Hg38 30-way conservation alignment

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on hg38
% of hg38
matched
(chainLink table)
01hg38Homo
sapiens
Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) 2014-01-10 2013-12-25 2015-01-14N/A
02panTro5Pan
troglodytes
Chimp May 2016 (Pan_tro 3.0/panTro5) Chimpanzee Sequencing and Analysis Consortium 2016-08-02 2016-08-02 2016-08-0495.355%
03panPan2Pan
paniscus
Bonobo Aug. 2015 (MPI-EVA panpan1.1/panPan2) Max-Planck Institute for Evolutionary Anthropology 2016-05-04 2016-05-04 2016-05-2492.685%
04gorGor5Gorilla
gorilla
gorilla
Gorilla Mar. 2016 (GSMRT3/gorGor5) UNIVERSITY OF WASHINGTON 2016-06-22 2016-06-23 2016-06-2594.691%
05ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2014-09-0289.187%
06nomLeu3Nomascus
leucogenys
Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2014-12-1286.379%
07nasLar1Nasalis
larvatus
Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) Proboscis Monkey Functional Genome Consortium 2014-12-12 2014-12-12 2014-12-1574.541%
08rhiBie1Rhinopithecus
bieti
Black snub-nosed monkey Aug. 2016 (ASM169854v1/rhiBie1) Laboratory for conservation and utilization of Bio-resource 2017-03-01 2017-03-01 2017-03-2383.065%
09rhiRox1Rhinopithecus
roxellana
Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) Novogene 2015-02-20 2015-02-18 2015-02-2385.109%
10colAng1Colobus
angolensis
palliatus
Angolan colobus Mar. 2015 (Cang.pa_1.0/colAng1) Baylor College of Medicine 2016-06-16 2016-06-17 2017-02-2781.641%
11macFas5Macaca
fascicularis
Crab-eating macaque Jun. 2013 (Macaca_fascicularis_5.0/macFas5) Washington University (WashU) GCA_000364345.1 2013-06-30 2013-06-30 2014-12-1485.675%
12rheMac8Macaca
mulatta
Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) Baylor College of Medicine Genome Sequencing Center 2016-02-02 2016-02-02 2016-02-0884.506%
13papAnu3Papio
anubis
Baboon Feb. 2013 (Baylor Panu_2.0/papAnu3) Baylor College of Medicine 2017-06-21 2017-06-21 2017-06-2286.336%
14macNem1Macaca
nemestrina
Pig-tailed macaque Mar. 2015 (Mnem_1.0/macNem1) Baylor College of Medicine 2017-02-25 2017-02-25 2017-02-2783.524%
15cerAty1Cercocebus
atys
Sooty mangabey Mar. 2015 (Caty_1.0/cerAty1) Human Genome Sequencing Center - BCM 2017-09-22 2017-09-22 2017-09-2783.847%
16saiBol1Saimiri
boliviensis
Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2014-12-1370.565%
17chlSab2Chlorocebus
sabaeus
Green monkey Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) Vervet Genomics Consortium GCA_000409795.2 2014-04-10 2014-04-10 2014-07-1184.393%
18manLeu1Mandrillus
leucophaeus
Drill Mar. 2015 (Mleu.le_1.0/manLeu1) Baylor College of Medicine 2017-09-21 2017-09-21 2017-09-2582.498%
19aotNan1Aotus
nancymaae
Ma's night monkey Jun. 2017 (Anan_2.0/aotNan1) Baylor College of Medicine 2017-09-21 2017-09-22 2017-09-2570.629%
20calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2014-12-1371.709%
21cebCap1Cebus
capucinus
imitator
White-faced sapajou Apr. 2016 (Cebus_imitator-1.0/cebCap1) McDonnell Genome Institute - Washington University School of Medicine 2017-09-28 2017-09-28 2017-09-2870.683%
22eulFla1Eulemur
flavifrons
Sclater's lemur Aug. 2015 (Eflavifronsk33QCA/eulFla1) University of Chicago 2017-10-03 2017-10-03 2017-10-0333.326%
23eulMac1Eulemur
macaco
Black lemur Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1) University of Chicago 2017-10-03 2017-10-04 2017-10-0433.708%
24tarSyr2Tarsius
syrichta
Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) Washington University 2014-11-21 2014-11-22 2014-12-1256.022%
25proCoq1Propithecus
coquereli
Coquerel's sifaka Mar. 2015 (Pcoq_1.0/proCoq1) Baylor College of Medicine 2017-09-27 2017-09-28 2017-09-2832.467%
26micMur3Microcebus
murinus
Mouse lemur Feb. 2017 (Mmur_3.0/micMur3) Broad Institute 2017-03-02 2017-03-03 2017-03-0429.728%
27otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2015-02-2353.196%
28canFam3Canis
lupus
familiaris
Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2015-04-1050.395%
29dasNov3Dasypus
novemcinctus
Armadillo Dec. 2011 (Baylor/dasNov3) Baylor College of Medicine Dasnov3.0 (GCA_000208655.2) 2012-04-12 2012-04-13 2015-04-2945.349%
30mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2015-04-0931.653%