XenTro3 conservation alignment: Difference between revisions
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==see also== | ==see also== | ||
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<TD ALIGN=RIGHT>2010-11-04</TD> | <TD ALIGN=RIGHT>2010-11-04</TD> | ||
<TD ALIGN=RIGHT>N/A</TD> | <TD ALIGN=RIGHT>N/A</TD> | ||
<TD>2011-09- | <TD>2011-09-28</TD><TD ALIGN=RIGHT>4.203%</TD> | ||
</TR><TR> | </TR><TR> | ||
<TH>[http://www.broadinstitute.org/mammals/opossum 05]</TH><TH>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD> | <TH>[http://www.broadinstitute.org/mammals/opossum 05]</TH><TH>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD> | ||
Latest revision as of 17:17, 28 September 2011
see also
- X. tropicalis 9-way XenTro3 Genome size statistics
- X. tropicalis 9-way XenTro3 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-test browser |
Scientific name/ assembly information |
Common name |
assembly date | source version |
Repeat Masker |
Window Masker |
chain on xenTro3 |
% of xenTro3 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | xenTro3 | Xenopus tropicalis | X. tropicalis | Nov. 2009 (JGI 4.2/xenTro3) | US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1) | 2011-09-08 | 2011-09-08 | N/A | N/A |
| 02 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2011-09-20 | 6.775% |
| 03 | galGal3 | Gallus gallus | Chicken | May 2006 (WUGSC 2.1/galGal3) | Chicken Genome Sequencing Consortium May 2006 release | 2009-08-15 | 2007-01-02 | 2011-09-20 | 4.730% |
| 04 | melGal1 | Meleagris gallopavo | Turkey | Dec. 2009 (TGC Turkey_2.01/melGal1) | TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) | 2010-11-04 | N/A | 2011-09-28 | 4.203% |
| 05 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2011-09-23 | 5.492% |
| 06 | rn4 | Rattus norvegicus | Rat | Nov. 2004 (Baylor 3.4/rn4) | Baylor HGSC v. 3.4 | 2009-08-15 | N/A | 2011-09-23 | 5.216% |
| 07 | mm9 | Mus musculus | Mouse | July 2007 (NCBI37/mm9) | NCBI Build 37 | 2009-08-14 | N/A | 2011-09-21 | 6.609% |
| 08 | hg19 | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-08-15 | N/A | 2011-09-21 | 6.694% |
| 09 | danRer7 | Danio rerio | Zebrafish | Jul. 2010 (Zv9/danRer7) | Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) | 2010-12-03 | N/A | 2011-09-21 | 7.107% |
