's myotis (bat) Aug 2012 (ASM32734v1/myoDav1) BGI GCA_000327345.1 2013-08-28 2013-08-28 2015-04-2838.713%
48myoLuc2Myotis
lucifugus
Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) Broad Institute (NCBI Project ID: 16951, Accession: GCA_000147115.1) 2010-11-03 2013-06-21 2015-04-2838.591%
49eriEur2Erinaceus
europaeus
Hedgehog May 2012 (EriEur2.0/eriEur2) Broad Institute EriEur2.0 2013-06-12 2013-06-07 2015-02-1925.488%
50sorAra2Sorex
araneus
Shrew Aug. 2008 (Broad/sorAra2) Broad Institute SorAra2.0 2013-05-29 2013-05-29 2015-02-2026.905%
51conCri1Condylura
cristata
Star-nosed mole Mar 2012 (ConCri1.0/conCri1) Broad Institute GCA_000260355.1 2013-07-09 2013-07-09 2015-04-2935.911%
52loxAfr3Loxodonta
africana
Elephant Jul. 2009 (Broad/loxAfr3) Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) 2009-09-02 2013-06-21 2015-04-2945.214%
53eleEdw1Elephantulus
edwardii
Cape elephant shrew Aug 2012 (EleEdw1.0/eleEdw1) Broad Institute GCA_000299155.1 2013-07-07 2013-07-07 2015-02-1926.839%
54triMan1Trichechus
manatus
latirostris
Manatee Oct. 2011 (Broad v1.0/triMan1) Broad Institute of MIT and Harvard TriManLat1.0 (GCA_000243295.1) 2012-03-28 2012-03-29 2015-04-2945.346%
55chrAsi1Chrysochloris
asiatica
Cape golden mole Aug 2012 (ChrAsi1.0/chrAsi1) Broad Institute GCA_000296735.1 2013-07-07 2013-07-07 2015-02-2033.314%
56echTel2Echinops
telfairi
Tenrec Nov. 2012 (Broad/echTel2) Broad/EchTel2.0 2013-05-30 2013-05-30 2015-04-2929.310%
57oryAfe1Orycteropus
afer
afer
Aardvark May 2012 (OryAfe1.0/oryAfe1) Broad Institute GCA_000298275.1 2013-07-07 2013-07-07 2015-04-2340.563%
58dasNov3Dasypus
novemcinctus
Armadillo Dec. 2011 (Baylor/dasNov3) Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 2012-04-12 2012-04-13 2015-04-2945.349%
59monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2014-05-2914.370%
60sarHar1Sarcophilus
harrisii
Tasmanian devil Feb. 2011 (WTSI Devil_ref v7.0/sarHar1) Wellcome Trust Sanger Institute Devil_ref v7.0 (GCA_000189315.1) 2012-02-02 2012-02-08 2015-02-1412.754%
61macEug2Macropus
eugenii
Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) TWGS (NCBI Project ID: 12586, Accession: GCA_000004035.1) 2010-11-05 2011-12-02 2015-02-196.378%
62ornAna1Ornithorhynchus
anatinus
Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) WUSTL version 5.0.1 2009-08-15 2013-06-22 2015-02-137.769%
63colLiv1Columba
livia
Rock pigeon Feb 2013 (Cliv_1.0/colLiv1) BGI GCA_000337935.1 2013-06-27 2013-06-27 2015-02-134.712%
64falChe1Falco
cherrug
Saker falcon Feb 2013 (F_cherrug_v1.0/falChe1) BGI GCA_000337975.1 2013-06-27 2013-06-27 2015-02-134.828%
65falPer1Falco
peregrinus
Peregrine falcon Feb 2013 (F_peregrinus_v1.0/falPer1) BGI GCA_000337955.1 2013-06-28 2013-06-28 2015-02-134.926%
66ficAlb2Ficedula
albicollis
Collared flycatcher Jun 2013 (FicAlb1.5/ficAlb2) Uppsala University GCA_000247815.2 2013-06-29 2013-06-29 2015-02-184.822%
67zonAlb1Zonotrichia
albicollis
White-throated sparrow Apr 2013 (ASM38545v1/zonAlb1) White-throated sparrow consortium GCA_000385455.1 2013-06-26 2013-06-26 2015-02-184.494%
68geoFor1Geospiza
fortis
Medium ground finch Apr. 2012 (GeoFor_1.0/geoFor1) Beijing Genomics Institute 2012-07-26 2012-07-26 2015-02-194.445%
69taeGut2Taeniopygia
guttata
Zebra finch Feb. 2013 (WashU taeGut324/taeGut2) Washington University School of Medicine 2013-06-05 2013-06-05 2015-02-195.893%
70pseHum1Pseudopodoces
humilis
Tibetan ground jay Jan 2013 (PseHum1.0/pseHum1) Beijing Genomics Institute (BGI)-Shenzhen GCA_000331425.1 2013-06-27 2013-06-27 2015-02-195.146%
71melUnd1Melopsittacus
undulatus
Budgerigar Sep. 2011 (WUSTL v6.3/melUnd1) WUSTL Melopsittacus undulatus Budgerigar Version 6.3 (GCA_000238935.1) 2012-03-27 2012-03-28 2015-02-194.474%
72amaVit1Amazona
vittata
Parrot Jan. 2013 (AV1/amaVit1) Puerto Rican Parrot Genome Project AV1 2013-03-27 2013-03-27 2015-02-134.186%
73araMac1Ara
macao
Scarlet Macaw Jun 2013 (SMACv1.1/araMac1) Texas A&M University GCA_000400695.1 2013-06-28 2013-06-28 2015-02-173.787%
74anaPla1Anas
platyrhynchos
