Hg38 27-way Genome size statistics

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see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

genome size statistics
order
count
ftp src 		ucsc
db name/
genome-preview 		chrom
count 		total
size 		non-N
bases 		N base
count 		% masked common name
src info 		coverage
X 		N50
chrom.sizes 		alignment type % of hg38
matched
(chainLink table) 		chain
minScore 		chain
linearGap
01 hg38 455 3,209,286,105 3,049,315,783 159,970,322 % 52.10 Human 20 145138636 N/A N/A 3000 medium
02 panTro5 44,449 3,231,170,666 3,132,619,616 98,551,050 % 52.72 Chimp 6 135926727 SyntenicNet 95.355% 5000 medium
03 panPan2 10,274 3,286,643,896 2,725,890,006 560,753,890 % 50.59 Bonobo 26 144709823 SyntenicNet 92.685% 3000 medium
04 gorGor5 15,998 3,080,431,298 3,080,431,298 0 % 50.02 Gorilla 71 10016017 SyntenicNet 94.691% 3000 medium
05 ponAbe2 55 3,446,771,396 3,093,543,172 353,228,224 % 50.89 Orangutan 6 135191526 SyntenicNet 89.187% 5000 medium
06 nomLeu3 17,492 2,962,077,449 2,756,609,047 205,468,402 % 51.14 Gibbon 5.6 117381234 SyntenicNet 86.379% 3000 medium
07 rheMac8 284,728 3,236,224,332 3,142,091,753 94,132,579 % 54.33 Rhesus 47.4 144306982 SyntenicNet 84.506% 5000 medium
08 macFas5 7,601 2,946,843,737 2,803,866,385 142,977,352 % 50.11 Crab-eating macaque 68 152835861 SyntenicNet 85.675% 3000 medium
09 macNem1 9,734 2,948,720,071 2,838,503,040 110,217,031 % 50.07 Pig-tailed macaque 113.1 15219753 SyntenicNet 83.524% 5000 medium
10 cerAty1 11,434 2,848,262,899 2,787,289,385 60,973,514 % 49.92 Sooty mangabey 192 12849131 SyntenicNet 83.847% 5000 medium
11 papAnu3 63,251 2,948,397,226 2,893,266,807 55,130,419 % 52.40 Baboon 85 139646187 SyntenicNet 86.336% 3000 medium
12 chlSab2 2,004 2,789,656,328 2,752,000,999 37,655,329 % 48.77 Green monkey 95 101219884 SyntenicNet 84.393% 5000 medium
13 manLeu1 12,822 3,062,009,387 2,721,424,085 340,585,302 % 49.47 Drill 117.2 3186748 SyntenicNet 82.498% 5000 medium
14 nasLar1 319,550 3,011,982,740 2,397,109,760 614,872,980 % 46.33 Proboscis monkey 290 137426304 RecipBest 74.541% 3000 medium
15 colAng1 13,124 2,970,124,662 2,679,973,136 290,151,526 % 49.72 Angolan colobus 86.8 7840981 SyntenicNet 81.641% 5000 medium
16 rhiRox1 135,512 2,899,552,139 2,856,044,136 43,508,003 % 51.07 Golden snub-nosed monkey 53.7 1549224 SyntenicNet 85.109% 3000 medium
17 rhiBie1 105,031 2,977,074,741 2,801,879,982 175,194,759 % 50.27 Black snub-nosed monkey 76.6 2225337 SyntenicNet 83.065% 5000 medium
18 calJac3 14,205 2,914,958,544 2,752,505,800 162,452,744 % 47.71 Marmoset 6 132174527 RecipBest 71.709% 3000 medium
19 saiBol1 2,685 2,608,572,064 2,477,131,095 131,440,969 % 46.69 Squirrel monkey 80 18744880 RecipBest 70.565% 3000 medium
20 cebCap1 7,156 2,717,703,182 2,610,499,094 107,204,088 % 47.29 White-faced sapajou 81 5274112 RecipBest 70.683% 5000 medium
21 aotNan1 28,922 2,861,684,817 2,714,439,489 147,245,328 % 47.38 Ma's night monkey 132.4 8268663 RecipBest 70.629% 5000 medium
22 tarSyr2 337,189 3,453,864,774 3,405,755,564 48,109,210 % 47.85 Tarsier 48 401181 SyntenicNet 56.022% 3000 medium
23 micMur3 7,678 2,487,409,138 2,386,321,897 101,087,241 % 41.27 Mouse lemur 221.6 108171978 RecipBest 29.728% 3000 medium
24 proCoq1 22,539 2,798,152,141 2,083,764,525 714,387,616 % 39.39 Coquerel's sifaka 104.7 5604909 RecipBest 32.467% 5000 medium
25 eulMac1 26,772 2,119,875,225 2,101,039,320 18,835,905 % 39.43 Black lemur 21 405987 RecipBest 33.708% 5000 medium
26 eulFla1 38,366 2,115,567,618 2,094,103,399 21,464,219 % 39.60 Sclater's lemur 52 413352 RecipBest 33.326% 5000 medium
27 otoGar3 7,793 2,519,724,550 2,359,530,453 160,194,097 % 39.51 Bushbaby 137 13852661 SyntenicNet 53.196% 3000 medium
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