PetMar2 conservation alignment
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see also
- Lamprey 7-way PetMar2 Genome size statistics
- Lamprey 7-way PetMar2 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date | source version |
Repeat Masker |
Window Masker |
chain on petMar2 |
% of petMar2 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | petMar2 | Petromyzon marinus | Lamprey | Sep. 2010 (WUGSC 7.0/petMar2) | GSC Washington University School of Medicine | 2012-10-12 | 2012-10-12 | N/A | N/A |
| 02 | galGal4 | Gallus gallus | Chicken | Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) | ICGSC Gallus_gallus-4.0 (GCA_000002315.2) | 2012-01-04 | 2012-01-04 | 2012-10-29 | 2.869% |
| 03 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2012-10-24 | 4.926% |
| 04 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2012-10-24 | 2.618% |
| 05 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | 2012-04-19 | 2012-10-17 | 3.324% |
| 06 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2012-10-22 | 3.232% |
| 07 | braFlo2 | Branchiostoma floridae | Lancelet | Apr. 2008 (JGI v2.0/braFlo2) | US DOE Joint Genome Institute v2.0 | 2012-10-18 | 2012-10-18 | 2012-10-20 | 3.020% |
