Ensembl QA: Difference between revisions
From genomewiki
Jump to navigationJump to search
Marygoldman (talk | contribs) m (adding categories) |
Marygoldman (talk | contribs) (Adding point about looking at hgFixed, as well as numbering) |
||
| Line 1: | Line 1: | ||
There are periodic updates to all Ensembl Genes tracks in all dbs. | There are periodic updates to all Ensembl Genes tracks in all dbs. | ||
A good script to run that checks many things is checkEnsembl.sh. | *A good script to run that checks many things is checkEnsembl.sh. | ||
All Ensembl builds are documented in the single file: | *All Ensembl builds are documented in the single file: | ||
src/hg/makeDb/doc/makeEnsembl.txt | src/hg/makeDb/doc/makeEnsembl.txt | ||
You can find all ensembl gene builds in: | *You can find all ensembl gene builds in: | ||
/hive/data/genomes/<db>/bed/ensGene.NN/ | /hive/data/genomes/<db>/bed/ensGene.NN/ | ||
where NN is the ensembl version number. | :where NN is the ensembl version number. | ||
*To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database | |||
[[Category:Browser QA]][[Category:Browser QA tracks]] | [[Category:Browser QA]][[Category:Browser QA tracks]] | ||
Revision as of 23:21, 21 July 2010
There are periodic updates to all Ensembl Genes tracks in all dbs.
- A good script to run that checks many things is checkEnsembl.sh.
- All Ensembl builds are documented in the single file:
src/hg/makeDb/doc/makeEnsembl.txt
- You can find all ensembl gene builds in:
/hive/data/genomes/<db>/bed/ensGene.NN/
- where NN is the ensembl version number.
- To get the links to go to the correct place at Ensembl, you will have to check for the appropriate rows in trackVersion table in hgFixed database
