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| Before testing your CGIs, check the [http://genecats.cse.ucsc.edu/builds/versions.html version notes] for recent changes particular to your CGIs. Pay extra attention to the changes when testing.
| | This page is no longer maintained. |
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| ==hgTracks==
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| # The TrackCheck robot checks this pretty thoroughly. Check TrackCheck output for errors.
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| # manually check anything that has been an issue during the past 2-week release cycle
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| # hgTracks:
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| ## set position to 20bp & turn on all the tracks in hg18 to dense (using configure page); make sure all tracks load
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| ## check that drag/reorder of tracks works
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| ===track search===
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| * Try a search that will bring up the 3 different kinds of tracks, which are are shaded with different colors:
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| ** tan: super-track (has a folder/wrench icon)
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| ** light orange: composite (has a folder/wrench icon)
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| ** light yellow: an actual data track (not a container)
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| (note that ENCODE Regulation track on hg18 is a special kind of super-track)
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| * Make sure you can configure tracks via the folder/wrench icons as well as by adjusting the "view" drop-downs (after hitting submit on a configure page, you should be returned to the track search page)
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| * Try the different sort types ("Alphabetically" sorts on the longLabel)
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| * Check that the track description pops up when you click a blue track name
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| * Check that metadata appears when you click the "..." after a track name
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| ** Check that the links within the metadata work
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| * Try a couple of advanced searches
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| ** Make sure searching with "ENCODE terms" is working
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| ==hgc==
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| check the hgc details of one track per group on hg18, try a few links on the details page for a few, and try at least one composite to try composite specific things like metadata link.
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| ==hgTrackUi==
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| There are a couple of tracks to always check since they are very popular.
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| * ENCODE
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| ** test the correspondence between the matrix and the list of tracks when you turn on or off different tracks, including the graying out of boxes in the matrix
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| ** test different views for multiple tracks while testing correspondence between matrix and list of tracks
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| ** test one track that has 3 dimensional matrix
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| ** try sorting list of tracks by different columns
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| ** test links at the top of the page to downloads, subtracks and description
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| ** test that the buttons allowing users to go to super-tracks from child-tracks at the top of the page work
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| * Conservation (a "full" track like the one found on hg19)
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| ** test all aspects and buttons of the multiz track, including codon frames and the mini-wiggles visible when both the subtrack and parent track are on "full"
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| ** use this as an opportunity to test all aspects of a wiggle track
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| ** try filtering by score
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| * SNPs
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| ** test that adding different gene prediction tracks do change the details page for individual SNPs
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| ** test either the Minimum Average Heterozygosity or Maximum Weight filtering
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| ** test the filtering by attribute
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| ** test color specification, including changing the default color for a specification
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| * mRNAs
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| ** test filtering by one and more than one search term, as well as different filtering options
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| ** test that the coloring by codons/alignment function as expected
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| Finally, test a few random tracks from a few different assemblies (good candidates with non-standard trackUis include Chain/Nets, TransMap, Human Proteins, Restriction Enzymes). A fun one to test is HapMap LD Phased on hg18 since it has a radically different hgTrackUi.
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| Also test the "configure" button for one assembly.
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| ==hgGene==
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| # Heather has a robot to check this CGI
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| # test one known gene - click off-site, check entire page
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| # test all possible paths among KG, PB, GS, VG (not that you wind up in mouse VG and need to use "Other Species" to get back to human.)
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| ==hgNear==
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| # To test on this click on "Gene Sorter" from the blue navigation bar.
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| # Type a gene into the search text box
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| # Pick a gene that has a long list of results.
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| # Test sort by.
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| # Test configure (make sure new columns show up and test the order feature)
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| #* Expression colors (change them to see if they are displaying)
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| # Click the column headers to make sure that the descriptions show up
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| # Click on a couple of entires to make sure they display in the browser.
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| # Click on "sequence" from the sorter
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| # Click on "filter" and try filtering from a specific column. Don't for get to put a "*" next to the search term or it most likely won't return any results.
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| ==hgCustom==
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| # Test all three methods of entering a CT: typed in, uploaded by file, URL.
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| # Test editing, deleting, adding, updating, HTML docs, etc.
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| # Test adding mutiple tracks at once (multiple tracks in one file, multiple URLs, and pasting in mutiple tracks)
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| # Test CTs in relation to the Table Browser.
