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| ==Creating URL Links to Ensembl==
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| * On the Ensembl details pages, there are links to the Ensembl Transcript ID and Ensembl Protein ID details pages.
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| e.g.
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| Ensembl Gene Link: ENST00000370314
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| Ensembl Protein: ENSP00000359337
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| where the IDs are the links to Ensembl (http://www.ensembl.org) pages.
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| * Ensembl is updated every 2 months and the previous version is archived. Check Ensembl [http://www.ensembl.org] for the date of the correct Ensembl release for the track.
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| * In order to make sure that the URLs constructed for the links are pointing to the correct archive, a trackDb setting is added to the assembly level trackDb.ra e.g. for zebrafish danRer5:
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| hgwdev> cd ~/kent/src/hg/makeDb/trackDb/zebrafish/danRer5
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| hgwdev> vi trackDb.ra
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| Edit and add a trackDb setting line like this to the ensGene track:
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| ensArchive aug2007
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| * A trackDb dataVersion setting line should be added to show which Ensembl Release was used to create the track
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| dataVersion Ensembl Release 46
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| * Add the release number to the longLabel setting for the track.
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| * NOTE: URLs are constructed by the hgc.c code by the printEnsemblUrl() function that is called by doEnsemblGene().
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Latest revision as of 18:44, 10 March 2011
This page is no longer maintained.
