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| This page explains the process we use for building and releasing our CGIs. This is done on a two-week [[CGI_Build_Schedule | schedule]]. | | This page is no longer maintained. |
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| The builds are built into sandboxes which are located here:
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| hgwbeta:/data/tmp/releaseBuild
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| titan:/scratch/releaseBuild
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| ==Setting Up the Environment for the Build==
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| NOTE: This section is a one-time only set up that you must do before starting to do the builds.
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| Before starting as buildmeister, you will need to set up the following in your log in file:
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| * go to your home directory
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| hgwdev> cd
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| * edit your .tcshrc file
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| hgwdev> vi .tcshrc file
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| * add the following lines to set permissions on files and to set the environment variables ($BOX32, $WEEKLYBLD, $BUILDDIR and $BRANCHNN are set in one of the build scripts - buildEnv.csh):
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| umask 002
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| source /cluster/bin/build/scripts/buildEnv.csh
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| alias wb 'cd $WEEKLYBLD'
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| if (( "$HOST" == "$BOX32" ) || ( "$HOST" == "hgwbeta" )) then
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| setenv hg $BUILDDIR/v${BRANCHNN}_branch/kent/src/hg
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| endif
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| * To be able to run the Java robot programs, add the following to the top of your path setting:
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| set path = ( /usr/java/jdk1.5.0_10/bin \
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| $path \
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| .
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| .
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| .
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| )
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| * optional helper functions:
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| alias wb 'cd $WEEKLYBLD'
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| if (( "$HOST" == "$BOX32" ) || ( "$HOST" == "hgwbeta" )) then
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| setenv hg $BUILDDIR/v${BRANCHNN}_branch/kent/src/hg
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| endif
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| wb gets me quickly to the scripts dir.
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| cd $hg gets me quickly to the sandbox
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| on beta when I have to recompile stuff
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| after branch tag moves, etc.
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| * source your .tcshrc to check the variables:
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| hgwdev> tcsh
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| * Set up autologin among the general cluster machines
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| On your local cse box (i.e. screech, pfft, whatever)
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| >ssh-keygen -t dsa (use enter for all defaults)
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| >cd ~/.ssh,
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| add yourself to the authorized keys
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| >cp id_dsa.pub authorized_keys
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| Also put these in hgwdev:~/.ssh
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| >scp -r .ssh/ hgwdev:
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| Permissions on .ssh should be 700.
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| Permissions on files in .ssh/ should be 600 or 640.
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| * Set up autologin to hgdownload by copying your public key to the list of authorized keys on those machines:
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| hgwdev> vi ~/.ssh/id_dsa.pub
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| copy the public key into the clipboard and then log into hgdownload as user qateam
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| hgwdev> ssh qateam@hgwdownload
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| hgwdownload> cd ~/.ssh
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| paste the key to the authorized_keys file
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| hgdownload> vi authorized_keys
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| ===Build Symlinks===
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| These are critical for building 32 bit and 64 bit utilities
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| * Go to ~/bin directory
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| hgwdev> cd ~/bin
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| * Make sure you have $MACHTYPE directories
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| hgwdev> mkdir i386
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| hgwdev> mkdir x86_64
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| * Create a symlink for each $MACHTYPE
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| hgwdev> ln -s /cluster/bin/i386 i386.cluster
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| hgwdev> ln -s /cluster/bin/x86_64 x86_64.cluster
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| * The symtrick.csh uses these automatically.
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| * If a script crashes and leaves the symlinks in an incorrect state, use unsymtrick.csh to restore. Build scripts check to see if unsymtrick.csh should be executed.
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| ==Preview Day Build==
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| '''This is day 1 in the [[CGI_Build_Schedule | schedule]].'''
