Rn6 20-way conservation alignment

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see also

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This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on rn6
% of rn6
matched
(chainLink table)
01rn6Rattus
norvegicus
Rat Jul. 2014 (RGSC 6.0/rn6) RGSC Rnor_6.0 2014-07-08 2014-07-09 N/AN/A
02mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2016-04-0871.015%
03micOch1Microtus
ochrogaster
Prairie vole Oct 2012 (MicOch1.0/micOch1) Broad Institute GCA_000317375.1 2013-08-26 2013-08-26 2017-01-1857.205%
04cavPor3Cavia
porcellus
Guinea pig Feb. 2008 (Broad/cavPor3) Broad Institute cavPor3 2009-08-15 2009-08-15 2017-01-1327.834%
05hg38Homo
sapiens
Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) 2014-01-10 2013-12-25 2015-02-1734.899%
06panTro5Pan
troglodytes
Chimp May 2016 (Pan_tro 3.0/panTro5) Chimpanzee Sequencing and Analysis Consortium 2016-08-02 2016-08-02 2017-01-1340.816%
07tarSyr2Tarsius
syrichta
Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) Washington University 2014-11-21 2014-11-22 2017-01-1838.509%
08rheMac8Macaca
mulatta
Rhesus Nov. 2015 (BCM Mmul_8.0.1/rheMac8) Baylor College of Medicine Genome Sequencing Center 2016-02-02 2016-02-02 2017-01-1440.165%
09canFam3Canis
lupus
familiaris
Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2017-01-1328.540%
10oryCun2Oryctolagus
cuniculus
Rabbit Apr. 2009 (Broad/oryCun2) Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) 2009-09-02 2013-06-21 2017-01-1724.654%
11felCat8Felis
catus
Cat Nov. 2014 (ICGSC Felis_catus_8.0/felCat8) International Cat Genome Sequencing Consortium 2014-11-22 2014-11-22 2017-01-1729.520%
12ailMel1Ailuropoda
melanoleuca
Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) BGI-Shenzhen AilMel 1.0 Dec. 2009 2010-02-03 2013-06-21 2017-01-1630.404%
13bosTau8Bos
taurus
Cow Jun. 2014 (Bos_taurus_UMD_3.1.1/bosTau8) University of Maryland Bos_taurus_UMD_3.1.1 2014-09-11 2014-09-12 2017-01-1625.902%
14monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2017-01-139.652%
15ornAna2Ornithorhynchus
anatinus
Platypus Feb. 2007 (ASM227v2/ornAna2) WUGSC ASM227v2 2015-03-10 2015-03-11 2017-01-186.389%
16xenTro7Xenopus
tropicalis
X. tropicalis Sep. 2012 (JGI 7.0/xenTro7) US DOE Joint Genome Institute (JGI-PGF) 2013-06-21 2013-06-14 2017-01-124.104%
17galGal5Gallus
gallus
Chicken Dec 2015 (Gallus_gallus-5.0/galGal5) International Chicken Genome Consortium 2016-04-14 2016-04-14 2016-05-033.983%
18melGal5Meleagris
gallopavo
Turkey Nov. 2014 (Turkey_5.0/melGal5) Turkey Genome Consortium 2017-01-12 2017-01-13 2017-01-172.440%
19calMil1Callorhinchus
milii
Elephant shark Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) Institute of Molecular and Cell Biology, Singapore 2014-04-01 2014-04-01 2017-01-181.664%
20danRer10Danio
rerio
Zebrafish Sep. 2014 (GRCz10/danRer10) Genome Reference Consortium Zebrafish Build 10 2015-01-26 2015-01-22 2015-09-183.232%