Mallard duck Apr 2013 (BGI_duck_1.0/anaPla1) State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing GCA_000355885.1 2013-06-27 2013-06-27 2015-02-134.268%
75galGal4Gallus
gallus
Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) ICGSC Gallus_gallus-4.0 (GCA_000002315.2) 2012-01-04 2012-01-04 2015-02-134.696%
76melGal1Meleagris
gallopavo
Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 2013-06-21 2015-02-134.328%
77allMis1Alligator
mississippiensis
American alligator Aug. 2012 (allMis0.2/allMis1) International Crocodilian Genomes Working Group 2013-06-07 2012-08-28 2015-02-147.561%
78cheMyd1Chelonia
mydas
Green seaturtle Mar 2013 (CheMyd_1.0/cheMyd1) BGI GCA_000344595.1 2013-08-26 2013-08-26 2015-02-066.296%
79chrPic2Chrysemys
picta
bellii
Painted turtle Mar. 2014 (v3.0.3/chrPic2) International Painted Turtle Genome Sequencing Consortium 2014-04-29 2014-04-10 2015-02-066.708%
80pelSin1Pelodiscus
sinensis
Chinese softshell turtle Oct 2011 (PelSin_1.0/pelSin1) Soft-shell Turtle Genome Consortium GCA_000230535.1 2013-07-01 2013-07-01 2015-02-145.716%
81apaSpi1Apalone
spinifera
Spiny softshell turtle May 2013 (ASM38561v1/apaSpi1) WUGSC GCA_000385615.1 2013-08-26 2013-08-26 2015-02-144.611%
82anoCar2Anolis
carolinensis
Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2015-02-063.593%
83xenTro7Xenopus
tropicalis
X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) US DOE Joint Genome Institute (JGI-PGF) 2013-06-21 2013-06-14 2015-02-193.811%
84latCha1Latimeria
chalumnae
Coelacanth Aug. 2011 (Broad/latCha1) Broad LatCha1 (GCA_000225785.1) 2012-01-11 2012-01-12 2015-02-202.873%
85tetNig2Tetraodon
nigroviridis
Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) 2010-06-07 2009-09-02 2015-02-181.743%
86fr3Takifugu
rubripes
Fugu Oct. 2011 (FUGU5/fr3) Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) 2011-11-16 2011-11-17 2015-02-181.784%
87takFla1Takifugu
flavidus
Yellowbelly pufferfish May 2013 (version 1 of Takifugu flavidus genome/takFla1) IOCAS GCA_000400755.1 2013-08-28 2013-08-28 2015-02-181.548%
88oreNil2Oreochromis
niloticus
Nile tilapia Jan. 2011 (Broad oreNil1.1/oreNil2) Broad Institute of MIT and Harvard Orenil1.1 (GCA_000188235.1) 2012-04-10 2012-04-11 2015-02-181.868%
89neoBri1Neolamprologus
brichardi
Princess of Burundi May 2011 (NeoBri1.0/neoBri1) Broad Institute of MIT and Harvard GCA_000239395.1 2013-08-28 2013-08-28 2015-02-181.767%
90hapBur1Haplochromis
burtoni
Burton's mouthbreeder Oct 2011 (AstBur1.0/hapBur1) Broad Institute of MIT and Harvard GCA_000239415.1 2013-08-28 2013-08-28 2015-02-181.783%
91mayZeb1Maylandia
zebra
Zebra Mbuna Mar 2012 (MetZeb1.1/mayZeb1) Broad Institute GCA_000238955.2 2013-08-28 2013-08-28 2015-02-071.805%
92punNye1Pundamilia
nyererei
Pundamilia nyererei Oct 2011 (PunNye1.0/punNye1) Broad Institute of MIT and Harvard GCA_000239375.1 2013-08-28 2013-08-28 2015-02-061.787%
93oryLat2Oryzias
latipes
Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) 2009-08-15 2009-08-15 2015-02-062.002%
94xipMac1Xiphophorus
maculatus
Southern platyfish Jan 2012 (Xiphophorus_maculatus-4.4.2/xipMac1) Washington University School of Medicine GCA_000241075.1 2013-07-01 2013-07-01 2015-02-061.898%
95gasAcu1Gasterosteus
aculeatus
Stickleback Feb. 2006 (Broad/gasAcu1) Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) 2009-08-15 2009-08-15 2015-02-182.080%
96gadMor1Gadus
morhua
Atlantic cod May 2010 (Genofisk GadMor_May2010/gadMor1) Genofisk GadMor_May2010 (GCA_000231765.1) 2011-12-29 2012-01-04 2015-02-181.660%
97danRer10Danio
rerio
Zebrafish Sep. 2014 (GRCz10/danRer10) Genome Reference Consortium Zebrafish Build 10 2015-01-26 2015-01-22 2015-02-083.357%
98astMex1Astyanax
mexicanus
Mexican tetra (cavefish) Apr 2013 (Astyanax_mexicanus-1.0.2/astMex1) Aquatic Genome Models GCA_000372685.1 2013-08-28 2013-08-28 2015-02-182.225%
99lepOcu1Lepisosteus
oculatus
Spotted gar Dec 2011 (LepOcu1/lepOcu1) Broad Institute of MIT and Harvard GCA_000242695.1 2013-08-28 2013-08-28 2015-02-192.511%
100petMar2Petromyzon
marinus
Lamprey Sep. 2010 (WUGSC 7.0/petMar2) GSC Washington University School of Medicine 2012-10-12 2012-10-12 2015-02-061.265%