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| ===Run CVS Reports===
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| * go to /cluster/bin/build/scripts/oldsettings
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| hgwbeta> cd $WEEKLYBLD
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|
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| * edit buildEnv.csh: change the 5th line then the 4th line
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| hgwbeta> vi buildEnv.csh
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| line 5 (OLD): setenv LASTREVIEWDAY 2006-03-20 # preview of v110
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| line 5 (NEW): // change it to look like the date and comment from line 4
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| line 4 (OLD): setenv REVIEWDAY 2006-04-03 # preview of v111
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| line 4 (NEW): setenv REVIEWDAY 2006-today # preview of v112
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| * copy this edited buildEnv.csh file to the oldsettings directory to a new file called buildEnv.csh.vXXX[+ 1].preview
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| hgwbeta> cp buildEnv.csh oldsettings/buildEnv.csh.v112.preview
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| * source your .tcshrc
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| hgwbeta> tcsh
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| * check that the vars are correct
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| hgwbeta> env
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| * run doNewReview.csh as a test to see what it will do (review the variablies)
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| hgwbeta> ./doNewReview.csh
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| * run for real (this takes about 20 minutes - it does the run by ssh'ing to hgwdev) and direct output to a log file
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| hgwbeta> ./doNewReview.csh real >& doNewRev.log
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| * review the output file as it is written to
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| hgwbeta> tail -f doNewRev.log
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| ===Check the reports===
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| * The reports are automatically built by the script into this [http://hgwdev.cse.ucsc.edu/cvs-reports location].
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| * Briefly review the reports quickly as a sanity check.
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| ===Generate summary and review pairings=== (Donna takes care of this)
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| * Summarize the code changes that were committed during the past week.
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| * Update this [http://hgwdev.cse.ucsc.edu/builds/versions.html page] with the summary.
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| * Assign code-review partners.
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| * Send an email to browser-staff with the summary and code-review pairings.
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| ===Test on hgwbeta===
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| * Wait to hear from QA about how their CGIs look on hgwbeta. Each member of the QA team has [http://hgwdev.cse.ucsc.edu/qa/cgiTesting.html testing responsiblities].
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| ==Make changes to code base as necessary==
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| '''This happens on days 9, 10, and 11 in the [[CGI_Build_Schedule | schedule]].'''
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| * If there are problems with the build a developer will fix the code. This fix needs to be patched into the build on hgwbeta. This [[ Moving_a_Branch_Tag | page]] explains how to move a Branch Tag on hgwbeta.
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| ==Final Build==
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| '''This is day 8 in the [[CGI_Build_Schedule | schedule]].'''
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| ===Do the Build===
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| * go to /cluster/bin/build/scripts/oldsettings
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| hgwbeta> cd $WEEKLYBLD
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| * edit the buildEnv.csh file
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| hgwbeta> vi buildEnv.csh
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| setenv BRANCHNN 131
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| setenv TODAY 2006-04-10 # v131 final
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| setenv LASTWEEK 2006-03-27 # v130 final
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| * edit file: add one to the BRANCHNN
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| setenv BRANCHNN 132
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| * edit file: change the 3rd line then the 2nd line
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| line 3 (OLD): setenv LASTWEEK 2006-03-27 # v130 final
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| line 3 (NEW): // change it to look like the date and comment from line 2
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| line 2 (OLD): setenv TODAY 2006-04-10 # v131 final
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| line 2 (NEW): setenv TODAY (today) # v132 final
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| * copy this edited buildEnv.csh file to the oldsettings directory to a new file called buildEnv.csh.vXXX.final
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| hgwbeta> cp buildEnv.csh oldsettings/buildEnv.csh.v112.final
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| * source your .tcshrc
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| hgwbeta> tcsh
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| * check that the vars are correct
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| hgwbeta> env
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| * run doNewBranch.csh as a test to see what it will do (review the variables)
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| hgwbeta> ./doNewBranch.csh
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| * run for real and send the output to a file
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| hgwbeta> ./doNewBranch.csh real >& doNew.log
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| * review the output file as it is written to
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| hgwbeta> tail -f doNew.log
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| * look for files that tell you it was successful
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| hgwbeta> /cluster/bin/build/scripts/32bitUtils.ok
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| hgwbeta> /cluster/bin/build/scripts/CvsReports.ok
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| * What the doNewBranch.csh script does:
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| # edits the versionInfo.h file
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| # makes tags (takes several minutes)
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| # builds CVS reports (takes 5-10 minutes)
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| # does build (takes 5-10 minutes)
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| ## builds CGIs (most important)
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| ## builds utils (of secondary importance)
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| # runs robots one at a time
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| ## hgNear (20 min)
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| ## hgTables (1 hour)
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| ## TrackCheck (several hours)
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| ## LiftOverTest (quick)
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| * '''Review the error logs for the robots:'''
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| /build/scripts/logs/ (error logs)
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|
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| hgNear -- sends email with results
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| hgTables -- send email with results
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| hgTrackCheck -- must check by hand+
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| LiftOverTest -- must check by hand+
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| (+ located here: hgwbeta:/cluster/bin/build/scripts/logs)
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| ==Push the CGIs==
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| '''This is day 12 in the [[CGI_Build_Schedule | schedule]].'''