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| *See also examples page here: [[Custom_Track_Examples|Custom Track Examples]]
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| ==hgVisiGene==
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| # test the search box by entering a gene name
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| # check the zoom buttons
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| # check that the "Gene" link opens the correct gene details page, and that that "visiGene" link in that gene details page retrieves the correct images in visiGene
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| # pick an image and check all of the links for that page
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| # for images composed of several smaller images, check that the pane descriptions are displaying correctly (not all panes will have an associated pane description)
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| # (Note: the images from Mahoney are a subset of the MGI/Jax images. The Mahoney images should list two sources and should show two sets of acknowledgements.)
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| ==hgTables==
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| # check all drop-downs
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| # press on summary/stats button
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| # do an intersection with a couple of different output formats
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| # make sure filtering is functioning
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| # create a custom track in the browser
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| # check all output formats
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| # try sending output to Galaxy and GREAT; make sure checkboxes stay checked when applying filters, etc.
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| # do a subtrack merge (select a table from a composite track to get the option)
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| # do a correlation
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| # try defining regions
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| ==hgPal==
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| # check a "Protein FASTA" click-through from a UCSC Gene details page
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| # check a "CDS FASTA" click-through from a RefSeq Genes details page
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| # using the Table Browser, choose "CDS FASTA" as the output format (this should work for any [http://genome.ucsc.edu/FAQ/FAQformat.html#format9 genePred] track)
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| # check that different settings give expected results
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| ==hgBlat==
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| # perform both a nucleotide and a protein search with default settings
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| # make sure colors listed in description section are right
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| # zoom in on an alignment and test "View details of parts of alignment within browser window"
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| # try different sorts and output types
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| # make sure all the buttons work, including uploading a file
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| # try uploading a file with too many bases or too many queries and verify error message
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| ==hgPcr==
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| # test some perfectly matching primers, including a pair on the negative strand
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| # find a pair of primers that shouldn't match UCSC Genes and test that they don't
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| # vary settings and input primers for several assemblies and see if results make sense
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| # for human and mouse browsers, test the "UCSC Genes" target. Check that UI functions as expected
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| # check that the UI functions as expected for regular primers as well
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| ==hgLiftOver, hgConvert==
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| # Choose an assembly and go to hgTracks
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| # Hit "Convert" in the blue bar at the top of the page
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| # Compare the output to the same conversion using liftOver:
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| # LiftOver is at Home -> Utilities -> Batch Coordinate Conversion (liftOver)
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| # Test both position and BED format
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| # Test a variety of settings
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| # Try converting multiple positions at once
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| # Try uploading a file
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| ==pbGateway, pbGlobal, pbTracks==
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| # general testing; click around
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| # enter a protein symbol
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| # review results page
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| # click into pbGlobal and check display
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| ==hgSession==
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| #check that a new session can be saved
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| #check that old sessions are still there
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| #delete a session
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| #check browser & email button; click the title of session & make sure you can save changes to the description
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| #try loading a session via a file and via a URL
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| #logout and try to load a session that can be shared and one that can't be shared
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| ==hgGenome==
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| #find it by going Home -> Genome Graphs
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| #upload a dataset from a file
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| #upload a data set from a URL
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| #import data from a track
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| #change some configurations
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| #check that "browse regions" & "sort genes" work
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| #check the correlate button
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| Some good genome graph data for testing: http://hgwdev.cse.ucsc.edu/~rhead/genomeGraphsWithColumns
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| ==cartDump, cartReset==
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| # check cart
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| # reset cart
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| # check cart again
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| See also: cart test protocol
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| ==hgApi==
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| This CGI is responsible for the metadata "..." links on the hgTrackUi page and the "metadata" links on the hgc details pages of composite tracks with metadata. | |
| # click on a "..." link and check that it opens up - no need to check the content. You only need to test one "..." link - if hgApi is broken, it will break all "..." links.
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| # This CGI can also be tested by clicking on a "meatadata" link in hgc details and check that it opens up - no need to check the content.
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| Probably doing 1 or 2 is sufficient, but it is a good habit to have the testers of hgTrackUi and hgc check 1 and 2 respectively, that way we are double covered in case one person forgets.
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| ==hgEncodeVocab==
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| # Go to an ENCODE track, most matrix headers should be links. Click on them, should take you to a page with a row of info about the term.
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| # Go to a couple of these pages and check that the sections are displaying (these pages use hgEncodeVocab to display the info on them):
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/otherTerms.html Registered Variables]
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/antibodies.html Antibodies]
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/cellTypes.html Human Cell Types]
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| #* [http://hgw2.cse.ucsc.edu/ENCODE/cellTypesMouse.html Mouse Cell Types]
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| # Check a few links in the metadata from hgc details (click "metadata" link to view other links) or hgTrackUi (click "..." link to view other links)
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| [[Category:Browser QA]]
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