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| ===Push to hgwN only===
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| * hgwN is one of the RR machines, hgw1-8. Each build, rotate to the next machine in numeric order i.e. hgw1 then hgw2 etc. so that one machine is not being worked more than the others.
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| * QA will ask for push of CGIs from hgwbeta to hgwN only. Make sure you add a note to the cluster-admins to make sure they know which RR machine to push to first. If there is a NEW CGI going out this week, be sure to make a prominent note of it in your push request. The admins push from a script, and they will need to add your new CGI to the script.
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| As of '''August 2007''', here's a list of the CGIs and data files we push. Note that CGIs and data files may have been added since this list was created -- this is meant to be a starting point.
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| cartDump cartReset das hgc
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| hgBlat hgConvert hgCustom hgGateway hgGene hgGenome
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| hgLiftOver hgNear hgPcr hgSession hgTables hgText hgTracks hgTrackUi
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| hgVisiGene mkEncodeFrameset hgEncodeDataVersions
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| pbGateway pbGlobal pbTracks phyloGif
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|
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| /usr/local/apache/cgi-bin/all.joiner
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| /usr/local/apache/cgi-bin/galaAvail.tab
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| /usr/local/apache/cgi-bin/hgNearData/*
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| /usr/local/apache/cgi-bin/hgGeneData/*
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| /usr/local/apache/cgi-bin/hgcData/*
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| /usr/local/apache/cgi-bin/hgCgiData/*
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| /usr/local/apache/cgi-bin/visiGeneData/*
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| /usr/local/apache/cgi-bin/loader/*
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| * Run TrackCheck.java on hgwN. This is the responsibility of the QA person who tests hgTracks.
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| # start here: [hgwdev:/scratch/javaBuild/src/edu/ucsc/genome/qa/cgiCheck>
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| # make a props file which specifies the machine/db to check. If you are in a hurry, set zoomCount=0 and it will only check the default position for each assembly (much quicker!).
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| # run it: [hgwdev:/scratch/javaBuild/src/edu/ucsc/genome/qa/cgiCheck> nohup TrackCheck hgw1.props > & $WEEKLYBLD/logs/hgw1.07-13-2006
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| # grep the output for 'error' (and 'Error').
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| * Monitor Apache Error Log (QA does this):
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| hgwN:/usr/local/apache/logs/error_log
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| * Wait to hear from QA about how their CGIs look on hgwN. Each member of the QA team has [http://hgwdev.cse.ucsc.edu/qa/cgiTesting.html testing responsiblities]. Check also that TrackCheck ran successfully.
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| ===Push to the rest of the RR===
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| * QA will ask for push from hgwbeta to the rest of the hgwN machines & MGC.
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| ==Final Build Wrap-up==
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| '''This is day 12 in the [[CGI_Build_Schedule | schedule]].'''
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| * zip the source code
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| hgwbeta> cd /cluster/bin/build/scripts
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| hgwbeta> tcsh
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| hgwbeta> env
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| hgwbeta> doZip.csh (this is automatically pushed to hgdownload)
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| * build and push hgcentral
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| hgwdev> ./buildHgCentralSql.csh
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| hgwdev> ./buildHgCentralSql.csh real
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| ** request push of hgcentral to hgdownload
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| Please push from hgwdev --> hgdownload
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| /usr/local/apache/htdocs/admin/hgcentral.sql
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| This includes settings for the mirror sites.
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| * build 32bit build and push to hgdownload
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| hgwbeta> cd /cluster/bin/build/scripts
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| hgwbeta> doBuildCgi32.csh
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| ** the push to hgdownload happens automatically to here:
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| hgdownload:/mirrordata/apache/cgi-bin-i386/
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| * zip liftOver utils on hgwbeta and scp them to hgdownload
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| hgwbeta> cd /cluster/bin/build/scripts
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| hgwbeta> doHgDownloadUtils.csh
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| * send email to genome-mirror. Include link to latest source: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip.
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| [[Category:Browser QA]]
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